Query 024072
Match_columns 273
No_of_seqs 238 out of 1408
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:44:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vth_A Hydrogenase maturation 100.0 9.3E-57 3.2E-61 456.2 19.4 228 34-270 175-425 (761)
2 4g9i_A Hydrogenase maturation 100.0 1.5E-55 5.2E-60 448.7 17.4 233 34-271 170-424 (772)
3 3ttc_A HYPF, transcriptional r 100.0 2.6E-53 9E-58 424.3 21.7 224 34-270 81-328 (657)
4 1k7j_A Protein YCIO, protein T 100.0 2.6E-51 8.8E-56 359.3 22.5 188 64-256 13-203 (206)
5 2eqa_A Hypothetical protein ST 100.0 3E-50 1E-54 376.8 22.1 192 65-260 14-207 (352)
6 1jcu_A Conserved protein MTH16 100.0 7.2E-51 2.4E-55 357.0 16.1 187 65-257 13-199 (208)
7 1hru_A YRDC gene product; prot 100.0 4.5E-49 1.5E-53 340.5 17.7 178 65-249 7-188 (188)
8 3l7v_A Putative uncharacterize 100.0 6.2E-45 2.1E-49 332.8 2.1 161 64-226 42-219 (295)
9 3ven_A O-carbamoyltransferase 97.4 0.0007 2.4E-08 66.9 10.0 148 66-225 397-567 (576)
10 4g9i_A Hydrogenase maturation 74.7 0.82 2.8E-05 46.6 0.9 22 34-55 120-142 (772)
11 3ttc_A HYPF, transcriptional r 73.7 0.79 2.7E-05 45.9 0.5 22 34-55 31-53 (657)
12 3vth_A Hydrogenase maturation 72.6 0.87 3E-05 46.3 0.5 23 33-55 124-147 (761)
13 1hq0_A CNF1, cytotoxic necroti 43.9 6.4 0.00022 35.3 0.8 33 165-203 116-148 (295)
14 2bh1_X General secretion pathw 42.5 90 0.0031 22.2 7.0 54 73-130 20-76 (96)
15 1jns_A Peptidyl-prolyl CIS-tra 36.2 31 0.0011 24.7 3.4 27 66-92 59-86 (92)
16 1snn_A DHBP synthase, 3,4-dihy 35.8 53 0.0018 28.3 5.3 59 67-130 3-67 (227)
17 1g57_A DHBP synthase, 3,4-dihy 35.7 60 0.0021 27.7 5.6 60 65-129 13-78 (217)
18 1tks_A 3,4-dihydroxy-2-butanon 34.5 67 0.0023 27.2 5.7 58 67-129 7-70 (204)
19 1v6t_A Hypothetical UPF0271 pr 30.9 88 0.003 27.4 6.0 88 10-110 138-239 (255)
20 3mio_A DHBP synthase, 3,4-dihy 30.2 87 0.003 26.6 5.7 58 67-129 6-69 (206)
21 3gpk_A PPIC-type peptidyl-prol 29.8 48 0.0017 25.0 3.7 27 66-92 71-98 (112)
22 3p3d_A Nucleoporin 53; structu 29.2 41 0.0014 26.6 3.2 39 69-111 73-111 (132)
23 3ui4_A Peptidyl-prolyl CIS-tra 29.1 31 0.0011 25.4 2.5 27 66-92 62-95 (101)
24 3i6c_A Peptidyl-prolyl CIS-tra 27.2 55 0.0019 25.1 3.7 27 66-92 92-119 (123)
25 2x5e_A UPF0271 protein PA4511; 26.0 53 0.0018 28.8 3.6 76 26-110 169-248 (252)
26 4g2p_A Chaperone SURA; structu 24.6 32 0.0011 25.7 1.8 27 66-92 75-102 (110)
27 2rqs_A Parvulin-like peptidyl- 24.3 50 0.0017 23.8 2.8 27 66-92 66-93 (97)
28 2lj4_A Peptidyl-prolyl CIS-tra 24.2 45 0.0015 25.2 2.6 40 48-92 71-111 (115)
29 2dfa_A Hypothetical UPF0271 pr 22.8 88 0.003 27.3 4.5 89 9-110 137-239 (250)
30 1zk6_A Foldase protein PRSA; a 22.7 40 0.0014 24.0 1.9 27 66-92 61-88 (93)
31 2d28_C XPSE, type II secretion 20.6 2.8E+02 0.0094 20.9 7.0 51 75-129 91-143 (149)
No 1
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=100.00 E-value=9.3e-57 Score=456.23 Aligned_cols=228 Identities=21% Similarity=0.275 Sum_probs=202.5
Q ss_pred cCcCCC-CCCCCCCCCceeEEEcCCCcccCCCHHHHHHHHHHHhcCceEEEecCceEEEEeecCCHHHHHHHHHHhCCCC
Q 024072 34 LNRRFP-KKMAFSLENGQVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKH 112 (273)
Q Consensus 34 ~~RRfh-~~~ac~~cgp~~~~~~~~~~~~~~~~~~i~~a~~~L~~G~IvaiptdtgYgL~cda~n~~AV~rLr~~K~R~~ 112 (273)
.||||| ||+||+.|||++++.+..| ..+.+++|+++|++|+|||+||||||||+|||+|++||+|||++|+||
T Consensus 175 ~~RRfhAqp~aC~~CGP~l~l~~~~~-----~~~~i~~aa~~L~~G~IVa~pt~t~YgL~cda~n~~AV~rL~~~K~Rp- 248 (761)
T 3vth_A 175 HDRRFHAQPVACFDCGPSLSFVGEGC-----FDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY- 248 (761)
T ss_dssp TSTTTTCTTCCCTTTSCCEEEESSCC-----CSCHHHHHHHHHHTTCCEEEECSSSEEEECBTTCHHHHHHHHHHHTCC-
T ss_pred ccccccCCCCcCCccCCeeEEeCCCC-----chHHHHHHHHHHHcCCEEEEECCcEEEEEecCCCHHHHHHHHHHhCCC-
Confidence 499999 9999999999999998776 346799999999999999999999999999999999999999999999
Q ss_pred CCCcEEEECCHHHHhhhhccCCchHHHHhccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhCCCeE
Q 024072 113 TSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESAL 192 (273)
Q Consensus 113 ~KPfavm~~dl~~l~~~~~v~~~~~~ll~~~~PgpiTvIl~~~~~~~l~~~l~~~~~tiGvrlP~~p~~~~Ll~~~g~PL 192 (273)
+|||+||++|++++++|+++++.+++++++ ||||+| ||++++. .+++.++++.+|||||+||||+|++|++.+|.||
T Consensus 249 ~KPl~vmv~dl~~l~~~~~v~~~~~~ll~~-~pgPit-lL~~~~~-~lp~~v~~~~~tvGvRlP~~pl~~~Ll~~~g~PL 325 (761)
T 3vth_A 249 GKPFAVMMRDVEEVKKYCIVSPEEERLLLS-QRRPIV-LLKKKGE-KLAKGIADDLDTLGVMLPYAPIHYLLMEEIDFPI 325 (761)
T ss_dssp SSCCCEECSSHHHHHHHBCCCHHHHHHHHS-TTCCEE-EEEBCSS-CCCTTSSTTCSEEEEECCCSHHHHHHHHHCSSCE
T ss_pred CCCeEEEeCCHHHHHHHccCCHHHHHHHhC-CCCCEE-EEECCCC-CCCHhHcCCCCeEEEEecCCHHHHHHHHHcCCeE
Confidence 899999999999999999999888999998 999998 5777643 5889999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCHHHH-HhhhhcccEEEcCcccCCCCCCCeeEEcccC---------------------CccEEEec
Q 024072 193 ALTSANLTGQPSSVSVKDF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRL---------------------GKFKILRP 250 (273)
Q Consensus 193 v~TSAN~SGep~~~~~~~~-~~~~~~vd~ivd~g~~~~~~~~STVVdl~~~---------------------~~~~IlR~ 250 (273)
+|||||+||+|++++.+++ +++.+.+|+|+|+++....+.+|||||++.+ ....||+.
T Consensus 326 v~TSAN~SG~p~~~~~~e~~~~l~~~vD~iLd~~r~i~~~~~STVvd~~~~~~~iLR~grG~~P~~~~l~~~~~~~vla~ 405 (761)
T 3vth_A 326 VMTSGNVSEEPICKDNEEALEKLKDIADVFLLNNRDIVNRIDDSVTSFNAGAERIIRRARGYAPQPILLKKEVKASILAV 405 (761)
T ss_dssp ECEESSSTTSCCCCSHHHHHHHTTTTCSEEEEESSCCSSCCCCCEECEETTEECCSBCCTTTTTCCEECSSCCSSCEEEC
T ss_pred EEcCcccCCCCCCCCHHHHHHHccCcCCEEEECCCCccCCCCCeEEEEECCcEEEEecCCCCCCCccccCCCCCCcEEEe
Confidence 9999999999999999986 5677889999998754446689999998642 01258888
Q ss_pred CCChHHHHHHHhcCCccccC
Q 024072 251 GSAKEETIAILEKHSLVEEP 270 (273)
Q Consensus 251 G~~~k~~~~l~~~~~~~~~~ 270 (273)
|+.+|||+|+++++..+-.|
T Consensus 406 G~~lknt~~l~~~~~~~~s~ 425 (761)
T 3vth_A 406 GGFYKNTFCMTKGHYAFISH 425 (761)
T ss_dssp CCSTTBCCEEEETTEEEECC
T ss_pred ChhhcceEEEEECCEEEEec
Confidence 88899999988877665444
No 2
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=100.00 E-value=1.5e-55 Score=448.72 Aligned_cols=233 Identities=21% Similarity=0.259 Sum_probs=205.6
Q ss_pred cCcCCC-CCCCCCCCCceeEEEcCCCcccCCCHHHHHHHHHHHhcCceEEEecCceEEEEeecCCHHHHHHHHHHhCCCC
Q 024072 34 LNRRFP-KKMAFSLENGQVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKH 112 (273)
Q Consensus 34 ~~RRfh-~~~ac~~cgp~~~~~~~~~~~~~~~~~~i~~a~~~L~~G~IvaiptdtgYgL~cda~n~~AV~rLr~~K~R~~ 112 (273)
.||||| ||+||+.|||++++.+.+|... ..+++++|+++|++|+|||+||+|||||+|||+|++||++||++|+||
T Consensus 170 ~dRRfhAqp~aC~~CGP~l~l~~~~~~~~--~~~~i~~a~~~l~~G~iva~kg~ggy~L~cda~n~~aV~~lr~~K~Rp- 246 (772)
T 4g9i_A 170 LNRRYHAEPTACPVCGPSYRLYTSDGQEI--YGDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTFRP- 246 (772)
T ss_dssp SSTTTTCTTCCCTTTSCCEEEESSSCBCC--TTHHHHHHHHHHTTSCCEEECCSSSBEEECCTTCHHHHHHHHHHTTCS-
T ss_pred CCCCCcCCCCCCccCCceEEEEcCCCCee--chHHHHHHHHHHHcCCEEEEecCCeeEEEEecCCHHHHHHHHHhhCCC-
Confidence 599999 9999999999999999988765 357899999999999999999999999999999999999999999999
Q ss_pred CCCcEEEECCHHHHhhhhccCCchHHHHhccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhCCC-e
Q 024072 113 TSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLES-A 191 (273)
Q Consensus 113 ~KPfavm~~dl~~l~~~~~v~~~~~~ll~~~~PgpiTvIl~~~~~~~l~~~l~~~~~tiGvrlP~~p~~~~Ll~~~g~-P 191 (273)
+|||+||++|++++++||.+++.++++|.+.| .|+ |++++++...+++.++|+.+|||||+||||+|++|++.+|. |
T Consensus 247 ~kP~avm~~d~~~~~~~~~~~~~e~~~L~s~~-~Pi-vll~~~~~~~l~~~vap~~~~~Gv~lP~~pl~~lL~~~~~~~~ 324 (772)
T 4g9i_A 247 QKPFAIMAKDIETVKSFAYVSPEEEEELTSYR-RPI-ITLRKKEPFPLPENLAPGLHTIGVMLPYAGTHYILFHWSKTPV 324 (772)
T ss_dssp SSCCEEECSSHHHHHHHSCCCHHHHHHHSSTT-CCE-EEEECCSSCCSCTTSCSSCSEEEEECCCSTHHHHHHHSSSSCC
T ss_pred CCCcEEEeCCHHHHHHHhccCchhhhhhccCC-CCC-EEEECCCCCCCChhHCCCCCeEEEEecCCHHHHHHHHhcCCCE
Confidence 69999999999999999999999999999976 454 56666666679999999999999999999999999999986 5
Q ss_pred EEEecCCCCCCCCCCCHHHH-HhhhhcccEEEcCcccCCCCCCCeeEEcccC-------------------CccEEEecC
Q 024072 192 LALTSANLTGQPSSVSVKDF-ENLWERCACVYDGGVLPSGRAGSTVVDLTRL-------------------GKFKILRPG 251 (273)
Q Consensus 192 Lv~TSAN~SGep~~~~~~~~-~~~~~~vd~ivd~g~~~~~~~~STVVdl~~~-------------------~~~~IlR~G 251 (273)
|||||||+||+|++++.++. +++.+.+|+|+++++.+.+|.+++||++..+ ....+|+.|
T Consensus 325 lv~tSaN~sg~P~~~~~~~a~~~L~~~~D~~L~h~R~I~~~~DDSvv~~~~~~~~~lRr~RG~~P~~~~~~~~~~~la~G 404 (772)
T 4g9i_A 325 YVMTSANYPGMPMVKDNERAFEELKDVADYFLLHNRKILNRADDSVIRFVDGKRAVIRRSRGFVPLPIEIPFEYNGLAVG 404 (772)
T ss_dssp CCCEESSCTTSCCBCSHHHHHHHHTTTCSBEEEESSCCCSCCCCCEECCCSSSCCBSCCCTTSTTCCEECSSCCCEEECC
T ss_pred EEECcCCCCCCCCccCHHHHHHhhcCcccEEEECCCCccCccCCceEEEECCeEEEEecCCCCCCCccccCCCCceEEec
Confidence 89999999999999998884 6788889999999887777777888765432 112589999
Q ss_pred CChHHHHHHHhcCCccccCC
Q 024072 252 SAKEETIAILEKHSLVEEPA 271 (273)
Q Consensus 252 ~~~k~~~~l~~~~~~~~~~~ 271 (273)
+.+|||+|+++++..+-.|-
T Consensus 405 ~~lknt~~l~~~~~~~~s~h 424 (772)
T 4g9i_A 405 AELMNAFGVAKNGKVYPSQY 424 (772)
T ss_dssp CSSSCCCEEEETTEEEECSC
T ss_pred hhHcceEEEEeCCEEEEccc
Confidence 99999999988877665543
No 3
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=100.00 E-value=2.6e-53 Score=424.29 Aligned_cols=224 Identities=25% Similarity=0.327 Sum_probs=193.7
Q ss_pred cCcCCC-CCCCCCCCCcee-EEEcCCCcccCCCHHHHHHHHHHHhcCceEEEecCceEEEEeecCCHHHHHHHHHHhCCC
Q 024072 34 LNRRFP-KKMAFSLENGQV-SVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRK 111 (273)
Q Consensus 34 ~~RRfh-~~~ac~~cgp~~-~~~~~~~~~~~~~~~~i~~a~~~L~~G~IvaiptdtgYgL~cda~n~~AV~rLr~~K~R~ 111 (273)
.||||| ||+||+.|||++ ++.+..| . ..++.+++|+++|++|||||+||+|||||+|||+|++||+|||++|+||
T Consensus 81 ~dRRfHAqp~aCp~CGP~l~~l~~~~~-~--~~~~~i~~aa~~L~~G~IVa~pt~ggYgL~cda~n~~AV~rL~~~K~Rp 157 (657)
T 3ttc_A 81 LDRRFHAQPVACPECGPYLEWVSHGEH-A--EQEAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRP 157 (657)
T ss_dssp TSTTTTCTTCCCTTTSCCEEEEETTEE-E--EHHHHHHHHHHHHHTTCCEEEECSSSEEEEEETTCHHHHHHHHHHTTCS
T ss_pred CCCcCcCCCCcCcccCccceEeecCCC-C--cchHHHHHHHHHHHcCCEEEEECCceeEEEeecCCHHHHHHHHHHhCCC
Confidence 499999 999999999999 8877766 1 3457899999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEECCHHHHhhhhccCCchHHHHhccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhCCCe
Q 024072 112 HTSPLAICVGDVSDINRFAVTDHLPHGLLDSLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESA 191 (273)
Q Consensus 112 ~~KPfavm~~dl~~l~~~~~v~~~~~~ll~~~~PgpiTvIl~~~~~~~l~~~l~~~~~tiGvrlP~~p~~~~Ll~~~g~P 191 (273)
+|||+||++|++ ++++.+++++++ ||||+|+|+++++ ..+++.++++.+|||||+|+||+|++|++.+|.|
T Consensus 158 -~KPlavm~~dl~------~v~~~~~~ll~~-~pgPiTli~~~~~-~~lp~~v~~~~~tvGvRlP~~pl~~~Ll~~~g~P 228 (657)
T 3ttc_A 158 -AKPLAVMLPVAD------GLPDAARQLLTT-PAAPIVLVDKKYV-PELCDDIAPGLNEVGVMLPANPLQHLLLQELQCP 228 (657)
T ss_dssp -SSCCCEECSCCT------TSCHHHHHHHTS-TTCCEEEEEGGGC-TTSCTTSSTTCSEEEEECCCSHHHHHHHHHHCSC
T ss_pred -CCCEEEEECChH------HCCHHHHHHHhc-CCCCEEEEEeCCc-CCCCHHHCCCCCceEEEeCCCHHHHHHHHHcCCC
Confidence 799999999988 356677899998 9999999888643 2488999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCHHHH-HhhhhcccEEEcCcccCCCCCCCeeEEccc-----------------C----CccEEEe
Q 024072 192 LALTSANLTGQPSSVSVKDF-ENLWERCACVYDGGVLPSGRAGSTVVDLTR-----------------L----GKFKILR 249 (273)
Q Consensus 192 Lv~TSAN~SGep~~~~~~~~-~~~~~~vd~ivd~g~~~~~~~~STVVdl~~-----------------~----~~~~IlR 249 (273)
|+|||||+||+|++++.+++ +++.+.+|+|+|+++....+.+||||+ .. + ....||+
T Consensus 229 Lv~TSAN~SG~p~~~~~~e~~~~l~~~vD~iLd~gr~i~~~~dsSVV~-~~~~ilRrgrG~~p~~~~l~~~~~~~~~vla 307 (657)
T 3ttc_A 229 LVMTSGNLSGKPPAISNEQALEDLQGIADGFLIHNRDIVQRMDDSVVR-ESGEMLRRSRGYVPDALALPPGFKNVPPVLC 307 (657)
T ss_dssp EEEEECCCTTSCCCCSHHHHHHHHTTTCSEEEEESSCCCSCCCCCEEE-TTCCEEECCTTTTTCCEECCTTCCSEEEEEE
T ss_pred eEECCcccCCCCCCCCHHHHHHHhcCCCeEEEECCCcccCCCCCcEEE-CCCeEEEcCCCCCCCccccCcccCCCCCEEE
Confidence 99999999999999999886 456678999999987666778999987 21 0 0135788
Q ss_pred cCCChHHHHHHHhcCCccccC
Q 024072 250 PGSAKEETIAILEKHSLVEEP 270 (273)
Q Consensus 250 ~G~~~k~~~~l~~~~~~~~~~ 270 (273)
.|+.+|||+|+++++..+-.|
T Consensus 308 ~G~~lknt~~l~~~~~~~~Sq 328 (657)
T 3ttc_A 308 LGADLKNTFCLVRGEQVVLSQ 328 (657)
T ss_dssp CCCSSSCCCEEEEETEEEECC
T ss_pred ecccccceEEEEECCEEEEcc
Confidence 888888888888777655444
No 4
>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A
Probab=100.00 E-value=2.6e-51 Score=359.35 Aligned_cols=188 Identities=23% Similarity=0.430 Sum_probs=170.9
Q ss_pred CHHHHHHHHHHHhcCceEEEecCceEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhhhccCCchHHHHhcc
Q 024072 64 TEAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSL 143 (273)
Q Consensus 64 ~~~~i~~a~~~L~~G~IvaiptdtgYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~~~v~~~~~~ll~~~ 143 (273)
..+.+++|+++|++|+||++||||+|||+|||+|++||+|||++|+|+.+|||++|++|++++++|+++++.++++++++
T Consensus 13 ~~~~i~~a~~~L~~G~iva~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~~~ll~~~ 92 (206)
T 1k7j_A 13 QQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNN 92 (206)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBCCCHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHhcCCHHHHHHHHcC
Confidence 35679999999999999999999999999999999999999999999989999999999999999999888889999999
Q ss_pred CCCCeEEEEccCCCCcccc-ccCCCCCeEEEEcCCcHHHHHHHHhCCCeEEEecCCCCCCCC-CCCHHHH-HhhhhcccE
Q 024072 144 LPGPVTVVLSRGESSNLEK-SLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPS-SVSVKDF-ENLWERCAC 220 (273)
Q Consensus 144 ~PgpiTvIl~~~~~~~l~~-~l~~~~~tiGvrlP~~p~~~~Ll~~~g~PLv~TSAN~SGep~-~~~~~~~-~~~~~~vd~ 220 (273)
||||+|+|+++++ .+++ .++++.+|+|||+|+||++++|++.+|.||++||||+||+|+ +++.+++ +++.+.+|+
T Consensus 93 ~PGp~T~il~~~~--~~p~~~~~~~~~tvgvR~P~~p~~~~Ll~~~g~Pl~~TSAN~sG~~~p~~~~~~~~~~l~~~vd~ 170 (206)
T 1k7j_A 93 TPGNYTFILKGTK--EVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDL 170 (206)
T ss_dssp CSSSEEEEEEBCT--TSCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHHHHHHTTTCSE
T ss_pred CCCCeEEEEECCC--CCCHHHcCCCCCeEEEEecCCHHHHHHHHHhCCceEECCcccCCCCCCCCCHHHHHHHhCCCCcE
Confidence 9999999999865 4777 678899999999999999999999999999999999999986 6888886 456678999
Q ss_pred EEcCcccCCCCCCCeeEEcccCCccEEEecCCChHH
Q 024072 221 VYDGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEE 256 (273)
Q Consensus 221 ivd~g~~~~~~~~STVVdl~~~~~~~IlR~G~~~k~ 256 (273)
|+|+|.+ ++.+|||||++. ++++|||+|.+..+
T Consensus 171 ild~g~~--~~~~STVvd~~~-~~~~ilR~G~g~~~ 203 (206)
T 1k7j_A 171 IIHGGYL--GQKPTTVIDLTD-DTPVVVREGVGDVK 203 (206)
T ss_dssp EEECCCC--CSCCCEEEECGG-GCCEEEECCSSCSG
T ss_pred EEeCCCC--CCCCCeEEEeeC-CcEEEEEeCCCChH
Confidence 9999865 347999999986 56799999998653
No 5
>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*
Probab=100.00 E-value=3e-50 Score=376.76 Aligned_cols=192 Identities=27% Similarity=0.438 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhcCceEEEecCceEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhhh-ccCCchHHHHhcc
Q 024072 65 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA-VTDHLPHGLLDSL 143 (273)
Q Consensus 65 ~~~i~~a~~~L~~G~IvaiptdtgYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~~-~v~~~~~~ll~~~ 143 (273)
.+.+++|+++|++|++|++||||+|||+|||+|++||+|||++|+||.+|||+||++|++++++|+ .+++.+++++++|
T Consensus 14 ~~~i~~aa~~L~~G~iVa~PTeTvYGLg~da~n~~AV~rI~~~K~Rp~~kPliv~v~d~~~l~~~~~~i~~~~~~Ll~~f 93 (352)
T 2eqa_A 14 IDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDIPDKVLEIAQIV 93 (352)
T ss_dssp HHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHEESCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEECCCEeEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHHHhCCHHHHHHHHhC
Confidence 567999999999999999999999999999999999999999999999999999999999999999 7888889999999
Q ss_pred CCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhCCCeEEEecCCCCCCCCCCCHHHH-HhhhhcccEEE
Q 024072 144 LPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDF-ENLWERCACVY 222 (273)
Q Consensus 144 ~PgpiTvIl~~~~~~~l~~~l~~~~~tiGvrlP~~p~~~~Ll~~~g~PLv~TSAN~SGep~~~~~~~~-~~~~~~vd~iv 222 (273)
||||+|+||++++ .+++.++++.+|||||+|+||++++|++.+|.||++||||+||+|++++.+++ +++.+.+|+|+
T Consensus 94 wPGPlTlIlp~~~--~lp~~v~~g~~tvgvRvP~~p~~~~Ll~~~g~PL~atSAN~SG~p~~t~~~~v~~~l~~~vd~iL 171 (352)
T 2eqa_A 94 WPGPLTFVLKKTE--RVPKEVTAGLDTVAVRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNGRVDVII 171 (352)
T ss_dssp CSSSEEEEEEECT--TSCHHHHTTCSEEEEECCCCHHHHHHHHHHTSCEEECBSSCTTSCCCCSHHHHHHHHTTTSSEEE
T ss_pred CCCCEEEEEECCC--cCCHhHcCCCCeEEEEccCcHHHHHHHHHhCCcEEECccccCCCCCCCCHHHHHHHhcCcCCEEe
Confidence 9999999999865 48899999999999999999999999999999999999999999999999985 56777899999
Q ss_pred cCcccCCCCCCCeeEEcccCCccEEEecCCChHHHHHH
Q 024072 223 DGGVLPSGRAGSTVVDLTRLGKFKILRPGSAKEETIAI 260 (273)
Q Consensus 223 d~g~~~~~~~~STVVdl~~~~~~~IlR~G~~~k~~~~l 260 (273)
|+|++.. +.+|||||++. ++++|||+|++..+.+.-
T Consensus 172 dgg~~~~-g~~STVvd~~~-~~~~iLR~G~i~~e~i~~ 207 (352)
T 2eqa_A 172 DGGHTFF-GVESTIINVTV-EPPVLLRPGPFTIEELKK 207 (352)
T ss_dssp ECCCCSS-CSCCEEEECSC-CC-EEEECCSSCHHHHHH
T ss_pred cCCccCC-CCCCeeEECCC-CceEEEcCCCCCHHHHHH
Confidence 9998643 47999999986 567999999998766643
No 6
>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1
Probab=100.00 E-value=7.2e-51 Score=357.03 Aligned_cols=187 Identities=35% Similarity=0.583 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhcCceEEEecCceEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhhhccCCchHHHHhccC
Q 024072 65 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDSLL 144 (273)
Q Consensus 65 ~~~i~~a~~~L~~G~IvaiptdtgYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~~~v~~~~~~ll~~~~ 144 (273)
.+.+++|+++|++|+||++||||+|||+|||+|++||+|||++|+|+.+|||++|++|++++++|+++++.+++++++||
T Consensus 13 ~~~i~~a~~~L~~G~vVa~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~v~~~~~~~~~~~~~~~~~~ll~~~w 92 (208)
T 1jcu_A 13 PDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSRPSGDAMELMERIL 92 (208)
T ss_dssp CHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEECCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhcCCHHHHHHHHhcC
Confidence 46799999999999999999999999999999999999999999999899999999999999999998888899999999
Q ss_pred CCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhCCCeEEEecCCCCCCCCCCCHHHHHhhhhcccEEEcC
Q 024072 145 PGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDG 224 (273)
Q Consensus 145 PgpiTvIl~~~~~~~l~~~l~~~~~tiGvrlP~~p~~~~Ll~~~g~PLv~TSAN~SGep~~~~~~~~~~~~~~vd~ivd~ 224 (273)
|||+|+|+++++ .+++.++++.+|||||+|+||++++|++.+ ||++||||+||+|++++.+++.+.++.+|+|+|+
T Consensus 93 Pgp~T~il~~~~--~~p~~v~~~~~tvgvR~P~~p~~~~Ll~~~--Pl~~TSAN~sG~p~~~~~~~~~~~l~~vd~ild~ 168 (208)
T 1jcu_A 93 PGPYTVVLERNE--LIPDVITGGSSRVGIRVPDDEICRRIAARF--PVTATSANISGKPPSPRLEEIVRDLDAVDLVLDA 168 (208)
T ss_dssp SSSEEEEEEECS--CCCHHHHTTTTEEEEECCSCHHHHHHHHHS--CEEEEECCSSSCCSCSCHHHHHHHSSSSEECCSS
T ss_pred CCCeEEEEeCCc--cCCHhhcCCCCeEEEEeCCCHHHHHHHHHh--HHHccCcccCCCCCCCCHHHHHHHhCcCCEEEeC
Confidence 999999999865 488899999999999999999999999999 9999999999999999999975433889999999
Q ss_pred cccCCCCCCCeeEEcccCCccEEEecCCChHHH
Q 024072 225 GVLPSGRAGSTVVDLTRLGKFKILRPGSAKEET 257 (273)
Q Consensus 225 g~~~~~~~~STVVdl~~~~~~~IlR~G~~~k~~ 257 (273)
|++. .+.+|||||++. ++++|||+|.+..+.
T Consensus 169 g~~~-~~~~STVvd~~~-~~~~ilR~G~~~~~~ 199 (208)
T 1jcu_A 169 GDCL-DMEPSTVIDLTV-NPPRVLRRGKGPLDP 199 (208)
T ss_dssp CCCS-CSCCCEEECCCS-SSCCEEECCCSSCCC
T ss_pred CCcc-CCCCCEEEEeeC-CcEEEEecCCCCHHH
Confidence 9754 457999999985 567999999987643
No 7
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=100.00 E-value=4.5e-49 Score=340.53 Aligned_cols=178 Identities=26% Similarity=0.368 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHhcCceEEEecCceEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhhhc---cCCchHHHHh
Q 024072 65 EAHAEEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAV---TDHLPHGLLD 141 (273)
Q Consensus 65 ~~~i~~a~~~L~~G~IvaiptdtgYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~~~---v~~~~~~ll~ 141 (273)
.+.+++|+++|++|+||++||||+|||+|||+|++||+|||++|+|+.+|||++|++|++++++|+. +++.+++++.
T Consensus 7 ~~~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (188)
T 1hru_A 7 RDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRETIF 86 (188)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHHhhcCCCHHHHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999999998 7777778999
Q ss_pred ccCCCCeEEEEccCCCCccccccCCCCCeEEEEcCCcHHHHHHHHhCCCeEEEecCCCCCCCCCCCHHHHHh-hhhcccE
Q 024072 142 SLLPGPVTVVLSRGESSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFEN-LWERCAC 220 (273)
Q Consensus 142 ~~~PgpiTvIl~~~~~~~l~~~l~~~~~tiGvrlP~~p~~~~Ll~~~g~PLv~TSAN~SGep~~~~~~~~~~-~~~~vd~ 220 (273)
.+||||+|+|+++++ .+++.++++.+|||||+|+||+|++|++.+|.||++||||+||+|++++.+++.+ +.+.+ +
T Consensus 87 ~~~pgP~tlil~~~~--~~p~~v~~~~~tvgvR~p~~p~~~~Ll~~~g~Pl~~TSaN~sG~p~~~~~~~~~~~l~~~v-~ 163 (188)
T 1hru_A 87 SRWPGPVTFVFPAPA--TTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGAAF-P 163 (188)
T ss_dssp TTCSSSEEEEEECCT--TSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHHHHHCTTS-C
T ss_pred hCCCCCEEEEEECCC--CCCHhHcCCCCeEEEEcCCCHHHHHHHHHhCCeEEEccCCCCCCCCCCCHHHHHHHhCCCE-E
Confidence 999999999999865 4888999999999999999999999999999999999999999999999999654 54567 8
Q ss_pred EEcCcccCCCCCCCeeEEcccCCccEEEe
Q 024072 221 VYDGGVLPSGRAGSTVVDLTRLGKFKILR 249 (273)
Q Consensus 221 ivd~g~~~~~~~~STVVdl~~~~~~~IlR 249 (273)
|+|+|....+ .+|||||++.+ +|||
T Consensus 164 ildgg~~~~~-~~STIvd~~~~---~ilR 188 (188)
T 1hru_A 164 VVPGETGGRL-NPSEIRDALTG---ELFR 188 (188)
T ss_dssp BCCCCCCSSC-CCCEEEETTTS---SBCC
T ss_pred EEeCCCCCCC-CCCeEEECcCC---EEEC
Confidence 8998876434 59999999852 5665
No 8
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}
Probab=100.00 E-value=6.2e-45 Score=332.82 Aligned_cols=161 Identities=16% Similarity=0.215 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHh-cCceEEEecCceEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhhhccCCchHHHHhc
Q 024072 64 TEAHAEEAIQALK-TGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFAVTDHLPHGLLDS 142 (273)
Q Consensus 64 ~~~~i~~a~~~L~-~G~IvaiptdtgYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~~~v~~~~~~ll~~ 142 (273)
+.+.+++|+++|+ +|||||+||||||||+| +|++||+|||++|+|+.+|||+||++|++++++|+++++.+++++++
T Consensus 42 ~~~~i~~Aa~~L~~~GgIVa~PTdTvYGL~c--~n~~AV~rL~~iK~Rp~~KPl~vmv~dl~~l~~~~~v~~~~~~Ll~~ 119 (295)
T 3l7v_A 42 DGNLSQEGFEIVKGEGGVIVCPTKVGYIIMT--SDKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQLTPEIDAFYQK 119 (295)
T ss_dssp CSSCCHHHHHHHHSTTCEEEEEETTEEEEEE--SSHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHBCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCEEEEECCCEEEEEE--cCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHhcCCHHHHHHHHh
Confidence 3457899999999 99999999999999999 99999999999999988999999999999999999998889999999
Q ss_pred cCCCCeEE--EEccCCC--Cccc-------cccCCCCCe----EEEEcCCcHHHHHHHHhCCCeEEEecCCCCCCCCCCC
Q 024072 143 LLPGPVTV--VLSRGES--SNLE-------KSLNPGLES----IGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVS 207 (273)
Q Consensus 143 ~~PgpiTv--Il~~~~~--~~l~-------~~l~~~~~t----iGvrlP~~p~~~~Ll~~~g~PLv~TSAN~SGep~~~~ 207 (273)
+||||+|+ ||++++. ..++ +.++++.+| ||||+|+||++++|++.+|.||++||||+||+|++++
T Consensus 120 ~wPGPiTlT~ILp~k~~a~~~lp~~~~~~~~~v~~g~~t~~~~VGVRvP~~pl~~~Ll~~~g~PLvaTSAN~SGep~~~~ 199 (295)
T 3l7v_A 120 HWDEDILLGCILPWKAEAYEKLKAYGDGREELMTDIRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASSANPSGKGNRGK 199 (295)
T ss_dssp HHHHTCCEEEEEEBCHHHHHHHHHTCSCTHHHHSCTTSEEEEEESSCHHHHHHHHHHHHHHCCCCEEEECC-----CTTC
T ss_pred cCCCCceeeEEEECCccccccCCcccccchhhccCCCCCcceeeEEEeCCCHHHHHHHHHcCCCeEECCcccCCCCCCCC
Confidence 99999964 9996531 1244 578899999 9999999999999999999999999999999999999
Q ss_pred HHHH-HhhhhcccEEEcCcc
Q 024072 208 VKDF-ENLWERCACVYDGGV 226 (273)
Q Consensus 208 ~~~~-~~~~~~vd~ivd~g~ 226 (273)
.+++ +++.+.+|+|+|+|+
T Consensus 200 ~ee~~~~L~~~vD~iLd~G~ 219 (295)
T 3l7v_A 200 VEGIGERIESMVDLVIEADD 219 (295)
T ss_dssp GGGSCHHHHHHSSEEEECHH
T ss_pred HHHHHHHhcCcCcEEEeCCC
Confidence 9986 567788999999865
No 9
>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*
Probab=97.36 E-value=0.0007 Score=66.90 Aligned_cols=148 Identities=17% Similarity=0.067 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCceEEEe---------cCceEEEEeecCCHHHHHHHH-HHhCCCCCCCcEEEECCHHHHhhhhccCCc
Q 024072 66 AHAEEAIQALKTGKVIAVP---------TDTLYGFACDACSSEAVNRIY-EIKGRKHTSPLAICVGDVSDINRFAVTDHL 135 (273)
Q Consensus 66 ~~i~~a~~~L~~G~Ivaip---------tdtgYgL~cda~n~~AV~rLr-~~K~R~~~KPfavm~~dl~~l~~~~~v~~~ 135 (273)
+..++++++|.+|+||+.= ..|.=.|.+||.+++..++|- ++|+|..-.|||=++- .|.+.+|-+.+.
T Consensus 397 ~~~~~~A~~la~g~vvgw~qGr~EfGPRALG~RSILadP~~~~~~~~lN~~iK~RE~fRPfAP~vl-~e~a~~~f~~~~- 474 (576)
T 3ven_A 397 NLEREVAALIASGKVVGWAQGRGEVGPRALGQRSLLGSAHSPTMRDHINLRVKDREWWRPFAPSML-RSVSDQVLEVDA- 474 (576)
T ss_dssp THHHHHHHHHHTTCCEEEECSSCBCSSSCCSSEEEEEESSCSSHHHHHHHTTSCCCTTCCCCEEEE-HHHHHHHBSSCS-
T ss_pred cHHHHHHHHHhCCCEEEEEecCccccccccccceeecCCCChHHHHHHHHHhcCCCccCCcChhhh-HHHHHHHcCCCC-
Confidence 3467899999999999763 356667999999999999999 7999999999997776 577888865322
Q ss_pred hHHHHhccCCCCe-EEEEccCC--CCccccccCCCCCe---EEEEcCCcHHHHHHHHh----CCCe-EEEecCCCCCCCC
Q 024072 136 PHGLLDSLLPGPV-TVVLSRGE--SSNLEKSLNPGLES---IGVRVPDSNFVRVIARG----LESA-LALTSANLTGQPS 204 (273)
Q Consensus 136 ~~~ll~~~~Pgpi-TvIl~~~~--~~~l~~~l~~~~~t---iGvrlP~~p~~~~Ll~~----~g~P-Lv~TSAN~SGep~ 204 (273)
|-|+ +++.+-++ ...+|..+. -.+| --|.=-.+|..+.|+++ .|.| |+-||-|..|||+
T Consensus 475 ---------~spyMl~~~~v~~~~r~~ipav~H-vDgTaR~QtV~~~~np~~~~ll~~f~~~TG~pvllNTSfN~~GePi 544 (576)
T 3ven_A 475 ---------DFPYMIMTTKVRAAYAERLPSVVH-EDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTSFNDRGEPI 544 (576)
T ss_dssp ---------CCCSSCSCEEBCGGGTTTCTTTSC-TTSEECCEEECTTTCHHHHHHHHHHHHHHSSCEEEEEESSCTTSCC
T ss_pred ---------CCCceeEeeecCHhHHhhCCcEEe-ccCCccceEECCccCHHHHHHHHHHHHHhCCeEEEECCCCCCCCCC
Confidence 1222 11222221 122433222 1222 33444458888888875 4666 7889999999999
Q ss_pred CCCHHHHHhhh--hcccEEEcCc
Q 024072 205 SVSVKDFENLW--ERCACVYDGG 225 (273)
Q Consensus 205 ~~~~~~~~~~~--~~vd~ivd~g 225 (273)
..+.+|.-+.| ..+|+.+-++
T Consensus 545 V~tp~dA~~~f~~~~lD~Lv~~~ 567 (576)
T 3ven_A 545 VSSPADALLTFSRLPIDALAVGP 567 (576)
T ss_dssp CCSHHHHHHHHHHTTCSEEEETT
T ss_pred CCCHHHHHHHHHhCCCCEEEECC
Confidence 88888854433 3467665444
No 10
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=74.68 E-value=0.82 Score=46.60 Aligned_cols=22 Identities=9% Similarity=0.159 Sum_probs=18.4
Q ss_pred cCcCCCCC-CCCCCCCceeEEEc
Q 024072 34 LNRRFPKK-MAFSLENGQVSVEN 55 (273)
Q Consensus 34 ~~RRfh~~-~ac~~cgp~~~~~~ 55 (273)
.||||+.| +.|..|||++++..
T Consensus 120 ~~rry~ypF~nCt~CGPR~tii~ 142 (772)
T 4g9i_A 120 TNKRYMYPFIVCTNCGPRFTIIE 142 (772)
T ss_dssp TSTTTTCTTCCCTTSSCCGGGCC
T ss_pred CCCccCCccccCCCCCchhhhhh
Confidence 68999965 78999999987753
No 11
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=73.70 E-value=0.79 Score=45.87 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=18.4
Q ss_pred cCcCCCCC-CCCCCCCceeEEEc
Q 024072 34 LNRRFPKK-MAFSLENGQVSVEN 55 (273)
Q Consensus 34 ~~RRfh~~-~ac~~cgp~~~~~~ 55 (273)
.||||+.| +.|..|||+++...
T Consensus 31 ~~Rry~YpF~nCt~CGPR~tii~ 53 (657)
T 3ttc_A 31 GERRYRYPFINCTHCGPRFTIIR 53 (657)
T ss_dssp TSTTTTCTTCCBTTBBCSGGGBS
T ss_pred CCcccCCccccCcCCCchHHhcc
Confidence 58999965 78999999987753
No 12
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=72.56 E-value=0.87 Score=46.33 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.8
Q ss_pred ccCcCCCCC-CCCCCCCceeEEEc
Q 024072 33 HLNRRFPKK-MAFSLENGQVSVEN 55 (273)
Q Consensus 33 ~~~RRfh~~-~ac~~cgp~~~~~~ 55 (273)
-.||||+.| +.|..|||++++..
T Consensus 124 p~~Rry~ypF~nCt~CGPR~tii~ 147 (761)
T 3vth_A 124 PKDRRYRYPFINCTNCGPRFSIIE 147 (761)
T ss_dssp TTSTTTTCTTCCBTTBBCSGGGBC
T ss_pred CCccccCCCcccCCCCCcchhhhc
Confidence 368999965 78999999987753
No 13
>1hq0_A CNF1, cytotoxic necrotizing factor 1; beta sandwich, RHO deamidase, RHO transglutaminase, toxin; 1.83A {Escherichia coli} SCOP: d.194.1.1 PDB: 1hzg_A
Probab=43.86 E-value=6.4 Score=35.27 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=26.2
Q ss_pred CCCCCeEEEEcCCcHHHHHHHHhCCCeEEEecCCCCCCC
Q 024072 165 NPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQP 203 (273)
Q Consensus 165 ~~~~~tiGvrlP~~p~~~~Ll~~~g~PLv~TSAN~SGep 203 (273)
++..+++|++++=..+ +-|.|++.||+++||--
T Consensus 116 NG~rGa~GikI~L~~I------~~g~pviitsG~LSGCT 148 (295)
T 1hq0_A 116 NSARGANGIKIALEEV------QEGKPVIITSGNLSGCT 148 (295)
T ss_dssp CBTEEEEEEEEEGGGC------BTTBCEEEECCCBSSCE
T ss_pred CCCCcceeEEEEHHHc------CCCCeEEEeCCcccCcE
Confidence 4456899999985443 35889999999999974
No 14
>2bh1_X General secretion pathway protein E,; transport protein, type II secretion, EPS, transmembrane, transport, ATP-binding; 2.4A {Vibrio cholerae} SCOP: d.52.10.1
Probab=42.47 E-value=90 Score=22.21 Aligned_cols=54 Identities=7% Similarity=-0.067 Sum_probs=39.7
Q ss_pred HHHhcCceEEEecCc---eEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhhh
Q 024072 73 QALKTGKVIAVPTDT---LYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 130 (273)
Q Consensus 73 ~~L~~G~Ivaiptdt---gYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~~ 130 (273)
+.+++-+++.+.-++ .+-..+|++|..|++.|+..-+ +++-+.+.+.+++.++.
T Consensus 20 ~~arr~~vlPl~~~~~~~l~va~~dP~~~~aldel~~~~g----~~v~~~va~~~~i~~~i 76 (96)
T 2bh1_X 20 SFANRFKLVLDWNEDFSQASIYYLAPLSMEALVETKRVVK----HAFQLIELSQAEFESKL 76 (96)
T ss_dssp HHHHHHTEEEEECSSSCCEEEEECSSCCHHHHHHHHHHHC----SCEEEEECCHHHHHHHH
T ss_pred HHHHHCCEEEEEECCCcEEEEEEcCCCCHHHHHHHHHHhC----CCceEEEcCHHHHHHHH
Confidence 345666777775543 4566899999999999998765 56777778888877653
No 15
>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1 PDB: 1jnt_A
Probab=36.19 E-value=31 Score=24.69 Aligned_cols=27 Identities=7% Similarity=-0.004 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCceE-EEecCceEEEE
Q 024072 66 AHAEEAIQALKTGKVI-AVPTDTLYGFA 92 (273)
Q Consensus 66 ~~i~~a~~~L~~G~Iv-aiptdtgYgL~ 92 (273)
..+++++..|+.|.+- .+.|..|||+.
T Consensus 59 ~~f~~a~~~l~~G~is~pv~t~~G~hIi 86 (92)
T 1jns_A 59 PAFDKVVFSCPVLEPTGPLHTQFGYHII 86 (92)
T ss_dssp HHHHHHHHHSCTTCCEEEEEETTEEEEE
T ss_pred HHHHHHHHhCCCCCcCCcEEECCEEEEE
Confidence 5688899999999995 79999999997
No 16
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=35.82 E-value=53 Score=28.30 Aligned_cols=59 Identities=24% Similarity=0.212 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCceEEEecC------ceEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhhh
Q 024072 67 HAEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRFA 130 (273)
Q Consensus 67 ~i~~a~~~L~~G~Ivaiptd------tgYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~~ 130 (273)
.+++|++.|++|+.|++=.| |-+-+++....++.+..+++- ..-++-+.-+-+.++++-
T Consensus 3 ~ie~Ai~alr~G~~Viv~DdedREnEgDli~aAe~~Tpe~i~fm~~~-----~~GliC~~l~~e~~~~L~ 67 (227)
T 1snn_A 3 NVEKAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKD-----AGGLICTALHPDICNKLG 67 (227)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTTTCCEEEEEEGGGCCHHHHHHHHHH-----TEEEEEEEECHHHHHHHT
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCCceeEEEEhhhCCHHHHHHHHHc-----CCCcEEEEcCHHHHhhCC
Confidence 47899999999999999776 667888888888888877653 244555555666666654
No 17
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=35.65 E-value=60 Score=27.75 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCceEEEecC------ceEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhh
Q 024072 65 EAHAEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 129 (273)
Q Consensus 65 ~~~i~~a~~~L~~G~Ivaiptd------tgYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~ 129 (273)
.+.+++|++.|++|+.|++=.| |-.-+++....++.+..+.+--+ -++-++-+-+.++++
T Consensus 13 ~~~ie~Ai~~lr~G~~Viv~DdedREnEgdli~aAe~~T~e~i~fm~~~~~-----GliCl~lt~~ra~~L 78 (217)
T 1g57_A 13 FERVENALAALREGRGVMVLDDEDRENEGDMIFPAETMTVEQMALTIRHGS-----GIVCLCITEDRRKQL 78 (217)
T ss_dssp HHHHHHHHHHHHTTCCEEEEC----CCCEEEEEETTTCCHHHHHHHHHHBC-----SCCEEEECHHHHHHT
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCcCEEEEEEhhhCCHHHHHHHHHhCC-----CceEEECCHHHHhhC
Confidence 3579999999999999999876 55777777788888888754322 222233345555554
No 18
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=34.47 E-value=67 Score=27.21 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCceEEEecC------ceEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhh
Q 024072 67 HAEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 129 (273)
Q Consensus 67 ~i~~a~~~L~~G~Ivaiptd------tgYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~ 129 (273)
.+++|++.|++|+.|++=.| |-+-+++....++.+..+.+- .+-++-+.-+-+.++++
T Consensus 7 ~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~-----~~GliC~~lt~~~~~~L 70 (204)
T 1tks_A 7 PIEEALEAYKNGEFLIVMDDEDRENEGDLIMAAELITQEKMAFLVRY-----SSGYVCVPLSEERANQL 70 (204)
T ss_dssp CHHHHHHHHHTTCCEEEESSSCTTCBCEEEEEGGGCCHHHHHHHHHT-----BCSCCEEEEEHHHHHHT
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCCCCEEEEEEhhhCCHHHHHHHHHh-----CCCcEEEEcCHHHHhhC
Confidence 48899999999999999876 667888888888888877643 23333333345556555
No 19
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=30.89 E-value=88 Score=27.41 Aligned_cols=88 Identities=22% Similarity=0.257 Sum_probs=51.5
Q ss_pred hccCccccccc-------cCCCeEEEEeecccCcCCCCCCCCCCCCceeEEEcCCCcccCCCHHHHHHHHHHHhcCceE-
Q 024072 10 KLPLLSSRVSL-------IGVPKLWFVSFLHLNRRFPKKMAFSLENGQVSVENKAGLVRPATEAHAEEAIQALKTGKVI- 81 (273)
Q Consensus 10 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~RRfh~~~ac~~cgp~~~~~~~~~~~~~~~~~~i~~a~~~L~~G~Iv- 81 (273)
.|+|++.+-+. .|. ++++=.|. ||.|...-+ |......|-++...++.++++.+++++|.|.
T Consensus 138 ~L~l~~l~gs~~~~~A~~~Gl-~~~~E~FA--DR~Y~~dG~-------LvpR~~~gAvi~d~~~~~~rv~~m~~~g~V~t 207 (255)
T 1v6t_A 138 DLILVTLSNSRVADIAEEMGL-KVAHEVFA--DRAYNPDGT-------LVPRGRPGAVIEDKEEIAERVISMVKDGGIRA 207 (255)
T ss_dssp TCEEEEETTCHHHHHHHHHTC-CEEEEECT--TBCBCTTSC-------BCC-----CBCCCHHHHHHHHHHHHHHSEEEC
T ss_pred CcEEEecCChHHHHHHHHcCC-cEEEEEee--ccccCCCCC-------EecCCCCCCccCCHHHHHHHHHHHHHCCCEEe
Confidence 56666644332 222 23444455 999994221 1112233445533456789999999988764
Q ss_pred ------EEecCceEEEEeecCCHHHHHHHHHHhCC
Q 024072 82 ------AVPTDTLYGFACDACSSEAVNRIYEIKGR 110 (273)
Q Consensus 82 ------aiptdtgYgL~cda~n~~AV~rLr~~K~R 110 (273)
.++.| -|+....++.|++-.+++++.
T Consensus 208 ~~G~~i~i~ad---TiCvHGD~p~Av~~a~~iR~~ 239 (255)
T 1v6t_A 208 INGEWVDLKVD---TICVHGDNPKAVEITSYIRKV 239 (255)
T ss_dssp TTSCEEECCCS---EEECCCSSHHHHHHHHHHHHH
T ss_pred cCCCEeeccCC---EEEECCCCHHHHHHHHHHHHH
Confidence 44444 356677899999988888764
No 20
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=30.22 E-value=87 Score=26.55 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCceEEEecC------ceEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhh
Q 024072 67 HAEEAIQALKTGKVIAVPTD------TLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 129 (273)
Q Consensus 67 ~i~~a~~~L~~G~Ivaiptd------tgYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~ 129 (273)
.+++|++.|++|+.|++=.| |-+-+++..-.++.+..+.+-- +.++-+.-+-+.++++
T Consensus 6 ~ie~Ai~~lr~G~~Viv~DdedREnEgDli~aAe~~T~e~i~fm~~~~-----~GliC~~lt~~~a~~L 69 (206)
T 3mio_A 6 SVERAVADIAAGKAVIVIDDEDRENEGDLIFAAEKATPEMVAFMVRYT-----SGYLCVPLDGAICDRL 69 (206)
T ss_dssp CHHHHHHHHHTTCCEEEESSSCTTCCCEEEEEGGGCCHHHHHHHHHHB-----CSCCEEEECHHHHHHT
T ss_pred hHHHHHHHHHCCCeEEEEeCCCCccceeEEEEhHhCCHHHHHHHHHhC-----CCceEEECCHHHHhhC
Confidence 48899999999999999765 6677778888888888776542 2233333345555554
No 21
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=29.78 E-value=48 Score=24.96 Aligned_cols=27 Identities=7% Similarity=0.167 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCceE-EEecCceEEEE
Q 024072 66 AHAEEAIQALKTGKVI-AVPTDTLYGFA 92 (273)
Q Consensus 66 ~~i~~a~~~L~~G~Iv-aiptdtgYgL~ 92 (273)
..+.+++..|+.|.|- .+.|..||||.
T Consensus 71 ~~f~~a~~~l~~GeiS~pv~t~~G~hIi 98 (112)
T 3gpk_A 71 TELATTAASMGPGQLAGPVEIRGGFSIL 98 (112)
T ss_dssp HHHHHHHHHCCTTCEEEEEEETTEEEEE
T ss_pred HHHHHHHHhCCCCCccceEEECCEEEEE
Confidence 5688999999999995 78999999986
No 22
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=29.17 E-value=41 Score=26.61 Aligned_cols=39 Identities=18% Similarity=0.125 Sum_probs=26.5
Q ss_pred HHHHHHHhcCceEEEecCceEEEEeecCCHHHHHHHHHHhCCC
Q 024072 69 EEAIQALKTGKVIAVPTDTLYGFACDACSSEAVNRIYEIKGRK 111 (273)
Q Consensus 69 ~~a~~~L~~G~IvaiptdtgYgL~cda~n~~AV~rLr~~K~R~ 111 (273)
..|.++|+..|.++ .|+-++|-+.++.++++|-+.|-..
T Consensus 73 ~~A~rAL~~NG~ii----~G~mIGV~Py~~~~ve~l~~~~~~~ 111 (132)
T 3p3d_A 73 ASAVDALLENGAVF----NGVLLGVIPYTKDAVERLQKRKLTS 111 (132)
T ss_dssp HHHHHHHTTTTCEE----TTEECEEEECCHHHHHHHC------
T ss_pred HHHHHHHHhCCeEe----CcEEEEEEECCHHHHHHHhcCCccc
Confidence 45778888766664 3469999999999999998877544
No 23
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} SCOP: d.26.1.1 PDB: 3ui5_A 3ui6_A 1fjd_A 1eq3_A
Probab=29.13 E-value=31 Score=25.37 Aligned_cols=27 Identities=26% Similarity=0.131 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCceE-------EEecCceEEEE
Q 024072 66 AHAEEAIQALKTGKVI-------AVPTDTLYGFA 92 (273)
Q Consensus 66 ~~i~~a~~~L~~G~Iv-------aiptdtgYgL~ 92 (273)
..+++++..|+.|++- .+.|..||||.
T Consensus 62 ~~f~~a~~~l~~G~vs~~~~~~~pv~t~~G~hIi 95 (101)
T 3ui4_A 62 GPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHII 95 (101)
T ss_dssp HHHHHHHHTSCCCBTTBCCBCSSCEEETTEEEEE
T ss_pred HHHHHHHHhCCCCCCccCcccCCcEEECCEEEEE
Confidence 4688899999999886 69999999986
No 24
>3i6c_A Peptidyl-prolyl CIS-trans isomerase NIMA- interacting 1; SBDD, small molecule, ppiase, cell cycle, nucleus, phosphoprotein, rotamase; HET: GIA; 1.30A {Homo sapiens} PDB: 3ik8_A 3ikd_A* 3ikg_A* 3jyj_A* 3kac_A* 1nmw_A
Probab=27.19 E-value=55 Score=25.09 Aligned_cols=27 Identities=33% Similarity=0.273 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCceE-EEecCceEEEE
Q 024072 66 AHAEEAIQALKTGKVI-AVPTDTLYGFA 92 (273)
Q Consensus 66 ~~i~~a~~~L~~G~Iv-aiptdtgYgL~ 92 (273)
..+++++..|+.|.|- .+.|..||||.
T Consensus 92 ~~f~~a~f~l~~GeiS~pv~t~~G~hIi 119 (123)
T 3i6c_A 92 KPFEDASFALRTGEMSGPVFTDSGIHII 119 (123)
T ss_dssp HHHHHHHHHSCTTCBCSCEEETTEEEEE
T ss_pred HHHHHHHHhCCCCCccccEEECCEEEEE
Confidence 5688999999999985 68999999986
No 25
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=25.99 E-value=53 Score=28.78 Aligned_cols=76 Identities=12% Similarity=0.200 Sum_probs=45.8
Q ss_pred EEEEeecccCcCCCCCCCCCCCCceeEEEcCCCcccCCCHHHHHHHHHHHhcCceEEEecCceE----EEEeecCCHHHH
Q 024072 26 LWFVSFLHLNRRFPKKMAFSLENGQVSVENKAGLVRPATEAHAEEAIQALKTGKVIAVPTDTLY----GFACDACSSEAV 101 (273)
Q Consensus 26 ~~~~~~~~~~RRfh~~~ac~~cgp~~~~~~~~~~~~~~~~~~i~~a~~~L~~G~IvaiptdtgY----gL~cda~n~~AV 101 (273)
+++=.|. ||.|...-+ |......|-++...++.++++.+++++|.|..+-|...- -|+....++.|+
T Consensus 169 ~~~E~FA--DR~Y~~dG~-------LvpR~~~gAvi~D~~~~~~rv~~m~~~g~V~t~~G~~i~i~adTiCvHGD~p~Av 239 (252)
T 2x5e_A 169 LLFEAFA--DRAYLPDGR-------LAPRRLGGAVHHDPQRIIEQALAIARGEAFPDYDGNPLRLTADSLCVHGDNPQSL 239 (252)
T ss_dssp EEEEEES--SBCBCTTSS-------BCCTTSTTSBCCCHHHHHHHHHHHHHTCEEECTTSCEEECCCSEEECCSSCHHHH
T ss_pred EEEEEee--ccccCCCCC-------EecCCCCCCccCCHHHHHHHHHHHHHCCCEEecCCCEEeecCCEEEECCCCHHHH
Confidence 3444455 999993221 111123344543345678999999998877443322211 356677899999
Q ss_pred HHHHHHhCC
Q 024072 102 NRIYEIKGR 110 (273)
Q Consensus 102 ~rLr~~K~R 110 (273)
+-.+++++.
T Consensus 240 ~~a~~iR~~ 248 (252)
T 2x5e_A 240 AVLRRLRAA 248 (252)
T ss_dssp HTCTTSSCC
T ss_pred HHHHHHHHH
Confidence 988877654
No 26
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}
Probab=24.60 E-value=32 Score=25.66 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhcCceE-EEecCceEEEE
Q 024072 66 AHAEEAIQALKTGKVI-AVPTDTLYGFA 92 (273)
Q Consensus 66 ~~i~~a~~~L~~G~Iv-aiptdtgYgL~ 92 (273)
..+.+++..|+.|.|- .+.|..||||.
T Consensus 75 ~~f~~a~~~l~~Geis~pv~t~~G~hIi 102 (110)
T 4g2p_A 75 PAFRDALTKLHKGQISAPVHSSFGWHLI 102 (110)
T ss_dssp HHHHHHHHTCCTTCBCCCEEETTEEEEE
T ss_pred HHHHHHHHcCCCCCcCccEEECCEEEEE
Confidence 4688999999999997 68999999986
No 27
>2rqs_A Parvulin-like peptidyl-prolyl isomerase; CIS/trans isomerisation, cenarcheaum symbiosum, low temperat NIMA-kinase, PIN1, cell cycle; NMR {Cenarchaeum symbiosum}
Probab=24.30 E-value=50 Score=23.84 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCceE-EEecCceEEEE
Q 024072 66 AHAEEAIQALKTGKVI-AVPTDTLYGFA 92 (273)
Q Consensus 66 ~~i~~a~~~L~~G~Iv-aiptdtgYgL~ 92 (273)
..+++++..|+.|.+- .+.|..||||.
T Consensus 66 ~~f~~a~~~l~~G~is~pv~t~~G~hIi 93 (97)
T 2rqs_A 66 KPFEDAAFRLQVGEVSEPVKSEFGYHVI 93 (97)
T ss_dssp HHHHHHHTTCTTSCBCCCEECSSCEEEE
T ss_pred HHHHHHHHcCCCCCccccEEECCEEEEE
Confidence 5688889899999985 78999999986
No 28
>2lj4_A Peptidyl-prolyl CIS-trans isomerase/rotamase, PUT; tbpin1; NMR {Trypanosoma brucei}
Probab=24.21 E-value=45 Score=25.22 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=29.3
Q ss_pred CceeEEEcCCCcccCCCHHHHHHHHHHHhcCceE-EEecCceEEEE
Q 024072 48 NGQVSVENKAGLVRPATEAHAEEAIQALKTGKVI-AVPTDTLYGFA 92 (273)
Q Consensus 48 gp~~~~~~~~~~~~~~~~~~i~~a~~~L~~G~Iv-aiptdtgYgL~ 92 (273)
|..|-+.... . ....+++++..|+.|.|- .+.|.-||||.
T Consensus 71 GGdLG~~~~~-~----~~~~f~~a~~~l~~GeiS~pv~t~~G~HII 111 (115)
T 2lj4_A 71 GGDLGFFSSG-E----MMKPFEDAVRALKIGDISPIVQTDSGLHII 111 (115)
T ss_dssp TSEEEEEETT-S----SCHHHHHHHTTSCBTCBCCCEECSSSEEEE
T ss_pred CCccceecCC-C----CCchHHHHHhcCCCCCCCCcEEeCCeEEEE
Confidence 5556554433 1 235688899999999984 68999999986
No 29
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=22.84 E-value=88 Score=27.33 Aligned_cols=89 Identities=19% Similarity=0.259 Sum_probs=49.7
Q ss_pred hhccCccccccc-------cCCCeEEEEeecccCcCCCCCCCCCCCCceeEEEcCCCcccCCCHHHHHHHHHHHhcCceE
Q 024072 9 EKLPLLSSRVSL-------IGVPKLWFVSFLHLNRRFPKKMAFSLENGQVSVENKAGLVRPATEAHAEEAIQALKTGKVI 81 (273)
Q Consensus 9 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~RRfh~~~ac~~cgp~~~~~~~~~~~~~~~~~~i~~a~~~L~~G~Iv 81 (273)
..|+|++.+-+. .|. ++++=.|. ||.|...-+ |......|-++...++.++++.+++++|.|.
T Consensus 137 ~~L~l~~l~gs~~~~~A~~~Gl-~~~~E~FA--DR~Y~~dG~-------LvpR~~~gAvi~d~~~~~~rv~~m~~~g~V~ 206 (250)
T 2dfa_A 137 PGLPLVVLPGTVYEEEARKAGL-RVVLEAFP--ERAYLRSGQ-------LAPRSMPGSWITDPEEAARRALRMVLEGKVE 206 (250)
T ss_dssp TTCCEEECTTSHHHHHHHHTTC-CEEEEECT--TBCBCTTSS-------BCCTTSTTCBCCCHHHHHHHHHHHHHTSEEE
T ss_pred CCcEEEecCChHHHHHHHHcCC-cEEEEEee--ccccCCCCC-------EecCCCCCCccCCHHHHHHHHHHHHHCCCEE
Confidence 356777654432 222 23444455 999994221 1111233445433456789999999988764
Q ss_pred -------EEecCceEEEEeecCCHHHHHHHHHHhCC
Q 024072 82 -------AVPTDTLYGFACDACSSEAVNRIYEIKGR 110 (273)
Q Consensus 82 -------aiptdtgYgL~cda~n~~AV~rLr~~K~R 110 (273)
.++.| -|+....++.|++-.+++++.
T Consensus 207 t~~G~~i~i~ad---TiCvHGD~p~Av~~a~~iR~~ 239 (250)
T 2dfa_A 207 ALDGGEVAVRAD---TLCIHGDNPNAPEVARAVREA 239 (250)
T ss_dssp BTTSSEEECCCS---EEEEC---CCHHHHHHHHHHH
T ss_pred ecCCCEeeccCC---EEEECCCCHHHHHHHHHHHHH
Confidence 34444 345666788888888777653
No 30
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=22.72 E-value=40 Score=24.03 Aligned_cols=27 Identities=33% Similarity=0.289 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCceE-EEecCceEEEE
Q 024072 66 AHAEEAIQALKTGKVI-AVPTDTLYGFA 92 (273)
Q Consensus 66 ~~i~~a~~~L~~G~Iv-aiptdtgYgL~ 92 (273)
..+.+++..|+.|.+- .+.|..||||.
T Consensus 61 ~~f~~a~~~l~~G~is~pv~t~~G~hIi 88 (93)
T 1zk6_A 61 ETFSKAAFKLKTGEVSDPVKTQYGYHII 88 (93)
T ss_dssp TTHHHHHHHSCTTCBCCCEECSSCEEEE
T ss_pred HHHHHHHHcCCCCCccceEEECCEEEEE
Confidence 3578888899999885 68999999986
No 31
>2d28_C XPSE, type II secretion ATPase XPSE; alpha-beta sandwich, protein transport; 2.00A {Xanthomonas campestris} SCOP: d.52.10.1 PDB: 2d27_A
Probab=20.58 E-value=2.8e+02 Score=20.86 Aligned_cols=51 Identities=25% Similarity=0.304 Sum_probs=37.0
Q ss_pred HhcCceEEEe--cCceEEEEeecCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHhhh
Q 024072 75 LKTGKVIAVP--TDTLYGFACDACSSEAVNRIYEIKGRKHTSPLAICVGDVSDINRF 129 (273)
Q Consensus 75 L~~G~Ivaip--tdtgYgL~cda~n~~AV~rLr~~K~R~~~KPfavm~~dl~~l~~~ 129 (273)
+++-+++-+. +.+.+-..+||+|..+++.|+..=+ +++...+.+.+++.++
T Consensus 91 a~r~~vlPl~~~~~~l~va~~dP~~~~~l~~l~~~~g----~~v~~~la~~~~i~~~ 143 (149)
T 2d28_C 91 LKQFHLCPVGERDGRLDLWIADPYDDYAIDAVRLATG----LPLLLHVGLRSEIDDL 143 (149)
T ss_dssp HHHHTEEEEEEETTEEEEEESCTTCHHHHHHHHHHHC----SCEEEEECCHHHHHHH
T ss_pred HHHcCEEeEEEECCEEEEEEeCCCCHHHHHHHHHHHC----CCeEEEEeCHHHHHHH
Confidence 3444555443 4556777899999999999987764 5677778888887765
Done!