BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024077
(273 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 308 bits (790), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/278 (55%), Positives = 192/278 (69%), Gaps = 15/278 (5%)
Query: 7 EISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIA 66
+ISS+K FGG K F+H S L C M F +Y K P LYWLSGLTCT++NFI+
Sbjct: 5 QISSNKCFGGLQKVFEHDSVELNCKMKFAVYLPPKAETG-KCPALYWLSGLTCTEQNFIS 63
Query: 67 KSGAQRAASAEG-----------GLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDY 114
KSG ++AS G G N++GE +SWDFG GAGFY++AT++ WK N+RMY Y
Sbjct: 64 KSGYHQSASEHGLVVIAPDTSPRGCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSY 123
Query: 115 VVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCP 174
V +ELP+L++ NFP ++ R SIFGHSMGGHGAL LKN KYKSVSAFAPICNPV CP
Sbjct: 124 VTEELPQLINANFP-VDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLCP 182
Query: 175 WGQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQGQDDKFLPD-QLFPNKFEEA 233
WG+KAF+ YLG++++ W+ YDAT LV ILIDQG+DD+FL D QL P+ F A
Sbjct: 183 WGKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAA 242
Query: 234 CRSANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQAL 271
C + ++ R Q YDHSY+FIATFI DHI HHA+ L
Sbjct: 243 CTEKKIPVVFRLQEDYDHSYYFIATFITDHIRHHAKYL 280
>pdb|3S8Y|A Chain A, Bromide Soaked Structure Of An Esterase From The
Oil-Degrading Bacterium Oleispira Antarctica
Length = 280
Score = 284 bits (727), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 147/276 (53%), Positives = 186/276 (67%), Gaps = 16/276 (5%)
Query: 8 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAK 67
+SS+K FGG++K++ H S TL C+M F IY K PVLYWLSGLTC+DENF+ K
Sbjct: 7 LSSNKSFGGWHKQYSHVSNTLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSDENFMQK 66
Query: 68 SGAQRAASAEGGLNV---------EGEAD--SWDFGVGAGFYLNATQEKW-KNWRMYDYV 115
+GAQR A AE G+ + EG AD +D G GAGFY+NATQ W ++++MYDYV
Sbjct: 67 AGAQRLA-AELGIAIVAPDTSPRGEGVADDEGYDLGQGAGFYVNATQAPWNRHYQMYDYV 125
Query: 116 VKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPW 175
V ELP+L+ FP + + +I GHSMGGHGALTI L+N ++Y+SVSAF+PI NPVNCPW
Sbjct: 126 VNELPELIESMFPV--SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFSPINNPVNCPW 183
Query: 176 GQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQGQDDKFLPDQLFPNKFEEACR 235
GQKAFT YLG + W EYDA+ L+ K L+DQG+ D FL +QL P E A
Sbjct: 184 GQKAFTAYLGKDTDTWREYDASLLMRAAKQY-VPALVDQGEADNFLAEQLKPEVLEAAAS 242
Query: 236 SANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQAL 271
S N L LR GYDHSY+FIA+FI+DH+ H+ L
Sbjct: 243 SNNYPLELRSHEGYDHSYYFIASFIEDHLRFHSNYL 278
>pdb|3I6Y|A Chain A, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
pdb|3I6Y|B Chain B, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
Length = 280
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 144/276 (52%), Positives = 182/276 (65%), Gaps = 16/276 (5%)
Query: 8 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAK 67
+SS+K FGG++K++ H S TL C+ F IY K PVLYWLSGLTC+DENF K
Sbjct: 7 LSSNKSFGGWHKQYSHVSNTLNCAXRFAIYLPPQASTGAKVPVLYWLSGLTCSDENFXQK 66
Query: 68 SGAQRAASAEGGLNV---------EGEAD--SWDFGVGAGFYLNATQEKW-KNWRMYDYV 115
+GAQR A AE G+ + EG AD +D G GAGFY+NATQ W ++++ YDYV
Sbjct: 67 AGAQRLA-AELGIAIVAPDTSPRGEGVADDEGYDLGQGAGFYVNATQAPWNRHYQXYDYV 125
Query: 116 VKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPW 175
V ELP+L+ FP + + +I GHS GGHGALTI L+N ++Y+SVSAF+PI NPVNCPW
Sbjct: 126 VNELPELIESXFPV--SDKRAIAGHSXGGHGALTIALRNPERYQSVSAFSPINNPVNCPW 183
Query: 176 GQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQGQDDKFLPDQLFPNKFEEACR 235
GQKAFT YLG + W EYDA SL+ + L+DQG+ D FL +QL P E A
Sbjct: 184 GQKAFTAYLGKDTDTWREYDA-SLLXRAAKQYVPALVDQGEADNFLAEQLKPEVLEAAAS 242
Query: 236 SANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQAL 271
S N L LR GYDHSY+FIA+FI+DH+ H+ L
Sbjct: 243 SNNYPLELRSHEGYDHSYYFIASFIEDHLRFHSNYL 278
>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
Length = 283
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/276 (47%), Positives = 179/276 (64%), Gaps = 15/276 (5%)
Query: 8 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAK 67
I ++FGG + + H + TL C M F +Y V+YWLSGLTCT++NFI K
Sbjct: 12 IEQHQIFGGSQQVWAHHAQTLQCEMKFAVYLPNNPENR-PLGVIYWLSGLTCTEQNFITK 70
Query: 68 SGAQRAASAEGGLNV------EGEA----DSWDFGVGAGFYLNATQEKWK-NWRMYDYVV 116
SG QR A+ + V GE D++D G AGFYLNAT++ W N++MYDY++
Sbjct: 71 SGFQRYAAEHQVIVVAPDTSPRGEQVPNDDAYDLGQSAGFYLNATEQPWAANYQMYDYIL 130
Query: 117 KELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPWG 176
ELP+L+ ++FP + SI GHSMGGHGAL + L+N ++Y+SVSAF+PI +P PWG
Sbjct: 131 NELPRLIEKHFP--TNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSPILSPSLVPWG 188
Query: 177 QKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQGQDDKFLPDQLFPNKFEEACRS 236
+KAFT YLG ++ W++YDA SL+ + V + IDQG +D+FLP QL F E CR+
Sbjct: 189 EKAFTAYLGKDREKWQQYDANSLIQQGYKVQG-MRIDQGLEDEFLPTQLRTEDFIETCRA 247
Query: 237 ANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQALR 272
AN + +RF GYDHSY+FIA+FI +HI +HA L+
Sbjct: 248 ANQPVDVRFHKGYDHSYYFIASFIGEHIAYHAAFLK 283
>pdb|3LS2|A Chain A, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|B Chain B, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|C Chain C, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|D Chain D, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
Length = 280
Score = 256 bits (655), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 134/277 (48%), Positives = 175/277 (63%), Gaps = 16/277 (5%)
Query: 8 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAK 67
ISS K+ GG++K++ H + + C+M F ++ K PVLYWLSGLTCTDENF+ K
Sbjct: 5 ISSVKVSGGWHKQYTHSAVSTHCTMRFAVFLPPGASESNKVPVLYWLSGLTCTDENFMQK 64
Query: 68 SGAQRAASAEG-----------GLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYV 115
+GA + A+ G G NV E DS+DF GAGFY+NATQ + ++ MYDYV
Sbjct: 65 AGAFKKAAELGIAIVAPDTSPRGDNVPNE-DSYDFAQGAGFYVNATQAPYNTHFNMYDYV 123
Query: 116 VKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPW 175
V ELP L+ ++FP TS +I GHSMGGHGAL I LKN Y S SAF+PI NP+NCPW
Sbjct: 124 VNELPALIEQHFP--VTSTKAISGHSMGGHGALMIALKNPQDYVSASAFSPIVNPINCPW 181
Query: 176 GQKAFTNYLGSNKADWEEYDATSLVSKNKNVS-ATILIDQGQDDKFLPDQLFPNKFEEAC 234
G KAFT YLG++K W +YD+ L++K + + +L+ QG D FL +QL P
Sbjct: 182 GVKAFTGYLGADKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVA 241
Query: 235 RSANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQAL 271
+ + L L Q GYDHSYFFI++FID H+ H Q L
Sbjct: 242 KQKDYPLTLEMQTGYDHSYFFISSFIDQHLVFHHQYL 278
>pdb|3E4D|A Chain A, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|B Chain B, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|C Chain C, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|E Chain E, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|D Chain D, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|F Chain F, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
Length = 278
Score = 196 bits (498), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 158/276 (57%), Gaps = 15/276 (5%)
Query: 8 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAK 67
IS + FGG F H S TL F +Y PV+++LSGLTCT N K
Sbjct: 5 ISQNTAFGGXQGVFSHQSETLKSEXTFAVYVPPKAIHE-PCPVVWYLSGLTCTHANVXEK 63
Query: 68 SGAQRAASAEG-----------GLNVEGEADSWDFGVGAGFYLNATQEKW-KNWRMYDYV 115
+R AS G G +V E +W G GAGFYL+AT+E W ++++ Y YV
Sbjct: 64 GEYRRXASELGLVVVCPDTSPRGNDVPDELTNWQXGKGAGFYLDATEEPWSEHYQXYSYV 123
Query: 116 VKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPW 175
+ELP L+ ++F + + SR SIFGHS GGHGA TI LKN +++KS SAFAPI P + W
Sbjct: 124 TEELPALIGQHF-RADXSRQSIFGHSXGGHGAXTIALKNPERFKSCSAFAPIVAPSSADW 182
Query: 176 GQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQGQDDKFLPDQLFPNKFEEACR 235
+ A YLG+++A W YDA SLV LIDQG+ D FL L P FEEA +
Sbjct: 183 SEPALEKYLGADRAAWRRYDACSLVEDGARF-PEFLIDQGKADSFLEKGLRPWLFEEAIK 241
Query: 236 SANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQAL 271
++ L LR YDHSY+FI+TF DDH+ HA+ L
Sbjct: 242 GTDIGLTLRXHDRYDHSYYFISTFXDDHLKWHAERL 277
>pdb|1PV1|A Chain A, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|B Chain B, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|C Chain C, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|D Chain D, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
Length = 299
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/288 (40%), Positives = 158/288 (54%), Gaps = 29/288 (10%)
Query: 15 GGYNKRFKHFSTTLGCSMNFHIY-----FXXXXXXXYKFPVLYWLSGLTCTDENFIAKSG 69
GG + H S + SMN +IY + + P +++LSGLTCT +N K+
Sbjct: 11 GGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAF 70
Query: 70 AQRAASAEG-----------GLNVEGEAD-SWDFGVGAGFYLNATQEKW-KNWRMYDYVV 116
Q A G G V + + SWDFG GAGFYLNATQE + ++++MYDY+
Sbjct: 71 WQFQADKYGFAIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIH 130
Query: 117 KELPKLLSENFPQLETSR------ASIFGHSMGGHGALTIYLKNLD--KYKSVSAFAPIC 168
KELP+ L +F + + +I GHSMGG+GA+ YLK +YKS SAFAPI
Sbjct: 131 KELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYKSCSAFAPIV 190
Query: 169 NPVNCPWGQKAFTNYLGSNKADWEEYDATSLVSKNKNV-SATILIDQGQDDKFLPDQLFP 227
NP N PWGQKAF YLG KA WE YD L+ ++V ILI G D FL + L P
Sbjct: 191 NPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEHLKP 250
Query: 228 NKFEEACRSANVALLLRFQP--GYDHSYFFIATFIDDHIHHHAQALRL 273
EA ++ + + + G+DHSY+F++TF+ +H HA+ L L
Sbjct: 251 ELLLEAVKATSWQDYVEIKKVHGFDHSYYFVSTFVPEHAEFHARNLGL 298
>pdb|4FOL|A Chain A, S-Formylglutathione Hydrolase Variant H160i
pdb|4FOL|B Chain B, S-Formylglutathione Hydrolase Variant H160i
pdb|4FOL|C Chain C, S-Formylglutathione Hydrolase Variant H160i
pdb|4FOL|D Chain D, S-Formylglutathione Hydrolase Variant H160i
Length = 299
Score = 181 bits (459), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 157/288 (54%), Gaps = 29/288 (10%)
Query: 15 GGYNKRFKHFSTTLGCSMNFHIY-----FXXXXXXXYKFPVLYWLSGLTCTDENFIAKSG 69
GG + H S + SMN +IY + + P +++LSGLTCT +N K+
Sbjct: 11 GGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAF 70
Query: 70 AQRAASAEG-----------GLNVEGEAD-SWDFGVGAGFYLNATQEKW-KNWRMYDYVV 116
Q A G G V + + SWDFG GAGFYLNATQE + ++++MYDY+
Sbjct: 71 WQFQADKYGFAIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIH 130
Query: 117 KELPKLLSENFPQLETSR------ASIFGHSMGGHGALTIYLKNLD--KYKSVSAFAPIC 168
KELP+ L +F + + +I G SMGG+GA+ YLK +YKS SAFAPI
Sbjct: 131 KELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYLKGYSGKRYKSCSAFAPIV 190
Query: 169 NPVNCPWGQKAFTNYLGSNKADWEEYDATSLVSKNKNV-SATILIDQGQDDKFLPDQLFP 227
NP N PWGQKAF YLG KA WE YD L+ ++V ILI G D FL + L P
Sbjct: 191 NPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEHLKP 250
Query: 228 NKFEEACRSANVALLLRFQP--GYDHSYFFIATFIDDHIHHHAQALRL 273
EA ++ + + + G+DHSY+F++TF+ +H HA+ L L
Sbjct: 251 ELLLEAVKATSWQDYVEIKKVHGFDHSYYFVSTFVPEHAEFHARNLGL 298
>pdb|3C6B|A Chain A, Reaction Product Of Paraoxon And S-Formylglutathione
Hydrolase W197i Mutant
pdb|4FLM|A Chain A, S-Formylglutathione Hydrolase W197i Variant Containing
Copper
pdb|4FLM|B Chain B, S-Formylglutathione Hydrolase W197i Variant Containing
Copper
Length = 299
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 113/288 (39%), Positives = 155/288 (53%), Gaps = 29/288 (10%)
Query: 15 GGYNKRFKHFSTTLGCSMNFHIY-----FXXXXXXXYKFPVLYWLSGLTCTDENFIAKSG 69
GG + H S + SMN +IY + + P +++LSGLT T +N K+
Sbjct: 11 GGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTXTPDNASEKAF 70
Query: 70 AQRAASAEG-----------GLNVEGEAD-SWDFGVGAGFYLNATQEKW-KNWRMYDYVV 116
Q A G G V + + SWDFG GAGFYLNATQE + ++++MYDY+
Sbjct: 71 WQFQADKYGFAIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIH 130
Query: 117 KELPKLLSENFPQLETSR------ASIFGHSMGGHGALTIYLKNLD--KYKSVSAFAPIC 168
KELP+ L +F + + +I GH MGG+GA+ YLK +YKS SAFAPI
Sbjct: 131 KELPQTLDSHFNKNGDVKLDFLDNVAITGHXMGGYGAICGYLKGYSGKRYKSCSAFAPIV 190
Query: 169 NPVNCPWGQKAFTNYLGSNKADWEEYDATSLVSKNKNV-SATILIDQGQDDKFLPDQLFP 227
NP N P GQKAF YLG KA WE YD L+ ++V ILI G D FL + L P
Sbjct: 191 NPSNVPIGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEHLKP 250
Query: 228 NKFEEACRSANVALLLRFQP--GYDHSYFFIATFIDDHIHHHAQALRL 273
EA ++ + + + G+DHSY+F++TF+ +H HA+ L L
Sbjct: 251 ELLLEAVKATSWQDYVEIKKVHGFDHSYYFVSTFVPEHAEFHARNLGL 298
>pdb|2QM0|A Chain A, Crystal Structure Of Bes Protein From Bacillus Cereus
pdb|2QM0|B Chain B, Crystal Structure Of Bes Protein From Bacillus Cereus
Length = 275
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 68/181 (37%), Gaps = 21/181 (11%)
Query: 6 TEISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSG--------- 56
T + ++ +++K +S G HI +PV+Y L G
Sbjct: 6 TTVEKQQIITSNTEQWKXYSKLEGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHE 65
Query: 57 LTCTDENFIAKSGAQRAASAEGGLNVEG----EADSWDFGVGAGFYLNATQEKWKNW--- 109
K+G A G +EG E +DF + K W
Sbjct: 66 AVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKT 125
Query: 110 ----RMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFA 165
+ ++ +EL + +NF +++ + ++FGH +GG AL I NL+ +++ +
Sbjct: 126 GGAHNFFTFIEEELKPQIEKNF-EIDKGKQTLFGHXLGGLFALHILFTNLNAFQNYFISS 184
Query: 166 P 166
P
Sbjct: 185 P 185
>pdb|2UZ0|A Chain A, The Crystal Crystal Structure Of The Esta Protein, A
Virulence Factor Esta Protein From Streptococcus
Pneumonia
pdb|2UZ0|B Chain B, The Crystal Crystal Structure Of The Esta Protein, A
Virulence Factor Esta Protein From Streptococcus
Pneumonia
pdb|2UZ0|C Chain C, The Crystal Crystal Structure Of The Esta Protein, A
Virulence Factor Esta Protein From Streptococcus
Pneumonia
pdb|2UZ0|D Chain D, The Crystal Crystal Structure Of The Esta Protein, A
Virulence Factor Esta Protein From Streptococcus
Pneumonia
Length = 263
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 48 FPVLYWLSGLTCTDENFIAKSGAQRAASAEGGLNVE-GEADSWDFGVGAGFYLNATQEKW 106
PVLY L G + +++ ++ +R + V ++ W GF
Sbjct: 41 IPVLYLLHGXSGNHNSWLKRTNVERLLRGTNLIVVXPNTSNGWYTDTQYGF--------- 91
Query: 107 KNWRMYDYVVKELPKLLSENFPQLETSRASIF--GHSMGGHGALTIYLKNLDKYKSVSAF 164
Y + +ELP++L FP + R F G S GG+G + L +++ ++F
Sbjct: 92 ---DYYTALAEELPQVLKRFFPNXTSKREKTFIAGLSXGGYGCFKLALTT-NRFSHAASF 147
Query: 165 A 165
+
Sbjct: 148 S 148
>pdb|1JJF|A Chain A, Structural Basis For The Substrate Specificity Of The
Feruloyl Esterase Domain Of The Cellulosomal Xylanase Z
Of Clostridium Thermocellum
Length = 268
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 18/157 (11%)
Query: 21 FKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS----A 76
+FST + +Y K+ VLY L G+ ++ ++ G + A
Sbjct: 35 ISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIA 94
Query: 77 EGGLN----VEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLET 132
EG + V ++ G+ G Y N T+ D + +P + S +
Sbjct: 95 EGKIKPLIIVTPNTNAAGPGIADG-YENFTK---------DLLNSLIPYIESNYSVYTDR 144
Query: 133 SRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICN 169
+I G SMGG + I L NLDK+ + + N
Sbjct: 145 EHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPN 181
>pdb|1JT2|A Chain A, Structural Basis For The Substrate Specificity Of The
Ferul Domain Of The Cellulosomal Xylanase Z From C.
Thermocellum
Length = 268
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 60/157 (38%), Gaps = 18/157 (11%)
Query: 21 FKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS----A 76
+FST + +Y K+ VLY L G+ ++ ++ G + A
Sbjct: 35 ISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIA 94
Query: 77 EGGLN----VEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLET 132
EG + V ++ G+ G Y N T+ D + +P + S +
Sbjct: 95 EGKIKPLIIVTPNTNAAGPGIADG-YENFTK---------DLLNSLIPYIESNYSVYTDR 144
Query: 133 SRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICN 169
+I G +MGG + I L NLDK+ + + N
Sbjct: 145 EHRAIAGLAMGGGQSFNIGLTNLDKFAYIGPISAAPN 181
>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
Length = 306
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 129 QLETSRASIFGHSMGGHGALTIYLKNLD 156
+++ SR ++ GHSMGG G L + + D
Sbjct: 163 RIDASRLAVMGHSMGGGGTLRLASQRPD 190
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 112 YDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYK 159
Y V EL + + F Q + + ++ GHS+GG AL L LD Y+
Sbjct: 115 YGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATAL---LCALDLYQ 159
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 112 YDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYK 159
Y V EL + + F Q + + ++ GHS+GG AL L LD Y+
Sbjct: 115 YGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATAL---LCALDLYQ 159
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 112 YDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYK 159
Y V EL + + F Q + + ++ GHS+GG AL L LD Y+
Sbjct: 115 YGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATAL---LCALDLYQ 159
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 121 KLLSENFPQLETSRASIFGHSMGGHGALTIYLK 153
++L QL+ ++ + G+SMGGH ++ LK
Sbjct: 95 RILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLK 127
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 115 VVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPIC 168
V+K + KLL E ++ +R I G SMGG+G T ++ + + +A PIC
Sbjct: 247 VIKIIRKLLDEY--NIDENRIYITGLSMGGYGTWTAIMEFPELF---AAAIPIC 295
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 112 YDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYK 159
Y V EL + + F Q + + ++ GHS+GG T+ L LD Y+
Sbjct: 115 YGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGA---TVLLCALDLYQ 159
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 143 GGHGALTIYLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDA------ 196
G G +Y L+ Y V+ + NP C + +F SNKA + +
Sbjct: 386 GMPGGRNLYRIQLNDYTKVTCLSCELNPERCQYYSASF-----SNKAKYYQLRCFGPGLP 440
Query: 197 -TSLVSKNKNVSATILIDQGQDDKFLPDQLFPNK 229
+L S + + +L D DK L D P+K
Sbjct: 441 LYTLHSSSSDKELRVLEDNSALDKMLQDVQMPSK 474
>pdb|2Y8N|A Chain A, Crystal Structure Of Glycyl Radical Enzyme
pdb|2Y8N|C Chain C, Crystal Structure Of Glycyl Radical Enzyme
pdb|2YAJ|A Chain A, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
pdb|2YAJ|C Chain C, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
Length = 897
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 16/98 (16%)
Query: 11 SKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGA 70
SKM GY+ +FK+ ++ C + Y P+ Y G+ + IA+
Sbjct: 194 SKMTPGYD-QFKNIMESVICMFDSFAIPQGREVINYYMPLQYGFDGIIKLCDEKIAE--- 249
Query: 71 QRAASAEGGLNVEGEA-DSWDFGVGAGFYLNATQEKWK 107
V GEA D DFG+ G+Y A +E K
Sbjct: 250 -----------VMGEAGDDGDFGMSRGYYYAAMKEITK 276
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 112 YDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAP 166
Y+ VV + ++ E T + + GHS+GG AL L +D Y+ +P
Sbjct: 116 YEQVVNDYFPVVQEQLTAHPTYKVIVTGHSLGGAQAL---LAGMDLYQREPRLSP 167
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 94 GAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLK 153
G G ++ E W +DY+ L ++L + + ++FG+SMGG AL
Sbjct: 52 GHGEDQSSMDETWN----FDYITTLLDRILD----KYKDKSITLFGYSMGGRVAL----- 98
Query: 154 NLDKYKSVSAFAPICNPV 171
Y +++ PI N +
Sbjct: 99 ----YYAINGHIPISNLI 112
>pdb|2VLN|B Chain B, N75a Mutant Of E9 Dnase Domain In Complex With Im9
Length = 134
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 165 APICNPVNCPWGQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQG 215
API + + K F ++ KA WEE +SKN N SA + +G
Sbjct: 32 APIPDRIADKLRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPSAKSSVSKG 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,736,464
Number of Sequences: 62578
Number of extensions: 374264
Number of successful extensions: 992
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 27
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)