BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024070
         (273 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C5BWS3|IF2_BEUC1 Translation initiation factor IF-2 OS=Beutenbergia cavernae (strain
           ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=infB PE=3 SV=1
          Length = 956

 Score = 32.7 bits (73), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 14/27 (51%)

Query: 81  GGDGGAGDSPGGGGGGGGDSGGGGGDG 107
           GG G AG  PGG G  G   GG G  G
Sbjct: 208 GGSGAAGPRPGGTGAAGPRPGGSGQGG 234


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.142    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,009,177
Number of Sequences: 539616
Number of extensions: 5869841
Number of successful extensions: 119584
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1340
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 51090
Number of HSP's gapped (non-prelim): 34938
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)