Query 024069
Match_columns 273
No_of_seqs 108 out of 1127
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:43:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 1.4E-36 3.1E-41 281.8 17.2 206 30-259 238-449 (449)
2 PLN03074 auxin influx permease 100.0 2.5E-36 5.5E-41 287.8 19.1 222 26-273 226-465 (473)
3 KOG1303 Amino acid transporter 100.0 2.9E-36 6.3E-41 282.8 14.9 206 36-262 231-437 (437)
4 PTZ00206 amino acid transporte 100.0 2E-33 4.4E-38 268.1 15.7 206 34-260 257-465 (467)
5 PF01490 Aa_trans: Transmembra 100.0 2E-31 4.4E-36 249.1 0.6 215 30-256 189-408 (409)
6 KOG4303 Vesicular inhibitory a 100.0 7.6E-31 1.6E-35 233.0 -2.4 217 37-267 306-522 (524)
7 KOG1305 Amino acid transporter 99.9 3.7E-25 8.1E-30 206.7 16.3 213 30-261 191-407 (411)
8 COG0814 SdaC Amino acid permea 99.5 1.4E-12 3E-17 123.1 18.0 206 30-255 190-411 (415)
9 TIGR00837 araaP aromatic amino 99.0 6.9E-09 1.5E-13 96.6 14.6 171 32-227 177-359 (381)
10 PF03222 Trp_Tyr_perm: Tryptop 98.7 1.1E-06 2.3E-11 82.7 18.8 173 30-229 181-367 (394)
11 PRK15132 tyrosine transporter 98.6 2.3E-06 5.1E-11 80.5 15.7 190 35-249 183-389 (403)
12 PRK10483 tryptophan permease; 98.4 2.4E-05 5.3E-10 73.7 16.6 168 34-227 193-373 (414)
13 PRK09664 tryptophan permease T 98.1 0.00013 2.8E-09 68.9 16.4 169 34-227 194-374 (415)
14 TIGR03813 put_Glu_GABA_T putat 97.9 0.00068 1.5E-08 65.1 17.8 54 40-96 201-254 (474)
15 PRK11021 putative transporter; 97.9 0.0017 3.7E-08 61.1 20.0 65 30-97 174-240 (410)
16 PRK10644 arginine:agmatin anti 97.9 0.0011 2.4E-08 63.1 17.9 56 32-90 190-245 (445)
17 PRK10435 cadB lysine/cadaverin 97.9 0.0017 3.6E-08 61.8 19.0 60 30-92 184-243 (435)
18 PRK10655 potE putrescine trans 97.9 0.0016 3.5E-08 61.8 18.6 57 33-92 189-245 (438)
19 PRK10197 gamma-aminobutyrate t 97.9 0.0012 2.6E-08 63.1 17.7 57 31-90 179-235 (446)
20 TIGR00814 stp serine transport 97.9 9.7E-05 2.1E-09 69.6 9.9 179 32-224 185-376 (397)
21 PRK15049 L-asparagine permease 97.8 0.0012 2.6E-08 64.0 17.2 59 31-92 218-276 (499)
22 PRK13629 threonine/serine tran 97.8 0.00067 1.5E-08 64.4 14.7 200 34-248 210-435 (443)
23 PRK10249 phenylalanine transpo 97.8 0.002 4.2E-08 61.8 18.1 58 31-91 207-264 (458)
24 PRK10746 putative transport pr 97.8 0.0019 4.1E-08 62.0 17.5 56 31-89 198-253 (461)
25 TIGR03810 arg_ornith_anti argi 97.7 0.004 8.6E-08 59.8 18.9 59 34-96 196-254 (468)
26 PRK11049 D-alanine/D-serine/gl 97.7 0.0037 8E-08 60.0 17.6 59 31-92 209-267 (469)
27 PRK10238 aromatic amino acid t 97.6 0.0027 5.8E-08 60.8 16.2 53 32-87 199-251 (456)
28 PRK11387 S-methylmethionine tr 97.6 0.0054 1.2E-07 58.9 17.7 57 32-91 205-261 (471)
29 PRK10580 proY putative proline 97.5 0.0061 1.3E-07 58.3 17.3 56 31-89 197-252 (457)
30 TIGR00913 2A0310 amino acid pe 97.5 0.0085 1.8E-07 57.5 17.8 55 32-89 196-250 (478)
31 PRK10836 lysine transporter; P 97.5 0.012 2.5E-07 56.9 18.1 60 32-94 204-263 (489)
32 PRK11357 frlA putative fructos 97.4 0.0069 1.5E-07 57.6 16.3 56 32-90 194-249 (445)
33 TIGR01773 GABAperm gamma-amino 97.4 0.0086 1.9E-07 57.1 16.5 60 31-93 199-258 (452)
34 TIGR00907 2A0304 amino acid pe 97.4 0.016 3.5E-07 55.7 18.1 60 34-96 218-277 (482)
35 TIGR00908 2A0305 ethanolamine 97.4 0.021 4.5E-07 54.3 18.3 56 31-89 189-244 (442)
36 TIGR00909 2A0306 amino acid tr 97.3 0.018 3.9E-07 54.4 17.6 59 31-92 193-251 (429)
37 TIGR00930 2a30 K-Cl cotranspor 97.3 0.018 3.8E-07 60.1 18.6 53 35-90 282-334 (953)
38 TIGR00906 2A0303 cationic amin 97.3 0.0066 1.4E-07 59.7 14.8 57 31-90 229-285 (557)
39 PF13520 AA_permease_2: Amino 97.3 0.015 3.2E-07 54.7 16.7 58 35-97 190-247 (426)
40 TIGR00905 2A0302 transporter, 97.2 0.034 7.4E-07 53.4 18.2 57 32-92 198-254 (473)
41 TIGR00910 2A0307_GadC glutamat 97.1 0.04 8.7E-07 53.6 17.7 51 35-88 196-246 (507)
42 PRK15238 inner membrane transp 97.1 0.046 9.9E-07 52.9 18.0 54 33-89 211-264 (496)
43 TIGR00911 2A0308 L-type amino 96.7 0.04 8.7E-07 53.3 13.8 58 31-91 233-290 (501)
44 COG0531 PotE Amino acid transp 96.7 0.16 3.6E-06 48.0 17.5 61 34-97 202-262 (466)
45 TIGR03428 ureacarb_perm permea 96.3 0.73 1.6E-05 44.3 19.9 56 34-92 214-269 (475)
46 KOG1287 Amino acid transporter 96.3 0.13 2.8E-06 49.4 14.2 179 30-229 201-388 (479)
47 COG1113 AnsP Gamma-aminobutyra 96.0 0.12 2.5E-06 49.2 11.9 181 29-226 199-388 (462)
48 KOG1286 Amino acid transporter 94.8 0.41 9E-06 47.1 11.8 55 32-89 231-285 (554)
49 PF00324 AA_permease: Amino ac 93.7 0.068 1.5E-06 51.3 3.9 66 31-99 198-263 (478)
50 TIGR00912 2A0309 spore germina 92.6 1.3 2.8E-05 40.7 10.6 56 40-99 186-241 (359)
51 COG0833 LysP Amino acid transp 90.7 8.2 0.00018 37.8 13.8 180 30-225 231-426 (541)
52 KOG2082 K+/Cl- cotransporter K 79.8 24 0.00051 36.2 11.0 73 56-132 433-519 (1075)
53 KOG4812 Golgi-associated prote 79.1 5.2 0.00011 34.9 5.6 81 180-264 159-255 (262)
54 KOG1289 Amino acid transporter 77.3 42 0.0009 33.0 11.7 81 13-100 236-316 (550)
55 PRK13183 psbN photosystem II r 73.5 4 8.6E-05 26.1 2.5 33 68-100 3-35 (46)
56 CHL00020 psbN photosystem II p 69.2 4.3 9.3E-05 25.6 2.0 29 71-99 3-31 (43)
57 PF02468 PsbN: Photosystem II 64.8 6.2 0.00014 25.0 2.1 29 72-100 4-32 (43)
58 COG1914 MntH Mn2+ and Fe2+ tra 62.5 1.3E+02 0.0028 28.7 11.5 54 174-227 325-378 (416)
59 COG0814 SdaC Amino acid permea 58.4 85 0.0018 29.8 9.6 51 176-226 324-375 (415)
60 PF00474 SSF: Sodium:solute sy 54.2 79 0.0017 29.4 8.6 36 183-219 350-385 (406)
61 PF03845 Spore_permease: Spore 53.5 18 0.00039 32.6 4.1 66 29-98 171-236 (320)
62 PRK11375 allantoin permease; P 50.2 2.5E+02 0.0054 27.2 13.1 50 48-101 243-296 (484)
63 TIGR00796 livcs branched-chain 47.5 2.5E+02 0.0053 26.4 13.4 42 48-92 196-241 (378)
64 COG3476 Tryptophan-rich sensor 38.5 79 0.0017 26.0 5.1 55 41-100 19-73 (161)
65 PRK12768 CysZ-like protein; Re 38.1 2.3E+02 0.005 24.8 8.3 28 56-88 9-36 (240)
66 TIGR00800 ncs1 NCS1 nucleoside 37.9 3.6E+02 0.0078 25.5 12.2 51 48-102 223-277 (442)
67 PF01102 Glycophorin_A: Glycop 37.8 63 0.0014 25.3 4.3 29 237-265 65-93 (122)
68 PF02417 Chromate_transp: Chro 37.6 35 0.00075 28.0 3.0 57 37-93 8-68 (169)
69 COG4956 Integral membrane prot 37.2 3.4E+02 0.0073 25.0 9.5 23 193-215 106-128 (356)
70 PRK11026 ftsX cell division AB 36.2 1.9E+02 0.0041 26.2 7.9 27 237-263 280-306 (309)
71 PRK12488 acetate permease; Pro 36.0 4.3E+02 0.0094 25.9 17.3 41 55-97 281-324 (549)
72 COG3763 Uncharacterized protei 32.8 1.4E+02 0.0029 21.1 4.8 32 237-268 6-38 (71)
73 PF05805 L6_membrane: L6 membr 31.3 1.8E+02 0.0039 24.7 6.3 58 204-261 50-117 (195)
74 PF08019 DUF1705: Domain of un 30.3 2.3E+02 0.005 22.7 6.7 11 215-225 77-87 (156)
75 COG3296 Uncharacterized protei 29.6 2.9E+02 0.0063 21.9 7.4 28 183-225 22-49 (143)
76 TIGR00439 ftsX putative protei 29.4 3.3E+02 0.0071 24.7 8.2 28 237-264 280-307 (309)
77 TIGR00813 sss transporter, SSS 28.7 4.1E+02 0.0089 24.7 9.1 40 55-96 223-265 (407)
78 PHA02680 ORF090 IMV phosphoryl 27.1 1.8E+02 0.0039 21.4 4.8 59 34-97 12-71 (91)
79 PF03977 OAD_beta: Na+-transpo 25.7 1.1E+02 0.0023 28.4 4.2 73 34-107 146-234 (360)
80 PRK11281 hypothetical protein; 24.4 8.6E+02 0.019 26.5 11.2 31 67-97 540-570 (1113)
81 cd08765 Cyt_b561_CYBRD1 Verteb 24.0 3.9E+02 0.0084 21.7 6.9 68 67-138 44-111 (153)
82 COG4478 Predicted membrane pro 21.3 3E+02 0.0066 23.4 5.7 28 237-264 126-153 (210)
83 PF11188 DUF2975: Protein of u 20.5 2.2E+02 0.0048 21.6 4.8 15 257-271 44-58 (136)
84 TIGR02358 thia_cytX probable h 20.1 7.1E+02 0.015 23.1 13.1 45 50-98 190-234 (386)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-36 Score=281.80 Aligned_cols=206 Identities=17% Similarity=0.240 Sum_probs=186.3
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchh---hhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccc
Q 024069 30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMK---KATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTG 106 (273)
Q Consensus 30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~---~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~ 106 (273)
.+.-+....+|+.+|||+|.+++.++|++||+| ++|. ++++.+|.+++++|..+|.+||++|||++++.|++|
T Consensus 238 ~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLN 313 (449)
T KOG1304|consen 238 TGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLN 313 (449)
T ss_pred cchhhhHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEec
Confidence 344567788999999999999999999999998 7899 999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHHH
Q 024069 107 FGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVL 186 (273)
Q Consensus 107 l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~ 186 (273)
+| .+|+.+.+++++.+.+.++||++.+|+.+.+|+.+.+++..+ + + ++....+|..++++
T Consensus 314 LP---~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~----~------------~-~~~~~~~R~~lVll 373 (449)
T KOG1304|consen 314 LP---QEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN----R------------K-KLLEYALRVFLVLL 373 (449)
T ss_pred CC---ccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc----h------------h-HHHHHHHHHHHHHH
Confidence 97 389999999999999999999999999999999987754321 0 1 47788899999999
Q ss_pred HHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024069 187 TTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR---GTTRWLGLQILNVSCFFITLVAAIGSVAGV 259 (273)
Q Consensus 187 ~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~---~~~~~~~~~~l~~~g~~~~v~gt~~si~~i 259 (273)
+..+|.++|+++++++|+||+|++.+++++|++++++.++++. +.++++.|.+++++|++.++.|||.|+.++
T Consensus 374 t~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 374 TFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999999999999999999999999876554 345677899999999999999999999764
No 2
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=2.5e-36 Score=287.77 Aligned_cols=222 Identities=18% Similarity=0.217 Sum_probs=187.6
Q ss_pred cCchhHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCC--ccc
Q 024069 26 VTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP--NNL 103 (273)
Q Consensus 26 ~~~~~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~--~~i 103 (273)
+..+.++...+.++++++|||+||+++||||+|||+| ++|+++...++.+++++|..+|+.|||+|||+++ ++.
T Consensus 226 ~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~ 301 (473)
T PLN03074 226 HSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNA 301 (473)
T ss_pred CCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhH
Confidence 3345677888999999999999999999999999998 6899999999999999999999999999999986 466
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHH
Q 024069 104 LTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLF 183 (273)
Q Consensus 104 l~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~ 183 (273)
++|+| ++. ...++++++.++++.+|+++..|+.+.+|+.+..+ +. ++ .+.|.++|+.+
T Consensus 302 l~~lp--~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~-----k~------------~~~r~~~R~~l 359 (473)
T PLN03074 302 FSLLP--RSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DT-----KS------------ICLRALARLPV 359 (473)
T ss_pred HhcCC--Cch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--cc-----cc------------HHHHHHHHHHH
Confidence 77786 233 45788999999999999999999999999876431 10 11 26789999999
Q ss_pred HHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC-------------Cchh--hHHHHHHHHHHHHHH-
Q 024069 184 VVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG-------------RGTT--RWLGLQILNVSCFFI- 247 (273)
Q Consensus 184 v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~-------------~~~~--~~~~~~~l~~~g~~~- 247 (273)
+++++++|+.+|+|++++||+||+++++++|++|+++|+++++++ ...+ +.+.|+++++++.++
T Consensus 360 v~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g 439 (473)
T PLN03074 360 VVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVG 439 (473)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHh
Confidence 999999999999999999999999999999999999999865432 1111 236798888865555
Q ss_pred HHHHHHHHHHHHHHhhcccccCccCC
Q 024069 248 TLVAAIGSVAGVVLDLKTYKPFKTRY 273 (273)
Q Consensus 248 ~v~gt~~si~~ii~~~~~~~~f~~~~ 273 (273)
.+.|+|+|+++|++++++|++|++.|
T Consensus 440 ~~~G~~asi~~ii~~~~~~~~f~~~~ 465 (473)
T PLN03074 440 FGFGGWASMTNFVRQIDTFGLFAKCY 465 (473)
T ss_pred hccchHHHHHHHHHhhhhhhhhhhhc
Confidence 57999999999999999999998864
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-36 Score=282.80 Aligned_cols=206 Identities=42% Similarity=0.750 Sum_probs=189.3
Q ss_pred HHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCCCCChHH
Q 024069 36 LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWL 115 (273)
Q Consensus 36 f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~~~~~~~ 115 (273)
|+++|+++|||+||+++||||++||+| ++|+|++..|+.+++.+|+.++++|||+|||+++|+++.|++ +|.|.
T Consensus 231 f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~ 304 (437)
T KOG1303|consen 231 FTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWL 304 (437)
T ss_pred hhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhH
Confidence 899999999999999999999999998 469999999999999999999999999999999999999995 58899
Q ss_pred HHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHHHHHHHHhhcc
Q 024069 116 IDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP 195 (273)
Q Consensus 116 ~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iAi~iP 195 (273)
...+++++.+|++.+|+++++|.++.+|+.+..++++ . .. +..+.|.+.|+.+++.++++|+.+|
T Consensus 305 ~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~-----~~--------~~~~~R~~~Rt~~v~~~~~vA~~~P 369 (437)
T KOG1303|consen 305 IALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--F-----KK--------RSLVLRLLVRTFFVAVTTFVALSFP 369 (437)
T ss_pred HHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--c-----cc--------cccceeeehhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998765332 1 00 1137899999999999999999999
Q ss_pred chHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 024069 196 FFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQIL-NVSCFFITLVAAIGSVAGVVLD 262 (273)
Q Consensus 196 ~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~~~~~l-~~~g~~~~v~gt~~si~~ii~~ 262 (273)
+|+++++++||+...++++++|+++|++++++++.+.+|+.++.+ .++|+++++....+++++++.+
T Consensus 370 fFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 370 FFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999998888 7999999999999999988753
No 4
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=2e-33 Score=268.07 Aligned_cols=206 Identities=17% Similarity=0.233 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCCCCCh
Q 024069 34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPY 113 (273)
Q Consensus 34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~~~~~ 113 (273)
+.+.++|+++|||.||.+.+|+++|||+| +.+||.+++..++.++.++|..+|++||++||+++++++++|++|. ++
T Consensus 257 ~~~~algi~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~-~~ 333 (467)
T PTZ00206 257 RAIEGLGVFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPV-NE 333 (467)
T ss_pred HHHhhhhHHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCC-CC
Confidence 57899999999999999999999999995 5589999999999999999999999999999999999999999432 23
Q ss_pred HHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHHHHHHHHhh
Q 024069 114 WLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISML 193 (273)
Q Consensus 114 ~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iAi~ 193 (273)
....++++++.++++.+||++.+|+++.+++.+..+ +. + .+ .+++...+..++++++++|++
T Consensus 334 ~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~--~~-----~----~~-------~~~~~~~~~~l~~~~l~iAi~ 395 (467)
T PTZ00206 334 PAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD--AR-----K----VA-------FWKHCIAVVTLSVVMLLCGLF 395 (467)
T ss_pred chhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC--cc-----c----Cc-------hhhHHHHHHHHHHHHHHHHhc
Confidence 445677888888999999999999999998876321 10 1 01 255666677778888999999
Q ss_pred ccchHHHHHHhhhhhhhhHHHHHHHHHHHHHh---cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024069 194 LPFFNDVVGILGAMGFWPLTVYFPIEMYKAQK---KIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVV 260 (273)
Q Consensus 194 iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~---~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~ii 260 (273)
+|+++.++||+||++++.++|++|+++|++.. +++....+|+.+++++++|++.++.|||+|+.+.+
T Consensus 396 vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 396 IPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred cCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 99999999999999999999999999999842 22223334567899999999999999999998876
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.96 E-value=2e-31 Score=249.05 Aligned_cols=215 Identities=27% Similarity=0.381 Sum_probs=178.8
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCC
Q 024069 30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGF 109 (273)
Q Consensus 30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~ 109 (273)
.+.++.+.++|+++|||.||.++||+++|||+| ...+++.++...++.+++++|+.+|.+||++||+++++++++|++
T Consensus 189 ~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~-~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~- 266 (409)
T PF01490_consen 189 ISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP-SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP- 266 (409)
T ss_pred chhhHHHHhhhhhhhhhhcccccceeeeeccCC-ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC-
Confidence 566789999999999999999999999999997 222456699999999999999999999999999999999999997
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHHHHHH
Q 024069 110 YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTL 189 (273)
Q Consensus 110 ~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~ 189 (273)
++++...++++++.++.+.+||++.+|.++.+|+.+.++.+..+. +.+.. ...+++|..+|+.+++++++
T Consensus 267 -~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~ 336 (409)
T PF01490_consen 267 -NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRD-SPKNT--------PSSRWLRYLIRIILVLLSFL 336 (409)
T ss_pred -CcccccccccccchhhhhhccccccchhHhhhhhheecccccccc-ccccc--------cccceeeeeeecchhhhhhh
Confidence 344677899999999999999999999999999988653000000 00000 11147889999999999999
Q ss_pred HHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 024069 190 ISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWL-----GLQILNVSCFFITLVAAIGSV 256 (273)
Q Consensus 190 iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~-----~~~~l~~~g~~~~v~gt~~si 256 (273)
+|+.+|+++++++++||++++.++|++|+++|++.++++++..+++ .++..+++|++.++.|+|.++
T Consensus 337 iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 337 IAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred hhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 9999999999999999999999999999999999987665433332 356667889999999998876
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.96 E-value=7.6e-31 Score=233.01 Aligned_cols=217 Identities=18% Similarity=0.266 Sum_probs=185.3
Q ss_pred HHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCCCCChHHH
Q 024069 37 QALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLI 116 (273)
Q Consensus 37 ~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~~~~~~~~ 116 (273)
.++|.++|+|+.|..+|+++.+|++| .+|.-.+.++-+...++-..+|.+||++|||++|+.|++|+| +..++
T Consensus 306 isvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk 378 (524)
T KOG4303|consen 306 ISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFK 378 (524)
T ss_pred eEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchh
Confidence 56788999999999999999999997 477777888889999999999999999999999999999996 44577
Q ss_pred HHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHHHHHHHHhhccc
Q 024069 117 DIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF 196 (273)
Q Consensus 117 ~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iAi~iP~ 196 (273)
.++|+++++..+.|||+-.+.+.+.+|+-+.+-.|+..+ ..-|+ ++..++.+.+-+|..+++++.++|+.+|+
T Consensus 379 ~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~F-pscys------~Dg~Lk~WgltlR~~lvvfTllmAi~vPh 451 (524)
T KOG4303|consen 379 ILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPF-PSCYS------PDGSLKEWGLTLRIILVVFTLLMAISVPH 451 (524)
T ss_pred hhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCC-ceeeC------CCcchhhheeeeeeHHHHHHHHHHHHhHH
Confidence 899999999999999998888888888876654454332 11121 23333455566899999999999999999
Q ss_pred hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 024069 197 FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYK 267 (273)
Q Consensus 197 f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~ii~~~~~~~ 267 (273)
|..++|++|+++++.++|+.|++||++++++.....+..++..+++.|..++|.|.|.|.+++|+++++.-
T Consensus 452 f~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~ 522 (524)
T KOG4303|consen 452 FVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSAD 522 (524)
T ss_pred HHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence 99999999999999999999999999998776655566688999999999999999999999999998743
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.93 E-value=3.7e-25 Score=206.75 Aligned_cols=213 Identities=19% Similarity=0.313 Sum_probs=176.2
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCC
Q 024069 30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGF 109 (273)
Q Consensus 30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~ 109 (273)
..+++.+.++++++|||.||.+..++++|||+ |+++++.++...+...+..+|..+|.+||+.|||++++|++.++|.
T Consensus 191 ~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~--~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~ 268 (411)
T KOG1305|consen 191 SSFSSLFYALPIFVFAFTCHSNVFPIYNELKD--RSVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDS 268 (411)
T ss_pred chhhhhhhhhhhhheeeeccccceeeeeeeeC--chHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCc
Confidence 33378999999999999999999999999999 5779999999999999999999999999999999999999999873
Q ss_pred CCCh----HHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHHHH
Q 024069 110 YNPY----WLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVV 185 (273)
Q Consensus 110 ~~~~----~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~ 185 (273)
..+. +....++..+.++.+..+|+..+|.+..+++.+.+..|+.+ + ++ +.++++++..++.
T Consensus 269 ~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~----~-----~s------~~r~~~itl~ll~ 333 (411)
T KOG1305|consen 269 ILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLT----S-----FS------GKRHFVITLLLLI 333 (411)
T ss_pred ccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCC----C-----cc------ceehhHHHHHHHH
Confidence 2221 23467888999999999999999999999988876544411 0 00 2456677888999
Q ss_pred HHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024069 186 LTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVL 261 (273)
Q Consensus 186 ~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~~~~~l~~~g~~~~v~gt~~si~~ii~ 261 (273)
++.+.|+.+|+++++++++||++++.++|++|+++|++.++.+ ++.....+...++++..+++|+..-+.++..
T Consensus 334 ~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 407 (411)
T KOG1305|consen 334 FTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKKK--SREPLGALIFLILGVLLSIIGVAVMIYDLLA 407 (411)
T ss_pred HHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeeccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987762 2233345566678888888877766666543
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.50 E-value=1.4e-12 Score=123.12 Aligned_cols=206 Identities=16% Similarity=0.161 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCC
Q 024069 30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGF 109 (273)
Q Consensus 30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~ 109 (273)
....+...++++++|||++|+++|++++|||++ ++++.+|+...+..+..++|..++..+|..+|+.+.++++++.+
T Consensus 190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~- 266 (415)
T COG0814 190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE- 266 (415)
T ss_pred hhHHHHHHHhhHHHhhhhCCccchHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC-
Confidence 444567899999999999999999999999994 43349999999999999999999999999999999999999986
Q ss_pred CCChHHHHHHHHHHHHHHHhhhhccchhh--------------HHHHHHHHhccCCCCcccCCcccccCCCccccccchh
Q 024069 110 YNPYWLIDIANAAIVVHLVGAYQVFCQPL--------------FAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLF 175 (273)
Q Consensus 110 ~~~~~~~~i~~~~~~i~~~~s~pl~~~p~--------------~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 175 (273)
+++.. .............+++.+.++. +|..+..+++ .+++ + .+ .. .+.
T Consensus 267 -~~~~~-l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~--~~~~----~-~r-------~~-~~~ 329 (415)
T COG0814 267 -QNISL-LSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKK--SNSK----P-GR-------KK-TGL 329 (415)
T ss_pred -chHHH-HHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHh--ccCc----c-cc-------hh-hhh
Confidence 22211 1111111112223333333333 3444444432 0100 0 00 00 122
Q ss_pred h--hHHHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 024069 176 R--LVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAI 253 (273)
Q Consensus 176 r--~~~r~~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~~~~~l~~~g~~~~v~gt~ 253 (273)
+ ...........+..+...|..+.+++.+|+.....+.++.|...+.+....+.+..++..+.+++++|+..++.-.+
T Consensus 330 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~ 409 (415)
T COG0814 330 LTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL 409 (415)
T ss_pred hhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence 2 22345566677788889999999999999999999999999988876643332221113566777788777766554
Q ss_pred HH
Q 024069 254 GS 255 (273)
Q Consensus 254 ~s 255 (273)
++
T Consensus 410 ~~ 411 (415)
T COG0814 410 AT 411 (415)
T ss_pred HH
Confidence 43
No 9
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.02 E-value=6.9e-09 Score=96.63 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccc-------
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLL------- 104 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il------- 104 (273)
..+.+.+++...++|+.|++++++.++|++| +|+.+|++..+..+++++|+.+........+.+.-++..
T Consensus 177 ~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~ 253 (381)
T TIGR00837 177 WPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLD 253 (381)
T ss_pred HHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChH
Confidence 3467788999999999998999999999874 379999999999999999998865555444433211111
Q ss_pred ---cccC-CCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHH
Q 024069 105 ---TGFG-FYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWR 180 (273)
Q Consensus 105 ---~~l~-~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r 180 (273)
+.+. ..+..|...+..++..+.+..|+.-.....+|.++..+++. + + + ..|....
T Consensus 254 ~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~--~-~---~---------------~~~~~~~ 312 (381)
T TIGR00837 254 GLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD--D-S---K---------------KGRFKTG 312 (381)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--c-c---c---------------CCCchhh
Confidence 1110 01233555677777778888888877777788877766542 1 0 0 1234445
Q ss_pred HHHHHHHHHHHhhccchH-HHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q 024069 181 TLFVVLTTLISMLLPFFN-DVVGILGAMGFWPLTVYFPIEMYKAQKKI 227 (273)
Q Consensus 181 ~~~v~~~~~iAi~iP~f~-~ll~lvGa~~~~~l~fi~P~l~~l~l~~~ 227 (273)
.+..+...++|...|+-. ..++..| +..+.+.+++|++++++.|++
T Consensus 313 ~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 313 LLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 566678888899999866 9999999 888999999999999988764
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.74 E-value=1.1e-06 Score=82.70 Aligned_cols=173 Identities=19% Similarity=0.261 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhh--hhhh---------hcccCCC
Q 024069 30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMG---------YAAFGDL 98 (273)
Q Consensus 30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~v--g~~G---------Y~~fG~~ 98 (273)
.+.-..+.++++.++||+.|+++|++.+.+++. .++.+|++..+..+..++|+.. .++| -...|++
T Consensus 181 ~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~ 257 (394)
T PF03222_consen 181 SDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGN 257 (394)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCC
Confidence 455567799999999999999999999999973 3789999999988888888765 2333 1112222
Q ss_pred CCc--ccccccCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhh
Q 024069 99 APN--NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFR 176 (273)
Q Consensus 99 v~~--~il~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r 176 (273)
+.+ ..+.+.. ++.+...+..++..+.+.+||-=...-.+|.++..++. +++ ...|
T Consensus 258 ~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r 314 (394)
T PF03222_consen 258 VSALVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGR 314 (394)
T ss_pred hHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccch
Confidence 211 1222221 33455667778777888888866666678888777653 121 0223
Q ss_pred hHHHHHHHHHHHHHHhhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 024069 177 LVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR 229 (273)
Q Consensus 177 ~~~r~~~v~~~~~iAi~iP~-f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~ 229 (273)
...-....+-.+++|...|+ |-..+++.| ...+.+..++|+++..|.|++++
T Consensus 315 ~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 315 LKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 33334455667888999996 889999999 99999999999999999876543
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.57 E-value=2.3e-06 Score=80.49 Aligned_cols=190 Identities=12% Similarity=0.121 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCC-----C-----cccc
Q 024069 35 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-----P-----NNLL 104 (273)
Q Consensus 35 ~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v-----~-----~~il 104 (273)
.+.+++++++||+-|+++|++.+.+++. .++.+|++..+..+..++|+..=......-+.+. + ++++
T Consensus 183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l 259 (403)
T PRK15132 183 ALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL 259 (403)
T ss_pred HHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence 6789999999999999999999999862 3789999999999999988866444333333221 1 1222
Q ss_pred cccCC-CCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHHH
Q 024069 105 TGFGF-YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLF 183 (273)
Q Consensus 105 ~~l~~-~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~ 183 (273)
..+.. .+..+...+..++..+.+..||-=...-.+|.++..++++ + + ...|...-.+.
T Consensus 260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~------~-------------~~~r~~~~~l~ 318 (403)
T PRK15132 260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR--N------T-------------VGGRLQTGLIT 318 (403)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--c------c-------------ccCCchhehhh
Confidence 22210 1234666677777777888888666666778887766532 1 0 02244445566
Q ss_pred HHHHHHHHhhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCC-Cchh----hHHHHHHHHHHHHHHHH
Q 024069 184 VVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIG-RGTT----RWLGLQILNVSCFFITL 249 (273)
Q Consensus 184 v~~~~~iAi~iP~-f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~-~~~~----~~~~~~~l~~~g~~~~v 249 (273)
.+-.+++|...|+ |...++..|.. .+.+.+++|+++-.|.|+.+ .... .+..+++.+++|++..+
T Consensus 319 flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~ 389 (403)
T PRK15132 319 FLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIG 389 (403)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHH
Confidence 7888899999997 88899999875 68999999999998887543 2111 23345555555555433
No 12
>PRK10483 tryptophan permease; Provisional
Probab=98.35 E-value=2.4e-05 Score=73.71 Aligned_cols=168 Identities=15% Similarity=0.141 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhh--hhhhhc---------ccCCCCCcc
Q 024069 34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMGYA---------AFGDLAPNN 102 (273)
Q Consensus 34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~v--g~~GY~---------~fG~~v~~~ 102 (273)
..+.+++++++||+.|+++|++.+.+++. + ++.+|++..+..+..++|+.. .++|=. .-|+++ +.
T Consensus 193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d-~--~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~ 268 (414)
T PRK10483 193 YLLMTLPFCLASFGYHGNVPSLMKYYGKD-P--KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DV 268 (414)
T ss_pred HHHHHHHHHHhhccCCCcchHHHHHhCcC-H--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HH
Confidence 46799999999999999999999999873 2 689999999999999999874 222211 123332 11
Q ss_pred cccccCC-CCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHH
Q 024069 103 LLTGFGF-YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRT 181 (273)
Q Consensus 103 il~~l~~-~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~ 181 (273)
.+..+.. .++.+...+..++..+.+..||-=...-.+|.++..++.+ ++. ..|...-.
T Consensus 269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~~-------------------~~r~~~~~ 327 (414)
T PRK10483 269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD--DSA-------------------MGRFKTAL 327 (414)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeeh
Confidence 1122210 1233555566777777788888666667788888776542 210 12322333
Q ss_pred HHHHHHHHHHhhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q 024069 182 LFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKI 227 (273)
Q Consensus 182 ~~v~~~~~iAi~iP~-f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~ 227 (273)
+..+-..++|...|+ |-..++..|.. .+.+.-++|+++-.+.|++
T Consensus 328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 456778889999998 88899999987 5677789999999988764
No 13
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.14 E-value=0.00013 Score=68.85 Aligned_cols=169 Identities=14% Similarity=0.088 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhh--hhhh---------hcccCCCCCcc
Q 024069 34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC--GCMG---------YAAFGDLAPNN 102 (273)
Q Consensus 34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~v--g~~G---------Y~~fG~~v~~~ 102 (273)
..+.+++++++||+.|+++|++.+.+++. .++-+|++.....+..++|+.. .+.| -...|+++.+-
T Consensus 194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l 270 (415)
T PRK09664 194 YIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL 270 (415)
T ss_pred HHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence 46679999999999999999999999863 2678888888888888888644 2222 12233333321
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHHH
Q 024069 103 LLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTL 182 (273)
Q Consensus 103 il~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~ 182 (273)
+..-....+..+...+..++..+.+..||-=...-.+|.+...++.+ +++ ..|...-.+
T Consensus 271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~~-------------------~~r~~~~~l 329 (415)
T PRK09664 271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID--NSH-------------------GGRFKTVLL 329 (415)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeehh
Confidence 11100001234666677777777888888666667788887776542 210 123333334
Q ss_pred HHHHHHHHHhhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q 024069 183 FVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKI 227 (273)
Q Consensus 183 ~v~~~~~iAi~iP~-f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~ 227 (273)
..+-..+.|...|+ |=..++..|.. .+.+.-++|+++-.|.|++
T Consensus 330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 56778888999998 88899999997 5688889999999998864
No 14
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.95 E-value=0.00068 Score=65.11 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=44.1
Q ss_pred HHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccC
Q 024069 40 GAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 96 (273)
Q Consensus 40 g~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG 96 (273)
..+.|+|.|-.......+|+|||+ |+.+|++..+..++.++|....+.-...-+
T Consensus 201 ~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 201 ASIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 346789999999999999999983 799999999999999999876544333333
No 15
>PRK11021 putative transporter; Provisional
Probab=97.94 E-value=0.0017 Score=61.15 Aligned_cols=65 Identities=15% Similarity=0.406 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh--hhcccCC
Q 024069 30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM--GYAAFGD 97 (273)
Q Consensus 30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~--GY~~fG~ 97 (273)
.++.+.+.++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|...... ++..++|
T Consensus 174 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~ 240 (410)
T PRK11021 174 IEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVVVLHFPAYGD 240 (410)
T ss_pred ccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3455677889999999999999999999999983 799999999999999999987654 3333444
No 16
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.88 E-value=0.0011 Score=63.09 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 90 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~ 90 (273)
+.....++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|.++.+.
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~ 245 (445)
T PRK10644 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTA 245 (445)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHH
Confidence 33455678889999999999999999999983 799999999999999999988665
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=97.88 E-value=0.0017 Score=61.77 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069 30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 92 (273)
Q Consensus 30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY 92 (273)
.+..+.+.++....|+|.|-.......+|+|||+ |+.+|++..+..++.++|........
T Consensus 184 ~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~ 243 (435)
T PRK10435 184 TDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVIS 243 (435)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999999999999999999983 79999999999999999998866543
No 18
>PRK10655 potE putrescine transporter; Provisional
Probab=97.86 E-value=0.0016 Score=61.82 Aligned_cols=57 Identities=11% Similarity=0.065 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069 33 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 92 (273)
Q Consensus 33 ~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY 92 (273)
.+...++....|+|.|-.....+-+|+|||+ |+.+|++..+..++.++|.+......
T Consensus 189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999983 79999999999999999988754433
No 19
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.86 E-value=0.0012 Score=63.07 Aligned_cols=57 Identities=21% Similarity=0.170 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 90 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~ 90 (273)
.+.+.+.++....|+|.|-.......+|+|||+ |+.+|++..+...+.++|....+.
T Consensus 179 g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai~~~~~~i~i~Yil~~~~ 235 (446)
T PRK10197 179 GFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRATNSVIWRISIFYLCSIFV 235 (446)
T ss_pred cHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677999999999999999999999999983 789999999999889999876444
No 20
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=97.86 E-value=9.7e-05 Score=69.57 Aligned_cols=179 Identities=9% Similarity=0.088 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhh----hcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCC-----cc
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDT----IRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP-----NN 102 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~----M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~-----~~ 102 (273)
..+...+++..++||.+|+.+|+...+ .+||+...+|-+|++..+..+..++|+..-..+-...+.+.- ++
T Consensus 185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n 264 (397)
T TIGR00814 185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN 264 (397)
T ss_pred HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence 446779999999999999999999733 332212246778888888888888887765554444444321 11
Q ss_pred --cccccC-CCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccC-CCCcccCCcccccCCCccccccchhhhH
Q 024069 103 --LLTGFG-FYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKW-PKSDLVTAEYEIPIPFWGVYQLNLFRLV 178 (273)
Q Consensus 103 --il~~l~-~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~r~~ 178 (273)
++..+. ..+..+...+..+...+.+..||-=...-++|.++..+.+.. ++.+ + . + .+..+..
T Consensus 265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~----~--~--~------~~~~~~~ 330 (397)
T TIGR00814 265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGK----K--I--N------IRKLNRA 330 (397)
T ss_pred cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccc----c--c--C------HHHHHHH
Confidence 111110 012224444555555666777776666777888888773211 1111 0 0 0 0233445
Q ss_pred HHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 024069 179 WRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQ 224 (273)
Q Consensus 179 ~r~~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l 224 (273)
.-.+..+.++.+|..=|+.=+++.-+|+--.+.+.|++|...-.|.
T Consensus 331 ~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 331 IAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 5566778888888888998888887777777888899999766654
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=97.82 E-value=0.0012 Score=64.00 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 92 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY 92 (273)
.+.+.+.++...+|+|.|-......-+|+|||+ |+.+|++..+...+.++|........
T Consensus 218 g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~ 276 (499)
T PRK15049 218 GLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLV 276 (499)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777789999999999999999999973 78999999988888888887654433
No 22
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=97.81 E-value=0.00067 Score=64.39 Aligned_cols=200 Identities=11% Similarity=0.099 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHhccchhhHHHHhhhcCC-------cccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCC-----Cc
Q 024069 34 RSLQALGAIAFAYSFSIILLEIQDTIRSP-------PAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-----PN 101 (273)
Q Consensus 34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P-------~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v-----~~ 101 (273)
....++++++|||+-|+.+|++...+|+- +...+|-+|++..+..+..++|+..-..+-..-+.+- ++
T Consensus 210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q 289 (443)
T PRK13629 210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ 289 (443)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 46789999999999999999999985441 0114778888888888888888876544444433322 11
Q ss_pred cc--c----cccCCC-CC-----hHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhc-c-CCCCcccCCcccccCCCc
Q 024069 102 NL--L----TGFGFY-NP-----YWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-K-WPKSDLVTAEYEIPIPFW 167 (273)
Q Consensus 102 ~i--l----~~l~~~-~~-----~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~-~-~~~~~~~~~~~~~~~p~~ 167 (273)
|+ + +.++.. +. .+...+..+...+.+..||-=...-++|.++.+..+ . .++.+ + .
T Consensus 290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~----~--~----- 358 (443)
T PRK13629 290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKT----K--V----- 358 (443)
T ss_pred CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----c--c-----
Confidence 11 1 112100 01 234445555556677777765566778888887732 1 11111 0 0
Q ss_pred cccccchhhhHHHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHH
Q 024069 168 GVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFI 247 (273)
Q Consensus 168 ~~~~~~~~r~~~r~~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~~~~~~~~~~~l~~~g~~~ 247 (273)
..+..+.+...+..+.++++|..=|+.=+++.-+|+--.+.+.|++|...-.|....++.+ .+..|+++.+.|++.
T Consensus 359 ---~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~ 434 (443)
T PRK13629 359 ---SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLT 434 (443)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHH
Confidence 0024455566677888889999989988888877777778899999997766543222211 123467777777654
Q ss_pred H
Q 024069 248 T 248 (273)
Q Consensus 248 ~ 248 (273)
.
T Consensus 435 i 435 (443)
T PRK13629 435 I 435 (443)
T ss_pred H
Confidence 3
No 23
>PRK10249 phenylalanine transporter; Provisional
Probab=97.80 E-value=0.002 Score=61.78 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhh
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 91 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~G 91 (273)
.+-+.+.++....|+|.|-.......+|+|||+ |+.+|++..+.....++|.......
T Consensus 207 g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~~ 264 (458)
T PRK10249 207 GWNGLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVVL 264 (458)
T ss_pred cHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999999999999999999999973 7899999999999999998754433
No 24
>PRK10746 putative transport protein YifK; Provisional
Probab=97.77 E-value=0.0019 Score=61.97 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 89 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~ 89 (273)
.+.+...++....|+|.|-.......+|+|||+ |+.+|++..+...+.++|.....
T Consensus 198 g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~~ 253 (461)
T PRK10746 198 GWKGFLTALCIVVASYQGVELIGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAIF 253 (461)
T ss_pred cHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667899999999999999999999999983 89999998888888888876543
No 25
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.72 E-value=0.004 Score=59.78 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccC
Q 024069 34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 96 (273)
Q Consensus 34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG 96 (273)
+...++....|+|.|-.....+.+|+||+ |+.+|++..+...+.++|..+.+..+...+
T Consensus 196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 44578889999999999888888898873 799999999999999999988766554433
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.65 E-value=0.0037 Score=60.04 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 92 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY 92 (273)
.+.+.+.++....|+|.|-......-+|+|||+ |+.+|++..+.....++|......-+
T Consensus 209 g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 209 GLSGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred cHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 344677889999999999999999999999973 78999998777777888876655443
No 27
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.63 E-value=0.0027 Score=60.80 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhh
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC 87 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~v 87 (273)
+.+...+++...|+|.|-.......+|+|||+ |+.+|++..+.....++|...
T Consensus 199 ~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 199 FTGLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence 44566778889999999999999999999973 789999988888777777654
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.59 E-value=0.0054 Score=58.92 Aligned_cols=57 Identities=18% Similarity=0.118 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhh
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 91 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~G 91 (273)
..+.+.++....|+|.|-......-+|+|||+ |+.+|++..+..++.++|+......
T Consensus 205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~ 261 (471)
T PRK11387 205 GLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVL 261 (471)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999999973 7899999999999999998876543
No 29
>PRK10580 proY putative proline-specific permease; Provisional
Probab=97.54 E-value=0.0061 Score=58.27 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 89 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~ 89 (273)
.+.+.+.++....|+|.|-.......+|+|||+ |+.+|++..+...+.++|.....
T Consensus 197 g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~~ 252 (457)
T PRK10580 197 GWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPE---KSIPRAINSVPMRILVFYVGTLF 252 (457)
T ss_pred chHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888999999999999999999999973 78999998887777777776643
No 30
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.51 E-value=0.0085 Score=57.52 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 89 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~ 89 (273)
+.+...++....|+|.|-.....+-+|+|||+ |+.+|++..+..++.++|.....
T Consensus 196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~ 250 (478)
T TIGR00913 196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLF 250 (478)
T ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888999999999999999999999973 79999999999999999998754
No 31
>PRK10836 lysine transporter; Provisional
Probab=97.45 E-value=0.012 Score=56.91 Aligned_cols=60 Identities=10% Similarity=0.080 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcc
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 94 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~ 94 (273)
+.+.+.+.....|+|.|-......-+|+|||+ |+.+|++..+...+.++|......-...
T Consensus 204 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 204 FAAMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 44455566667899999999999999999973 7999999999999999999775543333
No 32
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.45 E-value=0.0069 Score=57.62 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 90 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~ 90 (273)
+.+.+.++....|+|.|-.......+|+|||+ |+.+|++..+..++.++|......
T Consensus 194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 194 FMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHH
Confidence 44566888899999999999999999999973 799999999999999999887553
No 33
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=97.41 E-value=0.0086 Score=57.09 Aligned_cols=60 Identities=22% Similarity=0.139 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhc
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYA 93 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~ 93 (273)
.+.+.+.++....|+|.|-.....+.+|+|||+ |+.+|++..+......+|+........
T Consensus 199 g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~ 258 (452)
T TIGR01773 199 GIGAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVVA 258 (452)
T ss_pred cHHHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 344677899999999999999999999999973 799999988888888888876544433
No 34
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.39 E-value=0.016 Score=55.73 Aligned_cols=60 Identities=12% Similarity=0.045 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccC
Q 024069 34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 96 (273)
Q Consensus 34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG 96 (273)
..+.++....|+|.|-......-+|+|||+ |+.+|++..+..++.+++.+..+.-+...|
T Consensus 218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 218 AFLLGLLNPAWSMTGYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhhhhhhHHHhcCcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 455666678899999999999999999973 799999999888776654443333333344
No 35
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=97.36 E-value=0.021 Score=54.29 Aligned_cols=56 Identities=5% Similarity=-0.002 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 89 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~ 89 (273)
.+.+.+.++...+|+|.|.......-+|+|||+ |+.+|++..+..++.++|+..-.
T Consensus 189 ~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 189 AYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence 345677888889999999999999999999983 78999999999988888876643
No 36
>TIGR00909 2A0306 amino acid transporter.
Probab=97.34 E-value=0.018 Score=54.37 Aligned_cols=59 Identities=20% Similarity=0.286 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 92 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY 92 (273)
+..+.+.++...+|+|.|........+|+|||+ |+.+|++..+..++.++|........
T Consensus 193 ~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~ 251 (429)
T TIGR00909 193 GFGGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL 251 (429)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 444667888899999999999999999999972 78999999999999999998865444
No 37
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.32 E-value=0.018 Score=60.13 Aligned_cols=53 Identities=23% Similarity=0.305 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh
Q 024069 35 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 90 (273)
Q Consensus 35 ~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~ 90 (273)
.+..++++.+||+|-.....+-+|+|||+ ++.++++..+..+++++|+++.+.
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999988999999999983 799999999999999999998753
No 38
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=97.32 E-value=0.0066 Score=59.71 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhh
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 90 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~ 90 (273)
.+.+.+.+.....|+|.|-......-+|+|||+ |+.+|++..+..+++++|..+.+.
T Consensus 229 g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~ 285 (557)
T TIGR00906 229 GFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA 285 (557)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 345678889999999999999999999999983 789999999999999999987644
No 39
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.31 E-value=0.015 Score=54.74 Aligned_cols=58 Identities=24% Similarity=0.347 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCC
Q 024069 35 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 97 (273)
Q Consensus 35 ~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~ 97 (273)
.+.++...+|+|.|-.......+|+|| |+.+|++..+..++.++|......-....++
T Consensus 190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~ 247 (426)
T PF13520_consen 190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPD 247 (426)
T ss_dssp HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccc
Confidence 468888999999999999999999887 7999999999999999999886655555444
No 40
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=97.22 E-value=0.034 Score=53.42 Aligned_cols=57 Identities=9% Similarity=0.080 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 92 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY 92 (273)
..+...++....|+|.|-.....+-+|+|| + |+.+|++..+..++.++|........
T Consensus 198 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~ 254 (473)
T TIGR00905 198 FSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVLGTLGALVIYILITLLSL 254 (473)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888899999999999999999998 3 79999999999999999988765433
No 41
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.11 E-value=0.04 Score=53.57 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhh
Q 024069 35 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCG 88 (273)
Q Consensus 35 ~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg 88 (273)
....+..++|+|.|-......-+|||||+ |+++|++..+..++.++|.+..
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~ 246 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG 246 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence 34455557999999999999999999983 7999999999998888887644
No 42
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=97.11 E-value=0.046 Score=52.91 Aligned_cols=54 Identities=22% Similarity=0.187 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069 33 WRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 89 (273)
Q Consensus 33 ~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~ 89 (273)
.+.+.++....|+|.|-.......+|+|||+ |+.+|++..+...+..+|.+..+
T Consensus 211 ~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 211 IAVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence 3456677889999999999999999999983 79999999999999999987644
No 43
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.69 E-value=0.04 Score=53.29 Aligned_cols=58 Identities=19% Similarity=0.173 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhh
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 91 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~G 91 (273)
+..+...++....|+|.|-.....+.+|+|||+ |+.+|++..+..++.++|.++...-
T Consensus 233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~ 290 (501)
T TIGR00911 233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAY 290 (501)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667889999999999999999999999983 7899999999999999999885443
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.66 E-value=0.16 Score=47.98 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCC
Q 024069 34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 97 (273)
Q Consensus 34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~ 97 (273)
....+++...++|.|-.......+|+|||+ |+.+|++..++.++.++|.......-...++
T Consensus 202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 202 GILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 577889999999999999999999999972 6899999999999999999998877777765
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.34 E-value=0.73 Score=44.28 Aligned_cols=56 Identities=13% Similarity=-0.069 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069 34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 92 (273)
Q Consensus 34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY 92 (273)
..+.+.....|+|.|-.....+-+|+|||+ |+.+|++..+..+..++|.+.-+...
T Consensus 214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~ 269 (475)
T TIGR03428 214 AFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILGAL 269 (475)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566678899999999999999999973 79999999999888776655544333
No 46
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.31 E-value=0.13 Score=49.36 Aligned_cols=179 Identities=16% Similarity=0.157 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCC
Q 024069 30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGF 109 (273)
Q Consensus 30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~ 109 (273)
.+.-+.-.++=...|||.|=..+..+-+|+|||+ |+++++...|+.+++++|..+=+..+.. -..+.++.+-..
T Consensus 201 ~~~g~i~lafysglfa~~GWd~lN~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~v---ls~~e~l~S~aV 274 (479)
T KOG1287|consen 201 TDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTV---LSPDEILSSDAV 274 (479)
T ss_pred CchHHHHHHHHHhhhcccCchhhccchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEe---cCHHHhcccchH
Confidence 3444556788889999999999999999999983 8999999999999999999986654422 223344333110
Q ss_pred -------CCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHh-ccCCCCcccCCccccc-CCCccccccchhhhHHH
Q 024069 110 -------YNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSA-KKWPKSDLVTAEYEIP-IPFWGVYQLNLFRLVWR 180 (273)
Q Consensus 110 -------~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~-~~~~~~~~~~~~~~~~-~p~~~~~~~~~~r~~~r 180 (273)
....+. -++.++..++.+.+.--.++...+.+...-. .+.|+ ..+..+..+ .| +..+
T Consensus 275 av~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~--~~s~i~~~~~TP--------~~al--- 340 (479)
T KOG1287|consen 275 AVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPA--FFSMISVRRFTP--------RPAL--- 340 (479)
T ss_pred HHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccH--HHHhhcCCCCCC--------hHHH---
Confidence 001111 1222222233333221111111111111111 11111 000000000 01 1111
Q ss_pred HHHHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 024069 181 TLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR 229 (273)
Q Consensus 181 ~~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~~~ 229 (273)
.+..+..++...+.+++.+++.++=.......+.+=+++|+|.|+++.
T Consensus 341 -lf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 341 -LFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 223334444455668999999999888888888899999999887664
No 47
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=95.96 E-value=0.12 Score=49.20 Aligned_cols=181 Identities=12% Similarity=0.155 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhH-----HHHHHHHHHHhhhhhhhhcccCCCCCc--
Q 024069 29 TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATL-----FSIIVTTTFYLLCGCMGYAAFGDLAPN-- 101 (273)
Q Consensus 29 ~~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~-----~s~~i~~~~y~~vg~~GY~~fG~~v~~-- 101 (273)
|..+.+.+.++-..+|||+|..++=.-.+|-+||+ |..+|+.+ +...-+..+.++..+.-|-.++++.+.
T Consensus 199 P~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV 275 (462)
T COG1113 199 PNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV 275 (462)
T ss_pred CCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH
Confidence 35666888999999999999999999999999983 67777764 444455555566677777777775544
Q ss_pred ccccccCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhhHHHH
Q 024069 102 NLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRT 181 (273)
Q Consensus 102 ~il~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~ 181 (273)
.+...++ -.+...+.|.........+.-=-++..-+.+..+-.+. ...+...+-.....| +.-+.+.+
T Consensus 276 ~~f~~iG---i~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g-~APk~~~klsk~gVP--------~~ai~~s~ 343 (462)
T COG1113 276 TVFSLIG---IPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQG-DAPKAFAKLSKRGVP--------VNAILLSA 343 (462)
T ss_pred HHHHHcC---CcccccceeEEEeechhhcccccccccchHHHHHhhcC-cccHhHhhccccCCC--------HHHHHHHH
Confidence 2223332 22222233322222222221111122233333332111 011111110001111 33455667
Q ss_pred HHHHHHHHHHhhccchHHHHHHhhhhhhhh--HHHHHHHHHHHHHhc
Q 024069 182 LFVVLTTLISMLLPFFNDVVGILGAMGFWP--LTVYFPIEMYKAQKK 226 (273)
Q Consensus 182 ~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~--l~fi~P~l~~l~l~~ 226 (273)
....++.++....| +.+..++-+.++.. ....+=.+.|+|.|+
T Consensus 344 ~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 344 VVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77788888888999 44444444433322 233344677777765
No 48
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.76 E-value=0.41 Score=47.10 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 89 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~ 89 (273)
+-+.+.++-+..|+|.|--.+-..-+|-|||| |+.+++...++..+..+|..+.+
T Consensus 231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~ 285 (554)
T KOG1286|consen 231 FKGVLSGAATAFFSFIGFELVATTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSI 285 (554)
T ss_pred cceeeHHHHHHHHHHhhHHHHHHHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999984 89999999999999999998864
No 49
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=93.72 E-value=0.068 Score=51.34 Aligned_cols=66 Identities=23% Similarity=0.199 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCC
Q 024069 31 KLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA 99 (273)
Q Consensus 31 ~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v 99 (273)
++.+.+.++...+++|.|-......-+|.|||+ |+.+|++..+.....++|.......=...|.+.
T Consensus 198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred chhHHHHhhhhhhcccccccccccccccCCCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 466788999999999999999999999999983 799999999999999999887654444444433
No 50
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=92.62 E-value=1.3 Score=40.69 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=47.5
Q ss_pred HHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCC
Q 024069 40 GAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA 99 (273)
Q Consensus 40 g~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v 99 (273)
....++|.|.....-...+++|| |+.+|+...+..++..+|..+-+..-..+|.+.
T Consensus 186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~ 241 (359)
T TIGR00912 186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV 241 (359)
T ss_pred HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence 46788998888888888899986 689999999999999999988887777787644
No 51
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=90.71 E-value=8.2 Score=37.77 Aligned_cols=180 Identities=15% Similarity=0.018 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhh-hhhhcccCCC----------
Q 024069 30 QKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCG-CMGYAAFGDL---------- 98 (273)
Q Consensus 30 ~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg-~~GY~~fG~~---------- 98 (273)
..+-+....+-+..|||+|..++---..|=+||+ |..+|+..-...=...+|...- ++|-.-=.+|
T Consensus 231 ~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~---K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~ 307 (541)
T COG0833 231 GGFKGFCSVFVIAAFSFSGTELVGLAAGESENPR---KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSG 307 (541)
T ss_pred cchHHHHHHHhhheeeeeceeeeeeeecccCCch---hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCC
Confidence 4466778889999999999999888889999983 7899998877777777776432 2222222222
Q ss_pred -CCcccccccCCCCChHHHHHHHHHHHHHHHhhhhccchhhHHHHHHHHhccCCCCcccCCcccccCCCccccccchhhh
Q 024069 99 -APNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRL 177 (273)
Q Consensus 99 -v~~~il~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~ 177 (273)
.++|....+...+-...-.+.|+.+..+++.+--=.++..-+.+..+-.... .++...+ .+++..+..-
T Consensus 308 ~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~-APk~f~~---------~~r~GvP~~a 377 (541)
T COG0833 308 VAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGK-APKIFAK---------VDRRGVPLVA 377 (541)
T ss_pred ccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCC-CchHHHh---------hCCCCCchHH
Confidence 1223222221001123345666666655554432223333455544433211 1111111 0111123333
Q ss_pred H-HHHHHHHHHHHHHhhccc---hHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q 024069 178 V-WRTLFVVLTTLISMLLPF---FNDVVGILGAMGFWPLTVYFPIEMYKAQK 225 (273)
Q Consensus 178 ~-~r~~~v~~~~~iAi~iP~---f~~ll~lvGa~~~~~l~fi~P~l~~l~l~ 225 (273)
+ ++.++-+++++.+.. +. |+-++++.|..+ .++-+.=++.|++.|
T Consensus 378 l~vt~~fg~lafl~~~~-~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR 426 (541)
T COG0833 378 LLVTLLFGLLAFLNSSF-KETTVFNWLLNISGLSG--FIAWGSICLSHIRFR 426 (541)
T ss_pred HHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 3 444444555544444 43 778888887655 455555567777654
No 52
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=79.79 E-value=24 Score=36.19 Aligned_cols=73 Identities=19% Similarity=0.357 Sum_probs=39.9
Q ss_pred HhhhcCCcccccchhhhhHHHHHHHHHHHhhhhh-hhhc--------ccCCCCCcccccc-cCCCCChHHHHHHHH----
Q 024069 56 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC-MGYA--------AFGDLAPNNLLTG-FGFYNPYWLIDIANA---- 121 (273)
Q Consensus 56 ~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~-~GY~--------~fG~~v~~~il~~-l~~~~~~~~~~i~~~---- 121 (273)
-.++|||| |..+.....+......+|+...+ +|-. -||+.+.++..-. +. -+..|...+...
T Consensus 433 SGDLkDaQ---kSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~la-WPsPwVi~IGsFlST~ 508 (1075)
T KOG2082|consen 433 SGDLKDAQ---KSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLA-WPSPWVIVIGSFLSTC 508 (1075)
T ss_pred Cccccchh---hcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEec-CCCceeeehhHHHHHh
Confidence 46788874 67777778888877778875532 2211 2566666654322 21 123354444332
Q ss_pred HHHHHHHhhhh
Q 024069 122 AIVVHLVGAYQ 132 (273)
Q Consensus 122 ~~~i~~~~s~p 132 (273)
...++.+++-|
T Consensus 509 GAgLQsLtgAP 519 (1075)
T KOG2082|consen 509 GAGLQSLTGAP 519 (1075)
T ss_pred HHHHhhhcCcH
Confidence 23455566555
No 53
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=79.15 E-value=5.2 Score=34.90 Aligned_cols=81 Identities=11% Similarity=0.111 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhccchHHHHHHh---------hhhhhhhHHHHHHHHHHHHHhcCCCc-----hhhHHHHHHHHHHHH
Q 024069 180 RTLFVVLTTLISMLLPFFNDVVGIL---------GAMGFWPLTVYFPIEMYKAQKKIGRG-----TTRWLGLQILNVSCF 245 (273)
Q Consensus 180 r~~~v~~~~~iAi~iP~f~~ll~lv---------Ga~~~~~l~fi~P~l~~l~l~~~~~~-----~~~~~~~~~l~~~g~ 245 (273)
.-...+.++++|..++.++-++..+ ||.++..|+++= |..+-+.+.. .-++|+.|+++++|+
T Consensus 159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ 234 (262)
T KOG4812|consen 159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGL 234 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHH
Confidence 3455677888899999999888776 777777777764 4444322211 124566677788898
Q ss_pred HHHHHHHH--HHHHHHHHhhc
Q 024069 246 FITLVAAI--GSVAGVVLDLK 264 (273)
Q Consensus 246 ~~~v~gt~--~si~~ii~~~~ 264 (273)
++..-|++ ..|+.+-+.+.
T Consensus 235 ll~lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 235 LLFLRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHHHHHhHHHHhhHHHHHh
Confidence 88777665 55555544443
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=77.34 E-value=42 Score=33.04 Aligned_cols=81 Identities=12% Similarity=0.028 Sum_probs=58.2
Q ss_pred EEEEeeeeecccccCchhHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhh
Q 024069 13 VIFCGLIQYLNLFVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 92 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY 92 (273)
.|+-....|.+++ .+-|....++-.-+.+..|--.-..+.+|-+|+ + ++-+|++..+..+..++=.++-+.--
T Consensus 236 ~iF~~f~N~sgw~----~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA--s-k~aPrgIi~s~~i~~i~gw~~~I~i~ 308 (550)
T KOG1289|consen 236 FIFGKFNNYSGWK----NNGWAFILGFFNPAWTMSGYDAAAHMAEETKNA--S-KAAPRGIISSIAIGFILGWIIIIGIA 308 (550)
T ss_pred eeeecccccCCCC----cchHHHHHhhccceeEEeccCchHHHHHHhcch--h-hhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554 367777788888888888888889999999996 3 78899988888777777666666666
Q ss_pred cccCCCCC
Q 024069 93 AAFGDLAP 100 (273)
Q Consensus 93 ~~fG~~v~ 100 (273)
.+-++|..
T Consensus 309 ~~i~~D~~ 316 (550)
T KOG1289|consen 309 YTIPDDLD 316 (550)
T ss_pred HhccchHH
Confidence 66675443
No 55
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=73.47 E-value=4 Score=26.14 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=27.0
Q ss_pred chhhhhHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 024069 68 TMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP 100 (273)
Q Consensus 68 ~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~ 100 (273)
.|..+..+++.+.+++..++|...|-+||.-.+
T Consensus 3 ~me~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 3 AMSPALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred ccchhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 356678888889999999999999999997543
No 56
>CHL00020 psbN photosystem II protein N
Probab=69.25 E-value=4.3 Score=25.62 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhcccCCCC
Q 024069 71 KATLFSIIVTTTFYLLCGCMGYAAFGDLA 99 (273)
Q Consensus 71 ~~~~~s~~i~~~~y~~vg~~GY~~fG~~v 99 (273)
.+...++.+.+++..++|...|-+||.-.
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 45677788888888889999999999754
No 57
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=64.84 E-value=6.2 Score=24.95 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 024069 72 ATLFSIIVTTTFYLLCGCMGYAAFGDLAP 100 (273)
Q Consensus 72 ~~~~s~~i~~~~y~~vg~~GY~~fG~~v~ 100 (273)
+...++.+.+++-.++|...|.+||...+
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 45667778888888889999999996543
No 58
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=62.51 E-value=1.3e+02 Score=28.71 Aligned_cols=54 Identities=17% Similarity=-0.007 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcC
Q 024069 174 LFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKI 227 (273)
Q Consensus 174 ~~r~~~r~~~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~~ 227 (273)
.+|...|+...+.+.++.+.+-+.+.++-+.+.+.+..+-+..+++..+-.+|+
T Consensus 325 ~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 325 RRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 566777876666656555555599999999999998888888888877766553
No 59
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=58.40 E-value=85 Score=29.75 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHhhccc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 024069 176 RLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKK 226 (273)
Q Consensus 176 r~~~r~~~v~~~~~iAi~iP~-f~~ll~lvGa~~~~~l~fi~P~l~~l~l~~ 226 (273)
|..........+.+.+...|. +-..++-+|++..+..+-++|.++.++-++
T Consensus 324 r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 324 RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556667777777774 778888889888889999999998887643
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=54.19 E-value=79 Score=29.42 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHH
Q 024069 183 FVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIE 219 (273)
Q Consensus 183 ~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l 219 (273)
+.+++.+++...|+.+ ++.++.-......+-.+|++
T Consensus 350 ~~~i~~~la~~~~~~~-i~~~~~~~~~~~~~~~~~~~ 385 (406)
T PF00474_consen 350 IGIIAILLALFFPDSG-IIDLILFAFGILAAPFFPPL 385 (406)
T ss_dssp HHHHHHHHGGGGGGSS-HHHHHHHHHTTTHHHHHHHH
T ss_pred eHHhHHHHHhccccch-HHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777753 44444433333333344553
No 61
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=53.53 E-value=18 Score=32.63 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCC
Q 024069 29 TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 98 (273)
Q Consensus 29 ~~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~ 98 (273)
+.+..+.+.+.-...+.|++-..+.-+...+++| ++..|....+..+...+|...-+..-..||.+
T Consensus 171 ~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 171 ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 3445566666667778888887888888888886 67888899999888888888777777777754
No 62
>PRK11375 allantoin permease; Provisional
Probab=50.20 E-value=2.5e+02 Score=27.22 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=27.9
Q ss_pred cchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhh----hcccCCCCCc
Q 024069 48 FSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG----YAAFGDLAPN 101 (273)
Q Consensus 48 ~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~G----Y~~fG~~v~~ 101 (273)
+..+.|..-+-.|+| ++-.+....++.+...+...+|++. -..+|+...+
T Consensus 243 ~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~d 296 (484)
T PRK11375 243 PAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWN 296 (484)
T ss_pred HHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 344788888888875 3444444445555555544444333 4466766544
No 63
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=47.51 E-value=2.5e+02 Score=26.41 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=25.1
Q ss_pred cchhhHHHHh-hhcCCcccccchhhhhHHHH---HHHHHHHhhhhhhhh
Q 024069 48 FSIILLEIQD-TIRSPPAEYKTMKKATLFSI---IVTTTFYLLCGCMGY 92 (273)
Q Consensus 48 ~~~~~~~I~~-~M~~P~~~~~~f~~~~~~s~---~i~~~~y~~vg~~GY 92 (273)
|-...-.+.+ ++|||+ ++.++....+. .....+|...+.+|-
T Consensus 196 g~iiv~~i~~~g~~~~~---~~~~~~i~~G~ia~i~l~~vY~~L~~lGa 241 (378)
T TIGR00796 196 GIIVVNAIRSRGVTKPK---KITKYTIKAGLIAAVLLAFIYLSLFYLGA 241 (378)
T ss_pred HHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777 999962 55666665555 344445555555544
No 64
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=38.51 E-value=79 Score=26.00 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=35.6
Q ss_pred HHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 024069 41 AIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP 100 (273)
Q Consensus 41 ~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~ 100 (273)
..+=++-+....++-++++|+|+ +..--..=-.+=+++|.+.|+.+|..+-+...
T Consensus 19 ~a~gs~~~~~~~~~wy~~L~kP~-----w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~ 73 (161)
T COG3476 19 VALGSFFISSRDPNWYNNLKKPF-----WLPPEWAFPPVWTVLYALIGISAYLVWEKGPG 73 (161)
T ss_pred HHHHHHHhccccHHHHHhccCCC-----CCChHHHhhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 33334455677788999999972 32222222245578899999999988866543
No 65
>PRK12768 CysZ-like protein; Reviewed
Probab=38.10 E-value=2.3e+02 Score=24.85 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=20.5
Q ss_pred HhhhcCCcccccchhhhhHHHHHHHHHHHhhhh
Q 024069 56 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCG 88 (273)
Q Consensus 56 ~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg 88 (273)
.+++.+| ++++++..+.+....++...+
T Consensus 9 ~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 9 LARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4677786 688888888877777776653
No 66
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=37.91 E-value=3.6e+02 Score=25.55 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=34.8
Q ss_pred cchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcc----cCCCCCcc
Q 024069 48 FSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA----FGDLAPNN 102 (273)
Q Consensus 48 ~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~----fG~~v~~~ 102 (273)
...+.+..-+.+|+| ++-.+....++.........+|+++=.. +|+..-++
T Consensus 223 ~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p 277 (442)
T TIGR00800 223 WATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSP 277 (442)
T ss_pred HHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCH
Confidence 345788999999985 3444556667777777777777776655 88765443
No 67
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=37.84 E-value=63 Score=25.31 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024069 237 LQILNVSCFFITLVAAIGSVAGVVLDLKT 265 (273)
Q Consensus 237 ~~~l~~~g~~~~v~gt~~si~~ii~~~~~ 265 (273)
.+..+++|++++++|++.-+.=+++..++
T Consensus 65 ~i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35668899999999988877777776665
No 68
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=37.58 E-value=35 Score=27.99 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcc-chhhHHHHhhhcCCc--ccccchhhhhHHHHHHHHHHHh-hhhhhhhc
Q 024069 37 QALGAIAFAYSF-SIILLEIQDTIRSPP--AEYKTMKKATLFSIIVTTTFYL-LCGCMGYA 93 (273)
Q Consensus 37 ~aig~i~Faf~~-~~~~~~I~~~M~~P~--~~~~~f~~~~~~s~~i~~~~y~-~vg~~GY~ 93 (273)
..+-.-.++|+| +..+|.+++|+-+.+ =+.++|...+..++..-...-. ....+||.
T Consensus 8 ~f~~ig~~~FGGg~a~i~~~~~~~V~~~~wlt~~~f~~~~al~q~~PGP~~~n~a~~iG~~ 68 (169)
T PF02417_consen 8 SFFKIGLFSFGGGYAIIPLIQREFVERRGWLTEEEFLEGLALAQALPGPIAINLATFIGYR 68 (169)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhHccCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 445566778888 788999999997721 1225666666666655444444 44455553
No 69
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=37.19 E-value=3.4e+02 Score=25.02 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=17.0
Q ss_pred hccchHHHHHHhhhhhhhhHHHH
Q 024069 193 LLPFFNDVVGILGAMGFWPLTVY 215 (273)
Q Consensus 193 ~iP~f~~ll~lvGa~~~~~l~fi 215 (273)
-+|.++.++++++++-.+.+.|-
T Consensus 106 ~ip~~~~ii~vi~t~il~y~G~~ 128 (356)
T COG4956 106 PIPFISTIIPVILTIILAYFGFQ 128 (356)
T ss_pred CccHHHhHHHHHHHHHHHHHhhH
Confidence 46888888888888766655554
No 70
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=36.22 E-value=1.9e+02 Score=26.23 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024069 237 LQILNVSCFFITLVAAIGSVAGVVLDL 263 (273)
Q Consensus 237 ~~~l~~~g~~~~v~gt~~si~~ii~~~ 263 (273)
...+.+.|++++.+|.+.+++...+..
T Consensus 280 ~~~l~~~~~~ig~l~s~~s~~r~L~~~ 306 (309)
T PRK11026 280 CLLLLLVCSMIGWVAAWLATVQHLRRF 306 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335567777788888887777766655
No 71
>PRK12488 acetate permease; Provisional
Probab=35.95 E-value=4.3e+02 Score=25.94 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=22.5
Q ss_pred HHhhhcCCcccccchhhhhHHHHHHHHHHH---hhhhhhhhcccCC
Q 024069 55 IQDTIRSPPAEYKTMKKATLFSIIVTTTFY---LLCGCMGYAAFGD 97 (273)
Q Consensus 55 I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y---~~vg~~GY~~fG~ 97 (273)
+|+-+.-+ +.|+-+|...++..+...+| ..+|+.++..+++
T Consensus 281 ~qR~~aak--s~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~l~~~ 324 (549)
T PRK12488 281 LMRFFTVS--DAREARKSVLYATGFIGYFYLLIIVVGFGAIVMVGT 324 (549)
T ss_pred HHHhhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444442 23677787776654443333 4556666666654
No 72
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.84 E-value=1.4e+02 Score=21.06 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhhccccc
Q 024069 237 LQILNVSCFFITL-VAAIGSVAGVVLDLKTYKP 268 (273)
Q Consensus 237 ~~~l~~~g~~~~v-~gt~~si~~ii~~~~~~~~ 268 (273)
.++++++++++++ .|.+.|-+.+-+.++++-+
T Consensus 6 ail~ivl~ll~G~~~G~fiark~~~k~lk~NPp 38 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIARKQMKKQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 3455667777666 4677888888888887554
No 73
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=31.26 E-value=1.8e+02 Score=24.72 Aligned_cols=58 Identities=14% Similarity=-0.030 Sum_probs=40.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhcCCC----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024069 204 LGAMGFWPLTVYFPIEMYKAQKKIGR----------GTTRWLGLQILNVSCFFITLVAAIGSVAGVVL 261 (273)
Q Consensus 204 vGa~~~~~l~fi~P~l~~l~l~~~~~----------~~~~~~~~~~l~~~g~~~~v~gt~~si~~ii~ 261 (273)
.|.+.+.-+-.++|+...+..++++- +..+-....+..++|++.++++...|..++.+
T Consensus 50 f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 50 FGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred cCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35666678888889988888865421 11123456666788888888888888888765
No 74
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=30.29 E-value=2.3e+02 Score=22.72 Aligned_cols=11 Identities=9% Similarity=0.148 Sum_probs=6.0
Q ss_pred HHHHHHHHHHh
Q 024069 215 YFPIEMYKAQK 225 (273)
Q Consensus 215 i~P~l~~l~l~ 225 (273)
++|+++.++.+
T Consensus 77 vlP~~~l~~~~ 87 (156)
T PF08019_consen 77 VLPALLLWRVR 87 (156)
T ss_pred HHHHHHHHHHH
Confidence 35776655443
No 75
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.56 E-value=2.9e+02 Score=21.95 Aligned_cols=28 Identities=32% Similarity=0.770 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q 024069 183 FVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKAQK 225 (273)
Q Consensus 183 ~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l~~l~l~ 225 (273)
+.-++.+++..+| |+.++| |-+.|+..|
T Consensus 22 l~hls~llglllp-fg~llG--------------PlivW~~kK 49 (143)
T COG3296 22 LAHLSALLGLLLP-FGSLLG--------------PLIVWLLKK 49 (143)
T ss_pred HHHHHHHHHHHHH-HHHHHH--------------HHHHHHHHh
Confidence 3456778888889 887776 888887655
No 76
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=29.41 E-value=3.3e+02 Score=24.71 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024069 237 LQILNVSCFFITLVAAIGSVAGVVLDLK 264 (273)
Q Consensus 237 ~~~l~~~g~~~~v~gt~~si~~ii~~~~ 264 (273)
...++..|++++.+|.+.+++.-.+.++
T Consensus 280 ~~~l~~~g~~lg~lgs~~s~~r~Lr~~~ 307 (309)
T TIGR00439 280 LGLLLGFCIALGVVGAWLATTQHLLCFK 307 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455677788888888888877766653
No 77
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=28.70 E-value=4.1e+02 Score=24.66 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=22.5
Q ss_pred HHhhhcCCcccccchhhhhHHHHHHHHHHHhh---hhhhhhcccC
Q 024069 55 IQDTIRSPPAEYKTMKKATLFSIIVTTTFYLL---CGCMGYAAFG 96 (273)
Q Consensus 55 I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~---vg~~GY~~fG 96 (273)
.|+-+.- ++.|+.+|...++.......+.. +|+.++..|.
T Consensus 223 ~qR~~a~--ks~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~ 265 (407)
T TIGR00813 223 VQRCLAA--KSAKHAKKGCLISGVLKLLPMFGAVLPGLIARALYT 265 (407)
T ss_pred hhHHHhc--CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455544 23367888877776555555544 4555555553
No 78
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=27.11 E-value=1.8e+02 Score=21.36 Aligned_cols=59 Identities=8% Similarity=0.167 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhh-HHHHHHHHHHHhhhhhhhhcccCC
Q 024069 34 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKAT-LFSIIVTTTFYLLCGCMGYAAFGD 97 (273)
Q Consensus 34 ~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~-~~s~~i~~~~y~~vg~~GY~~fG~ 97 (273)
+.....|++..+-.|...+.|.-.+=.+| . ..-+|++ .+++ +...-+++|+++|-+||.
T Consensus 12 s~vli~GIiLL~~ACIFAfidFSK~~s~~--~-~~~wRalSii~F--IlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 12 SGVLICGVLLLTAACVFAFVDFSKNTSNV--T-DYVWRALSVTCF--IVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhhccCCCC--c-chhHHHHHHHHH--HHHHHHHHHHHHHHHhcc
Confidence 33444666666666666667765544343 2 2344554 3333 333345678999999984
No 79
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=25.65 E-value=1.1e+02 Score=28.45 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhccc--hhhHHHHh----------hhcCCcccccchhhhh---HHHHHHHHHHHhhhhhhhhcccCCC
Q 024069 34 RSLQALGAIAFAYSFS--IILLEIQD----------TIRSPPAEYKTMKKAT---LFSIIVTTTFYLLCGCMGYAAFGDL 98 (273)
Q Consensus 34 ~~f~aig~i~Faf~~~--~~~~~I~~----------~M~~P~~~~~~f~~~~---~~s~~i~~~~y~~vg~~GY~~fG~~ 98 (273)
+.+..+.+..|+|-.- ...|++.+ .|+++ ++..|..|.+ ......+...=...-++|.+.||+-
T Consensus 146 ~LlgpIaVaAYsYMaLvPiiqPpimklLttkkeR~I~M~~~-r~Vsk~ekiiFpivv~~~~~ll~P~a~pLig~Lm~Gnl 224 (360)
T PF03977_consen 146 HLLGPIAVAAYSYMALVPIIQPPIMKLLTTKKERKIRMKQL-RPVSKTEKIIFPIVVTILVGLLLPSAAPLIGMLMFGNL 224 (360)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCHHHHhccCCCC-CCCChHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 6789999999999642 23455544 34543 2223333332 2222222222234478999999997
Q ss_pred CC-ccccccc
Q 024069 99 AP-NNLLTGF 107 (273)
Q Consensus 99 v~-~~il~~l 107 (273)
.+ +.+.+++
T Consensus 225 ~rEsgv~~rL 234 (360)
T PF03977_consen 225 LRESGVVERL 234 (360)
T ss_pred HHHhccHHHH
Confidence 74 4666666
No 80
>PRK11281 hypothetical protein; Provisional
Probab=24.43 E-value=8.6e+02 Score=26.54 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=23.6
Q ss_pred cchhhhhHHHHHHHHHHHhhhhhhhhcccCC
Q 024069 67 KTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 97 (273)
Q Consensus 67 ~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~ 97 (273)
..-++++.++...+....+.+..+||+.+..
T Consensus 540 ~~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 540 LHTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445677788888888888888899988764
No 81
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=23.96 E-value=3.9e+02 Score=21.73 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=42.4
Q ss_pred cchhhhhHHHHHHHHHHHhhhhhhhhcccCCCCCcccccccCCCCChHHHHHHHHHHHHHHHhhhhccchhh
Q 024069 67 KTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPL 138 (273)
Q Consensus 67 ~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~v~~~il~~l~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~ 138 (273)
|+.+|.++...=....+..++|+..=..+-++. ++ .|+. .-..|.-.+..+++.++-+..+..+..|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~-~~fy-SlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NI-PNMY-SLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-Cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 677888888888888888888875433333332 22 2331 01357666667777777777766666654
No 82
>COG4478 Predicted membrane protein [Function unknown]
Probab=21.27 E-value=3e+02 Score=23.37 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024069 237 LQILNVSCFFITLVAAIGSVAGVVLDLK 264 (273)
Q Consensus 237 ~~~l~~~g~~~~v~gt~~si~~ii~~~~ 264 (273)
..++++.++..|+.+....-+...+.+-
T Consensus 126 li~l~v~pliIGv~~~ligF~~fF~~FH 153 (210)
T COG4478 126 LILLLVLPLIIGVAASLIGFDIFFTLFH 153 (210)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 4455677777777654444444444443
No 83
>PF11188 DUF2975: Protein of unknown function (DUF2975); InterPro: IPR021354 This family of proteins have no known function. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=20.49 E-value=2.2e+02 Score=21.61 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=7.7
Q ss_pred HHHHHhhcccccCcc
Q 024069 257 AGVVLDLKTYKPFKT 271 (273)
Q Consensus 257 ~~ii~~~~~~~~f~~ 271 (273)
+.+.+++++-++|++
T Consensus 44 ~~ll~~i~~~~~Fs~ 58 (136)
T PF11188_consen 44 RRLLRNIQKGKPFSP 58 (136)
T ss_pred HHHHHHHHCCCcchH
Confidence 445555555555554
No 84
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=20.08 E-value=7.1e+02 Score=23.13 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=32.5
Q ss_pred hhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCC
Q 024069 50 IILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 98 (273)
Q Consensus 50 ~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~ 98 (273)
...++..+-.|+| ++.......+..+...+...+|.+.-.+.|+.
T Consensus 190 ~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 190 PLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred HHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4467777777774 56666667777888888888888777776654
Done!