Query 024070
Match_columns 273
No_of_seqs 111 out of 134
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 17:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l6f_A Focal adhesion kinase 1 62.4 2.2 7.4E-05 38.3 0.0 7 31-37 108-114 (215)
2 3qyh_A CO-type nitrIle hydrata 48.7 13 0.00046 33.4 3.6 52 144-195 47-105 (226)
3 3u6r_H Antibody 1:7 (heavy cha 43.9 4.8 0.00016 32.3 0.0 6 59-64 83-88 (149)
4 3hht_A NitrIle hydratase alpha 41.6 32 0.0011 30.8 4.9 51 145-195 37-94 (216)
5 3ng9_A Capsid protein; beta ba 37.6 11 0.00039 39.0 1.5 12 169-180 298-309 (736)
6 3ntt_A Capsid protein; gene th 35.6 11 0.00039 38.8 1.2 12 169-180 288-299 (724)
7 1ugp_A NitrIle hydratase alpha 32.1 28 0.00097 30.9 3.0 45 145-189 28-78 (203)
8 3a8g_A NitrIle hydratase subun 31.8 17 0.00057 32.4 1.5 43 145-187 31-79 (207)
9 2zzd_C Thiocyanate hydrolase s 30.8 34 0.0012 31.1 3.3 44 144-187 38-86 (243)
10 3p8c_D Wiskott-aldrich syndrom 29.0 13 0.00044 34.3 0.3 12 152-163 252-263 (279)
11 4fm4_A NitrIle hydratase alpha 22.5 29 0.001 30.9 1.3 43 145-187 21-69 (209)
12 4dpv_Z Protein (parvovirus coa 21.8 29 0.001 34.9 1.3 13 169-181 127-139 (584)
13 1lnz_A SPO0B-associated GTP-bi 20.6 52 0.0018 29.9 2.6 8 80-87 31-38 (342)
No 1
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=62.38 E-value=2.2 Score=38.30 Aligned_cols=7 Identities=29% Similarity=0.453 Sum_probs=2.9
Q ss_pred eeecccc
Q 024070 31 LSLRHST 37 (273)
Q Consensus 31 ~~~~~s~ 37 (273)
|+.-|.+
T Consensus 108 LsaaH~L 114 (215)
T 2l6f_A 108 LTAAHAL 114 (215)
Confidence 3444444
No 2
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=48.72 E-value=13 Score=33.44 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=36.8
Q ss_pred HHHHcCCCHHHHHHHHh-ccC--Ccch-HHHHHHHh--hhhhhhHhcCcc-hhHHHhhh
Q 024070 144 AAKTVGIRKMFLLRYLD-LQG--SVWP-LGFLMRYC--FMLRDRMLADPS-FLFKVGTE 195 (273)
Q Consensus 144 Aae~G~Ir~~iL~rfL~-Lqa--~p~~-l~~L~rs~--~g~R~RmLADP~-FlfKlg~E 195 (273)
.++.|.|.++.+.++++ ++. .|.. .+-+-|+| ..||.|||+||. -+-.+|++
T Consensus 47 L~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~Dp~FK~rLL~D~~aAi~elG~~ 105 (226)
T 3qyh_A 47 LIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVDPAYKARLLADGTAGIAELGFS 105 (226)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHTTTCC
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCCHHHHHHHHHCHHHHHHHcCCC
Confidence 35679999999999998 543 3421 34556666 999999999987 44444443
No 3
>3u6r_H Antibody 1:7 (heavy chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}
Probab=43.93 E-value=4.8 Score=32.33 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=2.7
Q ss_pred ccccCC
Q 024070 59 TIEIPG 64 (273)
Q Consensus 59 ~~E~~~ 64 (273)
++.|..
T Consensus 83 sL~I~~ 88 (149)
T 3u6r_H 83 YMELSS 88 (149)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 344444
No 4
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=41.57 E-value=32 Score=30.84 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=36.1
Q ss_pred HHHcCCCHHHHHHHHhc-cC--Ccch-HHHHHHHh--hhhhhhHhcCcc-hhHHHhhh
Q 024070 145 AKTVGIRKMFLLRYLDL-QG--SVWP-LGFLMRYC--FMLRDRMLADPS-FLFKVGTE 195 (273)
Q Consensus 145 ae~G~Ir~~iL~rfL~L-qa--~p~~-l~~L~rs~--~g~R~RmLADP~-FlfKlg~E 195 (273)
++.|.|+++.+.++++. +. .|.. .+-+-|++ ..||.|||+||. -+-.+|++
T Consensus 37 ~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~Dp~FK~rLL~Dp~aAi~elG~~ 94 (216)
T 3hht_A 37 IEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPAFKQRLLEDSETVLRELGYY 94 (216)
T ss_dssp HHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHTCC
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHHHHHcCCC
Confidence 46799999999999984 33 3422 34455666 999999999997 44444443
No 5
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=37.62 E-value=11 Score=38.96 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=5.2
Q ss_pred HHHHHHhhhhhh
Q 024070 169 GFLMRYCFMLRD 180 (273)
Q Consensus 169 ~~L~rs~~g~R~ 180 (273)
.+|+....+||-
T Consensus 298 Q~Lin~~~~irP 309 (736)
T 3ng9_A 298 QRLINNNWGFRP 309 (736)
T ss_dssp HHHHHHEEEEEE
T ss_pred HHHHHhccceec
Confidence 344444444443
No 6
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=35.64 E-value=11 Score=38.85 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=5.0
Q ss_pred HHHHHHhhhhhh
Q 024070 169 GFLMRYCFMLRD 180 (273)
Q Consensus 169 ~~L~rs~~g~R~ 180 (273)
.+|+....+||-
T Consensus 288 Q~Lin~y~~~rP 299 (724)
T 3ntt_A 288 QRLINNYWGFRP 299 (724)
T ss_dssp HHHHHHEEEEEE
T ss_pred HHHHHhhcceec
Confidence 344443444443
No 7
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=32.06 E-value=28 Score=30.89 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=33.1
Q ss_pred HHHcCCCHHHHHHHHh-ccCC--cc-hHHHHHHHh--hhhhhhHhcCcchh
Q 024070 145 AKTVGIRKMFLLRYLD-LQGS--VW-PLGFLMRYC--FMLRDRMLADPSFL 189 (273)
Q Consensus 145 ae~G~Ir~~iL~rfL~-Lqa~--p~-~l~~L~rs~--~g~R~RmLADP~Fl 189 (273)
++.|.|+++.+.++.+ ++.. |. =.+-+.|++ +.||.|+|+|+.=.
T Consensus 28 ~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~Dp~fk~~Ll~d~~aA 78 (203)
T 1ugp_A 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGTEA 78 (203)
T ss_dssp HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHHHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCCHHHHHHHHhChHHH
Confidence 4679999999999988 4444 32 134556666 99999999998743
No 8
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=31.82 E-value=17 Score=32.43 Aligned_cols=43 Identities=9% Similarity=0.067 Sum_probs=31.0
Q ss_pred HHHcCCCHHHHHHHHh-ccCC--cc-hHHHHHHHh--hhhhhhHhcCcc
Q 024070 145 AKTVGIRKMFLLRYLD-LQGS--VW-PLGFLMRYC--FMLRDRMLADPS 187 (273)
Q Consensus 145 ae~G~Ir~~iL~rfL~-Lqa~--p~-~l~~L~rs~--~g~R~RmLADP~ 187 (273)
++.|.|+...+.++.+ ++.. |. =.+-+.|++ +.||.|+|+|+.
T Consensus 31 ~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~DP~Fk~rLL~D~~ 79 (207)
T 3a8g_A 31 DGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGT 79 (207)
T ss_dssp HTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCCHHHHHHHHHCHH
Confidence 4568888888888887 3443 31 134556666 899999999987
No 9
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=30.81 E-value=34 Score=31.14 Aligned_cols=44 Identities=7% Similarity=-0.096 Sum_probs=32.3
Q ss_pred HHHHcCCCHHHHHHHHh-ccCC-cc-hHHHHHHHh--hhhhhhHhcCcc
Q 024070 144 AAKTVGIRKMFLLRYLD-LQGS-VW-PLGFLMRYC--FMLRDRMLADPS 187 (273)
Q Consensus 144 Aae~G~Ir~~iL~rfL~-Lqa~-p~-~l~~L~rs~--~g~R~RmLADP~ 187 (273)
.++.|.|+.+.+.++++ ++.. |. =.+.+-|+| +.||.|+|+|..
T Consensus 38 L~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~DP~fk~~Ll~d~~ 86 (243)
T 2zzd_C 38 AIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLDPEYKKLCIEDGV 86 (243)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCCHHHHHHHHHChH
Confidence 35678999999999888 3333 31 135566777 899999999976
No 10
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=29.02 E-value=13 Score=34.25 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=5.5
Q ss_pred HHHHHHHHhccC
Q 024070 152 KMFLLRYLDLQG 163 (273)
Q Consensus 152 ~~iL~rfL~Lqa 163 (273)
.+||.|-.+|+.
T Consensus 252 a~Il~rr~a~~~ 263 (279)
T 3p8c_D 252 ATILSRRIAVEY 263 (279)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhh
Confidence 344444444443
No 11
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=22.47 E-value=29 Score=30.93 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHcCCCHHHHHHHHh-ccCC--cc-hHHHHHHHh--hhhhhhHhcCcc
Q 024070 145 AKTVGIRKMFLLRYLD-LQGS--VW-PLGFLMRYC--FMLRDRMLADPS 187 (273)
Q Consensus 145 ae~G~Ir~~iL~rfL~-Lqa~--p~-~l~~L~rs~--~g~R~RmLADP~ 187 (273)
+|.|.|....+..|.+ ++.. |. =.+-+-|++ ..||.|+|+|+.
T Consensus 21 ~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~Dp~Fk~~Ll~D~~ 69 (209)
T 4fm4_A 21 KELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTDPVFKAQLLSEGV 69 (209)
T ss_dssp HHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCCHHHHHHHHHHHH
Confidence 3569999999999888 4432 31 135566777 999999999985
No 12
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=21.82 E-value=29 Score=34.90 Aligned_cols=13 Identities=8% Similarity=-0.082 Sum_probs=5.4
Q ss_pred HHHHHHhhhhhhh
Q 024070 169 GFLMRYCFMLRDR 181 (273)
Q Consensus 169 ~~L~rs~~g~R~R 181 (273)
..|+....+||-+
T Consensus 127 Q~Linny~~irPk 139 (584)
T 4dpv_Z 127 QLIVNTMSELHLV 139 (584)
T ss_dssp HHHHHHEEEEEEE
T ss_pred HHHHHhccceecc
Confidence 3444444444433
No 13
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=20.61 E-value=52 Score=29.91 Aligned_cols=8 Identities=50% Similarity=1.024 Sum_probs=3.0
Q ss_pred CCCCCCCC
Q 024070 80 SGGDGGAG 87 (273)
Q Consensus 80 ~~g~gg~g 87 (273)
|+++||+|
T Consensus 31 ggp~gg~g 38 (342)
T 1lnz_A 31 GGPAGGDG 38 (342)
T ss_dssp CCBCCCCC
T ss_pred CCCCCCCC
Confidence 33333333
Done!