BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024070
MSACSSTFRLPNLPNISPQNHNIVMPTTVFLSLRHSTATNPALCKLQCVGNNFDSTPKTI
EIPGKITEESADCEPRIHSSGGDGGAGDSPGGGGGGGGDSGGGGGDGEGNDGEEKEFGPI
LKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRD
RMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWV
TSQQVGKAHKHFRFFIFCIQIKLCFLSFCIDFI

High Scoring Gene Products

Symbol, full name Information P value
RER1
AT5G22790 		protein from Arabidopsis thaliana 1.0e-43
LCD1
AT2G37860 		protein from Arabidopsis thaliana 2.1e-36

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024070
        (273 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2158155 - symbol:RER1 "AT5G22790" species:3702...   461  1.0e-43   1
TAIR|locus:2065649 - symbol:LCD1 "AT2G37860" species:3702...   392  2.1e-36   1


>TAIR|locus:2158155 [details] [associations]
            symbol:RER1 "AT5G22790" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009706 "chloroplast inner
            membrane" evidence=IDA] [GO:0009941 "chloroplast envelope"
            evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009536
            "plastid" evidence=IDA] GO:GO:0005739 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0009706 EMBL:AB025618
            eggNOG:NOG239107 InterPro:IPR021825 Pfam:PF11891 EMBL:AF367348
            EMBL:AY081723 IPI:IPI00548224 RefSeq:NP_197671.1 UniGene:At.28733
            PaxDb:Q9FGP9 PRIDE:Q9FGP9 EnsemblPlants:AT5G22790.1 GeneID:832342
            KEGG:ath:AT5G22790 TAIR:At5g22790 HOGENOM:HOG000152462
            InParanoid:Q9FGP9 OMA:PYARIGK PhylomeDB:Q9FGP9
            ProtClustDB:CLSN2916941 Genevestigator:Q9FGP9 Uniprot:Q9FGP9
        Length = 433

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 88/112 (78%), Positives = 99/112 (88%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G+ LP+DM+EAAK+VGIRK+FLLRYLDLQGSVWPLGFLM
Sbjct:   141 EEKEFGPILKFEEVMKETERRGITLPEDMLEAAKSVGIRKLFLLRYLDLQGSVWPLGFLM 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAA 224
             R C MLR+RMLADPSFLFKVGTE+ IDSCCAT AE QKRG+DF +    +AA
Sbjct:   201 RSCAMLRNRMLADPSFLFKVGTEVAIDSCCATFAEVQKRGEDFWSEFELYAA 252


>TAIR|locus:2065649 [details] [associations]
            symbol:LCD1 "AT2G37860" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0048366
            "leaf development" evidence=IMP] [GO:0016020 "membrane"
            evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009536 "plastid"
            evidence=IDA] EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
            GO:GO:0009941 GO:GO:0048366 EMBL:AK316808 IPI:IPI00518318
            RefSeq:NP_001031506.1 UniGene:At.14627 PaxDb:B9DFK5 PRIDE:B9DFK5
            EnsemblPlants:AT2G37860.3 GeneID:818362 KEGG:ath:AT2G37860
            TAIR:At2g37860 eggNOG:NOG239107 HOGENOM:HOG000242221 OMA:IKSAALW
            PhylomeDB:B9DFK5 ProtClustDB:CLSN2680100 Genevestigator:B9DFK5
            InterPro:IPR021825 Pfam:PF11891 Uniprot:B9DFK5
        Length = 432

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 78/103 (75%), Positives = 85/103 (82%)

Query:   113 EEKEFGPILKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLM 172
             EEKEFGPILKFEEVMKE E +G  LP DM+EAAK  GIRK+ LLRYLDLQ S   LGF +
Sbjct:   141 EEKEFGPILKFEEVMKETEARGATLPSDMLEAAKNYGIRKVLLLRYLDLQSSAGLLGFAI 200

Query:   173 RYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDF 215
             R   MLR+RMLADPSFLFK+G EIVIDSCCAT+AE QKRGKDF
Sbjct:   201 RSWAMLRNRMLADPSFLFKIGAEIVIDSCCATVAEVQKRGKDF 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.141   0.460    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      273       239   0.00092  113 3  11 22  0.45    32
                                                     32  0.44    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  210 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.75u 0.09s 18.84t   Elapsed:  00:00:00
  Total cpu time:  18.75u 0.09s 18.84t   Elapsed:  00:00:00
  Start:  Sat May 11 09:25:32 2013   End:  Sat May 11 09:25:32 2013

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