Query 024073
Match_columns 273
No_of_seqs 191 out of 694
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:45:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bay_A PRE-mRNA splicing facto 99.5 1.5E-14 5.1E-19 103.0 3.9 56 216-271 3-58 (61)
2 3ng2_A RNF4, snurf, ring finge 99.5 1.3E-14 4.5E-19 104.5 3.0 57 214-271 8-71 (71)
3 2kr4_A Ubiquitin conjugation f 99.5 5.4E-14 1.9E-18 106.2 6.0 54 215-269 13-66 (85)
4 2xeu_A Ring finger protein 4; 99.5 2.5E-14 8.4E-19 100.8 3.2 56 215-271 2-64 (64)
5 1t1h_A Gspef-atpub14, armadill 99.4 8.1E-14 2.8E-18 102.5 5.6 53 215-268 7-60 (78)
6 2kre_A Ubiquitin conjugation f 99.4 1.2E-13 4.1E-18 107.6 4.5 54 215-269 28-81 (100)
7 2djb_A Polycomb group ring fin 99.4 2.3E-13 7.9E-18 98.9 5.4 55 215-269 14-68 (72)
8 1wgm_A Ubiquitin conjugation f 99.4 3.9E-13 1.3E-17 104.3 6.0 54 215-269 21-75 (98)
9 2ecy_A TNF receptor-associated 99.4 2.6E-13 9E-18 96.9 4.3 52 214-266 13-65 (66)
10 2d8t_A Dactylidin, ring finger 99.4 8.8E-14 3E-18 100.9 1.8 54 215-269 14-67 (71)
11 2ysl_A Tripartite motif-contai 99.4 4.1E-13 1.4E-17 97.2 5.0 53 214-267 18-73 (73)
12 1g25_A CDK-activating kinase a 99.3 8E-13 2.7E-17 94.0 4.1 58 215-272 2-64 (65)
13 2ct2_A Tripartite motif protei 99.3 1.2E-12 4.2E-17 97.8 5.1 57 214-271 13-76 (88)
14 2ecw_A Tripartite motif-contai 99.3 1.9E-12 6.7E-17 95.7 5.9 55 215-270 18-78 (85)
15 2ecv_A Tripartite motif-contai 99.3 4E-12 1.4E-16 94.0 7.0 55 215-270 18-78 (85)
16 2csy_A Zinc finger protein 183 99.3 2.6E-12 8.7E-17 95.3 5.9 47 215-262 14-60 (81)
17 3lrq_A E3 ubiquitin-protein li 99.3 1.3E-12 4.5E-17 101.1 4.3 56 215-270 21-77 (100)
18 2yur_A Retinoblastoma-binding 99.3 2.3E-12 7.8E-17 94.2 5.0 48 215-262 14-63 (74)
19 2egp_A Tripartite motif-contai 99.3 7.5E-13 2.6E-17 97.2 1.9 54 214-268 10-70 (79)
20 2yu4_A E3 SUMO-protein ligase 99.3 1.5E-12 5.2E-17 99.8 3.6 55 214-268 5-68 (94)
21 2y43_A E3 ubiquitin-protein li 99.3 2.1E-12 7.1E-17 99.3 4.3 54 215-268 21-74 (99)
22 3ztg_A E3 ubiquitin-protein li 99.3 4E-12 1.4E-16 96.3 5.5 54 214-267 11-67 (92)
23 2ea6_A Ring finger protein 4; 99.3 2.5E-12 8.7E-17 91.7 4.0 48 215-263 14-68 (69)
24 1chc_A Equine herpes virus-1 r 99.3 6.4E-12 2.2E-16 89.8 5.9 48 215-262 4-51 (68)
25 2c2l_A CHIP, carboxy terminus 99.3 3.2E-12 1.1E-16 114.0 5.0 53 215-268 207-260 (281)
26 2ect_A Ring finger protein 126 99.2 4.1E-12 1.4E-16 93.3 4.3 53 215-268 14-69 (78)
27 4ap4_A E3 ubiquitin ligase RNF 99.2 2.8E-12 9.5E-17 102.3 3.5 57 215-272 6-69 (133)
28 2ysj_A Tripartite motif-contai 99.2 7.1E-12 2.4E-16 88.4 5.1 43 214-257 18-63 (63)
29 1jm7_A BRCA1, breast cancer ty 99.2 6.6E-12 2.2E-16 98.0 5.2 53 216-269 21-76 (112)
30 2f42_A STIP1 homology and U-bo 99.2 3.7E-12 1.3E-16 109.0 4.0 54 215-269 105-159 (179)
31 2ckl_A Polycomb group ring fin 99.2 5.6E-12 1.9E-16 98.4 4.1 50 215-264 14-63 (108)
32 2ecm_A Ring finger and CHY zin 99.2 9.7E-12 3.3E-16 85.1 4.7 47 215-262 4-54 (55)
33 4ayc_A E3 ubiquitin-protein li 99.2 4.4E-12 1.5E-16 103.5 3.5 47 216-263 53-99 (138)
34 1iym_A EL5; ring-H2 finger, ub 99.2 9.6E-12 3.3E-16 85.2 4.6 48 215-262 4-54 (55)
35 2ecn_A Ring finger protein 141 99.2 3.4E-12 1.2E-16 91.8 2.1 55 214-270 13-67 (70)
36 3hct_A TNF receptor-associated 99.2 6.4E-12 2.2E-16 99.8 3.5 54 214-268 16-70 (118)
37 2ecj_A Tripartite motif-contai 99.2 1.6E-11 5.5E-16 84.8 5.1 43 214-257 13-58 (58)
38 3fl2_A E3 ubiquitin-protein li 99.2 1.1E-11 3.6E-16 99.2 4.2 51 215-266 51-103 (124)
39 2vje_A E3 ubiquitin-protein li 99.2 1.6E-11 5.4E-16 87.8 4.0 54 215-271 7-63 (64)
40 4ap4_A E3 ubiquitin ligase RNF 99.2 8.3E-12 2.8E-16 99.5 2.8 56 215-271 71-133 (133)
41 1x4j_A Ring finger protein 38; 99.2 1.2E-11 4.2E-16 90.3 3.2 49 215-264 22-73 (75)
42 2ep4_A Ring finger protein 24; 99.1 3.8E-11 1.3E-15 87.2 5.4 47 215-262 14-63 (74)
43 2kiz_A E3 ubiquitin-protein li 99.1 4.8E-11 1.6E-15 85.5 5.8 48 215-263 13-63 (69)
44 1rmd_A RAG1; V(D)J recombinati 99.1 2.1E-11 7.1E-16 96.3 3.9 54 215-269 22-76 (116)
45 2ckl_B Ubiquitin ligase protei 99.1 2.6E-11 8.8E-16 101.5 4.5 49 215-263 53-102 (165)
46 1z6u_A NP95-like ring finger p 99.1 2.9E-11 1E-15 100.4 4.3 49 215-264 77-126 (150)
47 2vje_B MDM4 protein; proto-onc 99.1 2.9E-11 9.9E-16 86.1 3.3 54 215-271 6-62 (63)
48 1jm7_B BARD1, BRCA1-associated 99.1 2.2E-11 7.6E-16 96.5 2.5 52 215-268 21-72 (117)
49 2ecl_A Ring-box protein 2; RNF 99.1 4E-11 1.4E-15 89.3 3.7 53 215-267 14-80 (81)
50 2l0b_A E3 ubiquitin-protein li 99.1 3E-11 1E-15 91.8 2.8 48 215-263 39-89 (91)
51 3l11_A E3 ubiquitin-protein li 99.0 5.6E-11 1.9E-15 93.7 1.2 47 215-262 14-61 (115)
52 3knv_A TNF receptor-associated 99.0 4.5E-11 1.5E-15 98.3 0.6 49 214-263 29-78 (141)
53 1bor_A Transcription factor PM 99.0 1.9E-10 6.3E-15 79.8 3.3 46 215-264 5-50 (56)
54 1v87_A Deltex protein 2; ring- 99.0 1.8E-10 6.3E-15 90.3 3.2 46 216-262 25-93 (114)
55 2y1n_A E3 ubiquitin-protein li 99.0 2.2E-10 7.4E-15 108.6 3.9 53 216-269 332-385 (389)
56 1e4u_A Transcriptional repress 99.0 5.3E-10 1.8E-14 83.1 5.2 54 214-267 9-66 (78)
57 3hcs_A TNF receptor-associated 99.0 2.3E-10 8E-15 96.0 3.5 54 214-268 16-70 (170)
58 3htk_C E3 SUMO-protein ligase 99.0 3.8E-10 1.3E-14 101.6 4.9 54 215-268 180-237 (267)
59 4ic3_A E3 ubiquitin-protein li 98.9 7.3E-10 2.5E-14 81.0 2.7 49 216-271 24-73 (74)
60 2ecg_A Baculoviral IAP repeat- 98.8 2E-09 6.8E-14 78.7 4.4 49 216-271 25-74 (75)
61 3dpl_R Ring-box protein 1; ubi 98.8 1.7E-09 5.8E-14 84.9 3.9 50 215-264 36-102 (106)
62 2ea5_A Cell growth regulator w 98.8 9E-09 3.1E-13 74.3 6.3 51 215-272 14-65 (68)
63 2yho_A E3 ubiquitin-protein li 98.7 7.5E-09 2.6E-13 76.8 3.1 50 216-272 18-68 (79)
64 4a0k_B E3 ubiquitin-protein li 98.7 3.2E-09 1.1E-13 84.8 0.3 50 216-265 48-114 (117)
65 1wim_A KIAA0161 protein; ring 98.5 1.3E-08 4.6E-13 77.3 0.8 55 215-269 4-72 (94)
66 3t6p_A Baculoviral IAP repeat- 98.5 3.7E-08 1.3E-12 92.1 2.4 50 215-271 294-344 (345)
67 3vk6_A E3 ubiquitin-protein li 98.3 2.1E-07 7.1E-12 71.9 3.2 44 218-262 3-48 (101)
68 2d8s_A Cellular modulator of i 98.3 4.1E-07 1.4E-11 67.7 4.5 51 214-265 13-72 (80)
69 2ct0_A Non-SMC element 1 homol 98.2 2.3E-06 7.8E-11 62.9 5.1 48 215-262 14-63 (74)
70 3m62_A Ubiquitin conjugation f 97.5 4.3E-05 1.5E-09 79.4 3.8 54 214-268 889-943 (968)
71 3k1l_B Fancl; UBC, ring, RWD, 97.2 0.00011 3.7E-09 68.6 2.1 48 215-262 307-372 (381)
72 1vyx_A ORF K3, K3RING; zinc-bi 96.8 0.00091 3.1E-08 46.7 3.5 48 215-263 5-59 (60)
73 3nw0_A Non-structural maintena 96.5 0.0017 5.7E-08 57.5 4.1 48 216-263 180-229 (238)
74 2cs3_A Protein C14ORF4, MY039 94.2 0.11 3.6E-06 38.5 5.8 35 216-250 15-52 (93)
75 3i2d_A E3 SUMO-protein ligase 93.8 0.044 1.5E-06 51.4 4.1 52 216-267 249-304 (371)
76 2jun_A Midline-1; B-BOX, TRIM, 93.3 0.043 1.5E-06 41.2 2.6 31 215-246 2-35 (101)
77 4fo9_A E3 SUMO-protein ligase 93.2 0.065 2.2E-06 50.1 4.1 51 216-267 215-270 (360)
78 2ko5_A Ring finger protein Z; 89.9 0.12 4E-06 39.3 1.6 45 216-262 28-72 (99)
79 1wff_A Riken cDNA 2810002D23 p 89.7 0.34 1.2E-05 36.0 4.0 50 215-268 24-75 (85)
80 2fiy_A Protein FDHE homolog; F 89.1 0.048 1.6E-06 50.0 -1.3 46 215-260 181-231 (309)
81 1wd2_A Ariadne-1 protein homol 86.8 0.26 9E-06 34.1 1.7 36 215-250 5-47 (60)
82 3vth_A Hydrogenase maturation 85.7 0.19 6.6E-06 51.2 0.7 51 211-261 106-193 (761)
83 1m3v_A FLIN4, fusion of the LI 85.4 0.55 1.9E-05 36.4 3.1 51 216-266 32-84 (122)
84 1weo_A Cellulose synthase, cat 85.0 1.1 3.9E-05 33.5 4.4 47 216-262 16-69 (93)
85 2jne_A Hypothetical protein YF 84.9 0.062 2.1E-06 41.0 -2.6 41 216-262 32-72 (101)
86 2ct7_A Ring finger protein 31; 82.6 0.42 1.4E-05 35.2 1.2 34 218-251 27-65 (86)
87 2gmg_A Hypothetical protein PF 82.4 0.26 9E-06 38.1 0.0 29 227-260 65-93 (105)
88 2jmo_A Parkin; IBR, E3 ligase, 81.3 0.69 2.4E-05 33.6 2.0 34 216-249 25-70 (80)
89 3pwf_A Rubrerythrin; non heme 79.9 0.53 1.8E-05 39.2 1.0 21 66-86 27-47 (170)
90 4g9i_A Hydrogenase maturation 79.8 0.51 1.8E-05 48.2 1.1 51 211-261 101-188 (772)
91 2jrp_A Putative cytoplasmic pr 79.5 0.21 7.3E-06 36.8 -1.3 41 217-263 3-43 (81)
92 3ttc_A HYPF, transcriptional r 78.1 0.54 1.8E-05 47.2 0.7 49 213-261 14-99 (657)
93 1wfh_A Zinc finger (AN1-like) 75.9 2.3 8E-05 29.8 3.3 48 215-266 14-62 (64)
94 2xjy_A Rhombotin-2; oncoprotei 75.5 2 6.8E-05 33.2 3.2 49 215-264 28-79 (131)
95 1joc_A EEA1, early endosomal a 75.4 1.4 4.7E-05 34.8 2.2 32 216-247 69-103 (125)
96 1wg2_A Zinc finger (AN1-like) 74.8 2.6 8.7E-05 29.6 3.2 48 215-266 14-62 (64)
97 1lko_A Rubrerythrin all-iron(I 74.0 0.89 3E-05 38.4 0.8 9 252-260 172-180 (191)
98 1wfk_A Zinc finger, FYVE domai 73.4 2.2 7.5E-05 31.6 2.8 34 214-247 7-43 (88)
99 6rxn_A Rubredoxin; electron tr 73.2 0.92 3.2E-05 29.8 0.6 9 252-260 31-39 (46)
100 3zyq_A Hepatocyte growth facto 73.2 2.4 8.2E-05 36.6 3.4 33 215-247 163-198 (226)
101 1x4w_A Hypothetical protein FL 73.2 1.7 5.9E-05 30.8 2.0 46 215-264 14-63 (67)
102 1x4u_A Zinc finger, FYVE domai 72.1 2.3 8E-05 30.9 2.7 31 216-246 14-47 (84)
103 2yw8_A RUN and FYVE domain-con 71.6 2.2 7.6E-05 30.9 2.4 33 215-247 18-53 (82)
104 1z60_A TFIIH basal transcripti 71.5 1.7 5.7E-05 30.1 1.6 41 217-258 16-59 (59)
105 2xqn_T Testin, TESS; metal-bin 71.4 4.1 0.00014 31.2 4.1 48 215-264 29-76 (126)
106 2cup_A Skeletal muscle LIM-pro 71.2 4.3 0.00015 29.7 4.1 53 215-269 32-85 (101)
107 1z2q_A LM5-1; membrane protein 71.1 2.4 8.3E-05 30.9 2.6 33 215-247 20-55 (84)
108 1yuz_A Nigerythrin; rubrythrin 70.9 1.3 4.6E-05 37.7 1.2 10 252-261 187-196 (202)
109 1y02_A CARP2, FYVE-ring finger 70.8 2.2 7.5E-05 33.6 2.4 42 216-257 19-63 (120)
110 3mjh_B Early endosome antigen 70.6 0.56 1.9E-05 28.9 -0.9 19 215-233 4-22 (34)
111 1dvp_A HRS, hepatocyte growth 70.1 1.9 6.6E-05 36.9 2.1 33 215-247 160-195 (220)
112 3t7l_A Zinc finger FYVE domain 69.6 2.4 8.1E-05 31.4 2.2 33 216-248 20-55 (90)
113 1rut_X Flinc4, fusion protein 69.3 1.4 4.9E-05 36.5 1.1 50 215-265 31-83 (188)
114 1wfp_A Zinc finger (AN1-like) 68.9 8 0.00027 27.9 4.8 48 215-266 24-72 (74)
115 1vfy_A Phosphatidylinositol-3- 68.9 2.9 9.9E-05 29.6 2.5 30 217-246 12-44 (73)
116 1x64_A Alpha-actinin-2 associa 67.5 21 0.00072 25.4 7.1 41 215-264 24-64 (89)
117 4rxn_A Rubredoxin; electron tr 65.9 3.3 0.00011 28.0 2.1 11 250-260 35-45 (54)
118 2rgt_A Fusion of LIM/homeobox 65.4 7.8 0.00027 31.3 4.8 49 215-266 32-80 (169)
119 2jtn_A LIM domain-binding prot 61.4 7.9 0.00027 31.7 4.2 48 215-265 86-133 (182)
120 1b8t_A Protein (CRP1); LIM dom 59.7 9 0.00031 31.6 4.2 35 215-249 33-67 (192)
121 1s24_A Rubredoxin 2; electron 59.4 2 6.8E-05 32.0 0.1 11 250-260 67-77 (87)
122 1nui_A DNA primase/helicase; z 58.0 2.8 9.6E-05 36.3 0.8 26 216-244 14-40 (255)
123 3mpx_A FYVE, rhogef and PH dom 57.3 2.2 7.6E-05 39.6 0.0 33 216-248 375-410 (434)
124 1e8j_A Rubredoxin; iron-sulfur 57.0 10 0.00035 25.2 3.3 9 252-260 37-45 (52)
125 2kn9_A Rubredoxin; metalloprot 56.5 2.3 7.7E-05 31.3 -0.1 11 250-260 59-69 (81)
126 2v3b_B Rubredoxin 2, rubredoxi 54.6 3 0.0001 28.3 0.3 11 250-260 35-45 (55)
127 1x61_A Thyroid receptor intera 54.5 13 0.00043 25.3 3.6 35 215-249 32-66 (72)
128 1pft_A TFIIB, PFTFIIBN; N-term 54.0 7.1 0.00024 25.3 2.1 24 216-239 5-34 (50)
129 2uzg_A Ubiquitin carboxyl-term 53.7 13 0.00044 27.8 3.8 35 216-250 25-65 (97)
130 2pk7_A Uncharacterized protein 53.7 4.8 0.00017 28.5 1.3 13 215-227 7-19 (69)
131 1iml_A CRIP, cysteine rich int 52.2 13 0.00044 25.6 3.4 45 215-261 26-71 (76)
132 1wfl_A Zinc finger protein 216 50.5 19 0.00064 25.9 4.0 44 215-262 24-68 (74)
133 1l8d_A DNA double-strand break 50.5 4.1 0.00014 30.8 0.6 13 251-263 47-59 (112)
134 1dx8_A Rubredoxin; electron tr 49.3 3.6 0.00012 29.3 0.0 11 250-260 39-49 (70)
135 2jr6_A UPF0434 protein NMA0874 48.4 6.2 0.00021 27.8 1.2 14 215-228 7-20 (68)
136 2hf1_A Tetraacyldisaccharide-1 46.6 5.4 0.00018 28.2 0.6 14 215-228 7-20 (68)
137 1yk4_A Rubredoxin, RD; electro 46.3 3.9 0.00013 27.3 -0.1 11 250-260 34-44 (52)
138 3v2d_5 50S ribosomal protein L 45.9 6 0.00021 27.3 0.7 22 216-237 30-51 (60)
139 1x4l_A Skeletal muscle LIM-pro 45.4 11 0.00038 25.6 2.1 31 215-245 34-64 (72)
140 2zjr_Z 50S ribosomal protein L 45.3 7.6 0.00026 26.7 1.2 22 216-237 30-51 (60)
141 1b8t_A Protein (CRP1); LIM dom 44.6 17 0.00057 30.0 3.5 45 215-261 141-185 (192)
142 2co8_A NEDD9 interacting prote 44.5 43 0.0015 23.4 5.3 41 216-264 15-55 (82)
143 2pv0_B DNA (cytosine-5)-methyl 44.2 15 0.0005 34.5 3.3 43 216-259 93-147 (386)
144 2lcq_A Putative toxin VAPC6; P 43.8 5.5 0.00019 32.3 0.3 10 252-261 149-158 (165)
145 2ee8_A Protein ODD-skipped-rel 43.0 49 0.0017 23.2 5.5 48 215-262 16-84 (106)
146 3c5k_A HD6, histone deacetylas 42.8 8.9 0.00031 29.4 1.4 34 216-250 24-61 (109)
147 2jny_A Uncharacterized BCR; st 42.2 12 0.0004 26.3 1.8 14 215-228 9-22 (67)
148 2cur_A Skeletal muscle LIM-pro 42.1 19 0.00063 24.2 2.9 33 216-248 31-63 (69)
149 2cor_A Pinch protein; LIM doma 41.6 25 0.00085 24.5 3.6 29 215-244 40-68 (79)
150 2d8x_A Protein pinch; LIM doma 40.8 18 0.00063 24.3 2.7 32 216-247 31-62 (70)
151 1x62_A C-terminal LIM domain p 40.6 28 0.00095 24.1 3.7 38 216-262 15-52 (79)
152 2g45_A Ubiquitin carboxyl-term 39.1 21 0.0007 28.2 3.0 25 215-240 33-57 (129)
153 1x4v_A Hypothetical protein LO 38.7 23 0.00078 24.6 2.8 45 215-262 11-57 (63)
154 1zfo_A LAsp-1; LIM domain, zin 38.7 21 0.00073 20.8 2.3 27 217-243 4-30 (31)
155 2dar_A PDZ and LIM domain prot 38.5 24 0.00081 25.2 3.1 38 216-262 25-62 (90)
156 2iyb_E Testin, TESS, TES; LIM 38.3 16 0.00056 24.4 2.1 30 215-244 31-61 (65)
157 2js4_A UPF0434 protein BB2007; 38.3 9.1 0.00031 27.1 0.7 13 215-227 7-19 (70)
158 1nyp_A Pinch protein; LIM doma 37.8 18 0.00063 24.0 2.3 30 216-245 31-60 (66)
159 2d8z_A Four and A half LIM dom 37.7 21 0.00073 23.9 2.6 33 215-247 30-62 (70)
160 2lri_C Autoimmune regulator; Z 37.5 44 0.0015 23.0 4.2 47 213-260 9-59 (66)
161 1x68_A FHL5 protein; four-and- 36.9 13 0.00046 25.6 1.5 28 217-244 36-63 (76)
162 2vrw_B P95VAV, VAV1, proto-onc 36.4 16 0.00056 33.4 2.4 40 215-258 356-399 (406)
163 1wyh_A SLIM 2, skeletal muscle 35.8 20 0.00068 24.2 2.2 33 215-247 32-64 (72)
164 1wfe_A Riken cDNA 2310008M20 p 35.7 24 0.00082 25.9 2.7 39 215-256 24-64 (86)
165 2kpi_A Uncharacterized protein 35.4 15 0.00052 24.7 1.4 13 215-227 9-21 (56)
166 2gvi_A Conserved hypothetical 35.0 11 0.00039 31.9 0.9 30 215-245 171-201 (204)
167 3vhs_A ATPase wrnip1; zinc fin 34.0 7.5 0.00026 22.3 -0.3 7 254-260 9-15 (29)
168 2lv2_A Insulinoma-associated p 34.0 15 0.00051 26.4 1.3 36 215-262 27-67 (85)
169 1dl6_A Transcription factor II 33.5 22 0.00075 24.0 2.0 9 216-224 11-19 (58)
170 2egq_A FHL1 protein; LIM domai 33.2 25 0.00086 24.0 2.4 27 217-243 47-73 (77)
171 1x64_A Alpha-actinin-2 associa 32.7 31 0.0011 24.4 2.9 33 216-248 51-83 (89)
172 4cpa_I Metallocarboxypeptidase 32.7 16 0.00054 22.5 1.0 23 219-243 5-27 (38)
173 2d8y_A Eplin protein; LIM doma 32.3 35 0.0012 24.3 3.1 33 216-248 42-74 (91)
174 1wig_A KIAA1808 protein; LIM d 32.3 31 0.0011 23.6 2.8 35 215-249 30-65 (73)
175 1x4k_A Skeletal muscle LIM-pro 31.9 27 0.00092 23.5 2.4 31 216-246 33-63 (72)
176 2cu8_A Cysteine-rich protein 2 30.7 27 0.00093 23.9 2.2 31 216-246 36-67 (76)
177 2cuq_A Four and A half LIM dom 30.2 32 0.0011 23.7 2.6 33 215-247 40-72 (80)
178 1x62_A C-terminal LIM domain p 29.9 18 0.00061 25.2 1.1 36 215-250 40-75 (79)
179 3a1b_A DNA (cytosine-5)-methyl 29.8 29 0.00099 28.5 2.5 43 216-259 79-133 (159)
180 1x63_A Skeletal muscle LIM-pro 28.9 36 0.0012 23.5 2.7 31 216-246 43-73 (82)
181 3j20_Y 30S ribosomal protein S 28.6 22 0.00075 23.4 1.3 11 215-225 18-28 (50)
182 4ayb_P DNA-directed RNA polyme 28.5 52 0.0018 21.5 3.1 10 252-261 24-33 (48)
183 2zet_C Melanophilin; complex, 28.1 25 0.00086 28.5 1.9 30 216-245 68-101 (153)
184 1zbd_B Rabphilin-3A; G protein 28.0 25 0.00086 27.8 1.8 30 216-245 55-88 (134)
185 3ihp_A Ubiquitin carboxyl-term 27.8 33 0.0011 35.1 3.1 36 215-251 214-259 (854)
186 1x3h_A Leupaxin; paxillin fami 27.8 39 0.0013 23.2 2.7 33 215-247 40-72 (80)
187 1vq8_Z 50S ribosomal protein L 27.2 11 0.00037 27.6 -0.4 14 216-229 27-41 (83)
188 3f6q_B LIM and senescent cell 27.0 24 0.00083 23.5 1.4 11 217-227 12-22 (72)
189 2k0a_A PRE-mRNA-splicing facto 26.6 27 0.00092 26.7 1.6 19 251-269 29-47 (109)
190 2ehe_A Four and A half LIM dom 26.1 26 0.00087 24.4 1.4 29 216-244 43-71 (82)
191 2adr_A ADR1; transcription reg 26.0 26 0.00087 22.0 1.3 34 217-262 3-41 (60)
192 1g47_A Pinch protein; LIM doma 25.9 32 0.0011 23.4 1.9 30 216-245 39-68 (77)
193 1j2o_A FLIN2, fusion of rhombo 25.3 98 0.0033 22.9 4.7 38 215-252 29-68 (114)
194 2k5c_A Uncharacterized protein 25.2 16 0.00054 26.9 0.1 12 216-227 8-19 (95)
195 2l3k_A Rhombotin-2, linker, LI 24.9 81 0.0028 23.7 4.2 36 215-250 35-71 (123)
196 2gqj_A Zinc finger protein KIA 24.7 40 0.0014 23.9 2.3 42 215-262 23-65 (98)
197 1wys_A Riken cDNA 2310008M20 p 24.7 64 0.0022 23.0 3.3 44 213-259 11-56 (75)
198 2a20_A Regulating synaptic mem 24.5 49 0.0017 22.7 2.5 15 215-229 8-23 (62)
199 3o36_A Transcription intermedi 24.5 31 0.0011 28.2 1.8 46 215-261 3-52 (184)
200 2lce_A B-cell lymphoma 6 prote 24.2 26 0.0009 23.2 1.1 40 215-262 16-56 (74)
201 2kdx_A HYPA, hydrogenase/ureas 23.8 28 0.00094 26.6 1.3 10 251-260 89-99 (119)
202 3avr_A Lysine-specific demethy 23.5 9.9 0.00034 37.1 -1.6 51 215-271 457-518 (531)
203 2eps_A POZ-, at HOOK-, and zin 23.4 37 0.0013 21.1 1.7 35 216-262 12-52 (54)
204 2m0e_A Zinc finger and BTB dom 22.8 39 0.0013 17.0 1.5 16 217-232 3-18 (29)
205 2i50_A Ubiquitin carboxyl-term 22.7 18 0.00062 28.4 0.0 34 217-250 29-80 (126)
206 2ket_A Cathelicidin-6; antimic 22.3 32 0.0011 19.3 1.0 19 62-80 4-22 (27)
207 2jvx_A NF-kappa-B essential mo 22.2 19 0.00064 21.0 0.0 16 216-231 3-18 (28)
208 4ge6_A Tyrosine-protein phosph 21.9 25 0.00087 31.4 0.8 20 234-253 286-305 (314)
209 3d00_A Tungsten formylmethanof 21.8 20 0.00067 30.1 0.1 24 215-244 162-185 (191)
210 2ctu_A Zinc finger protein 483 21.7 14 0.00047 24.1 -0.8 32 216-261 18-49 (73)
211 2l4z_A DNA endonuclease RBBP8, 21.5 48 0.0016 25.3 2.3 39 216-262 61-99 (123)
212 2ida_A Hypothetical protein; z 21.4 27 0.00093 26.5 0.8 28 216-243 18-48 (102)
213 1wil_A KIAA1045 protein; ring 21.4 1.2E+02 0.004 22.4 4.1 33 215-247 14-47 (89)
214 2dmd_A Zinc finger protein 64, 21.0 58 0.002 22.3 2.5 48 215-262 7-75 (96)
215 2cot_A Zinc finger protein 435 20.9 47 0.0016 22.0 1.9 36 215-262 17-57 (77)
216 2k4x_A 30S ribosomal protein S 20.8 53 0.0018 21.9 2.1 12 215-226 17-28 (55)
217 2xjy_A Rhombotin-2; oncoprotei 20.8 47 0.0016 25.1 2.1 10 218-227 68-77 (131)
218 4gut_A Lysine-specific histone 20.5 54 0.0019 33.1 3.0 35 216-251 13-57 (776)
219 1v6g_A Actin binding LIM prote 20.4 82 0.0028 21.6 3.2 37 217-262 16-52 (81)
220 2l4z_A DNA endonuclease RBBP8, 20.3 59 0.002 24.8 2.6 30 216-246 88-120 (123)
221 1x6e_A Zinc finger protein 24; 20.1 23 0.00079 23.4 0.1 40 215-262 13-53 (72)
No 1
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.48 E-value=1.5e-14 Score=103.03 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeeeCcc
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 271 (273)
...||||++.++||++++.|||+||..||.+|++++++||+|+++++.++|+++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 47899999999999888349999999999999999999999999999999999865
No 2
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.47 E-value=1.3e-14 Score=104.54 Aligned_cols=57 Identities=18% Similarity=0.483 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCCCCc-------ccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeeeCcc
Q 024073 214 PDRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np-------~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 271 (273)
.+...||||.+.+.+| .+++ |||+||+.||.+|++++.+||+|+.+++.+++++||.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhheeeccC
Confidence 3578999999999988 5665 9999999999999999999999999999999999984
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.46 E-value=5.4e-14 Score=106.19 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeeeC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 269 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 269 (273)
+...||||++.++||++++ |||+||..||.+|++++++||+|+.+++.++|+.-
T Consensus 13 ~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn 66 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPV 66 (85)
T ss_dssp TTTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEEC
T ss_pred hheECcccCchhcCCeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchH
Confidence 6899999999999999988 99999999999999999999999999998888753
No 4
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.45 E-value=2.5e-14 Score=100.81 Aligned_cols=56 Identities=18% Similarity=0.478 Sum_probs=50.9
Q ss_pred CCCCCCCCCCCCCCc-------ccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeeeCcc
Q 024073 215 DRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271 (273)
Q Consensus 215 ~~~~CpiC~~~~~np-------~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 271 (273)
+...||||++.+.+| .+++ |||+||..||.+|++++.+||+|+.+++.+++++||.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 456899999999887 5555 9999999999999999999999999999999999984
No 5
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.44 E-value=8.1e-14 Score=102.53 Aligned_cols=53 Identities=19% Similarity=0.383 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhc-CCCCCCCCCCCCcCCeee
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIRR 268 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~~~~l~r 268 (273)
+...||||++.+.+|.+++ |||+||..||.+|++. +.+||+|+.+++.++++.
T Consensus 7 ~~~~C~IC~~~~~~Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~ 60 (78)
T 1t1h_A 7 EYFRCPISLELMKDPVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP 60 (78)
T ss_dssp SSSSCTTTSCCCSSEEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred ccCCCCCccccccCCEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCcc
Confidence 6789999999999999887 9999999999999987 789999999998887764
No 6
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.41 E-value=1.2e-13 Score=107.55 Aligned_cols=54 Identities=17% Similarity=0.181 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeeeC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 269 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 269 (273)
+...||||++.++||++++ |||+||..||.+|+.++.+||+|+.+++.++|+.-
T Consensus 28 ~~~~CpI~~~~m~dPV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn 81 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV 81 (100)
T ss_dssp TTTBCTTTCSBCSSEEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred HhhCCcCccCcccCCeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence 6899999999999999998 99999999999999999999999999998888753
No 7
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.3e-13 Score=98.89 Aligned_cols=55 Identities=20% Similarity=0.383 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeeeC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 269 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 269 (273)
+...||||++.+.+|.++..|||+||+.||.+|++.+.+||+|+.+++.++++..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccccc
Confidence 5679999999999998874599999999999999999999999999998887654
No 8
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.38 E-value=3.9e-13 Score=104.30 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCCCCcccccccc-cccchhhHHHHHhcCCCCCCCCCCCCcCCeeeC
Q 024073 215 DRTICPLCSQKRANPSVVTVSG-FVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 269 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G-~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 269 (273)
+...||||++.++||++++ || |+||..||.+|+.++..||+|+.+++.++|+.-
T Consensus 21 ~~~~CpI~~~~m~dPV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn 75 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN 75 (98)
T ss_dssp TTTBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred HhcCCcCccccccCCeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence 6889999999999999987 99 999999999999999999999999998888753
No 9
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.6e-13 Score=96.85 Aligned_cols=52 Identities=19% Similarity=0.482 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHHh-cCCCCCCCCCCCCcCCe
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-QYKRCPVTLMPATVEQI 266 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~-~~~~CPv~~~~~~~~~l 266 (273)
.+...||||++.+++|.+++ |||+||+.||.+|++ .+.+||+|+.+++.++|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCEECTTTCCEESSCCCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CcCCCCCCCChHhcCeeECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 35788999999999999886 999999999999994 56799999999988775
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=8.8e-14 Score=100.85 Aligned_cols=54 Identities=22% Similarity=0.415 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeeeC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRL 269 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri 269 (273)
+...|+||++.+.+|++++ |||+||+.||.+|+..+.+||+|+.++..+++++-
T Consensus 14 ~~~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDFLDSG 67 (71)
T ss_dssp SCCBCSSSSSBCSSEEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHHSCS
T ss_pred CCCCCccCCcccCCCEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhhccCC
Confidence 5678999999999999887 99999999999999999999999999988777653
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=4.1e-13 Score=97.25 Aligned_cols=53 Identities=26% Similarity=0.678 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHHh---cCCCCCCCCCCCCcCCee
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS---QYKRCPVTLMPATVEQIR 267 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~---~~~~CPv~~~~~~~~~l~ 267 (273)
.+...||||.+.+.+|.+++ |||+||+.||.+|++ .+.+||+|+.+++.++++
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~r 73 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAIR 73 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccCC
Confidence 35789999999999999986 999999999999997 456999999999988874
No 12
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.32 E-value=8e-13 Score=94.03 Aligned_cols=58 Identities=29% Similarity=0.573 Sum_probs=48.2
Q ss_pred CCCCCCCCCC-CCCCcc---cccccccccchhhHHHHHhc-CCCCCCCCCCCCcCCeeeCccC
Q 024073 215 DRTICPLCSQ-KRANPS---VVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIRRLFHD 272 (273)
Q Consensus 215 ~~~~CpiC~~-~~~np~---~l~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~~~~l~ri~~~ 272 (273)
+...||||++ .+.||. ++..|||+||..||.+|+.+ +.+||+|+.+++.+++++.+.+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~ 64 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLFE 64 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeeccc
Confidence 3568999999 888995 23349999999999999765 4789999999999999876643
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.2e-12 Score=97.83 Aligned_cols=57 Identities=21% Similarity=0.564 Sum_probs=49.5
Q ss_pred CCCCCCCCCCCCCCC----cccccccccccchhhHHHHHhcC---CCCCCCCCCCCcCCeeeCcc
Q 024073 214 PDRTICPLCSQKRAN----PSVVTVSGFVFCYACIFKYVSQY---KRCPVTLMPATVEQIRRLFH 271 (273)
Q Consensus 214 ~~~~~CpiC~~~~~n----p~~l~~~G~vfCy~Ci~~~~~~~---~~CPv~~~~~~~~~l~ri~~ 271 (273)
.+...||||.+.+.+ |.+++ |||+||..||.+|++.+ .+||+|+.++...++.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~ 76 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTD 76 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEE
T ss_pred cCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHH
Confidence 356789999999999 88887 99999999999999986 79999999988777665543
No 14
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=1.9e-12 Score=95.70 Aligned_cols=55 Identities=24% Similarity=0.562 Sum_probs=49.6
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhc------CCCCCCCCCCCCcCCeeeCc
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ------YKRCPVTLMPATVEQIRRLF 270 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~------~~~CPv~~~~~~~~~l~ri~ 270 (273)
+...||||.+.+.+|.+++ |||+||..||.+|++. ...||+|+.+++.+++++-+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78 (85)
T ss_dssp TTTSCTTTCSCCSSCEECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECS
T ss_pred cCCCCcCCChhhCcceeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCH
Confidence 5679999999999999887 9999999999999998 67999999999988887644
No 15
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4e-12 Score=93.98 Aligned_cols=55 Identities=27% Similarity=0.578 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhc------CCCCCCCCCCCCcCCeeeCc
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ------YKRCPVTLMPATVEQIRRLF 270 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~------~~~CPv~~~~~~~~~l~ri~ 270 (273)
+...||||.+.+.+|.+++ |||+||..|+.+|++. ..+||+|+.++..+++++-+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~ 78 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSC
T ss_pred CCCCCCCCCcccCCceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccH
Confidence 5679999999999999887 9999999999999987 78999999999888776543
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=2.6e-12 Score=95.28 Aligned_cols=47 Identities=26% Similarity=0.475 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
+...||||++.+.+|.+++ |||+||+.||.+|++....||+|+.++.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCCSEEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhcCeeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 4678999999999999886 9999999999999999999999999875
No 17
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.30 E-value=1.3e-12 Score=101.10 Aligned_cols=56 Identities=16% Similarity=0.482 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcC-CCCCCCCCCCCcCCeeeCc
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-KRCPVTLMPATVEQIRRLF 270 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~-~~CPv~~~~~~~~~l~ri~ 270 (273)
+...||||++.+.+|+.+..|||+||+.||.+|++.. ..||+|+.++..++|++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 77 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECT
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhH
Confidence 4678999999999998833499999999999999988 6999999999999988754
No 18
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.29 E-value=2.3e-12 Score=94.24 Aligned_cols=48 Identities=21% Similarity=0.535 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcC--CCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~--~~CPv~~~~~~ 262 (273)
+...||||++.+.+|.+++.|||+||+.||.+|++.+ ..||+|+.+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 5789999999999998876699999999999999976 68999999854
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.28 E-value=7.5e-13 Score=97.16 Aligned_cols=54 Identities=24% Similarity=0.581 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHHhc-------CCCCCCCCCCCCcCCeee
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-------YKRCPVTLMPATVEQIRR 268 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~-------~~~CPv~~~~~~~~~l~r 268 (273)
.+...||||.+.+.+|.+++ |||+||..||.+|++. ..+||+|+.+++.+++++
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 70 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQA 70 (79)
T ss_dssp CCCCEETTTTEECSSCCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGT
T ss_pred ccCCCCcCCCcccCCeeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCc
Confidence 35789999999999999987 9999999999999987 679999999998777654
No 20
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1.5e-12 Score=99.83 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHHhcC------CCCCCCCCC---CCcCCeee
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY------KRCPVTLMP---ATVEQIRR 268 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~------~~CPv~~~~---~~~~~l~r 268 (273)
.+...||||++.++||++++.|||+||..||.+|+.++ .+||+|+.+ ++.++|+.
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p 68 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ 68 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence 35789999999999999884599999999999999875 399995544 77777764
No 21
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.27 E-value=2.1e-12 Score=99.31 Aligned_cols=54 Identities=20% Similarity=0.476 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeee
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 268 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~r 268 (273)
+...||||.+.+.+|.++..|||+||..||.+|++.+.+||+|+.+++.+++++
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~ 74 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKN 74 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCc
Confidence 357899999999999887449999999999999999999999999998877764
No 22
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.27 E-value=4e-12 Score=96.25 Aligned_cols=54 Identities=20% Similarity=0.539 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHHhcC--CCCCCCCCCC-CcCCee
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPVTLMPA-TVEQIR 267 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~--~~CPv~~~~~-~~~~l~ 267 (273)
.+...||||.+.+.+|++++.|||+||..||.+|+.++ ..||+|+.++ ..++++
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 67 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALI 67 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCE
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccC
Confidence 36789999999999998885599999999999999865 4999999996 455554
No 23
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.5e-12 Score=91.67 Aligned_cols=48 Identities=21% Similarity=0.519 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCc-------ccccccccccchhhHHHHHhcCCCCCCCCCCCCc
Q 024073 215 DRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 263 (273)
Q Consensus 215 ~~~~CpiC~~~~~np-------~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~ 263 (273)
+...|+||++.+.++ .+++ |||+||..||.+|++.+..||+|+.+++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 577899999999887 5565 99999999999999999999999988753
No 24
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.26 E-value=6.4e-12 Score=89.75 Aligned_cols=48 Identities=29% Similarity=0.710 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
+...|+||++.+.+|.+...|||+||+.||.+|++++..||+|+.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 456899999999998544449999999999999999999999998765
No 25
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.25 E-value=3.2e-12 Score=114.01 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCC-CCCCCCCCCcCCeee
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKR-CPVTLMPATVEQIRR 268 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~-CPv~~~~~~~~~l~r 268 (273)
+...||||++.++||++++ |||+||..||.+|+..++. ||+|+.+++.++|+.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~ 260 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP 260 (281)
T ss_dssp STTBCTTTCSBCSSEEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred cccCCcCcCCHhcCCeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence 5789999999999999987 9999999999999997654 999999999888764
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.24 E-value=4.1e-12 Score=93.30 Aligned_cols=53 Identities=23% Similarity=0.458 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCCCCcc---cccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeee
Q 024073 215 DRTICPLCSQKRANPS---VVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 268 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~---~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~r 268 (273)
+...|+||++.+.++. +++ |||+||+.||.+|++.+.+||+|+.++..+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred CCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 4678999999998773 345 9999999999999999999999999998877654
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.24 E-value=2.8e-12 Score=102.31 Aligned_cols=57 Identities=18% Similarity=0.481 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCCCCc-------ccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeeeCccC
Q 024073 215 DRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 272 (273)
Q Consensus 215 ~~~~CpiC~~~~~np-------~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~~ 272 (273)
+...||||++.+++| ++++ |||+||..||.+|++++..||+|+.+++.++++++|.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 567899999999998 6766 99999999999999999999999999999999998864
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=7.1e-12 Score=88.42 Aligned_cols=43 Identities=28% Similarity=0.802 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHHhc---CCCCCCC
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ---YKRCPVT 257 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~---~~~CPv~ 257 (273)
.+...||||++.+.+|.+++ |||+||+.||.+|+++ ..+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35789999999999999986 9999999999999984 4689998
No 29
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=6.6e-12 Score=98.03 Aligned_cols=53 Identities=25% Similarity=0.575 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCC---CCCCCCCCCCcCCeeeC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK---RCPVTLMPATVEQIRRL 269 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~---~CPv~~~~~~~~~l~ri 269 (273)
...||||.+.+.+|.+++ |||+||..||.+|++.++ +||+|+.+++.+++++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQES 76 (112)
T ss_dssp HTSCSSSCCCCSSCCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCC
T ss_pred CCCCcccChhhcCeEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCcc
Confidence 468999999999999886 999999999999999764 89999999988887654
No 30
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.23 E-value=3.7e-12 Score=109.02 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=48.9
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCC-CCCCCCCCCCcCCeeeC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVEQIRRL 269 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~~~l~ri 269 (273)
+...||||++.++||++++ |||+||..||..|+..++ .||+|+.+++.++|+.-
T Consensus 105 ~~f~CPI~~elm~DPV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN 159 (179)
T 2f42_A 105 DYLCGKISFELMREPCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPN 159 (179)
T ss_dssp GGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEEC
T ss_pred HhhcccCccccCCCCeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcch
Confidence 5789999999999999987 999999999999999865 49999999998888753
No 31
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.22 E-value=5.6e-12 Score=98.45 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 264 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 264 (273)
+...||||.+.+.+|.++..|||+||+.||.+|++.+..||+|+.++...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 46789999999999988734999999999999999999999999988754
No 32
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.21 E-value=9.7e-12 Score=85.07 Aligned_cols=47 Identities=21% Similarity=0.540 Sum_probs=41.1
Q ss_pred CCCCCCCCCCCCCC----cccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRAN----PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~n----p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
+...|+||++.+.+ +.+++ |||+||..||.+|++.+.+||+|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46789999999876 45665 9999999999999999999999998763
No 33
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.21 E-value=4.4e-12 Score=103.51 Aligned_cols=47 Identities=19% Similarity=0.479 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCc
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 263 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~ 263 (273)
...||||.+.+.+|++++ |||+||..||.+|++.+..||+|+.++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 357999999999999987 99999999999999999999999988753
No 34
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.21 E-value=9.6e-12 Score=85.20 Aligned_cols=48 Identities=17% Similarity=0.459 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCC---cccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~n---p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
+...|+||++.+.+ +..++.|||+||..||.+|++.+..||+|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46789999999888 5566559999999999999999999999998764
No 35
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.4e-12 Score=91.81 Aligned_cols=55 Identities=24% Similarity=0.496 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeeeCc
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLF 270 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~ 270 (273)
.+...|+||++.+.+ .+++ |||+||+.||.+|++.+..||+|+.++...+...++
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 67 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGP 67 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccC
Confidence 356799999999999 6666 999999999999999999999999998876655444
No 36
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.20 E-value=6.4e-12 Score=99.83 Aligned_cols=54 Identities=26% Similarity=0.502 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCC-CCCCCCCCCCcCCeee
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVEQIRR 268 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~~~l~r 268 (273)
.+...||||++.+.+|.+++ |||+||+.||.+|++..+ +||+|+.+++.+++.+
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCcCChhhcCeEECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhccc
Confidence 35689999999999998886 999999999999999876 9999999998877654
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=84.76 Aligned_cols=43 Identities=28% Similarity=0.676 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHH---hcCCCCCCC
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV---SQYKRCPVT 257 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~---~~~~~CPv~ 257 (273)
.+...||||++.+.+|.+++ |||+||..||.+|+ +.+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35789999999999998887 99999999999995 456899998
No 38
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.18 E-value=1.1e-11 Score=99.21 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCC-CCCCCCCCCCc-CCe
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATV-EQI 266 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~-~~l 266 (273)
+...||||.+.+.+|.+++ |||+||..||..|+..+. .||+|+.+++. .++
T Consensus 51 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 103 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAM 103 (124)
T ss_dssp HHTBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCC
T ss_pred cCCCCCcCChHHcCcEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCC
Confidence 3578999999999999887 999999999999998654 99999999876 444
No 39
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.16 E-value=1.6e-11 Score=87.76 Aligned_cols=54 Identities=26% Similarity=0.581 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCCcccc--cccccc-cchhhHHHHHhcCCCCCCCCCCCCcCCeeeCcc
Q 024073 215 DRTICPLCSQKRANPSVV--TVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l--~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 271 (273)
+...|+||++...|++++ + |||+ ||+.|+.+|.+++++||+|+.++ +++++||.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i--~~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPI--QMIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCC--CEEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcch--hceEeeec
Confidence 467899999999999876 7 9999 89999999999999999999876 57889885
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.16 E-value=8.3e-12 Score=99.53 Aligned_cols=56 Identities=18% Similarity=0.489 Sum_probs=51.4
Q ss_pred CCCCCCCCCCCCCCc-------ccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeeeCcc
Q 024073 215 DRTICPLCSQKRANP-------SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271 (273)
Q Consensus 215 ~~~~CpiC~~~~~np-------~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 271 (273)
+...|+||++.+.++ ..++ |||+||..||.+|++.++.||+|+.++..+++++||.
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 567899999999887 5555 9999999999999999999999999999999999984
No 41
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=90.26 Aligned_cols=49 Identities=18% Similarity=0.473 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCCCCc---ccccccccccchhhHHHHHhcCCCCCCCCCCCCcC
Q 024073 215 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 264 (273)
Q Consensus 215 ~~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 264 (273)
+...|+||++.+.++ .+++ |||+||..||.+|++.+..||+|+.++...
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 567899999998887 5666 999999999999999999999999887653
No 42
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.8e-11 Score=87.16 Aligned_cols=47 Identities=21% Similarity=0.516 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCCCCcccc---cccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVV---TVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l---~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
+...|+||++.+.++..+ + |||+||+.||.+|++.+..||+|+.++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVL 63 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred CCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence 467899999999887544 6 9999999999999999999999998764
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.14 E-value=4.8e-11 Score=85.49 Aligned_cols=48 Identities=15% Similarity=0.410 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCCC---cccccccccccchhhHHHHHhcCCCCCCCCCCCCc
Q 024073 215 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 263 (273)
Q Consensus 215 ~~~~CpiC~~~~~n---p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~ 263 (273)
+...|+||++.+.+ +.+++ |||+||..||.+|++.+.+||+|+.++..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 46789999998753 35565 99999999999999999999999987653
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.14 E-value=2.1e-11 Score=96.28 Aligned_cols=54 Identities=20% Similarity=0.514 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhc-CCCCCCCCCCCCcCCeeeC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIRRL 269 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~~~~l~ri 269 (273)
+...||||.+.+.+|.+++ |||+||..||.+|++. ...||+|+.+++.+++++.
T Consensus 22 ~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 22 KSISCQICEHILADPVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HHTBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCCcHhcCcEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 3678999999999999886 9999999999999997 6799999999988877653
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.13 E-value=2.6e-11 Score=101.55 Aligned_cols=49 Identities=22% Similarity=0.485 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhc-CCCCCCCCCCCCc
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPATV 263 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~~ 263 (273)
+...||||++.+.+|.++..|||+||+.||.+|++. +..||+|+.++..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 356899999999999887449999999999999997 7899999998853
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.12 E-value=2.9e-11 Score=100.41 Aligned_cols=49 Identities=14% Similarity=0.313 Sum_probs=44.4
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCC-CCCCCCCCCCcC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVE 264 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~~ 264 (273)
+...||||.+.+.+|.+++ |||+||..||.+|++... .||+|+.+++..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 3578999999999999987 999999999999999765 899999998876
No 47
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.11 E-value=2.9e-11 Score=86.11 Aligned_cols=54 Identities=17% Similarity=0.515 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCCCcccc--cccccc-cchhhHHHHHhcCCCCCCCCCCCCcCCeeeCcc
Q 024073 215 DRTICPLCSQKRANPSVV--TVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l--~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 271 (273)
+...|+||++...|++++ + |||+ ||+.|+.++.+.+++||+|+.++ +++++||.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i--~~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEI--QLVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBC--CEEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchh--hceEEEec
Confidence 457899999999999877 7 9998 99999999999989999999876 57888884
No 48
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.10 E-value=2.2e-11 Score=96.55 Aligned_cols=52 Identities=21% Similarity=0.563 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeee
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 268 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~r 268 (273)
+...||||.+.+.+|+++..|||+||..||.+|++ ..||+|+.++...+++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~ 72 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKI 72 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCC
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccc
Confidence 46799999999999998834999999999999998 78999999987776653
No 49
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=4e-11 Score=89.35 Aligned_cols=53 Identities=23% Similarity=0.448 Sum_probs=44.7
Q ss_pred CCCCCCCCCCCCCC--------------cccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCee
Q 024073 215 DRTICPLCSQKRAN--------------PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIR 267 (273)
Q Consensus 215 ~~~~CpiC~~~~~n--------------p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ 267 (273)
+...|+||++.+.+ +.+++.|||+||..||.+|++.+..||+|+.++..+++-
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~~g 80 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQRIG 80 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhhcC
Confidence 45679999999977 335555999999999999999999999999998776653
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.09 E-value=3e-11 Score=91.79 Aligned_cols=48 Identities=17% Similarity=0.441 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCCC---cccccccccccchhhHHHHHhcCCCCCCCCCCCCc
Q 024073 215 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 263 (273)
Q Consensus 215 ~~~~CpiC~~~~~n---p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~ 263 (273)
+...|+||++.+.+ +.+++ |||+||..||.+|++.+..||+|+.++..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 46789999998877 56677 99999999999999999999999987653
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.00 E-value=5.6e-11 Score=93.66 Aligned_cols=47 Identities=17% Similarity=0.446 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhc-CCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~ 262 (273)
+...||||.+.+.+|++++ |||+||..||.+|++. +..||+|+.+++
T Consensus 14 ~~~~C~iC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHBCTTTCSBCSSCEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCccCCcccCceeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 4678999999999999987 9999999999999987 578999998875
No 52
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.00 E-value=4.5e-11 Score=98.34 Aligned_cols=49 Identities=16% Similarity=0.431 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCC-CCCCCCCCCCc
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATV 263 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~ 263 (273)
.+...||||.+.+.+|..++ |||+||..||.+|++..+ +||+|+.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECC-CCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 46789999999999998876 999999999999998765 89999987643
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.99 E-value=1.9e-10 Score=79.80 Aligned_cols=46 Identities=17% Similarity=0.461 Sum_probs=40.6
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 264 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 264 (273)
+...|+||.+...+|.+++ |||+||..||.+ ...+||+|+.++...
T Consensus 5 ~~~~C~IC~~~~~~p~~l~-CgH~fC~~Ci~~---~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLP-CLHTLCSGCLEA---SGMQCPICQAPWPLG 50 (56)
T ss_dssp CCSSCSSSCSSCBCCSCST-TSCCSBTTTCSS---SSSSCSSCCSSSSCC
T ss_pred cCCCceEeCCccCCeEEcC-CCCcccHHHHcc---CCCCCCcCCcEeecC
Confidence 5678999999999999987 999999999987 467999999887653
No 54
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.98 E-value=1.8e-10 Score=90.31 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCCcc------------------cccccccccchhhHHHHHh-----cCCCCCCCCCCCC
Q 024073 216 RTICPLCSQKRANPS------------------VVTVSGFVFCYACIFKYVS-----QYKRCPVTLMPAT 262 (273)
Q Consensus 216 ~~~CpiC~~~~~np~------------------~l~~~G~vfCy~Ci~~~~~-----~~~~CPv~~~~~~ 262 (273)
...|+||++.+.++. +++ |||+||..||..|++ .+..||+|+....
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 458999999997764 444 999999999999994 5679999997654
No 55
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.97 E-value=2.2e-10 Score=108.60 Aligned_cols=53 Identities=13% Similarity=0.447 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHh-cCCCCCCCCCCCCcCCeeeC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-QYKRCPVTLMPATVEQIRRL 269 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~-~~~~CPv~~~~~~~~~l~ri 269 (273)
...|+||.+...+|++++ |||+||..||..|++ .+..||+|+.++...+++.+
T Consensus 332 ~~~C~ICle~~~~pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 368999999999998887 999999999999999 67899999999887766554
No 56
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.97 E-value=5.3e-10 Score=83.06 Aligned_cols=54 Identities=20% Similarity=0.482 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCC--Cccccc-ccccccchhhHHHHHhc-CCCCCCCCCCCCcCCee
Q 024073 214 PDRTICPLCSQKRA--NPSVVT-VSGFVFCYACIFKYVSQ-YKRCPVTLMPATVEQIR 267 (273)
Q Consensus 214 ~~~~~CpiC~~~~~--np~~l~-~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~~~~l~ 267 (273)
.+...||||+++++ ++.+.+ .|||.||..|+.++.++ ++.||+|+++.+.+.+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchh
Confidence 36779999999885 344432 29999999999999854 57999999988776654
No 57
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.96 E-value=2.3e-10 Score=96.00 Aligned_cols=54 Identities=26% Similarity=0.502 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCC-CCCCCCCCCCcCCeee
Q 024073 214 PDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK-RCPVTLMPATVEQIRR 268 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~-~CPv~~~~~~~~~l~r 268 (273)
.+...||||.+.+.+|..++ |||+||..||.+|++..+ +||+|+.+++.+++.+
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~ 70 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred CCCCCCCCCChhhcCcEECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhh
Confidence 36789999999999998876 999999999999998754 9999999998877654
No 58
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.96 E-value=3.8e-10 Score=101.57 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcC--CCCCC--CCCCCCcCCeee
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPV--TLMPATVEQIRR 268 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~--~~CPv--~~~~~~~~~l~r 268 (273)
...+||||++.+++|+....|||+||..||.+|++++ ..||| |+.+++.++|+.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p 237 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR 237 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence 5789999999999998764599999999999999875 47999 889998888763
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.87 E-value=7.3e-10 Score=81.03 Aligned_cols=49 Identities=18% Similarity=0.520 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCcccccccccc-cchhhHHHHHhcCCCCCCCCCCCCcCCeeeCcc
Q 024073 216 RTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 271 (273)
...|+||.+...+|+.++ |||+ ||..|+.+| .+||+|+.+++ ..++||.
T Consensus 24 ~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~--~~~~i~~ 73 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVP-CGHLVTCKQCAEAV----DKCPMCYTVIT--FKQKILM 73 (74)
T ss_dssp HTBCTTTSSSBCCEEEET-TCCBCCCHHHHTTC----SBCTTTCCBCS--EEEECBC
T ss_pred CCCCCCCCCCCCCEEEcC-CCChhHHHHhhhcC----ccCCCcCcCcc--CcEEEee
Confidence 578999999999999887 9999 999999988 89999997664 5677775
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=2e-09 Score=78.75 Aligned_cols=49 Identities=20% Similarity=0.555 Sum_probs=41.6
Q ss_pred CCCCCCCCCCCCCcccccccccc-cchhhHHHHHhcCCCCCCCCCCCCcCCeeeCcc
Q 024073 216 RTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 271 (273)
...|+||++...+|+.++ |||+ ||..|+. +..+||+|+.+++ ..++||.
T Consensus 25 ~~~C~IC~~~~~~~~~~p-CgH~~~C~~C~~----~~~~CP~Cr~~i~--~~~~i~~ 74 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVP-CGHLVTCKQCAE----AVDKCPMCYTVIT--FKQKIFM 74 (75)
T ss_dssp HHSCSSSCSSCCCBCCSS-SCCCCBCHHHHH----HCSBCTTTCCBCC--CCCBCCC
T ss_pred CCCCCcCCCCCCCEEEec-CCCHHHHHHHhh----CCCCCccCCceec--CcEEEec
Confidence 568999999999999887 9999 9999995 4589999998764 4677774
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.83 E-value=1.7e-09 Score=84.94 Aligned_cols=50 Identities=16% Similarity=0.398 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCCCcc-----------------cccccccccchhhHHHHHhcCCCCCCCCCCCCcC
Q 024073 215 DRTICPLCSQKRANPS-----------------VVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 264 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~-----------------~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 264 (273)
+...|+||++.+.+++ ++..|||+|+..||..|++.+..||+|+.+....
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~~ 102 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQ 102 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCEE
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcceee
Confidence 3578999999998772 2234999999999999999999999999886543
No 62
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=9e-09 Score=74.28 Aligned_cols=51 Identities=16% Similarity=0.395 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCCCCcccccccccc-cchhhHHHHHhcCCCCCCCCCCCCcCCeeeCccC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 272 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~~ 272 (273)
+...|+||++...|++.++ |||+ ||+.|+.. ..+||+|+.++ .+.++||.+
T Consensus 14 ~~~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i--~~~~~i~~~ 65 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLP-CRHTCLCDGCVKY----FQQCPMCRQFV--QESFALSGP 65 (68)
T ss_dssp CSSCCSSSSSSCCCCEETT-TTBCCSCTTHHHH----CSSCTTTCCCC--CCEECCCSS
T ss_pred CCCCCCCcCcCCCCEEEEC-CCChhhhHHHHhc----CCCCCCCCcch--hceEEeecC
Confidence 5678999999999998888 9999 99999983 58999999755 457888865
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.68 E-value=7.5e-09 Score=76.80 Aligned_cols=50 Identities=18% Similarity=0.563 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCcccccccccc-cchhhHHHHHhcCCCCCCCCCCCCcCCeeeCccC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFHD 272 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~~ 272 (273)
...|+||.+...+++.++ |||+ ||+.|+.++ ..||+|+.+.+. .++||.+
T Consensus 18 ~~~C~IC~~~~~~~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~--~~~i~~p 68 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH--VQHVYLP 68 (79)
T ss_dssp HTBCTTTSSSBCCEEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE--EEECBCT
T ss_pred CCEeEEeCcccCcEEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC--eEEEEeC
Confidence 568999999999999887 9999 999999866 499999976554 6788754
No 64
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.65 E-value=3.2e-09 Score=84.83 Aligned_cols=50 Identities=16% Similarity=0.428 Sum_probs=0.5
Q ss_pred CCCCCCCCCCCCCcc-----------------cccccccccchhhHHHHHhcCCCCCCCCCCCCcCC
Q 024073 216 RTICPLCSQKRANPS-----------------VVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 265 (273)
Q Consensus 216 ~~~CpiC~~~~~np~-----------------~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 265 (273)
...|+||++.+.+++ +...|||+||..||.+|++.+..||+|+.+.....
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~k 114 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQK 114 (117)
T ss_dssp C------------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeeeec
Confidence 468999999998753 22359999999999999999999999998865443
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.53 E-value=1.3e-08 Score=77.29 Aligned_cols=55 Identities=20% Similarity=0.419 Sum_probs=43.8
Q ss_pred CCCCCCCCCCCCCCcccc--cccccccchhhHHHHHhc--------CCCCCC--CCCC--CCcCCeeeC
Q 024073 215 DRTICPLCSQKRANPSVV--TVSGFVFCYACIFKYVSQ--------YKRCPV--TLMP--ATVEQIRRL 269 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l--~~~G~vfCy~Ci~~~~~~--------~~~CPv--~~~~--~~~~~l~ri 269 (273)
+...|+||.+...++.++ ..|||.||..|+.+|++. .-+||. |+.. +..++++++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~~l 72 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIECM 72 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHHHH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHHHH
Confidence 457899999999888554 249999999999999973 238999 9988 776666554
No 66
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.48 E-value=3.7e-08 Score=92.12 Aligned_cols=50 Identities=20% Similarity=0.537 Sum_probs=43.0
Q ss_pred CCCCCCCCCCCCCCcccccccccc-cchhhHHHHHhcCCCCCCCCCCCCcCCeeeCcc
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFV-FCYACIFKYVSQYKRCPVTLMPATVEQIRRLFH 271 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~v-fCy~Ci~~~~~~~~~CPv~~~~~~~~~l~ri~~ 271 (273)
+...|+||.+...+|+.++ |||+ ||..|+..| ..||+|+.+. +..++||.
T Consensus 294 ~~~~C~IC~~~~~~~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i--~~~~~i~~ 344 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIP-CGHLVVCQECAPSL----RKCPICRGII--KGTVRTFL 344 (345)
T ss_dssp TTCBCTTTSSSBCCEEEET-TCCEEECTTTGGGC----SBCTTTCCBC--CEEEECC-
T ss_pred CCCCCCccCCcCCceEEcC-CCChhHhHHHHhcC----CcCCCCCCCc--cCeEEeec
Confidence 4679999999999999987 9999 999999977 7999999765 45677774
No 67
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.34 E-value=2.1e-07 Score=71.92 Aligned_cols=44 Identities=25% Similarity=0.515 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCc-ccccccccccchhhHHHHHhc-CCCCCCCCCCCC
Q 024073 218 ICPLCSQKRANP-SVVTVSGFVFCYACIFKYVSQ-YKRCPVTLMPAT 262 (273)
Q Consensus 218 ~CpiC~~~~~np-~~l~~~G~vfCy~Ci~~~~~~-~~~CPv~~~~~~ 262 (273)
.|++|.-++..= .+++ |+|||||+|+..|.++ .+.||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence 699999998776 4666 9999999999999854 689999998864
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=4.1e-07 Score=67.70 Aligned_cols=51 Identities=16% Similarity=0.430 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCCC--CCcccccccc-----cccchhhHHHHHhcCC--CCCCCCCCCCcCC
Q 024073 214 PDRTICPLCSQKR--ANPSVVTVSG-----FVFCYACIFKYVSQYK--RCPVTLMPATVEQ 265 (273)
Q Consensus 214 ~~~~~CpiC~~~~--~np~~l~~~G-----~vfCy~Ci~~~~~~~~--~CPv~~~~~~~~~ 265 (273)
.+...|+||++.. .++.+++ |+ |.|...||.+|++.++ .||+|+.++..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3567899999865 4565554 85 9999999999999864 8999998876543
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=2.3e-06 Score=62.88 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=42.0
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcC--CCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY--KRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~--~~CPv~~~~~~ 262 (273)
....|.||.+.+..-..+..|||.|-..||.+|++.+ .+||+|+.+..
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4578999999998666676799999999999999988 89999997754
No 70
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=97.52 E-value=4.3e-05 Score=79.39 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=49.7
Q ss_pred CCCCCCCCCCCCCCCcccccccc-cccchhhHHHHHhcCCCCCCCCCCCCcCCeee
Q 024073 214 PDRTICPLCSQKRANPSVVTVSG-FVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 268 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np~~l~~~G-~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~r 268 (273)
++...|||.++.++||++++ +| +.|-..+|.+|+..+++||+|+.+++.++|+.
T Consensus 889 P~~F~cPIs~~lM~DPVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liP 943 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTP 943 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEE
T ss_pred cHHhCCcchhhHHhCCeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccc
Confidence 37899999999999999998 76 79999999999999999999999999888864
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.20 E-value=0.00011 Score=68.58 Aligned_cols=48 Identities=15% Similarity=0.378 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCCCC----c-ccc--cccccccchhhHHHHHhcC-----------CCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRAN----P-SVV--TVSGFVFCYACIFKYVSQY-----------KRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~n----p-~~l--~~~G~vfCy~Ci~~~~~~~-----------~~CPv~~~~~~ 262 (273)
....|+||...+.+ | .+| ++|||.|-..|+++|++.. |.||.|+.+++
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45689999998776 3 123 2699999999999999853 68999998875
No 72
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.81 E-value=0.00091 Score=46.70 Aligned_cols=48 Identities=15% Similarity=0.354 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCCCCcccccccc--c---ccchhhHHHHHhc--CCCCCCCCCCCCc
Q 024073 215 DRTICPLCSQKRANPSVVTVSG--F---VFCYACIFKYVSQ--YKRCPVTLMPATV 263 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G--~---vfCy~Ci~~~~~~--~~~CPv~~~~~~~ 263 (273)
+...|.||+....++-+.+ |. + .|-..|+.+|+.. +..||+|+.+...
T Consensus 5 ~~~~CrIC~~~~~~~l~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 4568999998766665444 43 3 8889999999975 5789999987653
No 73
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.53 E-value=0.0017 Score=57.50 Aligned_cols=48 Identities=21% Similarity=0.384 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCC--CCCCCCCCCCc
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYK--RCPVTLMPATV 263 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~--~CPv~~~~~~~ 263 (273)
...|.+|.+.+.-...|+.||+.|-..|+.+|++.++ +||.|+.+-..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 5689999999997788888999999999999998765 99999987543
No 74
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.16 E-value=0.11 Score=38.48 Aligned_cols=35 Identities=20% Similarity=0.636 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCCcccc---cccccccchhhHHHHHhc
Q 024073 216 RTICPLCSQKRANPSVV---TVSGFVFCYACIFKYVSQ 250 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l---~~~G~vfCy~Ci~~~~~~ 250 (273)
...|.+|.+.+.+-.-. ++-+|-||++|-..+++.
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 46899999999988422 347999999999999984
No 75
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.044 Score=51.37 Aligned_cols=52 Identities=19% Similarity=0.401 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCCCcccccccccccchhh--HHHHHhc--CCCCCCCCCCCCcCCee
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYAC--IFKYVSQ--YKRCPVTLMPATVEQIR 267 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~C--i~~~~~~--~~~CPv~~~~~~~~~l~ 267 (273)
+..|||....++.|+=-..|-|+-|++- ..+..++ .-+||||++.+..++|+
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ 304 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLA 304 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEE
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHee
Confidence 4689999999999986666999988765 3333333 35899999999988876
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.32 E-value=0.043 Score=41.24 Aligned_cols=31 Identities=23% Similarity=0.693 Sum_probs=24.8
Q ss_pred CCCCCCCCCCC-CCCccc--ccccccccchhhHHH
Q 024073 215 DRTICPLCSQK-RANPSV--VTVSGFVFCYACIFK 246 (273)
Q Consensus 215 ~~~~CpiC~~~-~~np~~--l~~~G~vfCy~Ci~~ 246 (273)
+...|+||.+. .++|+. +. |||-||..|+..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHH
Confidence 35689999976 555654 55 999999999997
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.19 E-value=0.065 Score=50.07 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=40.6
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHh---c--CCCCCCCCCCCCcCCee
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS---Q--YKRCPVTLMPATVEQIR 267 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~---~--~~~CPv~~~~~~~~~l~ 267 (273)
+..||+-...++.|+=-..|-|.-|++-. .|++ + .-+||||++.+..++|+
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~~~dL~ 270 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAAYESLI 270 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCCGGGEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccCHHHeE
Confidence 46899999999999866569999777643 3553 2 35899999999998886
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.91 E-value=0.12 Score=39.33 Aligned_cols=45 Identities=24% Similarity=0.569 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
...|-.|-..-++= +..+-|..|..|+..-+....+||+|++++-
T Consensus 28 ~~nCKsCWf~~k~L--V~C~dHYLCl~CLtlmL~~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFENKGL--VECNNHYLCLNCLTLLLSVSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSCCSSE--EECSSCEEEHHHHHHTCSSSSEETTTTEECC
T ss_pred cccChhhccccCCe--eeecchhhHHHHHHHHHhhccCCcccCCcCC
Confidence 56799998877754 4448999999999999999999999998763
No 79
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=89.74 E-value=0.34 Score=36.04 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCC--CcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCeee
Q 024073 215 DRTICPLCSQKRA--NPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQIRR 268 (273)
Q Consensus 215 ~~~~CpiC~~~~~--np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l~r 268 (273)
....|..|.+.+. ++-.+. ||.+||-. ++|-++ +.|+..-+.+..+.|.+
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~--HRy~e~-H~C~fDyK~~gr~~iak 75 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCAS--HRYAEA-HGCNYDYKSAGRRYLEE 75 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTT--TCSTGG-GTCCSCCSSSCCCCCCC
T ss_pred cCccchhhCCeecccCCeEcC-CCCEeccc--CCCccC-CCCcchhhHHHHHHHHH
Confidence 4679999999655 488887 99999985 455544 47888777777666654
No 80
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=89.09 E-value=0.048 Score=49.95 Aligned_cols=46 Identities=20% Similarity=0.496 Sum_probs=36.1
Q ss_pred CCCCCCCCCCCCCCccccc---ccc--cccchhhHHHHHhcCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVT---VSG--FVFCYACIFKYVSQYKRCPVTLMP 260 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~---~~G--~vfCy~Ci~~~~~~~~~CPv~~~~ 260 (273)
..+.||+|+..-.-..+-. .-| |.+|--|-..|=-...+||.|+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4679999999866554431 245 799999999998888999999975
No 81
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.79 E-value=0.26 Score=34.12 Aligned_cols=36 Identities=19% Similarity=0.495 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCCCc-----ccccc--cccccchhhHHHHHhc
Q 024073 215 DRTICPLCSQKRANP-----SVVTV--SGFVFCYACIFKYVSQ 250 (273)
Q Consensus 215 ~~~~CpiC~~~~~np-----~~l~~--~G~vfCy~Ci~~~~~~ 250 (273)
+...||-|...++-. ..+.. ||+.|||.|...|-..
T Consensus 5 ~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 5 NTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred cceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 346799999887655 34444 9999999999887643
No 82
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=85.71 E-value=0.19 Score=51.25 Aligned_cols=51 Identities=25% Similarity=0.471 Sum_probs=42.1
Q ss_pred CCCCCCCCCCCCCCCCCCc---------ccccccc--------------------cccchhhHHHHHhc--------CCC
Q 024073 211 PLPPDRTICPLCSQKRANP---------SVVTVSG--------------------FVFCYACIFKYVSQ--------YKR 253 (273)
Q Consensus 211 ~~p~~~~~CpiC~~~~~np---------~~l~~~G--------------------~vfCy~Ci~~~~~~--------~~~ 253 (273)
.+|+|..+|+-|++.+.|| +-|+.|| +.+|-.|..+|-.. -..
T Consensus 106 ~i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~a 185 (761)
T 3vth_A 106 PVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVA 185 (761)
T ss_dssp CCCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCC
T ss_pred ccCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCc
Confidence 3677899999999999988 3666788 78899999999863 357
Q ss_pred CCCCCCCC
Q 024073 254 CPVTLMPA 261 (273)
Q Consensus 254 CPv~~~~~ 261 (273)
||.||-.+
T Consensus 186 C~~CGP~l 193 (761)
T 3vth_A 186 CFDCGPSL 193 (761)
T ss_dssp CTTTSCCE
T ss_pred CCccCCee
Confidence 99999665
No 83
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=85.39 E-value=0.55 Score=36.41 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=40.5
Q ss_pred CCCCCCCCCCCCC--cccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCe
Q 024073 216 RTICPLCSQKRAN--PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 266 (273)
Q Consensus 216 ~~~CpiC~~~~~n--p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l 266 (273)
-..|..|.+++.+ ......-|.+||-.|-.+-+...++|-.|+.+++.+++
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEES
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchhe
Confidence 4789999999973 22334589999999999887777799999999876554
No 84
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=84.98 E-value=1.1 Score=33.53 Aligned_cols=47 Identities=17% Similarity=0.345 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCC-----c-ccccccccccchhhHHHHHh-cCCCCCCCCCCCC
Q 024073 216 RTICPLCSQKRAN-----P-SVVTVSGFVFCYACIFKYVS-QYKRCPVTLMPAT 262 (273)
Q Consensus 216 ~~~CpiC~~~~~n-----p-~~l~~~G~vfCy~Ci~~~~~-~~~~CPv~~~~~~ 262 (273)
..+|-||++.+-- + +++..|++-.|.+|..--.+ .++.||-|+.+.+
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4589999997432 2 57778999999999875554 4578999997764
No 85
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=84.85 E-value=0.062 Score=41.04 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
...||.|..++.- ..|+.+|-.|-.+|. ....||-|+.++.
T Consensus 32 ~~~CP~Cq~eL~~-----~g~~~hC~~C~~~f~-~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ-----DNGHARCRSCGEFIE-MKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE-----ETTEEEETTTCCEEE-EEEECTTTCSBCE
T ss_pred cccCccCCCccee-----cCCEEECccccchhh-ccccCcchhhHHH
Confidence 3689999998752 267778999988654 5589999998874
No 86
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=82.60 E-value=0.42 Score=35.19 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=24.5
Q ss_pred CCCCCCCCCC-----CcccccccccccchhhHHHHHhcC
Q 024073 218 ICPLCSQKRA-----NPSVVTVSGFVFCYACIFKYVSQY 251 (273)
Q Consensus 218 ~CpiC~~~~~-----np~~l~~~G~vfCy~Ci~~~~~~~ 251 (273)
-||-|...+. ..+.++.||+.||+.|-..|=++|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H 65 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQH 65 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTT
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCchhhcC
Confidence 3888877542 235676799999999988774444
No 87
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=82.35 E-value=0.26 Score=38.09 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=19.5
Q ss_pred CCcccccccccccchhhHHHHHhcCCCCCCCCCC
Q 024073 227 ANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMP 260 (273)
Q Consensus 227 ~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~ 260 (273)
..|..|..|||+|+ +-+....+||.|+..
T Consensus 65 v~p~~C~~CG~~F~-----~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK-----AEINIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBCC-----CCSSCCSSCSSSCCC
T ss_pred EECcChhhCcCeec-----ccCCCCCCCcCCCCC
Confidence 34455556999993 234456899999854
No 88
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=81.31 E-value=0.69 Score=33.59 Aligned_cols=34 Identities=26% Similarity=0.616 Sum_probs=23.1
Q ss_pred CCCCCC--CCCCCC-----Cccccc-----ccccccchhhHHHHHh
Q 024073 216 RTICPL--CSQKRA-----NPSVVT-----VSGFVFCYACIFKYVS 249 (273)
Q Consensus 216 ~~~Cpi--C~~~~~-----np~~l~-----~~G~vfCy~Ci~~~~~ 249 (273)
..-||- |...+. ..+.++ .||+.||+.|-..|=.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 345776 776543 235664 5999999999876643
No 89
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=79.85 E-value=0.53 Score=39.23 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 024073 66 KKIQKIIFACYPWLHASCEGL 86 (273)
Q Consensus 66 ~~~k~~f~~~YP~i~~~~~~~ 86 (273)
...+.+=..-||-|-..|+..
T Consensus 27 ~~A~~A~~eG~~~iA~~F~~~ 47 (170)
T 3pwf_A 27 IFAEKAEQEGFPNIAKLFRAI 47 (170)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 333444455677766666544
No 90
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=79.85 E-value=0.51 Score=48.22 Aligned_cols=51 Identities=33% Similarity=0.613 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCCCCCCCc---------ccccccc--------------------cccchhhHHHHHh--------cCCC
Q 024073 211 PLPPDRTICPLCSQKRANP---------SVVTVSG--------------------FVFCYACIFKYVS--------QYKR 253 (273)
Q Consensus 211 ~~p~~~~~CpiC~~~~~np---------~~l~~~G--------------------~vfCy~Ci~~~~~--------~~~~ 253 (273)
.+|+|..+|+-|++.+.|| +-|+.|| +.+|-.|..+|-. +-..
T Consensus 101 ~i~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~a 180 (772)
T 4g9i_A 101 IIPPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTA 180 (772)
T ss_dssp CCCCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCC
T ss_pred ccCCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCC
Confidence 3577889999999998888 3555576 6789999999986 3358
Q ss_pred CCCCCCCC
Q 024073 254 CPVTLMPA 261 (273)
Q Consensus 254 CPv~~~~~ 261 (273)
||.||-.+
T Consensus 181 C~~CGP~l 188 (772)
T 4g9i_A 181 CPVCGPSY 188 (772)
T ss_dssp CTTTSCCE
T ss_pred CccCCceE
Confidence 99999654
No 91
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=79.51 E-value=0.21 Score=36.84 Aligned_cols=41 Identities=24% Similarity=0.536 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCc
Q 024073 217 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATV 263 (273)
Q Consensus 217 ~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~ 263 (273)
..||.|..++.- ..|+.+|-.|-.++-.+- .||-|+.++..
T Consensus 3 ~~CP~C~~~l~~-----~~~~~~C~~C~~~~~~~a-fCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALER-----NGDTAHCETCAKDFSLQA-LCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEE-----CSSEEECTTTCCEEEEEE-ECSSSCSCCCE
T ss_pred CCCCCCCCcccc-----CCCceECccccccCCCcc-cCcchhhHHHH
Confidence 579999988742 266777888887665544 89999988753
No 92
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=78.15 E-value=0.54 Score=47.21 Aligned_cols=49 Identities=33% Similarity=0.547 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCCCCCCc---------ccccccc--------------------cccchhhHHHHHh--------cCCCCC
Q 024073 213 PPDRTICPLCSQKRANP---------SVVTVSG--------------------FVFCYACIFKYVS--------QYKRCP 255 (273)
Q Consensus 213 p~~~~~CpiC~~~~~np---------~~l~~~G--------------------~vfCy~Ci~~~~~--------~~~~CP 255 (273)
|+|..+|+-|++.+.|| +-|+.|| +.+|-.|..+|-. +-..||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 34566677777666665 2344455 7889999999986 336899
Q ss_pred CCCCCC
Q 024073 256 VTLMPA 261 (273)
Q Consensus 256 v~~~~~ 261 (273)
.||-.+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 999665
No 93
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=75.87 E-value=2.3 Score=29.84 Aligned_cols=48 Identities=17% Similarity=0.387 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCCC-cccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCe
Q 024073 215 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 266 (273)
Q Consensus 215 ~~~~CpiC~~~~~n-p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l 266 (273)
....|..|.+.+.- +-.+. ||.+||-. ++|-+. +.|+-.-+.+..+.|
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~--HRy~e~-H~C~fDyk~~gr~~l 62 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCR-CGTTFCGS--HRYPEV-HGCTFDFKSAGSGPS 62 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECS-SSCEECTT--TCSTTT-TTCCCCCSCCCCSCC
T ss_pred cCCcChhhCCccCccCEEee-cCCEeccc--cCCccc-CCCCchhhHHHHHHh
Confidence 35689999997654 46675 99999975 444444 468877666655443
No 94
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=75.47 E-value=2 Score=33.19 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=38.1
Q ss_pred CCCCCCCCCCCCCC---cccccccccccchhhHHHHHhcCCCCCCCCCCCCcC
Q 024073 215 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 264 (273)
Q Consensus 215 ~~~~CpiC~~~~~n---p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 264 (273)
+-..|..|.+++.+ .-.. .-|.+||-+|-.+-....++|..|++++...
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~-~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYY-KLGRKLCRRDYLRLFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEE-ETTEEECHHHHHHHHCCCEECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEEE-ECCEEeecCchhhhCCCccChhhcCCccCcc
Confidence 46889999999963 3344 4999999999887665555899999988653
No 95
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.36 E-value=1.4 Score=34.80 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCc---ccccccccccchhhHHHH
Q 024073 216 RTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 216 ~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~~ 247 (273)
...|.+|...+.-- --+..||.|||..|....
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 45899999986522 355569999999997644
No 96
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=74.76 E-value=2.6 Score=29.65 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=33.8
Q ss_pred CCCCCCCCCCCCCC-cccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCe
Q 024073 215 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 266 (273)
Q Consensus 215 ~~~~CpiC~~~~~n-p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l 266 (273)
....|..|.+.+.- +-.+. ||.+||-. ++|-+. +.|+-.-+.+..++|
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~--HR~~e~-H~C~fDyk~~gr~~~ 62 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKCK-CGSTFCGS--HRYPEK-HECSFDFKEVGSGPS 62 (64)
T ss_dssp CSCSCTTTCCCCTTSCEECT-TSCEECSS--SCSSTT-TTCCCCCSCSCCCSC
T ss_pred cCCcChhhCCcccccCeEee-cCCEeccc--CCCccc-cCCCcchhHHhHHHh
Confidence 35689999997654 46674 99999975 444444 468877776666554
No 97
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=73.95 E-value=0.89 Score=38.37 Aligned_cols=9 Identities=33% Similarity=0.844 Sum_probs=7.2
Q ss_pred CCCCCCCCC
Q 024073 252 KRCPVTLMP 260 (273)
Q Consensus 252 ~~CPv~~~~ 260 (273)
.+||+|+.+
T Consensus 172 ~~CP~C~~~ 180 (191)
T 1lko_A 172 ELCPACAHP 180 (191)
T ss_dssp SBCTTTCCB
T ss_pred CCCCCCcCC
Confidence 389999965
No 98
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=73.36 E-value=2.2 Score=31.57 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCCCc---ccccccccccchhhHHHH
Q 024073 214 PDRTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 214 ~~~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~~ 247 (273)
.+...|.+|.....-- --+..||.|||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 3556899999976432 245569999999997643
No 99
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=73.22 E-value=0.92 Score=29.80 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=7.2
Q ss_pred CCCCCCCCC
Q 024073 252 KRCPVTLMP 260 (273)
Q Consensus 252 ~~CPv~~~~ 260 (273)
=+||+|+.+
T Consensus 31 w~CP~Cg~~ 39 (46)
T 6rxn_A 31 WCCPVCGVS 39 (46)
T ss_dssp CBCTTTCCB
T ss_pred CcCcCCCCc
Confidence 489999964
No 100
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=73.18 E-value=2.4 Score=36.59 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCc---ccccccccccchhhHHHH
Q 024073 215 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 215 ~~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~~ 247 (273)
+...|.+|.....-- .-|..||.|||..|-...
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356899999876422 345669999999997643
No 101
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.18 E-value=1.7 Score=30.82 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCCc----ccccccccccchhhHHHHHhcCCCCCCCCCCCCcC
Q 024073 215 DRTICPLCSQKRANP----SVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 264 (273)
Q Consensus 215 ~~~~CpiC~~~~~np----~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 264 (273)
....|..|.+.+.-+ -.+. ||.+||-. ++|-++| .|+..-+.+..+
T Consensus 14 ~~~rC~~C~kk~gL~~~egf~Cr-Cg~~FC~~--HRy~e~H-~C~fDyk~~gr~ 63 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQELGSCR-CGYVFCML--HRLPEQH-DCTFDHMGRGSG 63 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHHHCCS-SSCCCCTT--TCSTGGG-TCSSCSSCSSCC
T ss_pred cCCcchhhCCeecccccCceEec-CCCEehhc--cCCcccc-CCcccccccccc
Confidence 457899999998766 4674 99999974 4454444 577776655443
No 102
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.09 E-value=2.3 Score=30.92 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCCCc---ccccccccccchhhHHH
Q 024073 216 RTICPLCSQKRANP---SVVTVSGFVFCYACIFK 246 (273)
Q Consensus 216 ~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~ 246 (273)
...|.+|.....-- -=+..||.|||..|...
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 46899999986432 24456999999999654
No 103
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.61 E-value=2.2 Score=30.92 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCCc---ccccccccccchhhHHHH
Q 024073 215 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 215 ~~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~~ 247 (273)
+...|.+|.....-- --+..||.|||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 346899999986522 245569999999998653
No 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=71.53 E-value=1.7 Score=30.05 Aligned_cols=41 Identities=27% Similarity=0.597 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCcc--cccccccccchhhHHHHHhcC-CCCCCCC
Q 024073 217 TICPLCSQKRANPS--VVTVSGFVFCYACIFKYVSQY-KRCPVTL 258 (273)
Q Consensus 217 ~~CpiC~~~~~np~--~l~~~G~vfCy~Ci~~~~~~~-~~CPv~~ 258 (273)
..|--|..++.+.. .++.|+.+||.+|=. |+-+. +.||.|.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhhccCCcCCC
Confidence 35999999987654 477899999999976 55444 7899883
No 105
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=71.39 E-value=4.1 Score=31.17 Aligned_cols=48 Identities=21% Similarity=0.211 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 264 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 264 (273)
+-..|..|.+++.+......-|..||..|-.+-. ..+|..|++++..+
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~--~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH--AVVCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS--CCBCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc--CccCcccCCcCCcC
Confidence 3578999999998765444589999999876532 36899999998864
No 106
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=71.19 E-value=4.3 Score=29.69 Aligned_cols=53 Identities=17% Similarity=0.299 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcC-CeeeC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE-QIRRL 269 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~-~l~ri 269 (273)
+-..|..|.+++.+......-|.+||..|-.+- -..+|..|++++... ..++.
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~~~~~~~a 85 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRE--DSPKCKGCFKAIVAGDQNVEY 85 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTC--CCCBCSSSCCBCCSSSCEEES
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhh--cCCccccCCCccccCCeEEEe
Confidence 357899999999877554558999998886422 136999999998854 34443
No 107
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=71.12 E-value=2.4 Score=30.87 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCCc---ccccccccccchhhHHHH
Q 024073 215 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 215 ~~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~~ 247 (273)
+...|.+|.....-- -=+..||.|||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 456899999986432 345569999999997654
No 108
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=70.92 E-value=1.3 Score=37.71 Aligned_cols=10 Identities=30% Similarity=1.102 Sum_probs=7.9
Q ss_pred CCCCCCCCCC
Q 024073 252 KRCPVTLMPA 261 (273)
Q Consensus 252 ~~CPv~~~~~ 261 (273)
..||+|+.+-
T Consensus 187 ~~CP~C~~~k 196 (202)
T 1yuz_A 187 EKCPICFRPK 196 (202)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCCCCh
Confidence 6899999653
No 109
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=70.80 E-value=2.2 Score=33.59 Aligned_cols=42 Identities=19% Similarity=0.343 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCc---ccccccccccchhhHHHHHhcCCCCCCC
Q 024073 216 RTICPLCSQKRANP---SVVTVSGFVFCYACIFKYVSQYKRCPVT 257 (273)
Q Consensus 216 ~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~~~~~~~~CPv~ 257 (273)
...|..|....+-- --+..||.|||..|-...+.....|-.|
T Consensus 19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C 63 (120)
T 1y02_A 19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLC 63 (120)
T ss_dssp -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHH
T ss_pred cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHH
Confidence 45899999987643 2455699999999976655444445444
No 110
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=70.60 E-value=0.56 Score=28.93 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCccccc
Q 024073 215 DRTICPLCSQKRANPSVVT 233 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~ 233 (273)
+.++||+|++.++++-.|.
T Consensus 4 EGFiCP~C~~~l~s~~~L~ 22 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADELF 22 (34)
T ss_dssp EEEECTTTCCEESSHHHHH
T ss_pred cccCCcHHHHHcCCHHHHH
Confidence 3578999999999986553
No 111
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=70.11 E-value=1.9 Score=36.88 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCCc---ccccccccccchhhHHHH
Q 024073 215 DRTICPLCSQKRANP---SVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 215 ~~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~~ 247 (273)
+...|++|.....-- .=|..||.|||..|....
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 346899999976421 345569999999997643
No 112
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=69.64 E-value=2.4 Score=31.42 Aligned_cols=33 Identities=24% Similarity=0.381 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCc---ccccccccccchhhHHHHH
Q 024073 216 RTICPLCSQKRANP---SVVTVSGFVFCYACIFKYV 248 (273)
Q Consensus 216 ~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~~~ 248 (273)
...|.+|.....-- --+..||.|||..|....+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 45799999976422 3455699999999976544
No 113
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=69.30 E-value=1.4 Score=36.55 Aligned_cols=50 Identities=14% Similarity=0.317 Sum_probs=37.6
Q ss_pred CCCCCCCCCCCCCC---cccccccccccchhhHHHHHhcCCCCCCCCCCCCcCC
Q 024073 215 DRTICPLCSQKRAN---PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 265 (273)
Q Consensus 215 ~~~~CpiC~~~~~n---p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 265 (273)
+-..|..|.+++.+ .... .-|.+||..|-.+-.....+|..|++++...+
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~-~~g~~yC~~cy~~~~~~~~~C~~C~~~I~~~e 83 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIRLFGNSGACSACGQSIPASE 83 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEE-ETTEEECHHHHHHHHSCCEECTTTCCEECTTS
T ss_pred cCcccCCCCcccccCCceEEE-eCCccccccccccccccCCccccCCCccccCc
Confidence 35789999999875 4444 48999999998776544447999999886533
No 114
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=68.94 E-value=8 Score=27.87 Aligned_cols=48 Identities=19% Similarity=0.348 Sum_probs=33.7
Q ss_pred CCCCCCCCCCCCCC-cccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCe
Q 024073 215 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 266 (273)
Q Consensus 215 ~~~~CpiC~~~~~n-p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l 266 (273)
....|..|.+.+.- +-.+. ||.+||-. ++|-++ +.|+..-+.+..+.|
T Consensus 24 ~~~RC~~C~kkvgL~~f~Cr-Cg~~FCs~--HRy~e~-H~C~fDyk~~gr~~~ 72 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKCR-CGSTFCGT--HRYPES-HECQFDFKGVASGPS 72 (74)
T ss_dssp CCCBCSSSCCBCTTTCEECT-TSCEECTT--TCSTTT-SCCCSCTTSCCCCCC
T ss_pred cCccchhhcCcccccceEec-cCCEeccc--cCCCcC-CCCcCchhHHhHHhh
Confidence 35789999987655 46775 99999975 444444 468887776655544
No 115
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=68.88 E-value=2.9 Score=29.62 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCc---ccccccccccchhhHHH
Q 024073 217 TICPLCSQKRANP---SVVTVSGFVFCYACIFK 246 (273)
Q Consensus 217 ~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~ 246 (273)
..|.+|.....-- --+..||.|||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 4799999976522 34456999999999753
No 116
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=67.47 E-value=21 Score=25.40 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 264 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 264 (273)
....|.-|.+.|.+..+. .-|.+|-..| -+|-.|++++...
T Consensus 24 ~~~~C~~C~~~I~~~~~~-a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVK-ARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSCCEE-SSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecccEEE-ECCceECccC--------CEecCCCCCCCCC
Confidence 457899999999875443 3676655443 3677888877643
No 117
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=65.93 E-value=3.3 Score=28.02 Aligned_cols=11 Identities=18% Similarity=0.262 Sum_probs=8.4
Q ss_pred cCCCCCCCCCC
Q 024073 250 QYKRCPVTLMP 260 (273)
Q Consensus 250 ~~~~CPv~~~~ 260 (273)
.+=+||+|+.+
T Consensus 35 ~dw~CP~Cg~~ 45 (54)
T 4rxn_A 35 DDWVCPLCGVG 45 (54)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCcCCCCc
Confidence 44589999964
No 118
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=65.45 E-value=7.8 Score=31.35 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=38.3
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCCe
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQI 266 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~l 266 (273)
+-..|..|.+++.+.... .-|.+||-.|-.+-. ..+|..|++++...++
T Consensus 32 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f--~~~C~~C~~~I~~~~~ 80 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRF--GTKCAACQLGIPPTQV 80 (169)
T ss_dssp TTSBCTTTCCBCCSCCEE-SSSCEECHHHHHHHH--SCBCTTTCCBCCTTSE
T ss_pred ccCccCCCCCcCCCCCcc-cCCeeeecccccccc--cccccccccccCCCcE
Confidence 468899999999887654 589999999876543 3589999998876553
No 119
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=61.43 E-value=7.9 Score=31.70 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=36.2
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVEQ 265 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~~ 265 (273)
+-..|..|.+++.+.... .-|..||.+|-.+-. ..+|..|++++...+
T Consensus 86 ~CF~C~~C~~~L~~~~f~-~~g~~yC~~~y~~~f--~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFS-RGESVYCKDDFFKRF--GTKCAACQLGIPPTQ 133 (182)
T ss_dssp STTSCTTTCCCCSSCCEE-ETTEEECHHHHHHTT--SCCCTTTCCCCCSSC
T ss_pred ccCccCCCCCccCCCcee-ECCEeeecCcccccc--ccccccCCCccCCCc
Confidence 357899999998877654 489999988866433 258999999886544
No 120
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=59.67 E-value=9 Score=31.64 Aligned_cols=35 Identities=17% Similarity=0.444 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHh
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS 249 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~ 249 (273)
+-..|..|.+++.+......-|.+||..|-.+-..
T Consensus 33 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 33 SCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 46889999999988765455899999999887654
No 121
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=59.41 E-value=2 Score=32.02 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=8.2
Q ss_pred cCCCCCCCCCC
Q 024073 250 QYKRCPVTLMP 260 (273)
Q Consensus 250 ~~~~CPv~~~~ 260 (273)
+.=+||+|+.+
T Consensus 67 ddW~CPvCga~ 77 (87)
T 1s24_A 67 DDWCCPDCGAT 77 (87)
T ss_dssp TTCCCSSSCCC
T ss_pred CCCCCCCCCCC
Confidence 44589999964
No 122
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=58.00 E-value=2.8 Score=36.35 Aligned_cols=26 Identities=31% Similarity=0.843 Sum_probs=18.7
Q ss_pred CCCCCCCCCCCCCc-ccccccccccchhhH
Q 024073 216 RTICPLCSQKRANP-SVVTVSGFVFCYACI 244 (273)
Q Consensus 216 ~~~CpiC~~~~~np-~~l~~~G~vfCy~Ci 244 (273)
+..||+|+.. +. .+-. -|+.+|..|-
T Consensus 14 ~~~CP~Cg~~--d~~~~~~-dg~~~C~~Cg 40 (255)
T 1nui_A 14 HIPCDNCGSS--DGNSLFS-DGHTFCYVCE 40 (255)
T ss_dssp EECCSSSCCS--SCEEEET-TSCEEETTTC
T ss_pred CCcCCCCCCC--CCceEeC-CCCeecccCC
Confidence 5789999985 22 2223 6889999995
No 123
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=57.27 E-value=2.2 Score=39.63 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCc---ccccccccccchhhHHHHH
Q 024073 216 RTICPLCSQKRANP---SVVTVSGFVFCYACIFKYV 248 (273)
Q Consensus 216 ~~~CpiC~~~~~np---~~l~~~G~vfCy~Ci~~~~ 248 (273)
...|.+|.....-- .-|..||.|||..|....+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~ 410 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410 (434)
T ss_dssp ------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCee
Confidence 46799999976422 3555699999999997654
No 124
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=56.99 E-value=10 Score=25.23 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=5.4
Q ss_pred CCCCCCCCC
Q 024073 252 KRCPVTLMP 260 (273)
Q Consensus 252 ~~CPv~~~~ 260 (273)
=+||+|+.+
T Consensus 37 w~CP~Cg~~ 45 (52)
T 1e8j_A 37 WACPVCGAS 45 (52)
T ss_dssp CCCSSSCCC
T ss_pred CcCCCCCCc
Confidence 367777643
No 125
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=56.47 E-value=2.3 Score=31.30 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=8.2
Q ss_pred cCCCCCCCCCC
Q 024073 250 QYKRCPVTLMP 260 (273)
Q Consensus 250 ~~~~CPv~~~~ 260 (273)
+.=+||+|+.+
T Consensus 59 ddW~CPvCga~ 69 (81)
T 2kn9_A 59 DDWSCPDCGAA 69 (81)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 34489999964
No 126
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=54.64 E-value=3 Score=28.28 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=8.1
Q ss_pred cCCCCCCCCCC
Q 024073 250 QYKRCPVTLMP 260 (273)
Q Consensus 250 ~~~~CPv~~~~ 260 (273)
..=+||+|+.+
T Consensus 35 ~dw~CP~Cga~ 45 (55)
T 2v3b_B 35 ADWVCPDCGVG 45 (55)
T ss_dssp TTCCCTTTCCC
T ss_pred CCCcCCCCCCC
Confidence 34489999964
No 127
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.51 E-value=13 Score=25.30 Aligned_cols=35 Identities=14% Similarity=0.413 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHh
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS 249 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~ 249 (273)
+-..|..|.+.+.+......-|.+||..|-.+-++
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 32 GCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred cCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 35788888888876544445788898888776664
No 128
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=53.97 E-value=7.1 Score=25.28 Aligned_cols=24 Identities=29% Similarity=0.822 Sum_probs=14.3
Q ss_pred CCCCCCCCC-CCC-Cc----cccccccccc
Q 024073 216 RTICPLCSQ-KRA-NP----SVVTVSGFVF 239 (273)
Q Consensus 216 ~~~CpiC~~-~~~-np----~~l~~~G~vf 239 (273)
...||.|+. .+. |+ .+++.||.||
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 457999987 432 22 3555566655
No 129
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=53.72 E-value=13 Score=27.81 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=25.2
Q ss_pred CCCCCCCCCCCCCcccccc--cccccc----hhhHHHHHhc
Q 024073 216 RTICPLCSQKRANPSVVTV--SGFVFC----YACIFKYVSQ 250 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~--~G~vfC----y~Ci~~~~~~ 250 (273)
...|..|+..-.|-=++-+ ||||+| ..-+..+.++
T Consensus 25 ~~~C~~C~~~~~~lw~CL~~~Cg~vgCgr~~~~Ha~~H~~~ 65 (97)
T 2uzg_A 25 LGTCQDCKVQGPNLWACLENRCSYVGCGESQVDHSTIHSQE 65 (97)
T ss_dssp TTCCSSSCCCCSSCEEECCTTCCCEECCTTTTCHHHHHHHH
T ss_pred CCcCcCcCCCCCCceeeecccCCCcccCCCcChHHHHHhhh
Confidence 4579999976666545556 999999 5556666654
No 130
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=53.70 E-value=4.8 Score=28.50 Aligned_cols=13 Identities=31% Similarity=0.756 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRA 227 (273)
Q Consensus 215 ~~~~CpiC~~~~~ 227 (273)
+...||+|..++.
T Consensus 7 eiL~CP~ck~~L~ 19 (69)
T 2pk7_A 7 DILACPICKGPLK 19 (69)
T ss_dssp GTCCCTTTCCCCE
T ss_pred hheeCCCCCCcCe
Confidence 4568999999875
No 131
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=52.16 E-value=13 Score=25.65 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCCCcccccccccccch-hhHHHHHhcCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCY-ACIFKYVSQYKRCPVTLMPA 261 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy-~Ci~~~~~~~~~CPv~~~~~ 261 (273)
+-..|..|.+++.+-.....-|.+||. .|-.+-. ..+|-.|+...
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f--~~~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF--GPKGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS--SCCCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHh--CccCCCcCCce
Confidence 457899999999886444458999999 6976533 35799898544
No 132
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=50.52 E-value=19 Score=25.92 Aligned_cols=44 Identities=20% Similarity=0.488 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCCCC-cccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRAN-PSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~n-p~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
..+.|..|.+.+.- +-.+. ||.+||-. ++|.+. +.|+..-+.+.
T Consensus 24 ~~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~--HRy~e~-H~C~fDyk~~g 68 (74)
T 1wfl_A 24 KKNRCFMCRKKVGLTGFDCR-CGNLFCGL--HRYSDK-HNCPYDYKAEA 68 (74)
T ss_dssp CTTBCSSSCCBCGGGCEECT-TSCEECSS--SCSTTT-TTCCCCGGGTS
T ss_pred cCCcChhhCCcccccCeecC-CCCEechh--cCCCcc-CCCcchhhhhc
Confidence 35789999997543 46777 99999974 444433 46776654443
No 133
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=50.50 E-value=4.1 Score=30.81 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCc
Q 024073 251 YKRCPVTLMPATV 263 (273)
Q Consensus 251 ~~~CPv~~~~~~~ 263 (273)
.+.|||||.+++.
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4579999887764
No 134
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=49.33 E-value=3.6 Score=29.30 Aligned_cols=11 Identities=27% Similarity=0.507 Sum_probs=8.2
Q ss_pred cCCCCCCCCCC
Q 024073 250 QYKRCPVTLMP 260 (273)
Q Consensus 250 ~~~~CPv~~~~ 260 (273)
..=+||+|+.+
T Consensus 39 ddw~CP~Cga~ 49 (70)
T 1dx8_A 39 DSFMCPACRSP 49 (70)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 44489999964
No 135
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=48.40 E-value=6.2 Score=27.84 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRAN 228 (273)
Q Consensus 215 ~~~~CpiC~~~~~n 228 (273)
+...||+|..++.-
T Consensus 7 ~iL~CP~ck~~L~~ 20 (68)
T 2jr6_A 7 DILVCPVTKGRLEY 20 (68)
T ss_dssp CCCBCSSSCCBCEE
T ss_pred hheECCCCCCcCeE
Confidence 46789999997753
No 136
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=46.61 E-value=5.4 Score=28.17 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRAN 228 (273)
Q Consensus 215 ~~~~CpiC~~~~~n 228 (273)
+...||+|..++.-
T Consensus 7 ~iL~CP~ck~~L~~ 20 (68)
T 2hf1_A 7 EILVCPLCKGPLVF 20 (68)
T ss_dssp EECBCTTTCCBCEE
T ss_pred hheECCCCCCcCeE
Confidence 34689999987753
No 137
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=46.33 E-value=3.9 Score=27.33 Aligned_cols=11 Identities=27% Similarity=0.471 Sum_probs=7.9
Q ss_pred cCCCCCCCCCC
Q 024073 250 QYKRCPVTLMP 260 (273)
Q Consensus 250 ~~~~CPv~~~~ 260 (273)
..=+||+|+.+
T Consensus 34 ~dw~CP~Cg~~ 44 (52)
T 1yk4_A 34 DDWVCPLCGAP 44 (52)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 34489999964
No 138
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=45.89 E-value=6 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCccccccccc
Q 024073 216 RTICPLCSQKRANPSVVTVSGF 237 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~ 237 (273)
-..||-|++...--.+++.|||
T Consensus 30 l~~c~~cGe~~~~H~vc~~CG~ 51 (60)
T 3v2d_5 30 LVPCPECKAMKPPHTVCPECGY 51 (60)
T ss_dssp CEECTTTCCEECTTSCCTTTCE
T ss_pred eeECCCCCCeecceEEcCCCCc
Confidence 4579999997666677776775
No 139
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.44 E-value=11 Score=25.65 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=20.8
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHH
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIF 245 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~ 245 (273)
+-..|..|.+.+.+......-|.+||..|-.
T Consensus 34 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~ 64 (72)
T 1x4l_A 34 DCFNCKKCSLSLVGRGFLTERDDILCPDCGK 64 (72)
T ss_dssp TTCBCSSSCCBCTTSCCEECSSSEECHHHHH
T ss_pred ccCEeccCCCcCCCCccEeECCEEEChhHcC
Confidence 3467778887777655443477888877754
No 140
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=45.26 E-value=7.6 Score=26.74 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=16.0
Q ss_pred CCCCCCCCCCCCCccccccccc
Q 024073 216 RTICPLCSQKRANPSVVTVSGF 237 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~ 237 (273)
-..||.|++...--.+++.|||
T Consensus 30 l~~c~~cG~~~~pH~vc~~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGKKLSHHICPNCGY 51 (60)
T ss_dssp CEECTTTCCEECTTBCCTTTCB
T ss_pred ceECCCCCCEeCCceEcCCCCc
Confidence 4579999998655567776775
No 141
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=44.56 E-value=17 Score=29.97 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPA 261 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~ 261 (273)
+-..|..|...+.+......-|.+||..|-.+-+ ..+|-.|++++
T Consensus 141 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f--~~kc~~C~~~~ 185 (192)
T 1b8t_A 141 SCFRCAKCGKSLESTTLADKDGEIYCKGCYAKNF--GPKGFGFGQGA 185 (192)
T ss_dssp TTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHT--CCCCCCCCCCC
T ss_pred hcCCccccCCCCCCCcccccCCEEeCHHHHHHhc--CCcCCCCCCcc
Confidence 3577888888887654344589999998877654 35788998874
No 142
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.53 E-value=43 Score=23.41 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCCcC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPATVE 264 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~~~ 264 (273)
..+|..|.+.|...-.+..-|.+|-..| -+|-.|+.++...
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~C--------F~C~~C~~~L~~~ 55 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSC--------FRCHTCEATLWPG 55 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTT--------CBCSSSCCBCCTT
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCc--------CEEcCCCCCcCCC
Confidence 5689999999865432323554444333 2456677666543
No 143
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=44.24 E-value=15 Score=34.48 Aligned_cols=43 Identities=16% Similarity=0.461 Sum_probs=32.6
Q ss_pred CCCCCCCCCCCCCccccc--ccccccchhhHHHHHh----------cCCCCCCCCC
Q 024073 216 RTICPLCSQKRANPSVVT--VSGFVFCYACIFKYVS----------QYKRCPVTLM 259 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~--~~G~vfCy~Ci~~~~~----------~~~~CPv~~~ 259 (273)
...|-+|.+.- +=..|. .|..+||..||...+- ..=.|=+|.-
T Consensus 93 ~~yCr~C~~Gg-~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p 147 (386)
T 2pv0_B 93 QSYCSICCSGE-TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP 147 (386)
T ss_dssp BCSCTTTCCCS-SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred cccceEcCCCC-eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence 56899999865 334555 6999999999999882 2347888873
No 144
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=43.83 E-value=5.5 Score=32.29 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=7.3
Q ss_pred CCCCCCCCCC
Q 024073 252 KRCPVTLMPA 261 (273)
Q Consensus 252 ~~CPv~~~~~ 261 (273)
..||.||.++
T Consensus 149 ~~Cp~CG~~~ 158 (165)
T 2lcq_A 149 GVCPDCGSKV 158 (165)
T ss_dssp GBCTTTCCBE
T ss_pred CcCCCCCCcc
Confidence 4788888653
No 145
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=42.98 E-value=49 Score=23.22 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=28.2
Q ss_pred CCCCCCCCCCCCCCc---------------ccccccccccchh-hHHHHHhcC-----CCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANP---------------SVVTVSGFVFCYA-CIFKYVSQY-----KRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np---------------~~l~~~G~vfCy~-Ci~~~~~~~-----~~CPv~~~~~~ 262 (273)
....|++|.+...+. -.+..||..|-.. -+..++..+ -+|++|++...
T Consensus 16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 84 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCS
T ss_pred cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCccc
Confidence 357899998876543 3445566666433 233344333 37888887654
No 146
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=42.80 E-value=8.9 Score=29.43 Aligned_cols=34 Identities=15% Similarity=0.243 Sum_probs=23.0
Q ss_pred CCCCCCCCCCCCCcccccccccccch----hhHHHHHhc
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCY----ACIFKYVSQ 250 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy----~Ci~~~~~~ 250 (273)
...|..|+..-..-.-+ +||||+|- .-+.++.++
T Consensus 24 ~~~C~~C~~~~~~W~CL-~CG~vgCgr~~~~HA~~H~~~ 61 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCL-SCYQVYCGRYINGHMLQHHGN 61 (109)
T ss_dssp TCCCTTTCCCSSEEEET-TTCCEEECTTTTCHHHHHHHH
T ss_pred CCcCccccCCCCeeeee-ecCccccCCCcChHHHHHhcc
Confidence 45799999875544444 59999993 445555543
No 147
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=42.20 E-value=12 Score=26.33 Aligned_cols=14 Identities=14% Similarity=0.161 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRAN 228 (273)
Q Consensus 215 ~~~~CpiC~~~~~n 228 (273)
+...||+|..++.-
T Consensus 9 eiL~CP~ck~~L~~ 22 (67)
T 2jny_A 9 EVLACPKDKGPLRY 22 (67)
T ss_dssp CCCBCTTTCCBCEE
T ss_pred HHhCCCCCCCcCeE
Confidence 46789999998754
No 148
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.10 E-value=19 Score=24.22 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHH
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 248 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~ 248 (273)
-..|..|.+++.+......-|.+||..|-.+.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 466777777776554333467777777765443
No 149
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.64 E-value=25 Score=24.53 Aligned_cols=29 Identities=21% Similarity=0.606 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhH
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACI 244 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci 244 (273)
+-..|..|.+++.+-.. ..-|.+||-.|-
T Consensus 40 ~CF~C~~C~~~L~~~~f-~~~g~~yC~~cy 68 (79)
T 2cor_A 40 DHFNCANCGKELTADAR-ELKGELYCLPCH 68 (79)
T ss_dssp TTSBCSSSCCBCCTTCE-EETTEEECHHHH
T ss_pred CCCEeCCCCCccCCCCE-eECCEEeCHHHH
Confidence 34667777776665543 346777776663
No 150
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.76 E-value=18 Score=24.32 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=17.9
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHH
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~ 247 (273)
-..|..|.+++.+-.....-|.+||..|-.+-
T Consensus 31 CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 31 CFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp TSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 45666666666654333335666666665443
No 151
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.56 E-value=28 Score=24.13 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
...|.-|.++|....+ ..-|.+|-..| -+|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~~-~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFV-KLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCSSCE-ECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccCcEE-EECcceeCcCc--------CeeCCCCCCCC
Confidence 4578888888877543 33665554433 25666766653
No 152
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase; 1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Probab=39.12 E-value=21 Score=28.23 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCcccccccccccc
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFC 240 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfC 240 (273)
+...|..|...- |--++-+||||.|
T Consensus 33 ~~~~C~~C~~~~-~LwlCL~CG~vgC 57 (129)
T 2g45_A 33 CGWKCSKCDMRE-NLWLNLTDGSILC 57 (129)
T ss_dssp CBCCCSSSSCCS-SEEEETTTCCEEE
T ss_pred CCCcCccccCcC-ceEEeccCCcccc
Confidence 455799998774 4445555999999
No 153
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.67 E-value=23 Score=24.56 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=32.2
Q ss_pred CCCCCCC--CCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 215 DRTICPL--CSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~Cpi--C~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
....|.. |.+.--.|..+..||.+||-. +++- +.+.|+--..++.
T Consensus 11 ~~~~Cs~~~Ck~~~ll~f~C~~C~~~FC~~--HR~~-e~H~C~~~~~~~~ 57 (63)
T 1x4v_A 11 FTNKCERAGCRQREMMKLTCERCSRNFCIK--HRHP-LDHDCSGEGHPTS 57 (63)
T ss_dssp TCCCCCSTTCCCCCSSCCBCSSSCCBCCHH--HHST-TSSCCCSTTSCCC
T ss_pred cCCCCCccCCCCCCccceECCCCCcccCcc--cCCc-cCCcCCCCCCccc
Confidence 3568999 998866788888899999973 5544 4457876554443
No 154
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=38.66 E-value=21 Score=20.76 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCcccccccccccchhh
Q 024073 217 TICPLCSQKRANPSVVTVSGFVFCYAC 243 (273)
Q Consensus 217 ~~CpiC~~~~~np~~l~~~G~vfCy~C 243 (273)
..|+.|++.+--.--+..-|.+|...|
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~C 30 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKAC 30 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGG
T ss_pred CcCCccCCEEecceeEEECCeEecccC
Confidence 478888887764432223676666555
No 155
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.50 E-value=24 Score=25.17 Aligned_cols=38 Identities=18% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
..+|..|.++|.+..+.. -|.+|-..|. +|-.|+.++.
T Consensus 25 ~~~C~~C~~~I~~~~v~a-~~~~~H~~CF--------~C~~C~~~L~ 62 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVA-LGKSWHPEEF--------NCAHCKNTMA 62 (90)
T ss_dssp CCBBSSSCCBCCSCEEEE-TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCccCCCEecceEEEE-CCccccccCC--------ccCCCCCCCC
Confidence 346777777776554443 5655555442 4556666554
No 156
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=38.32 E-value=16 Score=24.38 Aligned_cols=30 Identities=30% Similarity=0.722 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCCcccccccccccc-hhhH
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFC-YACI 244 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfC-y~Ci 244 (273)
+-..|..|.+++.+......-|.+|| .+|-
T Consensus 31 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~~C~ 61 (65)
T 2iyb_E 31 ECFLCSCCSKCLIGQKFMPVEGMVFCSVECK 61 (65)
T ss_dssp TTSBCTTTCCBCTTSCCEEETTEEESSHHHH
T ss_pred CCEECCCCCCcCCCCceEEECCEEecCHHHh
Confidence 45677777777766543344677777 6664
No 157
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=38.26 E-value=9.1 Score=27.11 Aligned_cols=13 Identities=31% Similarity=0.925 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRA 227 (273)
Q Consensus 215 ~~~~CpiC~~~~~ 227 (273)
+...||+|..++.
T Consensus 7 ~iL~CP~ck~~L~ 19 (70)
T 2js4_A 7 DILVCPVCKGRLE 19 (70)
T ss_dssp CCCBCTTTCCBEE
T ss_pred hheECCCCCCcCE
Confidence 4678999999765
No 158
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=37.85 E-value=18 Score=23.99 Aligned_cols=30 Identities=13% Similarity=0.351 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHH
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIF 245 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~ 245 (273)
-..|..|.+++.+......-|.+||..|-.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 60 (66)
T 1nyp_A 31 HFVCAKCEKPFLGHRHYERKGLAYCETHYN 60 (66)
T ss_dssp TCBCTTTCCBCSSSCCEEETTEEECHHHHH
T ss_pred cCEECCCCCCCCCCceEeECCcEECHHHHH
Confidence 456777777766543333467777776654
No 159
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.69 E-value=21 Score=23.93 Aligned_cols=33 Identities=15% Similarity=0.605 Sum_probs=23.3
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHH
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~ 247 (273)
+-..|..|.+++.+......-|.+||..|-.+-
T Consensus 30 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 30 ECFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 357788888888765443447888888886543
No 160
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=37.51 E-value=44 Score=23.02 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=33.7
Q ss_pred CCCCCCCCCCCCCCCCcccccccccccchhhHHHHHhc----CCCCCCCCCC
Q 024073 213 PPDRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ----YKRCPVTLMP 260 (273)
Q Consensus 213 p~~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~----~~~CPv~~~~ 260 (273)
+.....|-+|++. .+-..+..|..+|-..|+.--+.. .=.||.|...
T Consensus 9 ~~~~~~C~vC~~~-~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 9 LAPGARCGVCGDG-TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCTTCCCTTTSCC-TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCCcCCCCCC-CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 3445689999875 334566779999999998655543 2489999753
No 161
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.92 E-value=13 Score=25.58 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCcccccccccccchhhH
Q 024073 217 TICPLCSQKRANPSVVTVSGFVFCYACI 244 (273)
Q Consensus 217 ~~CpiC~~~~~np~~l~~~G~vfCy~Ci 244 (273)
..|..|.+.+.+......-|.+||..|-
T Consensus 36 F~C~~C~~~L~~~~f~~~~g~~yC~~cy 63 (76)
T 1x68_A 36 FNCGKCSVSLVGKGFLTQNKEIFCQKCG 63 (76)
T ss_dssp CBCTTTCCBCSSSCEEEETTEEEETTTT
T ss_pred CChhhCCCcCCCCceEeECCEEECHHHh
Confidence 4566666655544322235666665553
No 162
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=36.42 E-value=16 Score=33.42 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCC----CcccccccccccchhhHHHHHhcCCCCCCCC
Q 024073 215 DRTICPLCSQKRA----NPSVVTVSGFVFCYACIFKYVSQYKRCPVTL 258 (273)
Q Consensus 215 ~~~~CpiC~~~~~----np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~ 258 (273)
....|-.|++.+. .---|..||+++|..|....- .|+...
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~----~C~~~~ 399 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP----PCGRHG 399 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC----CC----
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC----CCCCCc
Confidence 3578999999764 234677799999999987332 266543
No 163
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.84 E-value=20 Score=24.19 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHH
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~ 247 (273)
+-..|..|.+++.+......-|.+||..|-.+-
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 64 (72)
T 1wyh_A 32 HCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENK 64 (72)
T ss_dssp TTCBCTTTCCBTTTSCEEEETTEEEEHHHHHHH
T ss_pred ccCeECCCCCcCCCCccCCcCCeEECHHHHHHH
Confidence 346788888887765433447888888776543
No 164
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.66 E-value=24 Score=25.94 Aligned_cols=39 Identities=15% Similarity=0.381 Sum_probs=29.2
Q ss_pred CCCCCCC--CCCCCCCcccccccccccchhhHHHHHhcCCCCCC
Q 024073 215 DRTICPL--CSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPV 256 (273)
Q Consensus 215 ~~~~Cpi--C~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv 256 (273)
....|.. |.+....|..+..||.+||-. +++-+. +.|+-
T Consensus 24 ~~~~C~~~~Ck~~~~l~f~C~~C~~~FC~~--HR~~e~-H~C~~ 64 (86)
T 1wfe_A 24 KSYSCSFKGCTDVELVAVICPYCEKNFCLR--HRHQSD-HDCEK 64 (86)
T ss_dssp CCEECCSTTCCCEESSCEECTTTCCEECGG--GCSTGG-GTCSS
T ss_pred CCCCCCCcCCCCCCccceECCCCCcccccc--cCCccC-CCCCC
Confidence 4568999 999877888898899999974 444433 46764
No 165
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=35.40 E-value=15 Score=24.73 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRA 227 (273)
Q Consensus 215 ~~~~CpiC~~~~~ 227 (273)
+-..||+|..++.
T Consensus 9 ~iL~CP~c~~~L~ 21 (56)
T 2kpi_A 9 EILACPACHAPLE 21 (56)
T ss_dssp TSCCCSSSCSCEE
T ss_pred hheeCCCCCCcce
Confidence 4668999999764
No 166
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=35.02 E-value=11 Score=31.87 Aligned_cols=30 Identities=13% Similarity=0.397 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCCcc-cccccccccchhhHH
Q 024073 215 DRTICPLCSQKRANPS-VVTVSGFVFCYACIF 245 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~-~l~~~G~vfCy~Ci~ 245 (273)
....|++|++..-++- .+. -|-..|.+|..
T Consensus 171 ~~~~C~~CGE~~~~~~~~~~-~g~~~C~~C~~ 201 (204)
T 2gvi_A 171 AKVRCDVCGEYTYEADAKLL-NGKPVCKPDYY 201 (204)
T ss_dssp CEEECTTTCCEEEGGGCEEE-TTEEECHHHHH
T ss_pred CceECCCCCCchhhcceeee-CCcEEChhhhc
Confidence 3678999999877763 444 79999999974
No 167
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=34.01 E-value=7.5 Score=22.34 Aligned_cols=7 Identities=43% Similarity=0.809 Sum_probs=3.2
Q ss_pred CCCCCCC
Q 024073 254 CPVTLMP 260 (273)
Q Consensus 254 CPv~~~~ 260 (273)
||||.+.
T Consensus 9 cpvcqq~ 15 (29)
T 3vhs_A 9 CPVCQQM 15 (29)
T ss_dssp CTTTCCE
T ss_pred ChHHHHh
Confidence 4444443
No 168
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=33.98 E-value=15 Score=26.41 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=24.5
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcC-----CCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~-----~~CPv~~~~~~ 262 (273)
....|++|++.......+. ..++.+ -.|++|++...
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~------------~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQE------------RHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp TTEECTTSCCEESSHHHHH------------HHHHTTSCSSSEECTTSSCEES
T ss_pred CCEECCCCCCCcCcHHHHh------------hhhhhccCCCccCCCCCCCEeC
Confidence 4578999999888776553 233322 36999998754
No 169
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=33.54 E-value=22 Score=23.99 Aligned_cols=9 Identities=33% Similarity=0.748 Sum_probs=7.2
Q ss_pred CCCCCCCCC
Q 024073 216 RTICPLCSQ 224 (273)
Q Consensus 216 ~~~CpiC~~ 224 (273)
...||.|+.
T Consensus 11 ~~~Cp~C~~ 19 (58)
T 1dl6_A 11 RVTCPNHPD 19 (58)
T ss_dssp CCSBTTBSS
T ss_pred cccCcCCCC
Confidence 457999986
No 170
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=33.19 E-value=25 Score=24.02 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=11.6
Q ss_pred CCCCCCCCCCCCcccccccccccchhh
Q 024073 217 TICPLCSQKRANPSVVTVSGFVFCYAC 243 (273)
Q Consensus 217 ~~CpiC~~~~~np~~l~~~G~vfCy~C 243 (273)
..|..|.+.+.+......-|.+||-.|
T Consensus 47 F~C~~C~~~L~~~~f~~~~~~~yC~~c 73 (77)
T 2egq_A 47 FHCKKCSVNLANKRFVFHQEQVYCPDC 73 (77)
T ss_dssp CBCSSSCCBCTTSCCCEETTEECCHHH
T ss_pred CEehhcCCCCCCCccEeECCEEEChHH
Confidence 444445444443322222444454444
No 171
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.75 E-value=31 Score=24.44 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHH
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 248 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~ 248 (273)
-+.|-.|.+.+.+-.....-|.+||..|-.+-+
T Consensus 51 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 83 (89)
T 1x64_A 51 CFVCADCNLNLKQKGYFFVEGELYCETHARART 83 (89)
T ss_dssp TCCCSSSCCCTTTSCCEEETTEEECHHHHHHHS
T ss_pred CCEecCCCCCCCCCCeEeECCEEECHHHHHHHh
Confidence 478999999998754333489999999986654
No 172
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=32.67 E-value=16 Score=22.49 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=15.4
Q ss_pred CCCCCCCCCCcccccccccccchhh
Q 024073 219 CPLCSQKRANPSVVTVSGFVFCYAC 243 (273)
Q Consensus 219 CpiC~~~~~np~~l~~~G~vfCy~C 243 (273)
=|+|+++-...--+ +|--||-.|
T Consensus 5 D~~C~KPC~T~DDC--S~gw~CqaC 27 (38)
T 4cpa_I 5 DPICNKPCKTHDDC--SGAWFCQAC 27 (38)
T ss_dssp CTTTTCBCSSSSSS--CCCSSCCEE
T ss_pred ccccCCCccCcccc--ccchHHHHH
Confidence 37788876655444 566688776
No 173
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.28 E-value=35 Score=24.31 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHH
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYV 248 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~ 248 (273)
-..|-.|.+.+.+-.....-|.+||..|-.+-+
T Consensus 42 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f 74 (91)
T 2d8y_A 42 CFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLF 74 (91)
T ss_dssp TCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHS
T ss_pred CCeeCCCCCCCCCCCcEeECCEEECHHHHHHHh
Confidence 466777777776653333467777777765443
No 174
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.27 E-value=31 Score=23.60 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=23.6
Q ss_pred CCCCCCCCCCCCC-CcccccccccccchhhHHHHHh
Q 024073 215 DRTICPLCSQKRA-NPSVVTVSGFVFCYACIFKYVS 249 (273)
Q Consensus 215 ~~~~CpiC~~~~~-np~~l~~~G~vfCy~Ci~~~~~ 249 (273)
+-..|..|.+++. +......-|.+||..|-.+...
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSS
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhc
Confidence 4578888888887 3333333788888888765443
No 175
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.93 E-value=27 Score=23.46 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=19.4
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHH
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFK 246 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~ 246 (273)
-..|..|.+.+.+......-|.+||..|-.+
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 33 CFICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63 (72)
T ss_dssp TTCCSSSCCCCCSSSEEEETTEEEEHHHHHH
T ss_pred CCcccccCCccCCCccCccCCeEECHHHHhH
Confidence 4667777777766543334677777776544
No 176
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.67 E-value=27 Score=23.88 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCcccccccccccch-hhHHH
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCY-ACIFK 246 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy-~Ci~~ 246 (273)
-..|..|.+++.+......-|.+||. +|-.+
T Consensus 36 CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 36 CLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp TCBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 45667777766654333336677776 56543
No 177
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.16 E-value=32 Score=23.66 Aligned_cols=33 Identities=18% Similarity=0.411 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHH
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~ 247 (273)
+-..|..|.+++.+......-|.+||..|-.+-
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 40 ECLVCTGCQTPLAGQQFTSRDEDPYCVACFGEL 72 (80)
T ss_dssp TTCBCSSSCCBCTTCCEEECSSSEEEHHHHHHH
T ss_pred hhCCcccCCCcCCCCeeEeECCEEECHHHHHHH
Confidence 356788888888654433447888888876544
No 178
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.90 E-value=18 Score=25.19 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhc
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ 250 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~ 250 (273)
+-+.|..|.+.+.+......-|.+||..|-.+-+..
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~~p 75 (79)
T 1x62_A 40 ECYVCTDCGTNLKQKGHFFVEDQIYCEKHARERVSG 75 (79)
T ss_dssp TTTSCSSSCCCHHHHCCEESSSCEECHHHHHHHHSS
T ss_pred CcCeeCCCCCCCCCCCeEeECCEEECHHHHHHHhCC
Confidence 357899999999765433458999999998766543
No 179
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=29.76 E-value=29 Score=28.48 Aligned_cols=43 Identities=19% Similarity=0.370 Sum_probs=30.4
Q ss_pred CCCCCCCCCCCCCccccc--ccccccchhhHHHHHhc----------CCCCCCCCC
Q 024073 216 RTICPLCSQKRANPSVVT--VSGFVFCYACIFKYVSQ----------YKRCPVTLM 259 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~--~~G~vfCy~Ci~~~~~~----------~~~CPv~~~ 259 (273)
...|-+|.+.- +=..+. .|-.+||..||...+-. .=.|=+|.-
T Consensus 79 ~~yC~wC~~Gg-~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGGR-EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCCS-EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCCC-eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 56899999864 222333 47799999999988842 236888873
No 180
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.94 E-value=36 Score=23.51 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHH
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFK 246 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~ 246 (273)
-..|..|.+++.+-.....-|.+||..|-.+
T Consensus 43 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 73 (82)
T 1x63_A 43 CFTCSNCKQVIGTGSFFPKGEDFYCVTCHET 73 (82)
T ss_dssp TCCCSSSCCCCTTSCEEEETTEEEEHHHHHH
T ss_pred cCchhhCCCccCCCccEeeCCEEECHHHHHH
Confidence 3556666666655432223566666655543
No 181
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.57 E-value=22 Score=23.36 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=8.2
Q ss_pred CCCCCCCCCCC
Q 024073 215 DRTICPLCSQK 225 (273)
Q Consensus 215 ~~~~CpiC~~~ 225 (273)
....||-|+..
T Consensus 18 ~~k~CP~CG~~ 28 (50)
T 3j20_Y 18 KNKFCPRCGPG 28 (50)
T ss_dssp SSEECSSSCSS
T ss_pred ecccCCCCCCc
Confidence 35679999874
No 182
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=28.54 E-value=52 Score=21.54 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=7.2
Q ss_pred CCCCCCCCCC
Q 024073 252 KRCPVTLMPA 261 (273)
Q Consensus 252 ~~CPv~~~~~ 261 (273)
-+||.||...
T Consensus 24 IrCpyCGyri 33 (48)
T 4ayb_P 24 VRCPYCGYKI 33 (48)
T ss_dssp SCCTTTCCSC
T ss_pred cccCccCcEE
Confidence 4888888653
No 183
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.12 E-value=25 Score=28.51 Aligned_cols=30 Identities=23% Similarity=0.451 Sum_probs=23.5
Q ss_pred CCCCCCCCCC---CCCc-ccccccccccchhhHH
Q 024073 216 RTICPLCSQK---RANP-SVVTVSGFVFCYACIF 245 (273)
Q Consensus 216 ~~~CpiC~~~---~~np-~~l~~~G~vfCy~Ci~ 245 (273)
...|.+|.++ +.|. .+|..|.|-+|-.|-.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~ 101 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH 101 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc
Confidence 4689999997 3344 5777799999999983
No 184
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=27.97 E-value=25 Score=27.85 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCCCCCCCCCCC---Cc-ccccccccccchhhHH
Q 024073 216 RTICPLCSQKRA---NP-SVVTVSGFVFCYACIF 245 (273)
Q Consensus 216 ~~~CpiC~~~~~---np-~~l~~~G~vfCy~Ci~ 245 (273)
...|.+|.+++. |. .++..|.|-+|-.|-.
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 468999999873 22 4666688888888865
No 185
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=27.79 E-value=33 Score=35.15 Aligned_cols=36 Identities=14% Similarity=0.212 Sum_probs=25.4
Q ss_pred CCCCCCCCCCCCCCcccccccccccch----------hhHHHHHhcC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCY----------ACIFKYVSQY 251 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy----------~Ci~~~~~~~ 251 (273)
....|..|+... |-=+|-+||||.|- ..+..+.++.
T Consensus 214 ~~~~C~~c~~~~-~lw~CL~Cg~vgC~r~~~~~~~~~~ha~~H~~~~ 259 (854)
T 3ihp_A 214 CGWKCSKCDMRE-NLWLNLTDGSILCGRRYFDGSGGNNHAVEHYRET 259 (854)
T ss_dssp SCCCCSSSCCCS-SEEEETTTCCEEECCBC-CCCBCCSHHHHHHHHH
T ss_pred CCCcCcCcCCcC-ceEEEecCCCccccccccCCCCCchHHHHHHhhc
Confidence 456899999876 44344459999995 4666666543
No 186
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.78 E-value=39 Score=23.19 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHH
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~ 247 (273)
+-..|..|.+++.+......-|.+||..|-.+-
T Consensus 40 ~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 40 ECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp TTCBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CcCChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 356778888877764433347788887776543
No 187
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=27.23 E-value=11 Score=27.61 Aligned_cols=14 Identities=21% Similarity=0.634 Sum_probs=10.0
Q ss_pred CCCCCCCCCC-CCCc
Q 024073 216 RTICPLCSQK-RANP 229 (273)
Q Consensus 216 ~~~CpiC~~~-~~np 229 (273)
...||-|+.. +.++
T Consensus 27 ~y~Cp~CG~~~v~r~ 41 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQ 41 (83)
T ss_dssp CEECSSSCCEEEEEE
T ss_pred cCcCCCCCCcceecc
Confidence 5689999984 4444
No 188
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.00 E-value=24 Score=23.50 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=6.7
Q ss_pred CCCCCCCCCCC
Q 024073 217 TICPLCSQKRA 227 (273)
Q Consensus 217 ~~CpiC~~~~~ 227 (273)
..|.-|+++|.
T Consensus 12 ~~C~~C~~~i~ 22 (72)
T 3f6q_B 12 ATCERCKGGFA 22 (72)
T ss_dssp CBCTTTCCBCC
T ss_pred ccchhcCcccc
Confidence 45666666665
No 189
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=26.64 E-value=27 Score=26.74 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCcCCeeeC
Q 024073 251 YKRCPVTLMPATVEQIRRL 269 (273)
Q Consensus 251 ~~~CPv~~~~~~~~~l~ri 269 (273)
.|+||+|...+....++||
T Consensus 29 dGkC~iCDs~Vrp~~~VrI 47 (109)
T 2k0a_A 29 DGKCPICDSYVRPKRKVRV 47 (109)
T ss_dssp TTCCTTTCCCCCCCEECEE
T ss_pred CCcccccCCccCCcceEEE
Confidence 6899999987777777776
No 190
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.13 E-value=26 Score=24.37 Aligned_cols=29 Identities=17% Similarity=0.398 Sum_probs=16.8
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhH
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACI 244 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci 244 (273)
-..|..|.+.+.+......-|.+||..|-
T Consensus 43 CF~C~~C~~~L~~~~f~~~~~~~~C~~c~ 71 (82)
T 2ehe_A 43 CFRCCRCQRSLADEPFTCQDSELLCNDCY 71 (82)
T ss_dssp TSBCTTTCCBCSSCCEEEETTEEEETTTS
T ss_pred CCeecCCCCccCCCccEeeCCEEECHHHH
Confidence 45666666666654333336666666664
No 191
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=25.97 E-value=26 Score=22.01 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCCcccccccccccchhhHHHHHhcC-----CCCCCCCCCCC
Q 024073 217 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLMPAT 262 (273)
Q Consensus 217 ~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~-----~~CPv~~~~~~ 262 (273)
..|++|++...+...+. ..++.+ -.|++|++...
T Consensus 3 ~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLK------------RHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp BCCTTTCCCBSCHHHHH------------HHHHTTTSSCSEECTTTCCEES
T ss_pred CcCCCCccccCCHHHHH------------HHHHHhCCCCCccCCCCCCccC
Confidence 57888888877765443 222222 36999987654
No 192
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.90 E-value=32 Score=23.38 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=16.2
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHH
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIF 245 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~ 245 (273)
-..|..|.+++.+-.....-|.+||..|-.
T Consensus 39 CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 68 (77)
T 1g47_A 39 CFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68 (77)
T ss_dssp TCCCTTTCCCCGGGCSEEETTEEECHHHHH
T ss_pred cCeECCCCCCCCCCCeEeECCeEeCHHHHH
Confidence 355666666665543223356666666543
No 193
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.26 E-value=98 Score=22.90 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=28.6
Q ss_pred CCCCCCCCCCCCCC--cccccccccccchhhHHHHHhcCC
Q 024073 215 DRTICPLCSQKRAN--PSVVTVSGFVFCYACIFKYVSQYK 252 (273)
Q Consensus 215 ~~~~CpiC~~~~~n--p~~l~~~G~vfCy~Ci~~~~~~~~ 252 (273)
+-..|..|.+++.+ ......-|.+||-.|-.+-+....
T Consensus 29 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~~c 68 (114)
T 1j2o_A 29 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGSGG 68 (114)
T ss_dssp TTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTSCC
T ss_pred hcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCccc
Confidence 46889999999975 233345899999999887776543
No 194
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=25.20 E-value=16 Score=26.92 Aligned_cols=12 Identities=25% Similarity=0.766 Sum_probs=9.3
Q ss_pred CCCCCCCCCCCC
Q 024073 216 RTICPLCSQKRA 227 (273)
Q Consensus 216 ~~~CpiC~~~~~ 227 (273)
...||||+.++.
T Consensus 8 ~~~~PlCG~~L~ 19 (95)
T 2k5c_A 8 MAKCPICGSPLK 19 (95)
T ss_dssp CEECSSSCCEEC
T ss_pred cccCCcCCCccC
Confidence 357999999754
No 195
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=24.93 E-value=81 Score=23.72 Aligned_cols=36 Identities=11% Similarity=0.358 Sum_probs=26.9
Q ss_pred CCCCCCCCCCCCC-CcccccccccccchhhHHHHHhc
Q 024073 215 DRTICPLCSQKRA-NPSVVTVSGFVFCYACIFKYVSQ 250 (273)
Q Consensus 215 ~~~~CpiC~~~~~-np~~l~~~G~vfCy~Ci~~~~~~ 250 (273)
+-+.|-.|.+.+. .......-|.+||..|-.+.+..
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 4688999999994 33333348999999999887753
No 196
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.68 E-value=40 Score=23.89 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCC-CcccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRA-NPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~-np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
..+.|++|++... ....+. -|+- ++.-.++.-.|++|++...
T Consensus 23 ~~~~C~~C~k~f~~~~~~L~--~H~~----~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGLK--KHME----VCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHHH--HHHH----HHHHHHHHHSCSSSCCCCS
T ss_pred CCcCCCCCCCChhhhHHHHH--HHHH----HHcCCCCCEECCCCCCccC
Confidence 3578999999988 665443 2221 0100022347888887654
No 197
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=24.68 E-value=64 Score=23.02 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=30.8
Q ss_pred CCCCCCCCC--CCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCC
Q 024073 213 PPDRTICPL--CSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLM 259 (273)
Q Consensus 213 p~~~~~Cpi--C~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~ 259 (273)
|.-...|.. |.+.---|..+..||.+||-. +++- +.+.||--..
T Consensus 11 ~~~g~~Cs~~~C~~~dflpf~C~~C~~~FC~~--HR~~-e~H~C~~~~~ 56 (75)
T 1wys_A 11 LDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLE--HRSK-DSHGCSEVNV 56 (75)
T ss_dssp CCCCCCCSCTTTCCCSCCCEECTTTCCEECST--TCSS-GGGTCCCCSS
T ss_pred cccCCCcCcccCCCccceeeECcccCcCcCcc--cCCc-cccCCCCCcc
Confidence 444678988 999866688888899999974 3333 3357875543
No 198
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=24.51 E-value=49 Score=22.75 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=11.4
Q ss_pred CCCCCCCCCCC-CCCc
Q 024073 215 DRTICPLCSQK-RANP 229 (273)
Q Consensus 215 ~~~~CpiC~~~-~~np 229 (273)
|..+|.||.+. +.|-
T Consensus 8 d~~~C~iC~KTKFADG 23 (62)
T 2a20_A 8 DAPTCGICHKTKFADG 23 (62)
T ss_dssp CCCCCSSSSCSCCCSS
T ss_pred CcchhhhhccceeccC
Confidence 67899999984 5444
No 199
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=24.49 E-value=31 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=31.5
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhc----CCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQ----YKRCPVTLMPA 261 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~----~~~CPv~~~~~ 261 (273)
+...|.+|++. .+-..|..|..+|...|+..-+.. .=.||.|....
T Consensus 3 ~~~~C~~C~~~-g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG-GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC-SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC-CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35679999976 333456668888888887554432 34799998644
No 200
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.19 E-value=26 Score=23.16 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=24.3
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHH-hcCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV-SQYKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~-~~~~~CPv~~~~~~ 262 (273)
....|++|++.......+. -|+- ..- ++.-.|++|++...
T Consensus 16 ~~~~C~~C~k~f~~~~~l~--~H~~------~H~~~~~~~C~~C~k~f~ 56 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLA--SHKT------VHTGEKPYRCNICGAQFN 56 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHH--HHHH------HHCCCCSEECTTTCCEES
T ss_pred CCeECCCCCceeCCHHHHH--HHHH------HcCCCCCEECCCCCchhC
Confidence 3578999999988776553 2210 011 11237999987654
No 201
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.85 E-value=28 Score=26.63 Aligned_cols=10 Identities=10% Similarity=-0.064 Sum_probs=7.7
Q ss_pred CC-CCCCCCCC
Q 024073 251 YK-RCPVTLMP 260 (273)
Q Consensus 251 ~~-~CPv~~~~ 260 (273)
.. .||.|+.+
T Consensus 89 ~~~~CP~Cgs~ 99 (119)
T 2kdx_A 89 DYGVCEKCHSK 99 (119)
T ss_dssp TTCCCSSSSSC
T ss_pred CCCcCccccCC
Confidence 45 89999866
No 202
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=23.48 E-value=9.9 Score=37.11 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCCCcc-ccc-----ccccccchhhHHHHHhcCCCCCCCC-----CCCCcCCeeeCcc
Q 024073 215 DRTICPLCSQKRANPS-VVT-----VSGFVFCYACIFKYVSQYKRCPVTL-----MPATVEQIRRLFH 271 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~-~l~-----~~G~vfCy~Ci~~~~~~~~~CPv~~-----~~~~~~~l~ri~~ 271 (273)
+...|.+|...+=|-. ++. ..+.|||..|+.+. |+.+. ...+.++|..+|.
T Consensus 457 ~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~------~~~l~~~~v~~ry~~eeL~~~yd 518 (531)
T 3avr_A 457 PAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKT------SGNLENFVVLEQYKMEDLMQVYD 518 (531)
T ss_dssp CCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHH------CTTCTTCEEEECSCHHHHHHHHH
T ss_pred CCeeccccchhheeeEEEEecCCCCCCCCcCChhhhhhc------CccccceEEEEEcCHHHHHHHHH
Confidence 3568999999887775 331 13569999999962 33333 3456777776664
No 203
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=23.44 E-value=37 Score=21.06 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHh-c-----CCCCCCCCCCCC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVS-Q-----YKRCPVTLMPAT 262 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~-~-----~~~CPv~~~~~~ 262 (273)
...|++|.+.......+. .+++ . .-.|++|++...
T Consensus 12 ~~~C~~C~k~f~~~~~L~------------~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 12 PYICQSCGKGFSRPDHLN------------GHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp CEECSSSCCEESSHHHHH------------HHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CeECCCCCcccCCHHHHH------------HHHHHhcCCCCCccCCCCCCCCC
Confidence 468999988877765543 2332 2 248999997654
No 204
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.79 E-value=39 Score=16.99 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCcccc
Q 024073 217 TICPLCSQKRANPSVV 232 (273)
Q Consensus 217 ~~CpiC~~~~~np~~l 232 (273)
..|+.|++.......+
T Consensus 3 ~~C~~C~~~f~~~~~l 18 (29)
T 2m0e_A 3 HKCPHCDKKFNQVGNL 18 (29)
T ss_dssp CCCSSCCCCCCTTTHH
T ss_pred CcCCCCCcccCCHHHH
Confidence 4688887776665443
No 205
>2i50_A Ubiquitin carboxyl-terminal hydrolase 16; alpha/beta zinc-finger, ring-finger, ZNF-UBP, metalloprotein, ubiquitin-binding protein, USP; NMR {Homo sapiens}
Probab=22.66 E-value=18 Score=28.36 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCCCCCCCC-------------CCCcccccccccccchh-----hHHHHHhc
Q 024073 217 TICPLCSQK-------------RANPSVVTVSGFVFCYA-----CIFKYVSQ 250 (273)
Q Consensus 217 ~~CpiC~~~-------------~~np~~l~~~G~vfCy~-----Ci~~~~~~ 250 (273)
..|+.|... ..|--++-.||||.|-+ -+.++.++
T Consensus 29 ~~C~~C~~~~~~~~~~~~~~~~~~~Lw~CL~CG~vgCgr~~~~~Ha~~H~~~ 80 (126)
T 2i50_A 29 NICQDCKTDNKVKDKAEEETEEKPSVWLCLKCGHQGCGRNSQEQHALKHYLT 80 (126)
T ss_dssp SSCHHHHTCTTSSCSSCTTTCCCCCEEEETTTCCEEECTTSSSCHHHHHHHS
T ss_pred CcCccccccccccccccccccccccceeeeeCCccccCCCCcchHHHHHHhC
Confidence 468888864 34444555599999944 45566654
No 206
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=22.32 E-value=32 Score=19.32 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHhhHHH
Q 024073 62 TSLTKKIQKIIFACYPWLH 80 (273)
Q Consensus 62 ~~~~~~~k~~f~~~YP~i~ 80 (273)
++++++++++|+++-|.|-
T Consensus 4 krfrkkfkklfkklspvip 22 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPVIP 22 (27)
T ss_dssp HHHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHHHHhcCcccc
Confidence 4778888999998877653
No 207
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=22.25 E-value=19 Score=21.01 Aligned_cols=16 Identities=19% Similarity=0.519 Sum_probs=11.1
Q ss_pred CCCCCCCCCCCCCccc
Q 024073 216 RTICPLCSQKRANPSV 231 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~ 231 (273)
...||+|...+-|+-.
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 4578888877766643
No 208
>4ge6_A Tyrosine-protein phosphatase non-receptor type 9; hydrolase-hydrolase inhibitor complex; HET: B26; 1.40A {Homo sapiens} PDB: 4ge2_A* 4ge5_A* 2pa5_A*
Probab=21.88 E-value=25 Score=31.42 Aligned_cols=20 Identities=20% Similarity=0.607 Sum_probs=17.2
Q ss_pred ccccccchhhHHHHHhcCCC
Q 024073 234 VSGFVFCYACIFKYVSQYKR 253 (273)
Q Consensus 234 ~~G~vfCy~Ci~~~~~~~~~ 253 (273)
.--|+|||.|+.+|++++|-
T Consensus 286 ~~QY~Fiy~~ll~y~~~~g~ 305 (314)
T 4ge6_A 286 PEQYYFCYKAILEFAEKEGM 305 (314)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCc
Confidence 36799999999999998763
No 209
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=21.85 E-value=20 Score=30.14 Aligned_cols=24 Identities=21% Similarity=0.642 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhH
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACI 244 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci 244 (273)
....|++|++..-+. |-..|.+|.
T Consensus 162 ~~~~C~~CGE~~~~~------g~~~C~~C~ 185 (191)
T 3d00_A 162 KIVLCPQCREAYPAQ------DGELCLSCQ 185 (191)
T ss_dssp CEEECTTTCCEEEGG------GCSSCHHHH
T ss_pred CCEECCcCCCChhhC------CCcCCcccc
Confidence 466899999976544 999999996
No 210
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.70 E-value=14 Score=24.11 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPA 261 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~ 261 (273)
...|++|++...+...+.. +..-.|++|++..
T Consensus 18 ~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f 49 (73)
T 2ctu_A 18 SQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDS 49 (73)
T ss_dssp EEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTC
T ss_pred CeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhh
Confidence 4689999998887776653 3445677776554
No 211
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.47 E-value=48 Score=25.35 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 216 RTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
...|.-|.++|.+..++..-|..|-..| -+|-.|+.++.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 4689999999998754444665554433 35677877764
No 212
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=21.44 E-value=27 Score=26.47 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCCcc---cccccccccchhh
Q 024073 216 RTICPLCSQKRANPS---VVTVSGFVFCYAC 243 (273)
Q Consensus 216 ~~~CpiC~~~~~np~---~l~~~G~vfCy~C 243 (273)
...|.-|...-.+.. ++-+||||.|.+=
T Consensus 18 ~~~C~~C~~~~~~Wv~LwlCL~CG~VGC~r~ 48 (102)
T 2ida_A 18 ALGCEECLKIGSPWVHLRICRTCGHVGCCDD 48 (102)
T ss_dssp SSSCHHHHTTTCCCSCBEEESSSCCCCBCTT
T ss_pred CCcCccccccCCcchheeeeeEcCCCcccCC
Confidence 457999988765443 4545999999654
No 213
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=21.42 E-value=1.2e+02 Score=22.41 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCCCc-ccccccccccchhhHHHH
Q 024073 215 DRTICPLCSQKRANP-SVVTVSGFVFCYACIFKY 247 (273)
Q Consensus 215 ~~~~CpiC~~~~~np-~~l~~~G~vfCy~Ci~~~ 247 (273)
....|.||..--.+. --+.+||-||--.|+.+-
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCcccCccccccccceeccccccccccHhhcccc
Confidence 567899998533222 234569999999999985
No 214
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.97 E-value=58 Score=22.29 Aligned_cols=48 Identities=8% Similarity=0.154 Sum_probs=29.1
Q ss_pred CCCCCCCCCCCCCCc---------------ccccccccccchhhH-HHHHhcC-----CCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANP---------------SVVTVSGFVFCYACI-FKYVSQY-----KRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np---------------~~l~~~G~vfCy~Ci-~~~~~~~-----~~CPv~~~~~~ 262 (273)
....|++|.+...+. -.++.||..|-..-. ..+++.+ -+|++|++...
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEES
T ss_pred cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 357899999877543 345557777655432 3344433 36888887653
No 215
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.89 E-value=47 Score=21.99 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=23.1
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHHhcC-----CCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQY-----KRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~-----~~CPv~~~~~~ 262 (273)
....|++|.+...+...+. .+++.+ -.|++|++...
T Consensus 17 ~~~~C~~C~~~f~~~~~l~------------~H~~~h~~~~~~~C~~C~~~f~ 57 (77)
T 2cot_A 17 RRYKCDECGKSFSHSSDLS------------KHRRTHTGEKPYKCDECGKAFI 57 (77)
T ss_dssp CSSBCSSSCCBCSCHHHHH------------HHHTTTCCSCSEECSSSCCEES
T ss_pred CCEECCCCCcccCCHHHHH------------HHHHHcCCCcCeeCCCCCCccC
Confidence 3578999999887765443 122222 36888887653
No 216
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=20.82 E-value=53 Score=21.89 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKR 226 (273)
Q Consensus 215 ~~~~CpiC~~~~ 226 (273)
....||-|+..+
T Consensus 17 ~~~fCPkCG~~~ 28 (55)
T 2k4x_A 17 KHRFCPRCGPGV 28 (55)
T ss_dssp SSCCCTTTTTTC
T ss_pred ccccCcCCCCce
Confidence 467899999854
No 217
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=20.78 E-value=47 Score=25.07 Aligned_cols=10 Identities=20% Similarity=0.856 Sum_probs=5.2
Q ss_pred CCCCCCCCCC
Q 024073 218 ICPLCSQKRA 227 (273)
Q Consensus 218 ~CpiC~~~~~ 227 (273)
.|..|.++|.
T Consensus 68 ~C~~C~~~I~ 77 (131)
T 2xjy_A 68 LCASCDKRIR 77 (131)
T ss_dssp ECTTTCCEEC
T ss_pred ChhhcCCccC
Confidence 4555555554
No 218
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=20.51 E-value=54 Score=33.13 Aligned_cols=35 Identities=23% Similarity=0.613 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCCccc----------ccccccccchhhHHHHHhcC
Q 024073 216 RTICPLCSQKRANPSV----------VTVSGFVFCYACIFKYVSQY 251 (273)
Q Consensus 216 ~~~CpiC~~~~~np~~----------l~~~G~vfCy~Ci~~~~~~~ 251 (273)
...||+|--.+.+-++ ++ ||-.||..|-..+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~e~~c~~c~~~~~~~~ 57 (776)
T 4gut_A 13 TATCPVCFASASERCAKNGYTSRWYHLS-CGEHFCNECFDHYYRSH 57 (776)
T ss_dssp CCSSCCBSCCCSTTCCTTSCBSCEEEEE-TTEEEEHHHHHHHHSTT
T ss_pred cccccHHHHHHHHHHHhCCCCcceeEec-cccchhHHHHHHHhccC
Confidence 5689999998887753 45 88899999999888654
No 219
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.44 E-value=82 Score=21.59 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCCcccccccccccchhhHHHHHhcCCCCCCCCCCCC
Q 024073 217 TICPLCSQKRANPSVVTVSGFVFCYACIFKYVSQYKRCPVTLMPAT 262 (273)
Q Consensus 217 ~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~~~~~~CPv~~~~~~ 262 (273)
..|..|.++|....+ ..-|.+|.-.| -+|-.|++++.
T Consensus 16 ~~C~~C~~~I~~~~v-~a~~~~wH~~C--------F~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIEGEVV-SALGKTYHPDC--------FVCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCCSCCE-EETTEEECTTT--------SSCSSSCCCCC
T ss_pred CcCccccCEeccceE-EECCceeCccC--------CccccCCCCCC
Confidence 367777777764433 32554444332 24556666654
No 220
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.26 E-value=59 Score=24.82 Aligned_cols=30 Identities=20% Similarity=0.470 Sum_probs=23.2
Q ss_pred CCCCCCCCCCCCC---cccccccccccchhhHHH
Q 024073 216 RTICPLCSQKRAN---PSVVTVSGFVFCYACIFK 246 (273)
Q Consensus 216 ~~~CpiC~~~~~n---p~~l~~~G~vfCy~Ci~~ 246 (273)
-+.|..|.+.+.+ .... .-|.+||-.|-.+
T Consensus 88 CF~C~~C~~~L~~~g~~f~~-~dg~~yC~~cy~~ 120 (123)
T 2l4z_A 88 CLKCSSCQAQLGDIGTSSYT-KSGMILCRNDYIR 120 (123)
T ss_dssp TSBCTTTCCBGGGTTCCCBC-SSSCCBCHHHHHH
T ss_pred ccCcCcCCCcccccCCceEE-ECCEEeCHHHhhh
Confidence 4789999999962 3444 5999999998654
No 221
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.15 E-value=23 Score=23.36 Aligned_cols=40 Identities=10% Similarity=0.076 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCCCCcccccccccccchhhHHHHH-hcCCCCCCCCCCCC
Q 024073 215 DRTICPLCSQKRANPSVVTVSGFVFCYACIFKYV-SQYKRCPVTLMPAT 262 (273)
Q Consensus 215 ~~~~CpiC~~~~~np~~l~~~G~vfCy~Ci~~~~-~~~~~CPv~~~~~~ 262 (273)
....|++|.+...+...+. -|+- ... ++.-+|++|++...
T Consensus 13 k~~~C~~C~k~f~~~~~L~--~H~~------~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSILV--QHQR------VHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEESSHHHHH--HHHH------GGGCSCCEECSSSCCEES
T ss_pred CCccCCCCCCccCCHHHHH--HHHH------hcCCCCCeECCCCCcccC
Confidence 3578999998887775543 1210 011 11237999987654
Done!