BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024073
         (273 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
           Resonance Spectroscopy; A New Structural Class Of Zinc-
           Finger
          Length = 68

 Score = 37.4 bits (85), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 260
           CP+C +  +N S+       FCY CI +++ Q   CP+  +P
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49


>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
           Finger Protein 141
          Length = 70

 Score = 29.3 bits (64), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262
           D   C +C   RA+  ++      FC  CI K+  +++ CP+  +  T
Sbjct: 14  DEEECCICMDGRAD--LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59


>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
           Receptor-Associated Factor 6 Protein
          Length = 86

 Score = 27.7 bits (60), Expect = 6.4,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-KRCPV 256
           CP+C       +V T  G  FC ACI K +     +CPV
Sbjct: 28  CPICLMA-LREAVQTPCGHRFCKACIIKSIRDAGHKCPV 65


>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Polycomb Group Ring Finger Protein 6
          Length = 72

 Score = 27.7 bits (60), Expect = 7.1,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 218 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCP 255
           +C +C     + + +T     FC +CI ++     RCP
Sbjct: 17  LCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCP 54


>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
          Length = 63

 Score = 27.3 bits (59), Expect = 8.2,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)

Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-KRCPV 256
           CP+C       +V T  G  FC ACI K +     +CPV
Sbjct: 9   CPICLMA-LREAVQTPCGHRFCKACIIKSIRDAGHKCPV 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.446 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,450,405
Number of Sequences: 62578
Number of extensions: 271247
Number of successful extensions: 539
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 536
Number of HSP's gapped (non-prelim): 11
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)