BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024078
         (273 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1RGX|A Chain A, Crystal Structure Of Resisitin
 pdb|1RGX|B Chain B, Crystal Structure Of Resisitin
 pdb|1RGX|C Chain C, Crystal Structure Of Resisitin
          Length = 114

 Score = 28.5 bits (62), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 167 APVDELQVQGVDNPVLLRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAV 226
            P+DE           + K I  +   +  N+ KN  +N +T  V S  ++AS  EGTAV
Sbjct: 26  CPIDEA----------IDKKIKQDFNSLFPNAIKNIGLNCWT--VSSRGKLASCPEGTAV 73

Query: 227 LR----SPSKSWKVKK 238
           L     S   SW +++
Sbjct: 74  LSCSCGSACGSWDIRE 89


>pdb|1RFX|A Chain A, Crystal Structure Of Resisitin
 pdb|1RFX|B Chain B, Crystal Structure Of Resisitin
 pdb|1RFX|C Chain C, Crystal Structure Of Resisitin
          Length = 94

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 16/76 (21%)

Query: 167 APVDELQVQGVDNPVLLRKVIVTEAAKVIQNSSKNWKVNAFTGEVESMSRMASLTEGTAV 226
            P+DE           + K I  +   +  N+ KN  +N +T  V S  ++AS  EGTAV
Sbjct: 6   CPIDEA----------IDKKIKQDFNSLFPNAIKNIGLNCWT--VSSRGKLASCPEGTAV 53

Query: 227 LR----SPSKSWKVKK 238
           L     S   SW +++
Sbjct: 54  LSCSCGSACGSWDIRE 69


>pdb|3TLX|A Chain A, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|B Chain B, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|C Chain C, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
 pdb|3TLX|D Chain D, Crystal Structure Of Pf10_0086, Adenylate Kinase From
           Plasmodium Falciparum
          Length = 243

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 80  GVFMLLYLPIRRYVLKKDISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNE 129
           GVF   Y  +   VL   IS R ++     I +K+  P  +PF    TNE
Sbjct: 138 GVF---YFNVPDEVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVTNE 184


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,530,293
Number of Sequences: 62578
Number of extensions: 224790
Number of successful extensions: 518
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 517
Number of HSP's gapped (non-prelim): 3
length of query: 273
length of database: 14,973,337
effective HSP length: 97
effective length of query: 176
effective length of database: 8,903,271
effective search space: 1566975696
effective search space used: 1566975696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)