Query 024078
Match_columns 273
No_of_seqs 40 out of 42
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 17:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hth_B Vacuolar protein sortin 32.3 38 0.0013 27.4 3.6 85 96-191 35-128 (140)
2 3ha4_A MIX1; TPR-like, helix-t 27.8 37 0.0013 28.6 2.8 20 177-196 91-110 (154)
3 2cay_A VPS36 PH domain, vacuol 21.0 62 0.0021 26.4 2.9 87 97-195 49-136 (145)
4 2kl8_A OR15; structural genomi 14.9 1.1E+02 0.0038 23.4 2.8 26 171-198 43-68 (85)
5 2d4z_A Chloride channel protei 12.8 1.1E+02 0.0038 26.2 2.6 32 147-188 214-245 (250)
6 1z96_A DNA-damage, UBA-domain 11.0 48 0.0016 20.5 -0.2 30 240-269 2-31 (40)
7 1wz4_A Major surface antigen; 10.9 68 0.0023 20.0 0.5 10 116-125 15-24 (26)
8 2dak_A Ubiquitin carboxyl-term 10.1 72 0.0025 22.3 0.4 29 240-268 7-35 (63)
9 2cpw_A CBL-interacting protein 9.3 88 0.003 22.2 0.6 26 244-269 21-46 (64)
10 2yzs_A Putative uncharacterize 9.2 2.1E+02 0.007 25.6 3.1 39 101-145 2-43 (315)
No 1
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=32.26 E-value=38 Score=27.40 Aligned_cols=85 Identities=7% Similarity=0.124 Sum_probs=48.3
Q ss_pred hccccceeEEecCceEEeec--CCccccccccccccceecCcchheeeeehhhhhhhhceeEEEEEeeecCC-CCC----
Q 024078 96 KDISSRKLYVTPSEIVYKVS--RPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGK-AAP---- 168 (273)
Q Consensus 96 kdi~srkL~vT~~~ivYKvs--Rp~~fp~~Gv~r~Ek~VPL~~ItDviieQG~LqslfGl~~lrvEtaGqs~-~~~---- 168 (273)
..+.+-+||||.+-++|-=+ ++.- -.+||..|+++-++|+-+-+= .=.++.++..+..+ +||
T Consensus 35 ~~~k~G~l~LTshRli~~d~~~~~~s----------~~lpl~~v~~~e~~~~~f~~s-~Ki~l~l~~~~~~~~~gp~~~s 103 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWRDQKNHECC----------MAILLSQIVFIEEQAAGIGKS-AKIVVHLHPAPPNKEPGPFQSS 103 (140)
T ss_dssp SCCCCEEEEEESSEEEEEETTCCSCC----------EEEEGGGEEEEEEECCTTSSC-CEEEEEECCCCCCSSSCCCSTT
T ss_pred CCCcCCEEEEecCEEEEecCCCCceE----------EEEEhHHeeeeeeeccccccC-ceEEEEecCCCccCCCCCcccc
Confidence 35688999999999998221 1222 278999999999999853211 11235555433222 122
Q ss_pred -CCceeEeec-cChhhHHHHHHHHH
Q 024078 169 -VDELQVQGV-DNPVLLRKVIVTEA 191 (273)
Q Consensus 169 -~d~vql~GV-~np~~FRk~Il~q~ 191 (273)
.+-++|..= -.+.+|-.+..+..
T Consensus 104 ~~~~~kLsFr~Gg~~eF~~~L~~al 128 (140)
T 2hth_B 104 KNSYIKLSFKEHGQIEFYRRLSEEM 128 (140)
T ss_dssp SCCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cCcEEEEEEcCCCChHHHHHHHHHH
Confidence 123444321 33466766664443
No 2
>3ha4_A MIX1; TPR-like, helix-turn-helix, unknown function; 2.40A {Leishmania major}
Probab=27.80 E-value=37 Score=28.56 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=18.3
Q ss_pred ccChhhHHHHHHHHHHHhhh
Q 024078 177 VDNPVLLRKVIVTEAAKVIQ 196 (273)
Q Consensus 177 V~np~~FRk~Il~q~s~l~~ 196 (273)
|+||+.+||-||+|.-++.-
T Consensus 91 vadpd~~rkevlmqllnvky 110 (154)
T 3ha4_A 91 VADPDEMRKEVLMQLLNVKY 110 (154)
T ss_dssp CSCHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhhhc
Confidence 78999999999999998874
No 3
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=21.04 E-value=62 Score=26.44 Aligned_cols=87 Identities=14% Similarity=0.204 Sum_probs=50.3
Q ss_pred ccccceeEEecCceEEeecCCccccccccccccceecCcchheeeeehhhhhhhhceeEEEEEeeecCCCCCCCceeEee
Q 024078 97 DISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARGKAAPVDELQVQG 176 (273)
Q Consensus 97 di~srkL~vT~~~ivYKvsRp~~fp~~Gv~r~Ek~VPL~~ItDviieQG~LqslfGl~~lrvEtaGqs~~~~~d~vql~G 176 (273)
...+-.+|||++-++|==+.+ |. ..==.+||..|.|+-++|+-+-+- .++++ -.+.+..+.+.+++..
T Consensus 49 ~~k~G~lyLTshRIIyv~~~~---~~----~~SfslPL~~v~~~e~~~~~fg~s---~Ki~l--~~~p~~~~~~~~KLsF 116 (145)
T 2cay_A 49 QRQRGRIFLTSQRIIYIDDAK---PT----QNSLGLELDDLAYVNYSSGFLTRS---PRLIL--FFKDPSSSTEFVQLSF 116 (145)
T ss_dssp TCSSEEEEEESSEEEEEESSC---HH----HHCEEEEGGGEEEEEEECSSSSSS---CEEEE--EESSCSSTTCCEEEEE
T ss_pred CCCccEEEEEcCeEEEecCCC---Cc----ceEEEeEhHheeeeeEEcCccccC---ceEEE--EecCCCCCceEEEEEE
Confidence 468889999999999833222 10 011279999999999999985441 12221 1111111224566543
Q ss_pred c-cChhhHHHHHHHHHHHhh
Q 024078 177 V-DNPVLLRKVIVTEAAKVI 195 (273)
Q Consensus 177 V-~np~~FRk~Il~q~s~l~ 195 (273)
= --+.+|..+..+...+..
T Consensus 117 k~GGa~eF~~~l~~al~~~~ 136 (145)
T 2cay_A 117 RKSDGVLFSQATERALENIL 136 (145)
T ss_dssp SSSCCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHH
Confidence 2 234778777766655544
No 4
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=14.87 E-value=1.1e+02 Score=23.44 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=23.2
Q ss_pred ceeEeeccChhhHHHHHHHHHHHhhhcc
Q 024078 171 ELQVQGVDNPVLLRKVIVTEAAKVIQNS 198 (273)
Q Consensus 171 ~vql~GV~np~~FRk~Il~q~s~l~~~~ 198 (273)
++.|+|| |...||..-.+++++..+.
T Consensus 43 eiritgv--peqvrkelakeaerlakef 68 (85)
T 2kl8_A 43 EIRITGV--PEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp EEEEESC--CHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecC--hHHHHHHHHHHHHHHHHhc
Confidence 6788898 8999999999999999776
No 5
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=12.84 E-value=1.1e+02 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=27.9
Q ss_pred hhhhhceeEEEEEeeecCCCCCCCceeEeeccChhhHHHHHH
Q 024078 147 LQSIYGIHTFRVESIARGKAAPVDELQVQGVDNPVLLRKVIV 188 (273)
Q Consensus 147 LqslfGl~~lrvEtaGqs~~~~~d~vql~GV~np~~FRk~Il 188 (273)
|++..|+..+=|...| +|+||+.=.+++++|-
T Consensus 214 LF~~lglr~l~V~~~G----------rLVGIVTrkDl~kai~ 245 (250)
T 2d4z_A 214 LFSLLGLDRAYVTSMG----------KLVGVVALAEIQAAIE 245 (250)
T ss_dssp HHHHHTCSEEEEEETT----------EEEEEEEHHHHHHHHH
T ss_pred HHHHhCCeEEEEEECC----------EEEEEEEHHHHHHHHH
Confidence 6899999999998753 4899999999999985
No 6
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=11.02 E-value=48 Score=20.47 Aligned_cols=30 Identities=17% Similarity=0.034 Sum_probs=22.1
Q ss_pred CCchHHHHHHHHhhhhheeeecccccccCc
Q 024078 240 VRFSFLFQELVQGINQLKYLSVPLSQCNGQ 269 (273)
Q Consensus 240 p~~~~llqkL~e~~~slkri~~~l~~~~~~ 269 (273)
|.+.+.+++|.+|.-+-.+...-|..|||.
T Consensus 2 ~~~~~~i~~L~~mGf~~~~a~~AL~~~~~n 31 (40)
T 1z96_A 2 PGLNSKIAQLVSMGFDPLEAAQALDAANGD 31 (40)
T ss_dssp -CHHHHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 334457889999987777777778888873
No 7
>1wz4_A Major surface antigen; helix turn helix, gene regulation; NMR {Synthetic}
Probab=10.93 E-value=68 Score=20.00 Aligned_cols=10 Identities=30% Similarity=0.477 Sum_probs=8.0
Q ss_pred CCcccccccc
Q 024078 116 RPSFIPFWGK 125 (273)
Q Consensus 116 Rp~~fp~~Gv 125 (273)
|+.+||++|-
T Consensus 15 rgly~pAGGS 24 (26)
T 1wz4_A 15 RGLYFPAGGX 24 (26)
T ss_dssp GGGSCCSCC-
T ss_pred cccccCCccc
Confidence 8889999884
No 8
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=10.10 E-value=72 Score=22.28 Aligned_cols=29 Identities=10% Similarity=-0.216 Sum_probs=23.9
Q ss_pred CCchHHHHHHHHhhhhheeeecccccccC
Q 024078 240 VRFSFLFQELVQGINQLKYLSVPLSQCNG 268 (273)
Q Consensus 240 p~~~~llqkL~e~~~slkri~~~l~~~~~ 268 (273)
+...+.+++|.+|.=+-.+...-|.+|+|
T Consensus 7 ~~~~~~v~~L~~MGF~~~~a~~AL~~t~~ 35 (63)
T 2dak_A 7 GPPEDCVTTIVSMGFSRDQALKALRATNN 35 (63)
T ss_dssp CCCHHHHHHHHHHTCCHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 44455899999999888888888888887
No 9
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=9.32 E-value=88 Score=22.18 Aligned_cols=26 Identities=12% Similarity=-0.021 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhhheeeecccccccCc
Q 024078 244 FLFQELVQGINQLKYLSVPLSQCNGQ 269 (273)
Q Consensus 244 ~llqkL~e~~~slkri~~~l~~~~~~ 269 (273)
+.+++|.+|.=+-.+...-|..|+|.
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~~ 46 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGGR 46 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence 47899999999989999999999873
No 10
>2yzs_A Putative uncharacterized protein; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; 2.00A {Aquifex aeolicus}
Probab=9.21 E-value=2.1e+02 Score=25.55 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=25.3
Q ss_pred ceeEEecCceEEeecCCccccccccccc---cceecCcchheeeeehh
Q 024078 101 RKLYVTPSEIVYKVSRPSFIPFWGKTTN---ERHVPLSLVIDVIIEQG 145 (273)
Q Consensus 101 rkL~vT~~~ivYKvsRp~~fp~~Gv~r~---Ek~VPL~~ItDviieQG 145 (273)
|.+|+|.... ++.....+. +++ .+++|++.|..|++.-|
T Consensus 2 ~tlyi~~~g~-l~~~~~~l~-----v~~~~~~~~iPi~~i~~I~l~~~ 43 (315)
T 2yzs_A 2 RVYYINSHGT-LSRHENTLR-----FENAEVKKDIPVEDVEEIFVFAE 43 (315)
T ss_dssp CEEEECSCEE-EEEETTEEE-----EECSSCEEEECGGGCSEEEECSC
T ss_pred cEEEEeeCcE-EEEECCEEE-----EEECCcEEEEChHHccEEEEeCC
Confidence 4577776653 555555543 222 25799999999999744
Done!