Query 024070
Match_columns 273
No_of_seqs 111 out of 134
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 08:44:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11891 DUF3411: Domain of un 100.0 1.2E-31 2.7E-36 234.6 -0.4 81 180-261 1-89 (180)
2 PLN03138 Protein TOC75; Provis 95.3 0.039 8.5E-07 58.6 6.9 21 2-22 5-25 (796)
3 TIGR02877 spore_yhbH sporulati 88.7 0.9 2E-05 44.9 5.8 28 104-135 101-128 (371)
4 PRK05325 hypothetical protein; 88.4 0.95 2.1E-05 45.0 5.8 16 120-135 101-116 (401)
5 PF04285 DUF444: Protein of un 86.9 1.3 2.8E-05 44.3 5.7 28 104-135 105-132 (421)
6 PHA00370 III attachment protei 85.6 1.1 2.3E-05 42.9 4.2 21 200-220 243-263 (297)
7 PHA00370 III attachment protei 85.3 1.4 2.9E-05 42.2 4.7 6 161-166 221-226 (297)
8 PF02084 Bindin: Bindin; Inte 83.2 4.3 9.3E-05 38.1 6.9 25 124-148 107-131 (238)
9 KOG3915 Transcription regulato 78.8 1.8 3.8E-05 44.6 3.1 49 218-272 203-261 (641)
10 KOG3973 Uncharacterized conser 77.7 4.9 0.00011 40.3 5.6 8 56-63 306-313 (465)
11 PTZ00146 fibrillarin; Provisio 76.8 2.8 6.1E-05 40.0 3.7 37 127-165 107-143 (293)
12 PTZ00146 fibrillarin; Provisio 73.3 3.9 8.4E-05 39.1 3.6 8 219-226 203-210 (293)
13 PF02957 TT_ORF2: TT viral ORF 72.3 4.6 9.9E-05 33.1 3.4 8 123-130 111-118 (122)
14 PF06524 NOA36: NOA36 protein; 65.7 7.7 0.00017 37.5 3.8 12 59-70 219-230 (314)
15 PRK05325 hypothetical protein; 57.8 14 0.0003 37.0 4.3 9 215-223 202-210 (401)
16 PF02979 NHase_alpha: Nitrile 57.4 9 0.0002 34.9 2.6 51 145-195 17-74 (188)
17 COG2718 Uncharacterized conser 56.0 18 0.0004 36.5 4.7 31 105-135 102-132 (423)
18 KOG3074 Transcriptional regula 53.7 4.3 9.3E-05 38.5 -0.0 10 117-126 46-55 (263)
19 PF07631 PSD4: Protein of unkn 53.4 23 0.00049 29.8 4.2 35 134-188 15-51 (128)
20 TIGR02877 spore_yhbH sporulati 51.0 18 0.00039 36.0 3.8 15 220-234 197-211 (371)
21 KOG1456 Heterogeneous nuclear 48.6 14 0.0003 37.5 2.6 9 139-147 46-54 (494)
22 PF08671 SinI: Anti-repressor 46.3 15 0.00033 24.3 1.7 21 141-162 9-29 (30)
23 PLN03134 glycine-rich RNA-bind 44.5 33 0.00071 28.9 3.9 28 13-40 21-48 (144)
24 COG3028 Uncharacterized protei 43.5 85 0.0018 28.8 6.5 18 136-153 58-76 (187)
25 TIGR01659 sex-lethal sex-letha 41.5 40 0.00087 32.6 4.5 6 30-35 239-244 (346)
26 KOG0105 Alternative splicing f 36.3 49 0.0011 31.0 3.9 11 26-36 45-55 (241)
27 TIGR03793 TOMM_pelo TOMM prope 34.2 35 0.00076 26.7 2.3 29 171-199 10-41 (77)
28 PF04360 Serglycin: Serglycin 33.8 18 0.0004 31.9 0.8 40 18-57 4-44 (150)
29 COG2718 Uncharacterized conser 33.7 34 0.00074 34.7 2.7 17 97-113 98-114 (423)
30 KOG0105 Alternative splicing f 30.9 49 0.0011 31.0 3.0 10 73-82 75-84 (241)
31 PRK05255 hypothetical protein; 29.1 1.8E+02 0.0038 26.1 6.1 19 175-193 109-128 (171)
32 TIGR01323 nitrile_alph nitrile 27.8 77 0.0017 29.0 3.7 43 145-187 11-59 (185)
33 KOG1596 Fibrillarin and relate 27.4 73 0.0016 31.1 3.6 10 219-228 227-236 (317)
34 PF05084 GRA6: Granule antigen 26.7 81 0.0018 28.9 3.6 19 24-42 100-118 (215)
35 PRK12512 RNA polymerase sigma 26.6 1.6E+02 0.0034 24.5 5.2 61 126-187 121-184 (184)
36 KOG3074 Transcriptional regula 25.8 50 0.0011 31.6 2.2 20 137-156 90-109 (263)
37 TIGR00718 sda_alpha L-serine d 25.6 2.2E+02 0.0048 27.6 6.6 120 122-256 4-127 (294)
38 PF06682 DUF1183: Protein of u 23.7 85 0.0018 30.7 3.4 17 23-39 22-38 (318)
39 PRK08558 adenine phosphoribosy 23.5 2.3E+02 0.005 26.0 6.0 41 121-166 11-51 (238)
40 KOG0116 RasGAP SH3 binding pro 22.6 1.1E+02 0.0023 31.0 4.0 17 27-43 331-347 (419)
41 COG4174 ABC-type uncharacteriz 22.3 1.5E+02 0.0033 29.3 4.7 15 184-198 178-192 (364)
42 PRK12799 motB flagellar motor 22.2 33 0.00071 34.6 0.3 38 218-256 26-64 (421)
43 KOG1596 Fibrillarin and relate 20.5 1.2E+02 0.0026 29.6 3.7 11 184-194 212-222 (317)
44 PF12244 DUF3606: Protein of u 20.4 1.9E+02 0.004 21.2 3.9 34 127-160 23-56 (57)
45 KOG1456 Heterogeneous nuclear 20.3 82 0.0018 32.2 2.6 8 202-209 189-196 (494)
46 PF07583 PSCyt2: Protein of un 20.3 3E+02 0.0066 25.0 6.1 21 176-196 58-78 (208)
47 TIGR00625 tfb2 Transcription f 20.3 85 0.0018 32.1 2.8 67 124-192 312-399 (448)
48 PF07526 POX: Associated with 20.2 5.4E+02 0.012 22.1 7.2 16 168-183 124-139 (140)
49 PF06524 NOA36: NOA36 protein; 20.1 1.4E+02 0.0031 29.1 4.1 8 42-49 233-240 (314)
No 1
>PF11891 DUF3411: Domain of unknown function (DUF3411); InterPro: IPR021825 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 168 to 186 amino acids in length. This domain has a conserved RYQ sequence motif.
Probab=99.96 E-value=1.2e-31 Score=234.64 Aligned_cols=81 Identities=32% Similarity=0.457 Sum_probs=76.5
Q ss_pred hhHhcCcchhHHHhhhhhhcccceeeeeeecccccccchhhhhhhhhhHhhhhhhheeeeecccccc----cc----chh
Q 024070 180 DRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWTYTKCMWVTSQQVG----KA----HKH 251 (273)
Q Consensus 180 ~RmLADP~FlfKlg~E~vI~v~~~v~aE~~~Rge~F~~ElD~V~advv~~~i~df~l~VwllAPt~~----~a----~~~ 251 (273)
+||||||+|||||++|++||++|+++|||++|||+||+|||||++|+++++|+||+| |||||||+. .+ +.+
T Consensus 1 ~RllADP~Fl~Kl~~E~~i~i~~~~~~e~~~R~e~f~~E~d~v~~d~v~~~i~n~~l-v~llAPt~s~~~~~~~~~~~~~ 79 (180)
T PF11891_consen 1 ERLLADPSFLFKLAIEEVIGIGCATAAEYAKRGERFWNELDFVFSDVVVGSIVNFAL-VWLLAPTRSFGSPAASSPGGGL 79 (180)
T ss_pred CcccccchHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHH-HHhccchHhhCcccccccchHH
Confidence 699999999999999999999999999999999999999999999999999999999 999999982 12 479
Q ss_pred hhhhhhCCCc
Q 024070 252 FRFFIFCIQI 261 (273)
Q Consensus 252 ~~~f~~cp~~ 261 (273)
+|+|+.||+|
T Consensus 80 ~~~~~~~P~n 89 (180)
T PF11891_consen 80 QKFLGSLPNN 89 (180)
T ss_pred HHHHHhChHH
Confidence 9999999976
No 2
>PLN03138 Protein TOC75; Provisional
Probab=95.34 E-value=0.039 Score=58.65 Aligned_cols=21 Identities=24% Similarity=0.176 Sum_probs=16.0
Q ss_pred CcccccccCCCCCCCCCCCCc
Q 024070 2 SACSSTFRLPNLPNISPQNHN 22 (273)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (273)
++|.+.++-++++.-.||+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (796)
T PLN03138 5 STMVSAAASTSLSSSRPQLSS 25 (796)
T ss_pred cccceeccCCCccCCCccccc
Confidence 577788888888887777654
No 3
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=88.72 E-value=0.9 Score=44.85 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=17.9
Q ss_pred CCCCCCCCCCcccccccccHHHHHHHHHHhCC
Q 024070 104 GGDGEGNDGEEKEFGPILKFEEVMKEIELKGV 135 (273)
Q Consensus 104 ~g~g~~~d~~d~efg~il~~eaVLqea~rr~~ 135 (273)
.|+|+|+|+-+-| ++.+|+++....-++
T Consensus 101 ag~geGed~fe~e----~s~eE~~~~lfEdLe 128 (371)
T TIGR02877 101 AGDQEGEDYYETE----VTLEELFELLFEDLE 128 (371)
T ss_pred CCCCCCcceEEEE----ecHHHHHHHHHhhcc
Confidence 4444555544434 888999888877654
No 4
>PRK05325 hypothetical protein; Provisional
Probab=88.41 E-value=0.95 Score=45.00 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=11.7
Q ss_pred cccHHHHHHHHHHhCC
Q 024070 120 ILKFEEVMKEIELKGV 135 (273)
Q Consensus 120 il~~eaVLqea~rr~~ 135 (273)
-++.+|+++....-++
T Consensus 101 els~eE~~~~lfEdLe 116 (401)
T PRK05325 101 EISLEELLDLLFEDLE 116 (401)
T ss_pred EecHHHHHHHHHhhcC
Confidence 3788888888776554
No 5
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=86.92 E-value=1.3 Score=44.31 Aligned_cols=28 Identities=36% Similarity=0.317 Sum_probs=16.1
Q ss_pred CCCCCCCCCCcccccccccHHHHHHHHHHhCC
Q 024070 104 GGDGEGNDGEEKEFGPILKFEEVMKEIELKGV 135 (273)
Q Consensus 104 ~g~g~~~d~~d~efg~il~~eaVLqea~rr~~ 135 (273)
.|+|.|+|+-+ --++.+|++.....-++
T Consensus 105 ag~geGeD~fe----~els~eE~~~llfEdLe 132 (421)
T PF04285_consen 105 AGDGEGEDDFE----FELSREEFLDLLFEDLE 132 (421)
T ss_pred CCCCCCCCeEE----EEEEHHHHHHHhHHHhc
Confidence 34444444433 34788888777765543
No 6
>PHA00370 III attachment protein
Probab=85.65 E-value=1.1 Score=42.90 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=13.8
Q ss_pred ccceeeeeeecccccccchhh
Q 024070 200 SCCATLAEFQKRGKDFCTLCS 220 (273)
Q Consensus 200 v~~~v~aE~~~Rge~F~~ElD 220 (273)
-.|.-+.+++---++|..+.|
T Consensus 243 n~C~~FV~~~geVYe~~I~Cd 263 (297)
T PHA00370 243 HGCTPFVFAQGKVYEFIIGCD 263 (297)
T ss_pred CCCCcceeeccchhhhhhcch
Confidence 466777777776667766644
No 7
>PHA00370 III attachment protein
Probab=85.27 E-value=1.4 Score=42.23 Aligned_cols=6 Identities=33% Similarity=0.158 Sum_probs=2.5
Q ss_pred ccCCcc
Q 024070 161 LQGSVW 166 (273)
Q Consensus 161 Lqa~p~ 166 (273)
=..+||
T Consensus 221 g~gS~~ 226 (297)
T PHA00370 221 GDGSPL 226 (297)
T ss_pred cCCcHH
Confidence 334444
No 8
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=83.16 E-value=4.3 Score=38.13 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHc
Q 024070 124 EEVMKEIELKGVGLPDDMMEAAKTV 148 (273)
Q Consensus 124 eaVLqea~rr~~sLPaDL~~Aae~G 148 (273)
+.|.+...+|..+||-|+-+-++.|
T Consensus 107 ~~ikavLgaTKiDLPVDINDPYDlG 131 (238)
T PF02084_consen 107 EDIKAVLGATKIDLPVDINDPYDLG 131 (238)
T ss_pred HHHHHHhcccccccccccCChhhHH
Confidence 4566667788889999987777666
No 9
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=78.80 E-value=1.8 Score=44.63 Aligned_cols=49 Identities=16% Similarity=0.011 Sum_probs=27.0
Q ss_pred hhhhhhhhhhHhhhhhhheeee-eccccc--------c-ccchhhhhhhhCCCcceeeeeecccc
Q 024070 218 LCSYWAAICLKRFIWTYTKCMW-VTSQQV--------G-KAHKHFRFFIFCIQIKLCFLSFCIDF 272 (273)
Q Consensus 218 ElD~V~advv~~~i~df~l~Vw-llAPt~--------~-~a~~~~~~f~~cp~~~~~~~~~~~~~ 272 (273)
-+|+.+-++|-++..=++.|=- -..|.+ . .-|+|+ |.-..|-|--|-||
T Consensus 203 afdlFLKhlVGGLHTVYTKLKRLdI~PvVCnVEQVRiLRgLGAIQ------PGVNRCKLi~~kDF 261 (641)
T KOG3915|consen 203 AFDLFLKHLVGGLHTVYTKLKRLDITPVVCNVEQVRILRGLGAIQ------PGVNRCKLISRKDF 261 (641)
T ss_pred HHHHHHHHHhchHHHHHHHhhccceeeeeechHHHHHHhcccccc------CCccceeeeecccH
Confidence 3788888888777643332100 012332 0 224443 67777877777776
No 10
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=77.67 E-value=4.9 Score=40.27 Aligned_cols=8 Identities=25% Similarity=0.169 Sum_probs=3.5
Q ss_pred CCcccccC
Q 024070 56 TPKTIEIP 63 (273)
Q Consensus 56 ~~~~~E~~ 63 (273)
...++||-
T Consensus 306 GGR~nE~~ 313 (465)
T KOG3973|consen 306 GGRTNEMV 313 (465)
T ss_pred CCCcccCC
Confidence 33444543
No 11
>PTZ00146 fibrillarin; Provisional
Probab=76.75 E-value=2.8 Score=40.03 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=17.5
Q ss_pred HHHHHHhCCCCcHHHHHHHHHcCCCHHHHHHHHhccCCc
Q 024070 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSV 165 (273)
Q Consensus 127 Lqea~rr~~sLPaDL~~Aae~G~Ir~~iL~rfL~Lqa~p 165 (273)
.++|....+.|-+.+..-++.-.|.+- .+.|+|=+.+
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG--~~VLDLGaG~ 143 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPG--SKVLYLGAAS 143 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCC--CEEEEeCCcC
Confidence 345555555555444443333333333 2345666655
No 12
>PTZ00146 fibrillarin; Provisional
Probab=73.31 E-value=3.9 Score=39.13 Aligned_cols=8 Identities=13% Similarity=-0.251 Sum_probs=5.0
Q ss_pred hhhhhhhh
Q 024070 219 CSYWAAIC 226 (273)
Q Consensus 219 lD~V~adv 226 (273)
+|+|++|+
T Consensus 203 vDvV~~Dv 210 (293)
T PTZ00146 203 VDVIFADV 210 (293)
T ss_pred CCEEEEeC
Confidence 56666665
No 13
>PF02957 TT_ORF2: TT viral ORF2; InterPro: IPR004118 This entry represents the Gyroviral VP2 protein and TT viral ORF2. Torque teno virus (TTV) is a nonenveloped and single-stranded DNA virus that was initially isolated from a Japanese patient with hepatitis of unknown aetiology, and which has since been found to infect both healthy and diseased individuals []. Numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF2 is a 150 residue protein of unknown function. Gyroviruses are small circular single stranded viruses, such as the Chicken anaemia virus. The VP2 protein contains a set of conserved cysteine and histidine residues suggesting a zinc binding domain. VP2 may act as a scaffold protein in virion assembly and may also play a role in intracellular signaling during viral replication.
Probab=72.34 E-value=4.6 Score=33.05 Aligned_cols=8 Identities=13% Similarity=0.439 Sum_probs=3.9
Q ss_pred HHHHHHHH
Q 024070 123 FEEVMKEI 130 (273)
Q Consensus 123 ~eaVLqea 130 (273)
.+++++++
T Consensus 111 ld~L~aa~ 118 (122)
T PF02957_consen 111 LDELFAAA 118 (122)
T ss_pred HHHHhhhh
Confidence 45555443
No 14
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=65.66 E-value=7.7 Score=37.50 Aligned_cols=12 Identities=17% Similarity=-0.039 Sum_probs=6.4
Q ss_pred ccccCCcccccc
Q 024070 59 TIEIPGKITEES 70 (273)
Q Consensus 59 ~~E~~~~~~e~s 70 (273)
+-|+++++|-++
T Consensus 219 t~eTkdLSmStR 230 (314)
T PF06524_consen 219 TQETKDLSMSTR 230 (314)
T ss_pred ccccccceeeee
Confidence 445566655444
No 15
>PRK05325 hypothetical protein; Provisional
Probab=57.85 E-value=14 Score=36.98 Aligned_cols=9 Identities=11% Similarity=-0.016 Sum_probs=4.1
Q ss_pred ccchhhhhh
Q 024070 215 FCTLCSYWA 223 (273)
Q Consensus 215 F~~ElD~V~ 223 (273)
|++++|+-.
T Consensus 202 f~d~~DlRY 210 (401)
T PRK05325 202 FIDPFDLRY 210 (401)
T ss_pred CCCcccccc
Confidence 345545443
No 16
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=57.45 E-value=9 Score=34.94 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=33.1
Q ss_pred HHHcCCCHHHHHHHHhccC---Ccc-hHHHHHHHh--hhhhhhHhcCcc-hhHHHhhh
Q 024070 145 AKTVGIRKMFLLRYLDLQG---SVW-PLGFLMRYC--FMLRDRMLADPS-FLFKVGTE 195 (273)
Q Consensus 145 ae~G~Ir~~iL~rfL~Lqa---~p~-~l~~L~rs~--~g~R~RmLADP~-FlfKlg~E 195 (273)
++.|.|+++.+.+.++... .|. -.+-+-|++ ..||.|+|+||. =+-.+|+.
T Consensus 17 ~ekg~~~~~~~~~~~~~~~~~~~P~~GarvVArAW~Dp~FK~rLLaD~~aA~~elG~~ 74 (188)
T PF02979_consen 17 IEKGLITPAEVDRIIETYESRVGPRNGARVVARAWTDPAFKARLLADPTAAIKELGID 74 (188)
T ss_dssp HHTTSS-HHHHHHHHHHHHHTSSHHHHHHHHHHHHH-HHHHHHHHHSHHHHHHHTT--
T ss_pred HHcCCCCHHHHHHHHHHHHhccCccccceeehhhhCCHHHHHHHHHCHHHHHHHcCCC
Confidence 5678999999999888333 232 134555666 999999999987 33334444
No 17
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=55.98 E-value=18 Score=36.48 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=18.9
Q ss_pred CCCCCCCCCcccccccccHHHHHHHHHHhCC
Q 024070 105 GDGEGNDGEEKEFGPILKFEEVMKEIELKGV 135 (273)
Q Consensus 105 g~g~~~d~~d~efg~il~~eaVLqea~rr~~ 135 (273)
|.+.++.+++++|---++-++++....+-++
T Consensus 102 g~~ag~~egED~F~~~is~~e~~dllFedL~ 132 (423)
T COG2718 102 GQAAGDGEGEDEFVFQISREEVLDLLFEDLE 132 (423)
T ss_pred CCccCCCCCcchhheeeehhHHHHHHHHHhh
Confidence 3334444444555556888888887776554
No 18
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=53.72 E-value=4.3 Score=38.49 Aligned_cols=10 Identities=50% Similarity=0.624 Sum_probs=6.4
Q ss_pred ccccccHHHH
Q 024070 117 FGPILKFEEV 126 (273)
Q Consensus 117 fg~il~~eaV 126 (273)
-|+.+++.||
T Consensus 46 rGRflKIaE~ 55 (263)
T KOG3074|consen 46 RGRFLKIAEV 55 (263)
T ss_pred CcceEEEEEe
Confidence 4777775554
No 19
>PF07631 PSD4: Protein of unknown function (DUF1592); InterPro: IPR013042 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013043 from INTERPRO.
Probab=53.45 E-value=23 Score=29.82 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCCCc-HHHHHHHHHcCCC-HHHHHHHHhccCCcchHHHHHHHhhhhhhhHhcCcch
Q 024070 134 GVGLP-DDMMEAAKTVGIR-KMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSF 188 (273)
Q Consensus 134 ~~sLP-aDL~~Aae~G~Ir-~~iL~rfL~Lqa~p~~l~~L~rs~~g~R~RmLADP~F 188 (273)
-.|.| +.|.+|++.|.++ +++| +.-.+|||+||.+
T Consensus 15 w~s~PD~~L~~aA~~g~L~~~~~l--------------------~~q~~RML~dpr~ 51 (128)
T PF07631_consen 15 WGSPPDAELLDAAAAGELRTPEQL--------------------RAQAERMLADPRA 51 (128)
T ss_pred hcCCCCHHHHHHHHhCCCCCHHHH--------------------HHHHHHHHcCccH
Confidence 34666 7789999999885 3333 3455677777775
No 20
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=51.03 E-value=18 Score=35.97 Aligned_cols=15 Identities=0% Similarity=-0.288 Sum_probs=6.6
Q ss_pred hhhhhhhhHhhhhhh
Q 024070 220 SYWAAICLKRFIWTY 234 (273)
Q Consensus 220 D~V~advv~~~i~df 234 (273)
.-.-++.||-++.|.
T Consensus 197 ~~P~s~AV~fc~MDv 211 (371)
T TIGR02877 197 EKPESNAVVIAMMDT 211 (371)
T ss_pred cCccCcEEEEEEEeC
Confidence 334444444444443
No 21
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=48.59 E-value=14 Score=37.48 Aligned_cols=9 Identities=33% Similarity=0.527 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 024070 139 DDMMEAAKT 147 (273)
Q Consensus 139 aDL~~Aae~ 147 (273)
+|+.+|++.
T Consensus 46 adl~eal~~ 54 (494)
T KOG1456|consen 46 ADLVEALSN 54 (494)
T ss_pred hHHHHHHhc
Confidence 455555544
No 22
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=46.29 E-value=15 Score=24.34 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=14.2
Q ss_pred HHHHHHHcCCCHHHHHHHHhcc
Q 024070 141 MMEAAKTVGIRKMFLLRYLDLQ 162 (273)
Q Consensus 141 L~~Aae~G~Ir~~iL~rfL~Lq 162 (273)
|.+|.++| ++.+.+.+||+.+
T Consensus 9 i~eA~~~G-ls~eeir~FL~~~ 29 (30)
T PF08671_consen 9 IKEAKESG-LSKEEIREFLEFN 29 (30)
T ss_dssp HHHHHHTT---HHHHHHHHHHH
T ss_pred HHHHHHcC-CCHHHHHHHHHhC
Confidence 45566555 9999999999864
No 23
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=44.50 E-value=33 Score=28.89 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=13.4
Q ss_pred CCCCCCCCCcccccceeEeeeccccccc
Q 024070 13 LPNISPQNHNIVMPTTVFLSLRHSTATN 40 (273)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 40 (273)
.|.-+.+..---++++||+.==+..++.
T Consensus 21 ~~~~~~~~~~~~~~~~lfVgnL~~~~te 48 (144)
T PLN03134 21 VPVTSMLGSLRLMSTKLFIGGLSWGTDD 48 (144)
T ss_pred CccccccccccCCCCEEEEeCCCCCCCH
Confidence 3444444443445556666544444443
No 24
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.50 E-value=85 Score=28.77 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=13.0
Q ss_pred CCcHHHHHHHHHc-CCCHH
Q 024070 136 GLPDDMMEAAKTV-GIRKM 153 (273)
Q Consensus 136 sLPaDL~~Aae~G-~Ir~~ 153 (273)
.||.||++|++.. +|.++
T Consensus 58 PL~E~L~~Ai~~aqri~~~ 76 (187)
T COG3028 58 PLDEDLLEAIELAQRIKSE 76 (187)
T ss_pred CCChHHHHHHHHHHHHHHH
Confidence 4689999999875 44444
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=41.51 E-value=40 Score=32.56 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=2.5
Q ss_pred Eeeecc
Q 024070 30 FLSLRH 35 (273)
Q Consensus 30 ~~~~~~ 35 (273)
|+.+..
T Consensus 239 FV~F~~ 244 (346)
T TIGR01659 239 FVRFNK 244 (346)
T ss_pred EEEECC
Confidence 444433
No 26
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=36.35 E-value=49 Score=30.98 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=5.4
Q ss_pred cceeEeeeccc
Q 024070 26 PTTVFLSLRHS 36 (273)
Q Consensus 26 ~~~~~~~~~~s 36 (273)
|...|+-+.|+
T Consensus 45 ppfafVeFEd~ 55 (241)
T KOG0105|consen 45 PPFAFVEFEDP 55 (241)
T ss_pred CCeeEEEecCc
Confidence 33445555554
No 27
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=34.22 E-value=35 Score=26.71 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=19.9
Q ss_pred HHHHh--hhhhhhHhcCcc-hhHHHhhhhhhc
Q 024070 171 LMRYC--FMLRDRMLADPS-FLFKVGTEIVID 199 (273)
Q Consensus 171 L~rs~--~g~R~RmLADP~-FlfKlg~E~vI~ 199 (273)
+.|++ ..||.|+|+||. -|.++|++.--+
T Consensus 10 varAw~Dp~Fr~~Ll~DPraaL~e~G~~~P~~ 41 (77)
T TIGR03793 10 IAKAWEDEAFKQALLTNPKEALEREGVQVPAE 41 (77)
T ss_pred HHHHHcCHHHHHHHHHCHHHHHHHhCCCCCCc
Confidence 34444 899999999998 555566554433
No 28
>PF04360 Serglycin: Serglycin ; InterPro: IPR007455 Serglycin is the most prevalent proteoglycan produced in haemopoietic cells. Serglycin is a proteinase resistant secretory granule proteoglycan [].
Probab=33.78 E-value=18 Score=31.94 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCCCcccccceeEeeecccccccchh-hhhcccCCcCCCCC
Q 024070 18 PQNHNIVMPTTVFLSLRHSTATNPAL-CKLQCVGNNFDSTP 57 (273)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~s~~~~~~~-~~~~C~g~~~~~~~ 57 (273)
+++..||+-..+.|-|.||..--||- +|-|++.-+-++..
T Consensus 4 ~~~~rl~LaLalil~l~ssvqG~P~rrArYqWVrC~PDsns 44 (150)
T PF04360_consen 4 LQCSRLVLALALILVLDSSVQGAPARRARYQWVRCNPDSNS 44 (150)
T ss_pred cccchhHHHHHHHHHhccccccCcchhcceeEEecCCCCCC
Confidence 56778898888899999998877776 56565544444433
No 29
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=33.73 E-value=34 Score=34.67 Aligned_cols=17 Identities=47% Similarity=0.839 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCCCC
Q 024070 97 GGDSGGGGGDGEGNDGE 113 (273)
Q Consensus 97 ~g~gggg~g~g~~~d~~ 113 (273)
|-|.|++.++|+++|+-
T Consensus 98 g~g~g~~ag~~egED~F 114 (423)
T COG2718 98 GSGKGQAAGDGEGEDEF 114 (423)
T ss_pred CCCCCCccCCCCCcchh
Confidence 44555677778888873
No 30
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=30.87 E-value=49 Score=30.96 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=4.8
Q ss_pred CCccccCCCC
Q 024070 73 CEPRIHSSGG 82 (273)
Q Consensus 73 ~~p~i~~~~g 82 (273)
.+-|++-++.
T Consensus 75 LRVEfprggr 84 (241)
T KOG0105|consen 75 LRVEFPRGGR 84 (241)
T ss_pred EEEEeccCCC
Confidence 4445555444
No 31
>PRK05255 hypothetical protein; Provisional
Probab=29.12 E-value=1.8e+02 Score=26.11 Aligned_cols=19 Identities=32% Similarity=0.209 Sum_probs=13.4
Q ss_pred hhhhhhhHhc-CcchhHHHh
Q 024070 175 CFMLRDRMLA-DPSFLFKVG 193 (273)
Q Consensus 175 ~~g~R~RmLA-DP~FlfKlg 193 (273)
+-.||+||++ |+.-+..+.
T Consensus 109 lE~wRdrLi~~~d~al~e~~ 128 (171)
T PRK05255 109 LERWRDRLLAEGDDALTEFL 128 (171)
T ss_pred HHHHHHHHHhCCHHHHHHHH
Confidence 4689999999 565554443
No 32
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=27.84 E-value=77 Score=29.02 Aligned_cols=43 Identities=9% Similarity=-0.042 Sum_probs=31.6
Q ss_pred HHHcCCCHHHHHHHHh-ccC--Cc-chHHHHHHHh--hhhhhhHhcCcc
Q 024070 145 AKTVGIRKMFLLRYLD-LQG--SV-WPLGFLMRYC--FMLRDRMLADPS 187 (273)
Q Consensus 145 ae~G~Ir~~iL~rfL~-Lqa--~p-~~l~~L~rs~--~g~R~RmLADP~ 187 (273)
++.|.|.++.+.+.++ ++. .| .=.+-+.|++ +.||.|+|+|..
T Consensus 11 ~eKGli~~~~id~~i~~~~~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~ 59 (185)
T TIGR01323 11 KSKGLIPEGAVDQLTSLYENEWGPENGAKVVAKAWVDPEFRALLLKDAT 59 (185)
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchhhhhhHHhcCHHHHHHHHhChH
Confidence 4668889999888887 444 33 2245566777 999999999976
No 33
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=27.36 E-value=73 Score=31.06 Aligned_cols=10 Identities=10% Similarity=-0.190 Sum_probs=6.2
Q ss_pred hhhhhhhhhH
Q 024070 219 CSYWAAICLK 228 (273)
Q Consensus 219 lD~V~advv~ 228 (273)
.|.+|+||..
T Consensus 227 VDvIFaDvaq 236 (317)
T KOG1596|consen 227 VDVIFADVAQ 236 (317)
T ss_pred EEEEeccCCC
Confidence 4677776643
No 34
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=26.72 E-value=81 Score=28.94 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=8.0
Q ss_pred cccceeEeeecccccccch
Q 024070 24 VMPTTVFLSLRHSTATNPA 42 (273)
Q Consensus 24 ~~~~~~~~~~~~s~~~~~~ 42 (273)
|-|..|.-.-+.|-++-|+
T Consensus 100 V~P~~V~~~E~~s~a~~~~ 118 (215)
T PF05084_consen 100 VDPFPVLANEGKSEARGPS 118 (215)
T ss_pred CCccccccccccCccccch
Confidence 3344444333444444443
No 35
>PRK12512 RNA polymerase sigma factor; Provisional
Probab=26.61 E-value=1.6e+02 Score=24.47 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=49.2
Q ss_pred HHHHHHHhCCCCcHHHHHHHHH---cCCCHHHHHHHHhccCCcchHHHHHHHhhhhhhhHhcCcc
Q 024070 126 VMKEIELKGVGLPDDMMEAAKT---VGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPS 187 (273)
Q Consensus 126 VLqea~rr~~sLPaDL~~Aae~---G~Ir~~iL~rfL~Lqa~p~~l~~L~rs~~g~R~RmLADP~ 187 (273)
..+++.+...+||..-++.+.+ .+.+-..+-.-|.+...-. -..+.|+...+|++|-+.|.
T Consensus 121 ~~~~l~~~l~~L~~~~r~v~~l~~~~g~s~~eIA~~l~is~~tV-~~~l~ra~~~Lr~~l~~~~~ 184 (184)
T PRK12512 121 PAGDVGRHLETLPPRQRDVVQSISVEGASIKETAAKLSMSEGAV-RVALHRGLAALAAKFRSEPA 184 (184)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHhhcCCC
Confidence 3456667778999999998877 5888888888888888655 67788888999999988773
No 36
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=25.85 E-value=50 Score=31.58 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=10.4
Q ss_pred CcHHHHHHHHHcCCCHHHHH
Q 024070 137 LPDDMMEAAKTVGIRKMFLL 156 (273)
Q Consensus 137 LPaDL~~Aae~G~Ir~~iL~ 156 (273)
-|.++++..+...+-++.|+
T Consensus 90 ~~~~~~~~~ee~~lkSe~L~ 109 (263)
T KOG3074|consen 90 PPPELAAPSEEHELKSEELQ 109 (263)
T ss_pred CCcccccchhhhhHHHHHHh
Confidence 34555555555444444444
No 37
>TIGR00718 sda_alpha L-serine dehydratase, iron-sulfur-dependent, alpha subunit. This enzyme is also called serine deaminase. L-serine dehydratase converts serine into pyruvate in the gluconeogenesis pathway from serine. This model describes the alpha chain of an iron-sulfur-dependent L-serine dehydratase, found in Bacillus subtilis. A fairly deep split in a UPGMA tree separates members of this family of alpha chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=25.57 E-value=2.2e+02 Score=27.60 Aligned_cols=120 Identities=12% Similarity=0.040 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHhCCCCc-HHHHHHHHHcCCCHHHHHHHHhccCCcchHHHHHHHhhhhhhhHhcCcc-hhHHHhhhhhhc
Q 024070 122 KFEEVMKEIELKGVGLP-DDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPS-FLFKVGTEIVID 199 (273)
Q Consensus 122 ~~eaVLqea~rr~~sLP-aDL~~Aae~G~Ir~~iL~rfL~Lqa~p~~l~~L~rs~~g~R~RmLADP~-FlfKlg~E~vI~ 199 (273)
+.+|+++.++++..+|. --++.=.+..+.+.+.+.+++ ...++..+.=.+|=|.... .+-++ ++
T Consensus 4 s~~el~~~c~~~~~~l~e~vl~~E~~~~g~~~~ei~~~m---------~~~~~vM~~~v~~Gl~~~~~~~~gl-----~~ 69 (294)
T TIGR00718 4 NAKEIIDICKEKGIKISDLMIAEEIENSEKTEEDIFKKL---------DANIDVMEAAAQKGLTEGDTSETGL-----ID 69 (294)
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHHhcCCCHHHHHHHH---------HHHHHHHHHHHHhccCCCCcCCCCC-----cC
Q ss_pred ccceeeeeeecccccccchhhhhhhhhhHhhhhh--hheeeeeccccccccchhhhhhh
Q 024070 200 SCCATLAEFQKRGKDFCTLCSYWAAICLKRFIWT--YTKCMWVTSQQVGKAHKHFRFFI 256 (273)
Q Consensus 200 v~~~v~aE~~~Rge~F~~ElD~V~advv~~~i~d--f~l~VwllAPt~~~a~~~~~~f~ 256 (273)
--+.-+.++.++++.+-+++ +.-+......+.+ ..--....+||.+|.|.+|-.++
T Consensus 70 ~~A~~l~~~~~~~~~~~~~~-~~~a~~~A~A~sE~NA~mg~Iv~aPtaGS~GilP~vl~ 127 (294)
T TIGR00718 70 GDAKKLQAYANSGKSISGDF-IADAMAKAFATNEVNAAMGKICAAPTAGSAGIMPAMLF 127 (294)
T ss_pred ccHHHHHHHHHcccccCChH-HHHHHHHHHHHhHHhccCCCeeeCCCCCCCCcchhHHH
No 38
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=23.73 E-value=85 Score=30.66 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=8.3
Q ss_pred ccccceeEeeecccccc
Q 024070 23 IVMPTTVFLSLRHSTAT 39 (273)
Q Consensus 23 ~~~~~~~~~~~~~s~~~ 39 (273)
|.+-..-.|.|||.--|
T Consensus 22 vlLs~V~~LTl~~~~~T 38 (318)
T PF06682_consen 22 VLLSDVQTLTLYAGRMT 38 (318)
T ss_pred EEecccceEEEeCCCcc
Confidence 33434445666665433
No 39
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=23.52 E-value=2.3e+02 Score=26.01 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=31.8
Q ss_pred ccHHHHHHHHHHhCCCCcHHHHHHHHHcCCCHHHHHHHHhccCCcc
Q 024070 121 LKFEEVMKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLDLQGSVW 166 (273)
Q Consensus 121 l~~eaVLqea~rr~~sLPaDL~~Aae~G~Ir~~iL~rfL~Lqa~p~ 166 (273)
++.-++|+...++. ..++-.+.-+|++.+|.||......|.
T Consensus 11 ~~~v~~lr~lk~~~-----ty~el~~~~g~p~~~l~RYv~g~~~P~ 51 (238)
T PRK08558 11 LRAVRVLRSLKKTY-----TYEELSSITGLPESVLNRYVNGHVLPS 51 (238)
T ss_pred HHHHHHHHHHhccc-----CHHHHHHHHCCCHHHHHHHHcCCcCCC
Confidence 44566777777764 456777788999999999999888773
No 40
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=22.63 E-value=1.1e+02 Score=30.98 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=8.8
Q ss_pred ceeEeeecccccccchh
Q 024070 27 TTVFLSLRHSTATNPAL 43 (273)
Q Consensus 27 ~~~~~~~~~s~~~~~~~ 43 (273)
-.-|+...+..+.-+++
T Consensus 331 ~fgFV~f~~~~~~~~~i 347 (419)
T KOG0116|consen 331 CFGFVEFENAAAVQNAI 347 (419)
T ss_pred ceEEEEEeecchhhhhh
Confidence 44566555555444444
No 41
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=22.31 E-value=1.5e+02 Score=29.33 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=8.4
Q ss_pred cCcchhHHHhhhhhh
Q 024070 184 ADPSFLFKVGTEIVI 198 (273)
Q Consensus 184 ADP~FlfKlg~E~vI 198 (273)
|-|.|||-+..=+..
T Consensus 178 AiP~FlfailLiVlF 192 (364)
T COG4174 178 AIPAFLFAILLIVLF 192 (364)
T ss_pred ccHHHHHHHHHHHhh
Confidence 456666665554443
No 42
>PRK12799 motB flagellar motor protein MotB; Reviewed
Probab=22.17 E-value=33 Score=34.63 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=29.4
Q ss_pred hhhhhhhhhhHhhhhhhheeeeeccccc-cccchhhhhhh
Q 024070 218 LCSYWAAICLKRFIWTYTKCMWVTSQQV-GKAHKHFRFFI 256 (273)
Q Consensus 218 ElD~V~advv~~~i~df~l~VwllAPt~-~~a~~~~~~f~ 256 (273)
.|-+.++|+++++.+=|+| ||+++=+- .+-..+..+|.
T Consensus 26 aWkVAYADfvTlLMAFFlL-LwsmSsvd~~k~~~ia~~F~ 64 (421)
T PRK12799 26 SWKIAYADFMTAMMAFFLV-MWLLAVSSPQELTQIAEYFR 64 (421)
T ss_pred chhhhHHHHHHHHHHHHHH-HHHhhcCCHHHHHHHHHHHH
Confidence 5999999999999999998 99998764 23344555554
No 43
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=20.48 E-value=1.2e+02 Score=29.60 Aligned_cols=11 Identities=18% Similarity=0.021 Sum_probs=4.5
Q ss_pred cCcchhHHHhh
Q 024070 184 ADPSFLFKVGT 194 (273)
Q Consensus 184 ADP~FlfKlg~ 194 (273)
.|-.-++|-=|
T Consensus 212 EDArhP~KYRm 222 (317)
T KOG1596|consen 212 EDARHPAKYRM 222 (317)
T ss_pred ccCCCchheee
Confidence 34444444333
No 44
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=20.42 E-value=1.9e+02 Score=21.20 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHhCCCCcHHHHHHHHHcCCCHHHHHHHHh
Q 024070 127 MKEIELKGVGLPDDMMEAAKTVGIRKMFLLRYLD 160 (273)
Q Consensus 127 Lqea~rr~~sLPaDL~~Aae~G~Ir~~iL~rfL~ 160 (273)
++-|.++.--=++.|++|++.-+-+..-+.+||.
T Consensus 23 v~ywa~~~gvt~~~L~~AV~~vG~~~~~V~~~L~ 56 (57)
T PF12244_consen 23 VRYWAKRFGVTEEQLREAVRAVGNSRAAVRAYLG 56 (57)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHCcCHHHHHHHHc
Confidence 3778888888899999999999999999999984
No 45
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=20.32 E-value=82 Score=32.21 Aligned_cols=8 Identities=25% Similarity=0.683 Sum_probs=3.1
Q ss_pred ceeeeeee
Q 024070 202 CATLAEFQ 209 (273)
Q Consensus 202 ~~v~aE~~ 209 (273)
|++=.||+
T Consensus 189 CTLKIeyA 196 (494)
T KOG1456|consen 189 CTLKIEYA 196 (494)
T ss_pred eeEEEEec
Confidence 33334443
No 46
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=20.28 E-value=3e+02 Score=25.03 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=17.6
Q ss_pred hhhhhhHhcCcchhHHHhhhh
Q 024070 176 FMLRDRMLADPSFLFKVGTEI 196 (273)
Q Consensus 176 ~g~R~RmLADP~FlfKlg~E~ 196 (273)
..+.+|||++|.|--+.+.--
T Consensus 58 ~~lVd~LL~sp~y~e~wa~~W 78 (208)
T PF07583_consen 58 EKLVDRLLASPEYAERWARHW 78 (208)
T ss_pred HHHHHHHHCCcHHHHHHHHHH
Confidence 789999999999988777653
No 47
>TIGR00625 tfb2 Transcription factor tfb2. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.26 E-value=85 Score=32.07 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCCc---------HHHHHHHHHcCCCHHHHHHHHhccCCcchHH---------HHH---HHhhhhhhhH
Q 024070 124 EEVMKEIELKGVGLP---------DDMMEAAKTVGIRKMFLLRYLDLQGSVWPLG---------FLM---RYCFMLRDRM 182 (273)
Q Consensus 124 eaVLqea~rr~~sLP---------aDL~~Aae~G~Ir~~iL~rfL~Lqa~p~~l~---------~L~---rs~~g~R~Rm 182 (273)
-++++.--+....+| .-+++|++.| |+.+++.+||+-.++|. ++ -++ |-|..=|+|+
T Consensus 312 ~~il~lF~~~~~r~pnlvvg~iTr~Sv~~A~~~G-ITa~qIi~fl~~~ahp~-~~~~~~~~lP~tv~dQi~lWe~e~~R~ 389 (448)
T TIGR00625 312 IALIALFSELLARFPNMVVGQITRESIRRALANG-ITAQQIIHYLRTHAHPQ-MRKEQTPVLPPTIVDQIRLWELERDRL 389 (448)
T ss_pred HHHHHHHHHHHhcCCceEEEEecHHHHHHHHHcC-CCHHHHHHHHHhcCChh-hhccCCCCCChHHHHHHHHHHHHhcce
Confidence 455655555555554 4567888776 99999999999888776 32 232 3334458999
Q ss_pred hcCcchhHHH
Q 024070 183 LADPSFLFKV 192 (273)
Q Consensus 183 LADP~FlfKl 192 (273)
-..|.+|||=
T Consensus 390 ~~~~~~l~~~ 399 (448)
T TIGR00625 390 RFTEGVLYND 399 (448)
T ss_pred Eeecceeeee
Confidence 9999888864
No 48
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=20.19 E-value=5.4e+02 Score=22.14 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=14.0
Q ss_pred HHHHHHHhhhhhhhHh
Q 024070 168 LGFLMRYCFMLRDRML 183 (273)
Q Consensus 168 l~~L~rs~~g~R~RmL 183 (273)
++.++|.|+-||++|.
T Consensus 124 lqamSrhFR~LRdaI~ 139 (140)
T PF07526_consen 124 LQAMSRHFRCLRDAIS 139 (140)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6888999999999984
No 49
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=20.12 E-value=1.4e+02 Score=29.12 Aligned_cols=8 Identities=0% Similarity=-0.188 Sum_probs=3.4
Q ss_pred hhhhhccc
Q 024070 42 ALCKLQCV 49 (273)
Q Consensus 42 ~~~~~~C~ 49 (273)
.|.||...
T Consensus 233 kyGRQ~~~ 240 (314)
T PF06524_consen 233 KYGRQGQA 240 (314)
T ss_pred hhccccCC
Confidence 34444443
Done!