Query 024078
Match_columns 273
No_of_seqs 40 out of 42
Neff 2.7
Searched_HMMs 13730
Date Mon Mar 25 17:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024078.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024078hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r31a1 d.58.20.1 (A:111-220) 34.7 12 0.00084 28.2 2.8 28 171-198 5-32 (110)
2 d1jb0i_ f.23.17.1 (I:) Subunit 28.1 29 0.0021 22.0 3.4 13 66-78 12-24 (38)
3 d2hthb1 b.55.1.12 (B:3-131) Va 23.1 22 0.0016 26.4 2.5 44 97-148 32-75 (129)
4 d2p0ma2 b.12.1.1 (A:2-112) 15- 21.6 35 0.0026 24.0 3.3 24 152-175 1-24 (111)
5 d2e74f1 f.23.25.1 (F:1-32) Pet 17.4 58 0.0043 19.7 3.1 15 71-85 14-28 (32)
6 d2caya1 b.55.1.12 (A:1-99,A:25 14.2 51 0.0037 24.6 2.8 45 98-149 42-86 (130)
7 d2gcla1 b.55.1.10 (A:237-474) 13.1 51 0.0037 26.6 2.6 32 100-143 156-187 (238)
8 d1eq3a_ d.26.1.1 (A:) Parvulin 12.2 36 0.0026 23.7 1.2 30 131-160 65-94 (96)
9 d1v54b2 f.17.2.1 (B:1-90) Mito 11.4 1.2E+02 0.0088 20.8 3.9 25 63-87 62-86 (90)
10 d1kwga3 c.23.16.5 (A:394-590) 10.3 1.4E+02 0.011 22.8 4.5 40 119-164 88-127 (197)
No 1
>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]}
Probab=34.69 E-value=12 Score=28.15 Aligned_cols=28 Identities=18% Similarity=0.472 Sum_probs=26.0
Q ss_pred ceeEeeccChhhHHHHHHHHHHHhhhcc
Q 024078 171 ELQVQGVDNPVLLRKVIVTEAAKVIQNS 198 (273)
Q Consensus 171 ~vql~GV~np~~FRk~Il~q~s~l~~~~ 198 (273)
.||+.+|.||...|+.|++.++++.+..
T Consensus 5 QIql~~v~d~~~a~~~i~~~k~~l~~~a 32 (110)
T d1r31a1 5 QVQIVGIQDPLNARLSLLRRKDEIIELA 32 (110)
T ss_dssp EEEEESCSCHHHHHHHHHHTHHHHHHHH
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999765
No 2
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=28.12 E-value=29 Score=22.00 Aligned_cols=13 Identities=23% Similarity=0.347 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 024078 66 WFSISLLLVLAWG 78 (273)
Q Consensus 66 W~lislllvLaWg 78 (273)
|++++++-.|.=.
T Consensus 12 wI~iPvv~wl~p~ 24 (38)
T d1jb0i_ 12 WIFIPVVCWLMPT 24 (38)
T ss_dssp HHHHHHHHTHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 8888876555444
No 3
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.10 E-value=22 Score=26.36 Aligned_cols=44 Identities=7% Similarity=0.129 Sum_probs=32.2
Q ss_pred ccccceeEEecCceEEeecCCccccccccccccceecCcchheeeeehhhhh
Q 024078 97 DISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQ 148 (273)
Q Consensus 97 di~srkL~vT~~~ivYKvsRp~~fp~~Gv~r~Ek~VPL~~ItDviieQG~Lq 148 (273)
.+.+-++|||.+-+||-=+.+.. .=-.+||..|.++-++|+.+.
T Consensus 32 ~~~~G~l~LTthRli~~~~~~~~--------~s~~lpl~~i~~~e~~~~~fg 75 (129)
T d2hthb1 32 KFDAGTLLLSTHRLIWRDQKNHE--------CCMAILLSQIVFIEEQAAGIG 75 (129)
T ss_dssp CCCCEEEEEESSEEEEEETTCCS--------CCEEEEGGGEEEEEEECCTTS
T ss_pred cccceEEEEEeceEEEecCCCCc--------eEEEEEhHHceeeeEEccccc
Confidence 46788999999999984333221 112689999999999998643
No 4
>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=21.61 E-value=35 Score=24.00 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.4
Q ss_pred ceeEEEEEeeecCCCCCCCceeEe
Q 024078 152 GIHTFRVESIARGKAAPVDELQVQ 175 (273)
Q Consensus 152 Gl~~lrvEtaGqs~~~~~d~vql~ 175 (273)
|.|+++|-|..+.++|-.+.|.|+
T Consensus 1 g~Y~I~v~TG~~~~AGT~a~V~i~ 24 (111)
T d2p0ma2 1 GVYRVCVSTGASIYAGSKNKVELW 24 (111)
T ss_dssp CEEEEEEEECSSSSCCCSSEEEEE
T ss_pred CeEEEEEEECCCCCCCCCCeEEEE
Confidence 789999999999998877777664
No 5
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=17.39 E-value=58 Score=19.73 Aligned_cols=15 Identities=40% Similarity=0.979 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q 024078 71 LLLVLAWGVGVFMLL 85 (273)
Q Consensus 71 lllvLaWgVGilmLL 85 (273)
-|.+.-|++|.++|-
T Consensus 14 glifvgwglgalllk 28 (32)
T d2e74f1 14 GLIFVGWGLGVLLLK 28 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHhh
Confidence 345678999998874
No 6
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.23 E-value=51 Score=24.62 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=32.5
Q ss_pred cccceeEEecCceEEeecCCccccccccccccceecCcchheeeeehhhhhh
Q 024078 98 ISSRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIEQGCLQS 149 (273)
Q Consensus 98 i~srkL~vT~~~ivYKvsRp~~fp~~Gv~r~Ek~VPL~~ItDviieQG~Lqs 149 (273)
+.+-++|||.+-+||-=+. - | .+.=-.+||..|.|+=++||-+-|
T Consensus 42 ~~~G~l~LTshRiI~v~~~-~--~----~~~S~slpL~~i~~~e~~~~~~~s 86 (130)
T d2caya1 42 RQRGRIFLTSQRIIYIDDA-K--P----TQNSLGLELDDLAYVNYSSGFLTR 86 (130)
T ss_dssp CSSEEEEEESSEEEEEESS-C--H----HHHCEEEEGGGEEEEEEECSSSSS
T ss_pred ccCceEEEEeeEEEEecCC-C--C----ceeEEEeEhhheeEeEEEccccCC
Confidence 5789999999999974321 1 0 012246999999999999986654
No 7
>d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.11 E-value=51 Score=26.56 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=26.4
Q ss_pred cceeEEecCceEEeecCCccccccccccccceecCcchheeeee
Q 024078 100 SRKLYVTPSEIVYKVSRPSFIPFWGKTTNERHVPLSLVIDVIIE 143 (273)
Q Consensus 100 srkL~vT~~~ivYKvsRp~~fp~~Gv~r~Ek~VPL~~ItDviie 143 (273)
+--||.++..++| +.+|.++ ++++.|..|-++
T Consensus 156 ~G~L~pl~~~llf-~~KP~~~-----------i~~~eI~~V~f~ 187 (238)
T d2gcla1 156 EGYLYPLDNAFFF-LTKPTLY-----------IPFSDVSMVNIS 187 (238)
T ss_dssp EEEEEECSSEEEE-ESSSCEE-----------EEGGGEEEEEEE
T ss_pred cEEEEEccCeEEE-ecCCcEE-----------EEehhEeEEEEE
Confidence 3457888899999 8888876 789999988887
No 8
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}
Probab=12.19 E-value=36 Score=23.69 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=24.7
Q ss_pred eecCcchheeeeehhhhhhhhceeEEEEEe
Q 024078 131 HVPLSLVIDVIIEQGCLQSIYGIHTFRVES 160 (273)
Q Consensus 131 ~VPL~~ItDviieQG~LqslfGl~~lrvEt 160 (273)
..|.-.|..++...||+++=||.|-|+||.
T Consensus 65 ~l~~g~is~~~~~~~pi~T~~G~HIikv~~ 94 (96)
T d1eq3a_ 65 ALPVSGMDKPVFTDPPVKTKFGYHIIMVEG 94 (96)
T ss_dssp HCCSCCSSTTTBCSSCEEETTEEEEEEEEE
T ss_pred hCCCCcCccccccCCCEecCCeEEEEEEee
Confidence 456666777777789999999999999984
No 9
>d1v54b2 f.17.2.1 (B:1-90) Mitochondrial cytochrome c oxidase, subunit II {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.40 E-value=1.2e+02 Score=20.81 Aligned_cols=25 Identities=16% Similarity=0.535 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Q 024078 63 TIIWFSISLLLVLAWGVGVFMLLYL 87 (273)
Q Consensus 63 t~~W~lislllvLaWgVGilmLLyl 87 (273)
-++|..++.+.+++=++==+-|||+
T Consensus 62 EiiWTiiP~lILi~ia~PSl~lLY~ 86 (90)
T d1v54b2 62 ETIWTILPAIILILIALPSLRILYM 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888877666544444666654
No 10
>d1kwga3 c.23.16.5 (A:394-590) A4 beta-galactosidase middle domain {Thermus thermophilus [TaxId: 274]}
Probab=10.32 E-value=1.4e+02 Score=22.78 Aligned_cols=40 Identities=35% Similarity=0.511 Sum_probs=32.4
Q ss_pred cccccccccccceecCcchheeeeehhhhhhhhceeEEEEEeeecC
Q 024078 119 FIPFWGKTTNERHVPLSLVIDVIIEQGCLQSIYGIHTFRVESIARG 164 (273)
Q Consensus 119 ~fp~~Gv~r~Ek~VPL~~ItDviieQG~LqslfGl~~lrvEtaGqs 164 (273)
+-|+-|+.....++|+..- =|+|+.++|+.--+||+....
T Consensus 88 ~g~rsG~~de~~~i~~~~~------Pg~L~~l~Gv~v~e~~~L~~~ 127 (197)
T d1kwga3 88 FGPRSGSKTETFQIPKELP------PGPLQALLPLKVVRVESLPPG 127 (197)
T ss_dssp ECTTTTCCCTTSCCCTTCT------TGGGGGTSCCEEEEEEECCTT
T ss_pred EeccCccccCCcEEccCCC------CCccccccceEEEEEEcCCCC
Confidence 3388899888889887643 478999999999999997533
Done!