BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024073
(273 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M841|PEX12_ARATH Peroxisome biogenesis protein 12 OS=Arabidopsis thaliana GN=PEX12
PE=1 SV=2
Length = 393
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/272 (75%), Positives = 234/272 (86%)
Query: 1 MVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSV 60
+VVLPYFKSKLH++YNKEREARL+ SLWG D+ FD+ D+F G + + + E SV
Sbjct: 121 LVVLPYFKSKLHAIYNKEREARLRESLWGAEDQGFDEADFFTGDDSIVSREPSGNEELSV 180
Query: 61 RTSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQE 120
R L KI+K I CYPW+HAS EGLSFTYQLLYLLDATGFYS+GL ALGI VCRATGQE
Sbjct: 181 RVQLATKIKKFIAVCYPWIHASSEGLSFTYQLLYLLDATGFYSLGLQALGIQVCRATGQE 240
Query: 121 LMDNSSRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWW 180
LMD SSRISKIR+ ERERL GP WLK +QGALLSC+Y +LDYAQTGLIAAVF FKMMEWW
Sbjct: 241 LMDTSSRISKIRNHERERLRGPPWLKTVQGALLSCSYAVLDYAQTGLIAAVFIFKMMEWW 300
Query: 181 YQSAEERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFC 240
YQSAEER+SAPTVYPPPPPPP PK+A+EGIPLPPDR++C LC QKRANPSVVTVSGFVFC
Sbjct: 301 YQSAEERLSAPTVYPPPPPPPAPKMAKEGIPLPPDRSLCALCLQKRANPSVVTVSGFVFC 360
Query: 241 YACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 272
Y+C+FKYVS+YKRCPVTL+PA+V+QIRRLF D
Sbjct: 361 YSCVFKYVSKYKRCPVTLIPASVDQIRRLFQD 392
>sp|Q54N40|PEX12_DICDI Putative peroxisome assembly protein 12 OS=Dictyostelium discoideum
GN=pex12 PE=3 SV=1
Length = 459
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 123/206 (59%), Gaps = 5/206 (2%)
Query: 66 KKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNS 125
KK++ I YP++ A E L F YQLLYL + T +Y+ H I + R +++ +
Sbjct: 257 KKLKTIFLKVYPFISAIYEALFFIYQLLYLYEYTNYYTPFFHFQNIQLKRLNHKDIESHR 316
Query: 126 SRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWYQSAE 185
IS R R+R + L+S ++LDY++ L +VF FK +EWWY +E
Sbjct: 317 VVISN-RRRDRINFVRDWPGSSFFVRLVSILDSILDYSKYILPLSVFIFKSLEWWY--SE 373
Query: 186 ERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIF 245
R+SAPT+ P P PP P K A G+ +P D+ +CPLC ++R NP++ SGFVFCY CIF
Sbjct: 374 NRISAPTL-PIPTPPTPSKRAPGGLEIPRDKRLCPLCLKERTNPTICG-SGFVFCYPCIF 431
Query: 246 KYVSQYKRCPVTLMPATVEQIRRLFH 271
YV+++ +CP+T +P EQ+R+++
Sbjct: 432 GYVNEHSKCPITFLPTNTEQLRKIYE 457
>sp|O88177|PEX12_RAT Peroxisome assembly protein 12 OS=Rattus norvegicus GN=Pex12 PE=2
SV=1
Length = 359
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 109/207 (52%), Gaps = 6/207 (2%)
Query: 66 KKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNS 125
K+ ++ A YP++ + EG T QL Y+L +S L G+ + R T Q++
Sbjct: 153 KRFYRVFLAAYPFVTMTWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLGRLTAQDIQAME 212
Query: 126 SRISKIRS-RERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWYQSA 184
R+ + + +E R +G KK++ AL + TGL VFF + ++WWY S
Sbjct: 213 HRLVEASAMQEPVRSIG----KKIKSALKKAVGGVALSLSTGLSVGVFFLQFLDWWYSSE 268
Query: 185 -EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYAC 243
+E + + T P PPPP + LP +T+CPLC + R N +V+ SG+VFCY C
Sbjct: 269 NQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKARVNDTVLATSGYVFCYRC 328
Query: 244 IFKYVSQYKRCPVTLMPATVEQIRRLF 270
+F YV ++ CP+T P V+ + +L+
Sbjct: 329 VFNYVRSHQACPITGYPTEVQHLIKLY 355
>sp|Q8VC48|PEX12_MOUSE Peroxisome assembly protein 12 OS=Mus musculus GN=Pex12 PE=2 SV=1
Length = 359
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 111/211 (52%), Gaps = 6/211 (2%)
Query: 62 TSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQEL 121
+S K+ + A YP+++ + EG T QL Y+L +S L G+ + R T Q++
Sbjct: 149 SSRWKRFYRAFLAAYPFVNMAWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLARLTAQDM 208
Query: 122 MDNSSRISKIRS-RERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWW 180
R+ + + +E R +G +K++ AL + TGL VFF + ++WW
Sbjct: 209 QAIKQRLVEASAMQEPVRSVG----EKIKSALKKAVGGVALSLSTGLSVGVFFLQFLDWW 264
Query: 181 YQSA-EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVF 239
Y S +E + + T P PPPP + LP +T+CPLC + R N +V+ SG+VF
Sbjct: 265 YSSENQEAIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVF 324
Query: 240 CYACIFKYVSQYKRCPVTLMPATVEQIRRLF 270
CY C+F YV ++ CP+T P V+ + +L+
Sbjct: 325 CYRCVFNYVRSHQACPITGYPTEVQHLIKLY 355
>sp|Q9ET67|PEX12_CRILO Peroxisome assembly protein 12 OS=Cricetulus longicaudatus GN=PEX12
PE=2 SV=1
Length = 359
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 109/207 (52%), Gaps = 6/207 (2%)
Query: 66 KKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNS 125
K+ + A YP+++ + EG T QL Y+L +S L G+ + R T Q++
Sbjct: 153 KRFYRAFLAAYPFVNMAWEGWFLTQQLRYILGKAEHHSPLLKLAGVRLGRLTAQDIQAIE 212
Query: 126 SRISKIRS-RERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWYQSA 184
R+S+ ++ R +G +K++ AL + TGL VFF + ++WWY S
Sbjct: 213 HRLSEASVMQDPVRSVG----EKIKLALKKAVGGIALSLSTGLSVGVFFLQFLDWWYSSE 268
Query: 185 -EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYAC 243
+E + + T P PPPP + LP +T+CPLC + R N +V+ SG+VFCY C
Sbjct: 269 NQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVFCYRC 328
Query: 244 IFKYVSQYKRCPVTLMPATVEQIRRLF 270
+F YV ++ CP+T P V+ + +L+
Sbjct: 329 VFNYVRSHQACPITGYPTEVQHLIKLY 355
>sp|O00623|PEX12_HUMAN Peroxisome assembly protein 12 OS=Homo sapiens GN=PEX12 PE=1 SV=1
Length = 359
Score = 101 bits (251), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 14/211 (6%)
Query: 66 KKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQELMDNS 125
K+ + A YP+++ + EG QL Y+L +S L G+ + R T Q++
Sbjct: 153 KRFYRAFLAAYPFVNMAWEGWFLVQQLRYILGKAQHHSPLLRLAGVQLGRLTVQDIQALE 212
Query: 126 SRISKIR-----SRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWW 180
+ +K +R + K + G LS + TGL VFF + ++WW
Sbjct: 213 HKPAKASMMQQPARSVSEKINSALKKAVGGVALSLS--------TGLSVGVFFLQFLDWW 264
Query: 181 YQSA-EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVF 239
Y S +E + + T P PPPP + LP +T+CPLC + R N +V+ SG+VF
Sbjct: 265 YSSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKTRVNDTVLATSGYVF 324
Query: 240 CYACIFKYVSQYKRCPVTLMPATVEQIRRLF 270
CY C+F YV ++ CP+T P V+ + +L+
Sbjct: 325 CYRCVFHYVRSHQACPITGYPTEVQHLIKLY 355
>sp|A4FUD4|PEX12_BOVIN Peroxisome assembly protein 12 OS=Bos taurus GN=PEX12 PE=2 SV=1
Length = 359
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 106/210 (50%), Gaps = 4/210 (1%)
Query: 62 TSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQEL 121
+S K+ + A YP+++ + EG QL Y+L +S L G+ + R T Q++
Sbjct: 149 SSRWKRFYRAFLAAYPFVNMAWEGWFLVQQLRYILGKAQHHSPLLRLAGVRLGRLTVQDI 208
Query: 122 MDNSSRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAAVFFFKMMEWWY 181
+ ++ + L +K++ AL + TGL VFF + +EWWY
Sbjct: 209 QALEHKPAEASMMQ---LPAGSIGEKIKSALKKAVGGVALSLSTGLSVGVFFLQFLEWWY 265
Query: 182 QSA-EERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFC 240
S +E + + T P PPPP + LP +T+CPLC + R N +V+ SG+VFC
Sbjct: 266 SSENQETIKSLTALPTPPPPVHLDYNSDSPLLPKMKTVCPLCRKNRVNDTVLATSGYVFC 325
Query: 241 YACIFKYVSQYKRCPVTLMPATVEQIRRLF 270
Y C+F YV ++ CP+T P V+ + +L+
Sbjct: 326 YRCVFHYVRSHQACPITGYPTEVQHLIKLY 355
>sp|Q19189|PEX12_CAEEL Putative peroxisome assembly protein 12 OS=Caenorhabditis elegans
GN=prx-12 PE=3 SV=1
Length = 359
Score = 91.3 bits (225), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 101/220 (45%), Gaps = 20/220 (9%)
Query: 62 TSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQEL 121
+ K QK+ +P++ + + + QL Y+L+ + +S L+ G+ + T ++L
Sbjct: 148 NGMKAKCQKMFVIIWPYIKTALKAVKSALQLAYILNRSSIHSPWLYFSGVILKHLTPEDL 207
Query: 122 ---------MDNSSRISK--IRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAA 170
+ +IS+ + R +W + L + Y
Sbjct: 208 EAFNAVPLHLQTGYQISRGTLNEHIHLRFFNRIW--RFILGLPGIVSRLFAYG------- 258
Query: 171 VFFFKMMEWWYQSAEERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPS 230
+FF + +++ Y + +++ + P PP + E L D CP+C +KR N +
Sbjct: 259 LFFVQFLDYMYNTDLAKLTKTGLDGAIPSPPHKMIISESEILSLDTNKCPICLKKRVNDT 318
Query: 231 VVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 270
+ VSG+VFCY CI +YV+ Y +CPVT PA V+ + RLF
Sbjct: 319 ALFVSGYVFCYTCINQYVNTYNKCPVTGCPANVQHLIRLF 358
>sp|Q9VPT5|PEX12_DROME Putative peroxisome assembly protein 12 OS=Drosophila melanogaster
GN=pex12 PE=2 SV=1
Length = 297
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 167 LIAAVFFFKMMEWWYQSAEERMSAPTVYPPPPPPPP--PKVAREGIPLPPDRTICPLCSQ 224
L FF + ++WWY + + R T+ P P PK ++ +P R CP+C
Sbjct: 193 LEVLAFFLQFVQWWYSNDQRRKVGGTLINPEAMPRKQLPKEVQQSLP---QRGECPVCLL 249
Query: 225 KRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271
P+ +VSG+VFC+ CI ++ ++ CPVT P +++ + R++
Sbjct: 250 SIQTPTACSVSGYVFCWKCIVSHMKEHGTCPVTHYPISLDDLVRIYE 296
>sp|Q01961|PEX12_PICPA Peroxisome assembly protein 12 OS=Komagataella pastoris GN=PEX12
PE=3 SV=1
Length = 409
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 104/256 (40%), Gaps = 42/256 (16%)
Query: 36 DDVDYFGGGGNPLFSRGGTDAETSVRTSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYL 95
D +D+ P D + S++T +Q YP L + + Q+LYL
Sbjct: 136 DKLDHLYDKLYPKLMMNNLDPKESLKTF----VQYYFLKLYPILLSVLTTIQVLLQVLYL 191
Query: 96 LDATGFYSVGLHALGIHVCRATGQELMDNSSRISKIRSRERERLLG-------PLWLKKL 148
S+ + + R + + R++K ++ LG P+ L +
Sbjct: 192 SGTFKSPSIIMWLFKMKYARLNSYDYTLDEQRVNKFLNKTSPGKLGTGNNRIRPITLTES 251
Query: 149 QGALLS-----CAYTMLDYAQTGLIAAVFFFKMMEWWYQSA-EERMSAP-TVYPPPPPPP 201
L S +L T A++F K +EWW S +M+ P + PP
Sbjct: 252 LYLLYSDLTRPLKKGLLITGGTLFPASIFLLKFLEWWNSSDFATKMNKPRNPFSDSELPP 311
Query: 202 PPKVAREGIPLPPDRTI-------------CPLCSQKRANPSVVTVSGFVFCYACIFKYV 248
P ++++ L DR I CPLC ++ NP+V+ +G+VFCY CIFK++
Sbjct: 312 PINLSKD---LLADRKIKKLLKKSQSNDGTCPLCHKQITNPAVIE-TGYVFCYTCIFKHL 367
Query: 249 SQYK-------RCPVT 257
+ + RCP+T
Sbjct: 368 TSSELDEETGGRCPIT 383
>sp|C8VCP8|PEX12_EMENI Peroxisome assembly protein 12 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=PEX12
PE=3 SV=1
Length = 489
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 114/322 (35%), Gaps = 90/322 (27%)
Query: 1 MVVLPYFKSKLHSVYNKEREARLQASLWGPTDERFDDVDYFGGGGNPLFSRGGTDAETSV 60
MV +PY K KL Y+ A QASL R++ D ++
Sbjct: 129 MVGIPYLKRKLDEGYDIH--AAPQASLIMNGGPRYNPSD-------------DLPPHPTI 173
Query: 61 RTSLTKKIQKIIFACYPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIHVCRATGQE 120
R + + YP +A+ + L YL D T + S L +G + R + +
Sbjct: 174 RQRFMHAYKWFLRNVYPSFNAAYYFSILAFNLAYLFDNTKYSSPFLWLIGTRIRRLSSAD 233
Query: 121 LMDNSSRISKI-------------RSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGL 167
I+KI RSR LLG L LL T L Y L
Sbjct: 234 ----HQAIAKILEGKPQTPNSRSARSRPGSGLLGLFSPHNLYPQLL----TSLRYF---L 282
Query: 168 IAAVFFFKMMEWWYQSAEER-------------------MSAPTVYPPPPP------PPP 202
A++F K +EWW+ S R M +P+ PP P
Sbjct: 283 PASIFALKFLEWWHASDFSRQLARKATDTLDIPAPITKGMISPSERKSRPPTKQKEDPES 342
Query: 203 PKVARE---------------------GIPLPPDR----TICPLCSQKRANPSVVTVSGF 237
PK A + +PLPP + CP+C + NP+ +G+
Sbjct: 343 PKSALKTSSPHKRIQPPISASSYLPIFTVPLPPADSDAASSCPVCLNQLTNPTACQ-TGY 401
Query: 238 VFCYACIFKYVSQYKRCPVTLM 259
V+CY CIF +++ + + M
Sbjct: 402 VYCYVCIFHWLNGEHQRQIDFM 423
>sp|Q8TFH8|PEX12_SCHPO Peroxisome assembly protein 12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pex12 PE=3 SV=2
Length = 343
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 18/110 (16%)
Query: 154 SCAYTMLDYAQTGLIAAVFFFKMMEWW----YQSAEERMS-APTVYPPPPPPPPPKVARE 208
S ++ D++ G + + ++++WW Y+S ++ A T PP P V+
Sbjct: 230 SLLTSIADHSMEGFLIII---QLIDWWQSNNYESHLKKGEVAFTELAPPKLPFEINVSTT 286
Query: 209 GIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVT 257
I C +C +K NP+V++ +GFVFCY CI ++ ++ +CPVT
Sbjct: 287 DI--------CKICGEKIKNPAVLS-TGFVFCYPCIQVWLQRHPFKCPVT 327
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271
C LC R +P+ T G VFC++CI ++ ++ + CP+ P T + L+H
Sbjct: 327 CTLCLSTRQHPTA-TPCGHVFCWSCIMEWCNEKQECPLCRTPNTHSSLVCLYH 378
>sp|Q5R7T5|RNF41_PONAB E3 ubiquitin-protein ligase NRDP1 OS=Pongo abelii GN=RNF41 PE=2
SV=1
Length = 317
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 218 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 273
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|Q8BH75|RNF41_MOUSE E3 ubiquitin-protein ligase NRDP1 OS=Mus musculus GN=Rnf41 PE=1
SV=1
Length = 317
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 218 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 273
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|Q9H4P4|RNF41_HUMAN E3 ubiquitin-protein ligase NRDP1 OS=Homo sapiens GN=RNF41 PE=1
SV=2
Length = 317
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 218 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 273
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|Q5FWL3|RNF41_XENLA E3 ubiquitin-protein ligase NRDP1 OS=Xenopus laevis GN=rnf41 PE=2
SV=1
Length = 317
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 218 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 273
ICP+CS P FC ACI ++ SQ + CPV TV +R R+ +M
Sbjct: 17 ICPICSGVLEEPVQAPHCEHAFCNACITQWFSQQQTCPVDRSVVTVAHLRPVPRIMRNM 75
>sp|O22785|PR19B_ARATH Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana
GN=PRP19B PE=1 SV=3
Length = 525
Score = 38.5 bits (88), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 266
C + + P V T SG +F I +++S Y +CPVT P T++ I
Sbjct: 3 CAISGEVPVEPVVSTKSGLLFERRLIERHISDYGKCPVTGEPLTIDDI 50
>sp|Q04370|PEX12_YEAST Peroxisome assembly protein 12 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX12 PE=1 SV=1
Length = 399
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 71/202 (35%), Gaps = 37/202 (18%)
Query: 76 YPWLHASCEGLSFTYQLLYLLDATGFYSVGLHALGIH--VCRATGQEL--------MDNS 125
YP++ + +LL+L TG S+ + I R EL MDN
Sbjct: 188 YPFIKKLLALSNLLVKLLFLTKRTGSVSLLQYLFKIEYTTVRPLSSELSGLKETKGMDNR 247
Query: 126 SRISKIRSRERERLLGPLWLKKLQGALLSCAYTMLDYAQTGLIAA-VFFFKMMEWW---- 180
R + I S + L LS L + + +F ++ +WW
Sbjct: 248 LRKTNISS-----------IFALMQGQLSIIPRFLTFMGSQFFPTFIFVLRVYQWWTTQD 296
Query: 181 ----YQSAEERMSAPTVYPPPPPPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSG 236
Q + PP +EG+ CP+C + NP V+ +G
Sbjct: 297 MTTKLQKRVNDLDEDIPRPPFSSHSDKTEDKEGVS-----EACPVCEKTVQNPCVLE-TG 350
Query: 237 FVFCYACIFKY-VSQYKRCPVT 257
+V CY C Y V+ CPVT
Sbjct: 351 YVACYPCAISYLVNNEGHCPVT 372
>sp|P84445|ICP0_EHV1V E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
V592) GN=ICP0 PE=3 SV=1
Length = 532
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 260
CP+C + +N S+ FCY CI +++ Q CP+ +P
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49
>sp|P28990|ICP0_EHV1B E3 ubiquitin-protein ligase ICP0 OS=Equine herpesvirus 1 (strain
Ab4p) GN=63 PE=1 SV=1
Length = 532
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 260
CP+C + +N S+ FCY CI +++ Q CP+ +P
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49
>sp|Q9BUZ4|TRAF4_HUMAN TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1
Length = 470
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 213 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQI 266
P R +CPLC + P V+ G FC C+ +++S+ +CP +P +I
Sbjct: 12 PKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKI 66
>sp|Q7ZW16|RNF41_DANRE E3 ubiquitin-protein ligase NRDP1 OS=Danio rerio GN=rnf41 PE=2 SV=1
Length = 318
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 218 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR---RLFHDM 273
+CP+CS P FC ACI ++ +Q + CPV T+ +R R+ +M
Sbjct: 17 LCPICSGVLEEPVRAPHCEHAFCNACITQWFAQQQICPVDRTVVTLAHLRPVPRIMRNM 75
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 230 SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 270
SV+T G FC CI KY+ + +CP+ L T +++ F
Sbjct: 42 SVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTESMLQKEF 82
>sp|Q61382|TRAF4_MOUSE TNF receptor-associated factor 4 OS=Mus musculus GN=Traf4 PE=1 SV=2
Length = 470
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 213 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQI 266
P R +CPLC + P V+ G FC C+ +++S+ +CP +P +I
Sbjct: 12 PKRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKI 66
>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
GN=At3g02290 PE=2 SV=1
Length = 231
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 212 LPPDRTICPLCSQK--RANPSVVTVSGFVFCYACIFKYVSQYKRCPV 256
L D +CP C ++ NP +VT F +CI++++ + + CPV
Sbjct: 174 LSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPV 220
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 270
C +C P V+T G FC CI +Y+++ RCP+ L +++ F
Sbjct: 32 CHICKDMLQTP-VLTQCGHTFCSLCIREYLNKESRCPLCLAELRQNMLQKEF 82
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 35.0 bits (79), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 263
C LC + R + + T+ G +FC+ CI ++ + ++CPV P ++
Sbjct: 322 CTLCLEVRTH-TTATICGHLFCWHCITEWCNNKEQCPVCRCPISI 365
>sp|Q6NZ21|RNFT1_DANRE RING finger and transmembrane domain-containing protein 1 OS=Danio
rerio GN=rnft1 PE=2 SV=2
Length = 419
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 199 PPPPPKVAREGIPLPPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 256
P P ++ G ICP+C P V+ V +FC CI ++++Q + CP+
Sbjct: 346 PASPAQIREAG-------DICPICQADFKQPRVL-VCQHIFCEECIAQWLNQERTCPL 395
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 34.7 bits (78), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 256
CP+C++ P T G +CY C+ ++ + K CP
Sbjct: 85 CPICTEALQRP-FTTHCGHTYCYECLLNWLKESKSCPT 121
>sp|Q6ZMN7|PZRN4_HUMAN PDZ domain-containing RING finger protein 4 OS=Homo sapiens
GN=PDZRN4 PE=1 SV=3
Length = 1036
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 219 CPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 260
C LC Q P + T G VFC +C+ + + +RCP+ P
Sbjct: 18 CKLCGQVLEEP-LCTPCGHVFCASCLLPWAVRRRRCPLQCQP 58
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 218 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 256
+C LC ++R +P+ T G +FC+ CI + S CP+
Sbjct: 272 LCTLCLEERRHPTA-TPCGHLFCWECITAWCSSKAECPL 309
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 218 ICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 256
+C LC ++R +P+ T G +FC+ CI + S CP+
Sbjct: 272 LCTLCLEERRHPTA-TPCGHLFCWECITAWCSSKAECPL 309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,991,187
Number of Sequences: 539616
Number of extensions: 4865855
Number of successful extensions: 60164
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 202
Number of HSP's that attempted gapping in prelim test: 48675
Number of HSP's gapped (non-prelim): 7506
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)