Query 024070
Match_columns 273
No_of_seqs 111 out of 134
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 17:42:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024070.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024070hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v29a_ d.149.1.1 (A:) Cobalt- 57.8 4.1 0.0003 34.1 3.9 51 144-194 26-83 (203)
2 d1ugpa_ d.149.1.1 (A:) Cobalt- 48.9 5 0.00036 33.6 3.0 43 145-187 28-76 (203)
3 d1x3zb1 a.189.1.1 (B:253-309) 43.0 5.1 0.00037 27.2 1.7 29 168-196 28-56 (57)
4 d2qdya1 d.149.1.1 (A:10-206) I 34.0 6.9 0.00051 32.5 1.5 49 146-194 23-78 (197)
5 d1b0na1 a.34.1.1 (A:74-108) Si 26.2 15 0.0011 22.7 1.8 21 142-163 10-30 (35)
6 d1r4wa_ c.47.1.13 (A:) Mitocho 21.5 1.4E+02 0.01 21.5 7.9 86 123-223 117-206 (221)
7 d1rp3a2 a.4.13.2 (A:164-234) S 19.1 1E+02 0.0076 19.2 5.3 58 124-182 9-69 (71)
8 d1udxa1 b.117.1.1 (A:1-156) Ob 14.5 55 0.004 25.3 3.1 11 77-87 8-18 (156)
9 d1or7a1 a.4.13.2 (A:120-187) S 14.0 87 0.0063 19.8 3.6 59 123-182 5-66 (68)
10 d1riqa1 a.203.1.1 (A:237-457) 13.2 27 0.0019 28.6 0.9 66 143-217 42-107 (221)
No 1
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=57.76 E-value=4.1 Score=34.11 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=37.5
Q ss_pred HHHHcCCCHHHHHHHHh-ccCC--cc-hHHHHHHHh--hhhhhhHhcCcc-hhHHHhh
Q 024070 144 AAKTVGIRKMFLLRYLD-LQGS--VW-PLGFLMRYC--FMLRDRMLADPS-FLFKVGT 194 (273)
Q Consensus 144 Aae~G~Ir~~iL~rfL~-Lqa~--p~-~l~~L~rs~--~g~R~RmLADP~-FlfKlg~ 194 (273)
.+|.|.|+.+.+.+.++ ++.+ |. =.+-+-|+| ..||.|+|+|+. =+-.+|+
T Consensus 26 LieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~Dp~FK~rLL~D~~aA~~e~G~ 83 (203)
T d1v29a_ 26 LIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTDPEFKQRLLEDPETVLRELGY 83 (203)
T ss_dssp HHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTCHHHHHHHHHSHHHHHHHHTC
T ss_pred HHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcCHHHHHHHHHCHHHHHHHcCC
Confidence 35679999999999998 6654 42 145667777 999999999987 4444444
No 2
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=48.94 E-value=5 Score=33.60 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=33.6
Q ss_pred HHHcCCCHHHHHHHHh-ccC--Ccc-hHHHHHHHh--hhhhhhHhcCcc
Q 024070 145 AKTVGIRKMFLLRYLD-LQG--SVW-PLGFLMRYC--FMLRDRMLADPS 187 (273)
Q Consensus 145 ae~G~Ir~~iL~rfL~-Lqa--~p~-~l~~L~rs~--~g~R~RmLADP~ 187 (273)
++.|.|+++.+.++++ ++. .|. =.+-+-|+| +.||.|+|+|+.
T Consensus 28 ieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~Dp~FK~rLL~D~~ 76 (203)
T d1ugpa_ 28 IEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTDPEFKKRLLADGT 76 (203)
T ss_dssp HHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHCHHHHHHHHHCHH
T ss_pred HHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCCHHHHHHHHHHHH
Confidence 5679999999999999 554 342 135566777 999999999986
No 3
>d1x3zb1 a.189.1.1 (B:253-309) Rad23 STI1 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.04 E-value=5.1 Score=27.23 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhhhhHhcCcchhHHHhhhh
Q 024070 168 LGFLMRYCFMLRDRMLADPSFLFKVGTEI 196 (273)
Q Consensus 168 l~~L~rs~~g~R~RmLADP~FlfKlg~E~ 196 (273)
+-.++...+-+|+.|++||.-...+..|.
T Consensus 28 le~ls~ryp~lre~im~npe~fismllea 56 (57)
T d1x3zb1 28 LENISARYPQLREHIMANPEVFVSMLLEA 56 (57)
T ss_dssp HHHHHTTCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHhCHHHHHHHHHhh
Confidence 34445556899999999999666666664
No 4
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=33.96 E-value=6.9 Score=32.54 Aligned_cols=49 Identities=10% Similarity=0.077 Sum_probs=35.5
Q ss_pred HHcCCCHHHHHHHHh-ccCC--cc-hHHHHHHHh--hhhhhhHhcCcc-hhHHHhh
Q 024070 146 KTVGIRKMFLLRYLD-LQGS--VW-PLGFLMRYC--FMLRDRMLADPS-FLFKVGT 194 (273)
Q Consensus 146 e~G~Ir~~iL~rfL~-Lqa~--p~-~l~~L~rs~--~g~R~RmLADP~-FlfKlg~ 194 (273)
|.|.|..+.+.++++ ++.. |. =.+-+-|+| ..||.|+|+|+. -+-.+|+
T Consensus 23 eKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~Dp~FK~rLL~D~~aAi~elG~ 78 (197)
T d2qdya1 23 GKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTDPEFRQLLLTDGTAAVAQYGY 78 (197)
T ss_dssp TTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHTTC
T ss_pred HcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence 568999999999988 4554 42 135566777 999999999987 4444444
No 5
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=26.20 E-value=15 Score=22.71 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=15.9
Q ss_pred HHHHHHcCCCHHHHHHHHhccC
Q 024070 142 MEAAKTVGIRKMFLLRYLDLQG 163 (273)
Q Consensus 142 ~~Aae~G~Ir~~iL~rfL~Lqa 163 (273)
++|... +|++++...||+.++
T Consensus 10 keAM~S-GvSK~QFrEflef~k 30 (35)
T d1b0na1 10 RDAMTS-GVSKKQFREFLDYQK 30 (35)
T ss_dssp HHHHHS-CCCHHHHHHHHHHHH
T ss_pred HHHHHc-cCCHHHHHHHHHHHH
Confidence 445544 599999999998764
No 6
>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.52 E-value=1.4e+02 Score=21.55 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCC--cHHHHHHHHHcCCCHHHHHHHHhccCCcchHHHHHHHhhhhhhhHhcCcchhHHHhhhhhhcc
Q 024070 123 FEEVMKEIELKGVGL--PDDMMEAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDS 200 (273)
Q Consensus 123 ~eaVLqea~rr~~sL--PaDL~~Aae~G~Ir~~iL~rfL~Lqa~p~~l~~L~rs~~g~R~RmLADP~FlfKlg~E~vI~v 200 (273)
.+++.+.....+.++ +..+.++++.-++....+..+++...+ ..+|+++.++ .+-+.+..|.-
T Consensus 117 ~~~l~~a~~~~g~di~d~~~l~~~a~~~gl~~~~~~~~~~~~~~-----------~~~k~~l~~~----~~~A~~~GvfG 181 (221)
T d1r4wa_ 117 SRELWMRIWSRDEDITESQNILSAAEKAGMATAQAQHLLNKIST-----------ELVKSKLRET----TGAACKYGAFG 181 (221)
T ss_dssp HHHHHHHHHTSCCCCSSHHHHHHHHHHTTCCHHHHHHHHTTTTS-----------HHHHHHHHHH----HHHHHHTTCCS
T ss_pred HHHHHHHHhccCCcccchHHHHHHHHHhCccccccccccccccC-----------HHHHHHHHHH----HHHHHHCCCeE
Confidence 356667777777755 688999999999999999888875554 3456666655 34445555554
Q ss_pred cceeeeeeeccccccc--chhhhhh
Q 024070 201 CCATLAEFQKRGKDFC--TLCSYWA 223 (273)
Q Consensus 201 ~~~v~aE~~~Rge~F~--~ElD~V~ 223 (273)
..+.+..-..+.|-|| +-++++.
T Consensus 182 vPtfvi~~~~~~e~f~G~Drl~~l~ 206 (221)
T d1r4wa_ 182 LPTTVAHVDGKTYMLFGSDRMELLA 206 (221)
T ss_dssp SCEEEEEETTEEEEEESTTCHHHHH
T ss_pred CCEEEEccCCCcceeecccCHHHHH
Confidence 4455554334456677 5576653
No 7
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=19.10 E-value=1e+02 Score=19.19 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHH---cCCCHHHHHHHHhccCCcchHHHHHHHhhhhhhhH
Q 024070 124 EEVMKEIELKGVGLPDDMMEAAKT---VGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRM 182 (273)
Q Consensus 124 eaVLqea~rr~~sLPaDL~~Aae~---G~Ir~~iL~rfL~Lqa~p~~l~~L~rs~~g~R~Rm 182 (273)
++..+........||..-++++.+ .+.+-..+-.-+.++.+-. -..+.|+...+|..|
T Consensus 9 ~e~~~~l~~~l~~L~~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv-~~~~~ra~~~Lr~~L 69 (71)
T d1rp3a2 9 RELTEKVKEAVSKLPEREKLVIQLIFYEELPAKEVAKILETSVSRV-SQLKAKALERLREML 69 (71)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhHhCCHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHc
Confidence 456677778888999999998877 4677777777776665432 455566556666544
No 8
>d1udxa1 b.117.1.1 (A:1-156) Obg GTP-binding protein N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=14.49 E-value=55 Score=25.27 Aligned_cols=11 Identities=45% Similarity=0.912 Sum_probs=6.0
Q ss_pred ccCCCCCCCCC
Q 024070 77 IHSSGGDGGAG 87 (273)
Q Consensus 77 i~~~~g~gg~g 87 (273)
|.--+|.||+|
T Consensus 8 i~v~~G~GG~G 18 (156)
T d1udxa1 8 ITVAAGRGGDG 18 (156)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEecCCCCC
Confidence 33345666666
No 9
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=14.01 E-value=87 Score=19.82 Aligned_cols=59 Identities=15% Similarity=0.097 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHc---CCCHHHHHHHHhccCCcchHHHHHHHhhhhhhhH
Q 024070 123 FEEVMKEIELKGVGLPDDMMEAAKTV---GIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRM 182 (273)
Q Consensus 123 ~eaVLqea~rr~~sLPaDL~~Aae~G---~Ir~~iL~rfL~Lqa~p~~l~~L~rs~~g~R~Rm 182 (273)
.++..+...+-...||..-++++.+- +.+-..+-+-+++..+-. -..+.|+...+|+.|
T Consensus 5 ~~e~~~~l~~~l~~Lp~~~r~v~~l~~~~~~s~~eIA~~lgis~~tv-~~~l~ra~~~Lr~~l 66 (68)
T d1or7a1 5 SEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTV-RSRIFRAREAIDNKV 66 (68)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCHHHHHHHHCcCHHHH-HHHHHHHHHHHHHHc
Confidence 45666777777888999988888764 677777777777666543 455666656666554
No 10
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=13.22 E-value=27 Score=28.59 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=44.1
Q ss_pred HHHHHcCCCHHHHHHHHhccCCcchHHHHHHHhhhhhhhHhcCcchhHHHhhhhhhcccceeeeeeecccccccc
Q 024070 143 EAAKTVGIRKMFLLRYLDLQGSVWPLGFLMRYCFMLRDRMLADPSFLFKVGTEIVIDSCCATLAEFQKRGKDFCT 217 (273)
Q Consensus 143 ~Aae~G~Ir~~iL~rfL~Lqa~p~~l~~L~rs~~g~R~RmLADP~FlfKlg~E~vI~v~~~v~aE~~~Rge~F~~ 217 (273)
-++..|.+|+-.=.-|+ +|.++|+--..-.++-.+..||+++. +.++..-...+-|+.++.+...+
T Consensus 42 f~i~DGv~PsN~grGYv--------lRriiRRa~r~~~~lg~~~~~l~~lv-~~v~~~~~~~ypel~~~~~~I~~ 107 (221)
T d1riqa1 42 FAISDGVIPSNEGRGYV--------IRRILRRAMRFGYKLGIENPFLYKGV-DLVVDIMKEPYPELELSREFVKG 107 (221)
T ss_dssp HHHHTTCCCCSSHHHHH--------HHHHHHHHHHHHHHTTCCSCCHHHHH-HHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHhcCCCCCcCCCchH--------HHHHHHHHHHHHHHhccccchhhhhH-HHHHHHhhhcccchhhHHHHHHH
Confidence 34556777765555554 78888844333356667788999976 77777777777788777665433
Done!