BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024072
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From
Methanobacterium Thermoautotrophicum
Length = 208
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 98/185 (52%), Gaps = 6/185 (3%)
Query: 69 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINR 128
EEAI ++ G ++ PTDT+YG +A +AV R++ +KGR P++ICV V +I R
Sbjct: 17 EEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPR 76
Query: 129 FAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGL 188
F+ L++ +LPGP TVVL R E + + G +G+RVPD R IA
Sbjct: 77 FSRPSGDAMELMERILPGPYTVVLERNEL--IPDVITGGSSRVGIRVPDDEICRRIAARF 134
Query: 189 ESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKIL 248
+ TSAN++G+P S +++ + V D G STV+DLT + ++L
Sbjct: 135 --PVTATSANISGKPPSPRLEEIVRDLDAVDLVLDAGDC-LDMEPSTVIDLT-VNPPRVL 190
Query: 249 RPGSA 253
R G
Sbjct: 191 RRGKG 195
>pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With
L-Threonine And Amppnp
Length = 352
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 101/207 (48%), Gaps = 10/207 (4%)
Query: 71 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 130
A ++ G +A PT+T+YG +A A +I++ K R +PL + + D + + F
Sbjct: 20 AADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQL--FE 77
Query: 131 VTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 187
V +P +L+ + PGP+T VL + E + K + GL+++ VR+P + R
Sbjct: 78 VAKDIPDKVLEIAQIVWPGPLTFVLKKTE--RVPKEVTAGLDTVAVRMPAHPIALQLIRE 135
Query: 188 LESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFK 246
+A SANL +PS +D +L R + DGG G ST++++T +
Sbjct: 136 SGVPIAAPSANLATRPSPTKAEDVIVDLNGRVDVIIDGGHTFFG-VESTIINVT-VEPPV 193
Query: 247 ILRPGSAKEETIAILEKHSLVEEPAAG 273
+LRPG E + L ++ E A G
Sbjct: 194 LLRPGPFTIEELKKLFGEIVIPEFAQG 220
>pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From
Sulfolobus Tokodaii
pdb|4E1B|A Chain A, Re-Refinement Of Pdb Entry 2eqa - Sua5 Protein From
Sulfolobus Tokodaii With Bound
Threonylcarbamoyladenylate
Length = 352
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 100/207 (48%), Gaps = 10/207 (4%)
Query: 71 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 130
A ++ G +A PT+T+YG +A A +I++ K R +PL + + D + + F
Sbjct: 20 AADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQL--FE 77
Query: 131 VTDHLPHGLLD---SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 187
V +P +L+ + PGP+T VL + E + K + GL+++ VR P + R
Sbjct: 78 VAKDIPDKVLEIAQIVWPGPLTFVLKKTE--RVPKEVTAGLDTVAVRXPAHPIALQLIRE 135
Query: 188 LESALALTSANLTGQPSSVSVKD-FENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFK 246
+A SANL +PS +D +L R + DGG G ST++++T +
Sbjct: 136 SGVPIAAPSANLATRPSPTKAEDVIVDLNGRVDVIIDGGHTFFG-VESTIINVT-VEPPV 193
Query: 247 ILRPGSAKEETIAILEKHSLVEEPAAG 273
+LRPG E + L ++ E A G
Sbjct: 194 LLRPGPFTIEELKKLFGEIVIPEFAQG 220
>pdb|1HRU|A Chain A, The Structure Of The Yrdc Gene Product From E.Coli
pdb|1HRU|B Chain B, The Structure Of The Yrdc Gene Product From E.Coli
Length = 188
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Query: 71 AIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF- 129
AI L +VIA PT+ ++G CD S AV R+ E+K R L + + + +
Sbjct: 13 AIDVLNEERVIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANYEQLKPYI 72
Query: 130 ---AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIAR 186
+TD + + S PGPVT V + + L +S+ VRV D V + +
Sbjct: 73 DDTXLTD-VQRETIFSRWPGPVTFVFP--APATTPRWLTGRFDSLAVRVTDHPLVVALCQ 129
Query: 187 GLESALALTSANLTGQPSSVSVKD 210
L TSANL+G P +V +
Sbjct: 130 AYGKPLVSTSANLSGLPPCRTVDE 153
>pdb|1K7J|A Chain A, Structural Genomics, Protein Tf1
Length = 206
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 70 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 129
+A++ ++ G VI PTD+ Y C A RI I+ + D+S+++ +
Sbjct: 19 QAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLSELSTY 78
Query: 130 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLE 189
+ D++ L + PG T +L +G + L ++IG RVP + + + L
Sbjct: 79 SFVDNVAFRLXKNNTPGNYTFIL-KGTKEVPRRLLQEKRKTIGXRVPSNPIAQALLEALG 137
Query: 190 SALALTSANLTGQPSSVSVKDFENLWERCACVYD----GGVLPSGRAGSTVVDLT 240
TS L G S + D E + +R D GG L G+ +TV+DLT
Sbjct: 138 EPXLSTSLXLPG--SEFTESDPEEIKDRLEKQVDLIIHGGYL--GQKPTTVIDLT 188
>pdb|1KK9|A Chain A, Crystal Structure Of E. Coli Ycio
Length = 221
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 9/175 (5%)
Query: 70 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 129
+A++ ++ G VI PTD+ Y C A RI I+ + D+S+++ +
Sbjct: 34 QAVEIVRKGGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLSELSTY 93
Query: 130 AVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLE 189
+ D++ L + PG T +L +G + L ++IG RVP + + + L
Sbjct: 94 SFVDNVAFRLXKNNTPGNYTFIL-KGTKEVPRRLLQEKRKTIGXRVPSNPIAQALLEALG 152
Query: 190 SALALTSANLTGQPSSVSVKDFENLWERCACVYD----GGVLPSGRAGSTVVDLT 240
TS L G S + D E + +R D GG L G+ +TV+DLT
Sbjct: 153 EPXLSTSLXLPG--SEFTESDPEEIKDRLEKQVDLIIHGGYL--GQKPTTVIDLT 203
>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTH|B Chain B, Crystal Structure Of Full-Length Hypf In The Phosphate-
And Nucleotide-Bound Form
pdb|3VTI|A Chain A, Crystal Structure Of Hype-Hypf Complex
pdb|3VTI|B Chain B, Crystal Structure Of Hype-Hypf Complex
Length = 761
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 73 QALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVT 132
+ALK GK++A+ + A +A EAV + K R + P A+ + DV ++ ++ +
Sbjct: 210 KALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKR-YGKPFAVMMRDVEEVKKYCIV 268
Query: 133 DHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESAL 192
LL S P+ ++ +GE L K + L+++GV +P + ++ ++ +
Sbjct: 269 SPEEERLLLSQRR-PIVLLKKKGEK--LAKGIADDLDTLGVMLPYAPIHYLLMEEIDFPI 325
Query: 193 ALTSANLTGQPSSVSVKDFENLWERCACVYD 223
+TS N++ +P KD E E+ + D
Sbjct: 326 VMTSGNVSEEPIC---KDNEEALEKLKDIAD 353
>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl
Phosphate
pdb|3TTD|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Cpp And
Carbamoyl Phosphate
Length = 658
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 76 KTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKH--TSPLAICVGDVSDINRFAVTD 133
K G ++A+ + ACDA +S AV ++ RKH PLA+ V D
Sbjct: 122 KMGNIVAIKGIGGFHLACDARNSNAVA---TLRARKHRPAKPLAV---------MLPVAD 169
Query: 134 HLPHGLLDSLL-PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESAL 192
LP L P V++ + L + PGL +GV +P + ++ + L+ L
Sbjct: 170 GLPDAARQLLTTPAAPIVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPL 229
Query: 193 ALTSANLTGQPSSVS 207
+TS NL+G+P ++S
Sbjct: 230 VMTSGNLSGKPPAIS 244
>pdb|3TSP|A Chain A, Crystal Structure Of E. Coli Hypf
pdb|3TSU|A Chain A, Crystal Structure Of E. Coli Hypf With Amp-Pnp And
Carbamoyl Phosphate
pdb|3TTC|A Chain A, Crystal Structure Of E. Coli Hypf With Adp And Carbamoyl
Phosphate
pdb|3TTF|A Chain A, Crystal Structure Of E. Coli Hypf With Amp And Carbamoyl
Phosphate
Length = 657
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 76 KTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKH--TSPLAICVGDVSDINRFAVTD 133
K G ++A+ + ACDA +S AV ++ RKH PLA+ V D
Sbjct: 122 KMGNIVAIKGIGGFHLACDARNSNAVA---TLRARKHRPAKPLAV---------MLPVAD 169
Query: 134 HLPHGLLDSLL-PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESAL 192
LP L P V++ + L + PGL +GV +P + ++ + L+ L
Sbjct: 170 GLPDAARQLLTTPAAPIVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPL 229
Query: 193 ALTSANLTGQPSSVS 207
+TS NL+G+P ++S
Sbjct: 230 VMTSGNLSGKPPAIS 244
>pdb|4G9I|A Chain A, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|B Chain B, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|C Chain C, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|D Chain D, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|E Chain E, Crystal Structure Of T.Kodakarensis Hypf
pdb|4G9I|F Chain F, Crystal Structure Of T.Kodakarensis Hypf
Length = 772
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 83/187 (44%), Gaps = 16/187 (8%)
Query: 70 EAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGR--KHTSPLAICVGDVSDIN 127
+A + + G ++A+ ACDA + E V E++ R + P AI D+ +
Sbjct: 205 KAAELIDKGYIVAIKGIGGIHLACDAANEEVVA---ELRRRTFRPQKPFAIXAKDIETVK 261
Query: 128 RFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARG 187
FA L S +T L + E L ++L PGL +IGV +P + ++
Sbjct: 262 SFAYVSPEEEEELTSYRRPIIT--LRKKEPFPLPENLAPGLHTIGVXLPYAGTHYILFHW 319
Query: 188 LESALAL-TSANLTGQPSSVSVKDFENLWERCACVYDGGVLPS----GRAGSTVVDLTRL 242
++ + + TSAN G P VKD E +E V D +L + RA +V+
Sbjct: 320 SKTPVYVXTSANYPGXP---XVKDNERAFEELKDVADYFLLHNRKILNRADDSVIRFVD- 375
Query: 243 GKFKILR 249
GK ++R
Sbjct: 376 GKRAVIR 382
>pdb|1OY0|A Chain A, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|B Chain B, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|C Chain C, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|D Chain D, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|E Chain E, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
Length = 281
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 201 GQPSSVSVKDFENLWERCACVYDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETIA 259
G +V ++ E + E+ AC+ G+ G T + LG F++ G A E+TIA
Sbjct: 125 GGAHAVKLEGGERVAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRGDAAEQTIA 183
>pdb|1QR7|A Chain A, Crystal Structure Of Phenylalanine-regulated 3-deoxy-d-
Arabino-heptulosonate-7-phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1QR7|B Chain B, Crystal Structure Of Phenylalanine-regulated 3-deoxy-d-
Arabino-heptulosonate-7-phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1QR7|C Chain C, Crystal Structure Of Phenylalanine-regulated 3-deoxy-d-
Arabino-heptulosonate-7-phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1QR7|D Chain D, Crystal Structure Of Phenylalanine-regulated 3-deoxy-d-
Arabino-heptulosonate-7-phosphate Synthase From
Escherichia Coli Complexed With Pb2+ And Pep
pdb|1GG1|A Chain A, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1GG1|B Chain B, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1GG1|C Chain C, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
pdb|1GG1|D Chain D, Crystal Structure Analysis Of Dahp Synthase In Complex
With Mn2+ And 2-Phosphoglycolate
Length = 350
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 22 GVPKLWFVSFLHLN--RRFPKKMAFSLENGQVSVENKAGLVRPATEAHAEEAIQALKTGK 79
G+P + F H N ++F K+M + Q + ++ E+H E Q+L++G+
Sbjct: 257 GLPAQVMIDFSHANSSKQFKKQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGE 316
Query: 80 VIAVPTDTLYGFA-CDAC 96
+A YG + DAC
Sbjct: 317 PLA------YGKSITDAC 328
>pdb|1N8F|A Chain A, Crystal Structure Of E24q Mutant Of
Phenylalanine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahp Synthase) From Escherichia Coli In Complex With
Mn2+ And Pep
pdb|1N8F|B Chain B, Crystal Structure Of E24q Mutant Of
Phenylalanine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahp Synthase) From Escherichia Coli In Complex With
Mn2+ And Pep
pdb|1N8F|C Chain C, Crystal Structure Of E24q Mutant Of
Phenylalanine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahp Synthase) From Escherichia Coli In Complex With
Mn2+ And Pep
pdb|1N8F|D Chain D, Crystal Structure Of E24q Mutant Of
Phenylalanine-Regulated
3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase
(Dahp Synthase) From Escherichia Coli In Complex With
Mn2+ And Pep
Length = 350
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 22 GVPKLWFVSFLHLN--RRFPKKMAFSLENGQVSVENKAGLVRPATEAHAEEAIQALKTGK 79
G+P + F H N ++F K+M + Q + ++ E+H E Q+L++G+
Sbjct: 257 GLPAQVMIDFSHANSSKQFKKQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGE 316
Query: 80 VIAVPTDTLYGFA-CDAC 96
+A YG + DAC
Sbjct: 317 PLA------YGKSITDAC 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,706,055
Number of Sequences: 62578
Number of extensions: 301553
Number of successful extensions: 768
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 15
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)