Query 024069
Match_columns 273
No_of_seqs 108 out of 1127
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 17:41:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 98.4 6.1E-06 2.1E-10 76.4 14.4 64 32-98 190-253 (445)
2 4djk_A Probable glutamate/gamm 97.9 0.0007 2.4E-08 63.6 18.3 60 36-98 204-263 (511)
3 3gia_A Uncharacterized protein 97.7 0.00046 1.6E-08 63.7 13.7 65 29-96 184-248 (444)
4 3dh4_A Sodium/glucose cotransp 54.7 1.4E+02 0.0046 27.8 15.1 39 55-95 242-283 (530)
5 1afo_A Glycophorin A; integral 51.0 33 0.0011 20.3 4.4 28 238-265 12-39 (40)
6 2xq2_A Sodium/glucose cotransp 43.9 2.1E+02 0.0072 26.9 11.6 37 183-219 406-442 (593)
7 2jln_A MHP1; hydantoin, transp 38.9 1.4E+02 0.0047 27.6 9.2 14 49-62 224-237 (501)
8 3mp7_B Preprotein translocase 14.8 1.1E+02 0.0037 19.9 2.4 30 58-93 21-50 (61)
9 2ww9_B Protein transport prote 10.5 1.5E+02 0.005 20.4 2.1 30 58-93 38-67 (80)
10 2wwb_B SEC61gamma, protein tra 8.2 1.2E+02 0.0041 20.2 0.9 30 58-93 24-53 (68)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.37 E-value=6.1e-06 Score=76.39 Aligned_cols=64 Identities=9% Similarity=0.125 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCC
Q 024069 32 LWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 98 (273)
Q Consensus 32 ~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~ 98 (273)
..+.+.++...+|+|.|........+|+|||+ |+.+|++..+..++.++|...........+.+
T Consensus 190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 45677889999999999999999999999972 78999999999999999999887766666543
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=97.90 E-value=0.0007 Score=63.62 Aligned_cols=60 Identities=12% Similarity=0.054 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccCCC
Q 024069 36 LQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 98 (273)
Q Consensus 36 f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG~~ 98 (273)
+.++...+|+|.|........+|+|||+ |+.+|++..+..++.++|+...+......+++
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 3456778999999999999999999983 78999999999999999999887766666654
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.72 E-value=0.00046 Score=63.66 Aligned_cols=65 Identities=14% Similarity=0.190 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHHHHHHhccchhhHHHHhhhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhcccC
Q 024069 29 TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 96 (273)
Q Consensus 29 ~~~~~~~f~aig~i~Faf~~~~~~~~I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~~fG 96 (273)
+.++.+.+.++....|+|.|........+|+|||+ |+.+|++..+..++.++|....+......+
T Consensus 184 ~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 184 PSAVSGMIFASAIFFLSYMGFGVITNASEHIENPK---KNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44555777888889999999999999999999972 789999999999999999988765554444
No 4
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=54.71 E-value=1.4e+02 Score=27.82 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=21.0
Q ss_pred HHhhhcCCcccccchhhhhHHHHHHHHHHH---hhhhhhhhccc
Q 024069 55 IQDTIRSPPAEYKTMKKATLFSIIVTTTFY---LLCGCMGYAAF 95 (273)
Q Consensus 55 I~~~M~~P~~~~~~f~~~~~~s~~i~~~~y---~~vg~~GY~~f 95 (273)
+|+-|.-+ +.|+.+|...++........ ...|+.++..+
T Consensus 242 ~qR~laak--s~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~ 283 (530)
T 3dh4_A 242 IQRTLAAK--SVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVIT 283 (530)
T ss_dssp HHHHHSSS--CHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555542 22667777666655444433 34466666656
No 5
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=50.98 E-value=33 Score=20.30 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024069 238 QILNVSCFFITLVAAIGSVAGVVLDLKT 265 (273)
Q Consensus 238 ~~l~~~g~~~~v~gt~~si~~ii~~~~~ 265 (273)
..++++|+..+++|++-.+.-.++..++
T Consensus 12 i~lII~~vmaGiIG~IllI~y~I~rl~K 39 (40)
T 1afo_A 12 ITLIIFGVMAGVIGTILLISYGIRRLIK 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567899999999998887777766543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=43.86 E-value=2.1e+02 Score=26.91 Aligned_cols=37 Identities=8% Similarity=0.023 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhccchHHHHHHhhhhhhhhHHHHHHHH
Q 024069 183 FVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIE 219 (273)
Q Consensus 183 ~v~~~~~iAi~iP~f~~ll~lvGa~~~~~l~fi~P~l 219 (273)
+.+++.++|..+...+.+++++....+....-++|++
T Consensus 406 ~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 442 (593)
T 2xq2_A 406 ALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILAVF 442 (593)
T ss_dssp HHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHHHH
Confidence 3445555665555566666665444433333334543
No 7
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=38.87 E-value=1.4e+02 Score=27.58 Aligned_cols=14 Identities=7% Similarity=0.162 Sum_probs=10.9
Q ss_pred chhhHHHHhhhcCC
Q 024069 49 SIILLEIQDTIRSP 62 (273)
Q Consensus 49 ~~~~~~I~~~M~~P 62 (273)
..+.+...+.+|+|
T Consensus 224 ~~~~~DysRy~~~~ 237 (501)
T 2jln_A 224 VVSIHDIVKECKVD 237 (501)
T ss_dssp HTTTHHHHTTBCCC
T ss_pred HhccCcccccCCCC
Confidence 35678888999886
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=14.82 E-value=1.1e+02 Score=19.90 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=16.0
Q ss_pred hhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhc
Q 024069 58 TIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYA 93 (273)
Q Consensus 58 ~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~ 93 (273)
.-++| +++.|.+....+. +-++++|.+||.
T Consensus 21 ~~~KP--d~~Ef~~iak~~~----iG~~i~G~iGf~ 50 (61)
T 3mp7_B 21 VTKKP--NWATYKRAAKITG----LGIILIGLIGML 50 (61)
T ss_dssp HSCCC--CTTHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 33564 5577777665332 223455666663
No 9
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=10.52 E-value=1.5e+02 Score=20.44 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=16.9
Q ss_pred hhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhc
Q 024069 58 TIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYA 93 (273)
Q Consensus 58 ~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~ 93 (273)
--++| +++.|.+....+ .+-++++|++||.
T Consensus 38 ~~~KP--dr~Ef~~iak~t----~iG~~imG~IGfi 67 (80)
T 2ww9_B 38 KCKKP--DLKEYTKIVKAV----GIGFIAVGIIGYA 67 (80)
T ss_dssp SCCCC--CHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 34564 456777765433 2334566777774
No 10
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=8.20 E-value=1.2e+02 Score=20.20 Aligned_cols=30 Identities=17% Similarity=0.392 Sum_probs=16.2
Q ss_pred hhcCCcccccchhhhhHHHHHHHHHHHhhhhhhhhc
Q 024069 58 TIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYA 93 (273)
Q Consensus 58 ~M~~P~~~~~~f~~~~~~s~~i~~~~y~~vg~~GY~ 93 (273)
--++| +++.|.+....+. +-++++|.+||.
T Consensus 24 ~~~KP--dr~Ef~~iak~~~----iG~~i~G~IGf~ 53 (68)
T 2wwb_B 24 RCTKP--DRKEFQKIAMATA----IGFAIMGFIGFF 53 (68)
T ss_dssp HCCCC--CTHHHHHHHHHSS----HHHHHHHHHHHH
T ss_pred HhcCC--CHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34564 5567777764332 223455666664
Done!