Query 024079
Match_columns 273
No_of_seqs 166 out of 1219
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 08:47:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024079.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024079hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03718 R_switched_Alx integ 100.0 1.6E-49 3.5E-54 369.7 18.7 163 110-273 28-190 (302)
2 COG0861 TerC Membrane protein 99.9 1.4E-24 3E-29 198.5 12.7 120 131-262 2-123 (254)
3 PF03741 TerC: Integral membra 99.9 7.6E-25 1.6E-29 190.8 10.2 104 148-255 1-104 (183)
4 TIGR03716 R_switched_YkoY inte 99.9 1.8E-22 3.9E-27 180.9 10.1 81 152-235 2-82 (215)
5 TIGR03717 R_switched_YjbE inte 99.8 2.6E-19 5.7E-24 155.5 11.6 86 147-235 2-87 (176)
6 COG2899 Uncharacterized protei 99.8 5.5E-18 1.2E-22 158.5 12.2 139 112-257 1-167 (346)
7 PRK14013 hypothetical protein; 99.8 1.4E-17 2.9E-22 158.1 15.1 133 115-257 3-160 (338)
8 PF04332 DUF475: Protein of un 99.1 1.2E-10 2.5E-15 109.4 6.6 91 159-257 1-116 (294)
9 PF03741 TerC: Integral membra 97.1 0.0051 1.1E-07 54.2 10.3 69 151-228 113-182 (183)
10 PRK10995 inner membrane protei 97.1 0.0048 1E-07 55.4 10.1 70 159-230 22-95 (221)
11 TIGR03717 R_switched_YjbE inte 97.0 0.0088 1.9E-07 52.5 10.3 72 151-229 104-175 (176)
12 TIGR03716 R_switched_YkoY inte 96.9 0.012 2.5E-07 53.7 11.3 72 150-230 102-174 (215)
13 COG0861 TerC Membrane protein 96.8 0.028 6E-07 52.4 12.9 70 152-230 142-212 (254)
14 TIGR00427 membrane protein, Ma 96.6 0.019 4.1E-07 51.3 10.1 71 158-230 20-94 (201)
15 PF01914 MarC: MarC family int 96.6 0.015 3.3E-07 51.8 9.4 70 159-230 18-91 (203)
16 PRK10739 putative antibiotic t 96.4 0.031 6.7E-07 50.1 10.0 71 158-230 17-91 (197)
17 PRK10323 cysteine/O-acetylseri 96.4 0.072 1.6E-06 46.4 12.0 69 157-230 20-94 (195)
18 PRK11111 hypothetical protein; 96.3 0.035 7.5E-07 50.3 10.0 69 159-229 24-96 (214)
19 COG2095 MarC Multiple antibiot 96.0 0.042 9.1E-07 49.6 8.9 72 157-230 19-94 (203)
20 PRK09304 arginine exporter pro 95.7 0.13 2.8E-06 45.1 10.3 78 147-230 9-91 (207)
21 PRK10229 threonine efflux syst 95.6 0.15 3.3E-06 44.1 10.4 77 150-230 12-93 (206)
22 TIGR03718 R_switched_Alx integ 95.5 0.041 8.9E-07 52.6 7.1 70 152-230 200-270 (302)
23 COG1280 RhtB Putative threonin 95.4 0.2 4.3E-06 44.4 10.5 77 150-230 13-94 (208)
24 TIGR00948 2a75 L-lysine export 95.2 0.16 3.5E-06 43.1 8.9 67 158-230 6-77 (177)
25 PF03596 Cad: Cadmium resistan 94.4 0.22 4.7E-06 44.8 8.2 72 157-231 4-78 (191)
26 PRK10520 rhtB homoserine/homos 94.4 0.76 1.7E-05 39.9 11.3 73 152-230 15-94 (205)
27 PF01810 LysE: LysE type trans 94.3 0.35 7.6E-06 41.0 8.9 68 157-230 7-81 (191)
28 COG1971 Predicted membrane pro 93.8 0.54 1.2E-05 42.6 9.4 81 146-229 2-87 (190)
29 TIGR00949 2A76 The Resistance 93.6 0.65 1.4E-05 39.3 9.3 65 159-229 4-75 (185)
30 PRK10958 leucine export protei 93.6 0.63 1.4E-05 41.1 9.5 70 155-230 22-98 (212)
31 PRK11469 hypothetical protein; 92.4 1.4 3.1E-05 39.1 9.9 81 146-229 2-87 (188)
32 COG1279 Lysine efflux permease 91.8 1.9 4E-05 39.6 10.0 71 150-229 12-90 (202)
33 PRK11469 hypothetical protein; 90.5 3.7 8E-05 36.5 10.5 98 123-229 70-184 (188)
34 TIGR02840 spore_YtaF putative 90.3 2.7 6E-05 37.6 9.6 76 150-229 3-81 (206)
35 COG2119 Predicted membrane pro 88.8 1.8 3.9E-05 39.4 7.3 67 159-230 17-86 (190)
36 COG4300 CadD Predicted permeas 88.2 3.1 6.7E-05 38.2 8.4 92 146-240 4-98 (205)
37 PF07690 MFS_1: Major Facilita 88.1 13 0.00028 32.3 11.9 71 152-224 94-166 (352)
38 TIGR00900 2A0121 H+ Antiporter 88.0 17 0.00037 31.6 15.3 56 153-210 102-157 (365)
39 COG1971 Predicted membrane pro 87.6 10 0.00022 34.6 11.3 100 122-229 69-186 (190)
40 TIGR00779 cad cadmium resistan 87.4 1 2.2E-05 40.9 4.8 74 158-235 5-81 (193)
41 PRK12392 bacteriochlorophyll c 83.3 27 0.00058 33.7 12.6 32 109-140 89-120 (331)
42 TIGR00901 2A0125 AmpG-related 81.1 41 0.00088 30.2 12.3 58 150-209 90-147 (356)
43 TIGR00920 2A060605 3-hydroxy-3 79.1 33 0.00072 37.7 12.7 101 122-225 97-222 (886)
44 PF06011 TRP: Transient recept 72.2 1E+02 0.0022 30.2 14.5 78 184-263 202-302 (438)
45 PRK12884 ubiA prenyltransferas 71.7 60 0.0013 29.5 10.8 27 109-135 76-102 (279)
46 PF02460 Patched: Patched fami 69.4 36 0.00077 35.8 9.9 78 152-229 286-385 (798)
47 PRK06080 1,4-dihydroxy-2-napht 69.4 75 0.0016 29.1 11.0 30 109-138 81-110 (293)
48 TIGR01937 nqrB NADH:ubiquinone 69.4 30 0.00066 34.9 9.0 63 143-206 125-195 (413)
49 PRK09573 (S)-2,3-di-O-geranylg 68.7 74 0.0016 29.2 10.8 26 109-134 76-101 (279)
50 PRK14013 hypothetical protein; 66.8 27 0.00058 34.5 7.8 76 146-229 224-301 (338)
51 PRK10213 nepI ribonucleoside t 66.5 1.1E+02 0.0025 28.5 14.8 58 157-216 122-181 (394)
52 PRK05349 Na(+)-translocating N 64.1 40 0.00088 34.0 8.7 62 144-206 125-194 (405)
53 PF02659 DUF204: Domain of unk 63.8 54 0.0012 23.8 7.3 62 157-223 1-67 (67)
54 PRK10019 nickel/cobalt efflux 62.9 1.1E+02 0.0023 29.3 10.9 49 119-167 9-57 (279)
55 PF01040 UbiA: UbiA prenyltran 59.6 54 0.0012 28.4 7.8 24 109-132 64-87 (257)
56 PRK12887 ubiA tocopherol phyty 59.6 1.2E+02 0.0027 28.7 10.7 77 109-204 92-168 (308)
57 TIGR01476 chlor_syn_BchG bacte 58.9 1.4E+02 0.0031 27.3 10.8 27 109-135 77-103 (283)
58 PF11298 DUF3099: Protein of u 58.8 48 0.001 25.9 6.5 52 176-229 11-64 (73)
59 PRK10473 multidrug efflux syst 58.0 1.5E+02 0.0032 27.0 14.0 54 161-216 109-164 (392)
60 PF04632 FUSC: Fusaric acid re 57.7 1.6E+02 0.0034 29.7 11.6 96 119-226 340-435 (650)
61 PRK08633 2-acyl-glycerophospho 57.2 2.6E+02 0.0057 29.6 14.2 50 156-207 116-165 (1146)
62 TIGR00844 c_cpa1 na(+)/h(+) an 56.1 2E+02 0.0044 31.6 12.7 49 156-204 261-312 (810)
63 PRK04375 protoheme IX farnesyl 55.8 1.3E+02 0.0028 28.1 10.1 24 109-132 85-108 (296)
64 PRK05951 ubiA prenyltransferas 55.6 1.8E+02 0.0039 27.2 11.6 32 109-140 84-115 (296)
65 PRK10621 hypothetical protein; 53.6 1.8E+02 0.0038 26.5 11.3 37 193-229 86-124 (266)
66 COG0306 PitA Phosphate/sulphat 52.9 2.2E+02 0.0048 27.8 11.4 84 109-193 34-121 (326)
67 KOG2881 Predicted membrane pro 52.7 69 0.0015 31.1 7.8 66 159-229 82-150 (294)
68 TIGR00918 2A060602 The Eukaryo 52.6 2.1E+02 0.0047 32.5 12.6 73 152-226 465-561 (1145)
69 PRK12883 ubiA prenyltransferas 52.3 1.4E+02 0.003 27.4 9.5 24 109-132 76-99 (277)
70 TIGR02840 spore_YtaF putative 51.1 1.8E+02 0.004 26.0 11.1 70 147-226 128-205 (206)
71 PF06541 DUF1113: Protein of u 49.5 1.1E+02 0.0023 26.4 7.8 53 144-203 71-128 (157)
72 PRK10649 hypothetical protein; 49.4 2E+02 0.0044 29.7 11.1 51 136-190 25-79 (577)
73 PRK03545 putative arabinose tr 47.4 2.3E+02 0.0049 26.0 14.7 51 166-218 120-172 (390)
74 PRK10489 enterobactin exporter 46.1 2.5E+02 0.0053 26.0 13.4 34 174-209 341-376 (417)
75 PRK11102 bicyclomycin/multidru 45.7 2.2E+02 0.0049 25.4 14.2 61 157-219 93-155 (377)
76 PF00689 Cation_ATPase_C: Cati 45.7 1.8E+02 0.0038 24.2 9.2 23 178-200 123-145 (182)
77 COG1585 Membrane protein impli 45.1 1.5E+02 0.0032 25.4 8.0 58 211-269 53-110 (140)
78 PF06963 FPN1: Ferroportin1 (F 44.5 2.3E+02 0.005 28.4 10.4 18 114-131 252-269 (432)
79 TIGR00751 menA 1,4-dihydroxy-2 44.3 2.8E+02 0.006 26.1 12.2 31 110-140 72-102 (284)
80 PRK12895 ubiA prenyltransferas 44.2 2.9E+02 0.0062 26.2 12.3 22 109-130 78-99 (286)
81 TIGR00894 2A0114euk Na(+)-depe 44.0 2.8E+02 0.0062 26.1 13.5 62 155-218 143-207 (465)
82 PRK01024 Na(+)-translocating N 43.5 1.5E+02 0.0032 30.9 9.0 62 144-206 126-195 (503)
83 TIGR00917 2A060601 Niemann-Pic 41.8 5.8E+02 0.013 29.1 14.3 19 152-170 643-661 (1204)
84 PRK13106 ubiA prenyltransferas 41.7 3.2E+02 0.0068 26.0 10.7 20 109-128 90-109 (300)
85 KOG2532 Permease of the major 41.3 3.8E+02 0.0083 26.9 11.8 72 156-230 141-218 (466)
86 PRK10263 DNA translocase FtsK; 40.9 2.3E+02 0.005 33.0 10.6 26 186-211 159-184 (1355)
87 PRK07946 putative monovalent c 40.5 2.7E+02 0.0059 24.9 9.7 106 122-241 6-116 (163)
88 PRK06433 NADH dehydrogenase su 40.1 1.7E+02 0.0036 23.4 7.0 41 193-233 42-82 (88)
89 PRK12882 ubiA prenyltransferas 39.3 3E+02 0.0065 25.1 11.1 26 109-134 77-102 (276)
90 PRK12874 ubiA prenyltransferas 38.9 2.5E+02 0.0054 26.4 9.2 22 109-130 88-109 (291)
91 TIGR00806 rfc RFC reduced fola 38.7 1.8E+02 0.004 30.2 8.9 58 150-210 118-178 (511)
92 TIGR00899 2A0120 sugar efflux 38.7 2.8E+02 0.0061 24.6 12.3 45 175-219 117-165 (375)
93 CHL00016 ndhG NADH dehydrogena 38.1 1.5E+02 0.0033 26.2 7.2 40 193-232 46-85 (182)
94 PF01384 PHO4: Phosphate trans 38.1 3.6E+02 0.0078 25.9 10.3 81 111-192 18-105 (326)
95 PRK07566 bacteriochlorophyll/c 36.8 3.7E+02 0.008 25.4 10.3 26 109-134 104-129 (314)
96 TIGR00711 efflux_EmrB drug res 36.6 3.6E+02 0.0077 25.1 11.6 47 162-210 109-155 (485)
97 PRK11902 ampG muropeptide tran 36.5 3.5E+02 0.0076 25.0 13.2 66 155-222 106-174 (402)
98 PRK10457 hypothetical protein; 36.2 68 0.0015 25.3 4.3 47 182-228 32-81 (82)
99 PF11286 DUF3087: Protein of u 35.1 1.2E+02 0.0027 27.1 6.2 56 175-230 8-73 (165)
100 PRK10755 sensor protein BasS/P 33.2 3.7E+02 0.0081 24.4 9.7 35 112-146 2-36 (356)
101 PRK12505 putative monovalent c 32.8 1.6E+02 0.0036 26.0 6.5 77 125-206 27-107 (159)
102 KOG4737 ATPase membrane sector 32.7 31 0.00066 33.7 2.1 39 204-247 282-321 (326)
103 TIGR00891 2A0112 putative sial 32.7 3.6E+02 0.0077 24.0 13.0 46 160-207 117-162 (405)
104 PRK12848 ubiA 4-hydroxybenzoat 32.5 4.1E+02 0.0088 24.6 10.8 24 109-132 83-106 (282)
105 TIGR00710 efflux_Bcr_CflA drug 32.3 3.6E+02 0.0078 23.9 13.0 55 161-217 111-167 (385)
106 PRK12888 ubiA prenyltransferas 32.3 4.3E+02 0.0092 24.8 9.8 22 109-130 80-101 (284)
107 PRK10489 enterobactin exporter 31.5 4.2E+02 0.0092 24.5 12.7 50 174-223 139-190 (417)
108 TIGR00898 2A0119 cation transp 30.8 4.7E+02 0.01 24.8 13.3 56 161-219 198-253 (505)
109 PRK13592 ubiA prenyltransferas 30.2 4E+02 0.0086 26.0 9.1 42 88-135 70-111 (299)
110 PF04678 DUF607: Protein of un 30.1 2.6E+02 0.0057 24.5 7.4 48 178-227 89-141 (180)
111 COG2836 Uncharacterized conser 29.8 2.8E+02 0.006 26.3 7.8 48 180-229 53-100 (232)
112 PRK06814 acylglycerophosphoeth 29.2 7.5E+02 0.016 26.6 13.0 47 162-210 127-173 (1140)
113 PRK12871 ubiA prenyltransferas 28.8 2.7E+02 0.0058 26.3 7.7 25 109-133 91-115 (297)
114 TIGR00880 2_A_01_02 Multidrug 28.3 2.3E+02 0.0051 20.5 12.9 69 153-223 61-131 (141)
115 PF04226 Transgly_assoc: Trans 28.1 1.2E+02 0.0026 21.5 4.1 43 184-228 2-47 (48)
116 PRK11652 emrD multidrug resist 27.8 4.7E+02 0.01 23.8 14.3 43 174-216 125-169 (394)
117 COG2215 ABC-type uncharacteriz 27.6 6E+02 0.013 25.0 10.4 31 123-153 54-84 (303)
118 PLN02878 homogentisate phytylt 27.4 5.7E+02 0.012 24.7 13.4 38 92-135 51-88 (280)
119 PF11127 DUF2892: Protein of u 27.1 1.8E+02 0.004 21.0 5.0 16 209-224 33-48 (66)
120 PF03547 Mem_trans: Membrane t 27.0 5.2E+02 0.011 24.1 12.0 16 190-205 311-327 (385)
121 COG1173 DppC ABC-type dipeptid 26.5 4.5E+02 0.0098 24.9 8.7 84 100-188 69-158 (289)
122 PF03203 MerC: MerC mercury re 25.8 1.3E+02 0.0028 24.4 4.4 44 175-223 60-109 (116)
123 PRK15402 multidrug efflux syst 25.5 5.3E+02 0.011 23.7 13.2 60 159-220 117-178 (406)
124 PRK12869 ubiA protoheme IX far 24.9 5.6E+02 0.012 23.7 11.9 26 109-134 77-102 (279)
125 COG5249 RER1 Golgi protein inv 24.8 1.7E+02 0.0036 26.5 5.1 41 184-227 36-76 (180)
126 PF02535 Zip: ZIP Zinc transpo 24.7 5.2E+02 0.011 23.3 14.2 22 210-231 268-289 (317)
127 COG1269 NtpI Archaeal/vacuolar 24.1 5.1E+02 0.011 27.4 9.3 58 160-226 456-513 (660)
128 PRK12870 ubiA 4-hydroxybenzoat 24.0 4.1E+02 0.0088 24.9 7.9 26 109-134 87-112 (290)
129 TIGR01475 ubiA_other putative 24.0 5.7E+02 0.012 23.5 10.5 22 109-130 77-98 (282)
130 PRK12324 phosphoribose diphosp 23.9 6.4E+02 0.014 24.0 10.8 25 109-133 87-111 (295)
131 PRK10091 MFS transport protein 23.8 5.7E+02 0.012 23.4 13.7 44 174-217 120-165 (382)
132 COG0738 FucP Fucose permease [ 23.5 7.7E+02 0.017 25.3 10.1 13 122-134 246-258 (422)
133 COG2155 Uncharacterized conser 23.3 91 0.002 25.0 2.9 49 182-230 18-68 (79)
134 COG0428 Predicted divalent hea 23.1 3.4E+02 0.0074 25.3 7.2 78 149-230 149-234 (266)
135 PRK03557 zinc transporter ZitB 22.9 3.4E+02 0.0074 25.5 7.2 19 211-229 189-207 (312)
136 PF09788 Tmemb_55A: Transmembr 22.9 2.8E+02 0.0061 26.6 6.5 51 175-225 191-249 (256)
137 PRK14995 methyl viologen resis 22.4 7.2E+02 0.016 24.1 13.6 39 175-215 125-167 (495)
138 COG4709 Predicted membrane pro 22.1 3.4E+02 0.0074 25.1 6.7 25 113-137 77-101 (195)
139 COG3763 Uncharacterized protei 21.9 1.2E+02 0.0027 23.9 3.3 20 120-139 5-24 (71)
140 PRK06638 NADH:ubiquinone oxido 21.9 3.2E+02 0.0069 24.4 6.5 38 194-231 43-80 (198)
141 PRK12873 ubiA prenyltransferas 21.4 7.2E+02 0.016 23.8 9.2 23 109-131 85-107 (294)
142 PF12349 Sterol-sensing: Stero 21.2 5.1E+02 0.011 21.9 13.0 51 121-171 12-63 (153)
143 PF14159 CAAD: CAAD domains of 21.1 4.2E+02 0.0091 21.1 6.4 58 175-232 12-73 (90)
144 PF07438 DUF1514: Protein of u 20.5 1.7E+02 0.0038 22.8 3.9 33 124-156 2-41 (66)
145 PF05977 MFS_3: Transmembrane 20.3 9.2E+02 0.02 24.5 13.7 117 122-240 286-409 (524)
146 TIGR01523 ATPase-IID_K-Na pota 20.3 6.6E+02 0.014 28.2 9.6 22 178-199 985-1006(1053)
147 PF03729 DUF308: Short repeat 20.2 3.1E+02 0.0067 19.0 5.7 34 196-229 5-42 (72)
148 PRK01030 tetrahydromethanopter 20.1 3.6E+02 0.0078 26.0 6.7 55 175-229 188-243 (264)
149 TIGR01129 secD protein-export 20.0 4.7E+02 0.01 25.9 7.8 29 139-167 294-322 (397)
No 1
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=100.00 E-value=1.6e-49 Score=369.72 Aligned_cols=163 Identities=39% Similarity=0.619 Sum_probs=157.5
Q ss_pred cchhhhhhhhHHHHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHH
Q 024079 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG 189 (273)
Q Consensus 110 ~~is~keA~~wS~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~g 189 (273)
.++|+|||+.||++|+++|++||+++|++.|.+.+.||+|||++|++||+||+|||++||++|++|+++|||+|+|||+|
T Consensus 28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g 107 (302)
T TIGR03718 28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG 107 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCCCCCccHHHHHHHhhccccccccCceeEEEeeccee
Q 024079 190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFL 269 (273)
Q Consensus 190 Aiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~ee~~d~~~n~ivk~lrk~lPvt~~y~G~kff~v~~~g~l 269 (273)
|++||++||++|++++++|+|++++||+||+|+|+|++++++|++|+++|+.+||+||++|+|++|||++| ++|.||.+
T Consensus 108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f-~~~~~g~~ 186 (302)
T TIGR03718 108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRF-FVRENGKR 186 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCce-eeeecCce
Confidence 99999999999999999999999999999999999999988777788899999999999999999999995 78899999
Q ss_pred eccC
Q 024079 270 HLTS 273 (273)
Q Consensus 270 ~~~~ 273 (273)
++|+
T Consensus 187 ~~tp 190 (302)
T TIGR03718 187 YATP 190 (302)
T ss_pred ecCc
Confidence 9884
No 2
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1.4e-24 Score=198.54 Aligned_cols=120 Identities=21% Similarity=0.244 Sum_probs=106.7
Q ss_pred HhhHhhhhcChhhH--HHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024079 131 FGLGVGFIEGASKA--SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF 208 (273)
Q Consensus 131 Fg~~i~~~~G~~~a--~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f 208 (273)
|+...|+..+.+.+ .+|+|+|++|++||+||++|+++++++ +|+++|||+++||+++|++||+++++.|+++++.+
T Consensus 2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~ 79 (254)
T COG0861 2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLT 79 (254)
T ss_pred chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666766665554 599999999999999999999999996 78999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhhhccCCCCCCCccHHHHHHHhhccccccccCceeEE
Q 024079 209 EAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLY 262 (273)
Q Consensus 209 ~wI~~ifGafLL~tg~K~~~~~ee~~d~~~n~ivk~lrk~lPvt~~y~G~kff~ 262 (273)
+|++++||++|+|+++||+.+++++. .|+.++.. ++++|++++.
T Consensus 80 ~~l~~~fg~~L~~~~~~ll~~~~~~~-------~k~~~~~~---~~~~~~~~~~ 123 (254)
T COG0861 80 QPLLYIFGLYLLWRDIKLLLGGLFLL-------FKATKELH---ERLEGEEFFV 123 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHH-------HHHHHHHh---hhhccccccc
Confidence 99999999999999999999876543 68888877 8899999755
No 3
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=99.92 E-value=7.6e-25 Score=190.84 Aligned_cols=104 Identities=35% Similarity=0.543 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Q 024079 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227 (273)
Q Consensus 148 ~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~ 227 (273)
+|+|++|++||+||++|+++++++ +|+++|+|+++||+.+|+++|++|+++|+++++.|+|++++||++|+|+|+|++
T Consensus 1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL 78 (183)
T ss_pred CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999996 999999999999999999999999999999999779999999999999999999
Q ss_pred hccCCCCCCCccHHHHHHHhhccccccc
Q 024079 228 ASEEDDTDLSDNFIVKTCQRFIPVTSNV 255 (273)
Q Consensus 228 ~~~ee~~d~~~n~ivk~lrk~lPvt~~y 255 (273)
++++ ++|+ +|...++.++..|.++++
T Consensus 79 ~~~~-~~d~-~~~~~~~~~~~~~~~~~~ 104 (183)
T PF03741_consen 79 HEER-DEDP-ENAEVEEEKKFFPVSKSS 104 (183)
T ss_pred Hhcc-cccc-chhhhhhhhccccchhHH
Confidence 9876 4455 777788888888776654
No 4
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=99.88 E-value=1.8e-22 Score=180.88 Aligned_cols=81 Identities=31% Similarity=0.508 Sum_probs=75.5
Q ss_pred HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccC
Q 024079 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE 231 (273)
Q Consensus 152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~e 231 (273)
++|++||+||++|++++++ ++|+++|+|+++||+.||++||++|+++|+++++ ++|+.++||++|+|+|+|++++++
T Consensus 2 ~lE~vLS~DN~~via~~~~--~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k~l~~~~ 78 (215)
T TIGR03716 2 ILEGLLSADNALVLAVMVK--HLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIKHFRKKK 78 (215)
T ss_pred chhHHHHhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6899999999999999999 5999999999999999999999999999999997 789999999999999999999765
Q ss_pred CCCC
Q 024079 232 DDTD 235 (273)
Q Consensus 232 e~~d 235 (273)
++++
T Consensus 79 ~~~~ 82 (215)
T TIGR03716 79 KGKE 82 (215)
T ss_pred cccc
Confidence 4433
No 5
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=99.80 E-value=2.6e-19 Score=155.47 Aligned_cols=86 Identities=26% Similarity=0.419 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024079 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226 (273)
Q Consensus 147 f~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~ 226 (273)
+++..++|.+||+||++|++++.+ ++|+++|+|++.||+++|+++|++|+++|.++++ ++|+.++||++|+|+|+||
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~--~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAAR--NLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL 78 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999766 7999999999999999999999999999999998 8999999999999999999
Q ss_pred hhccCCCCC
Q 024079 227 FASEEDDTD 235 (273)
Q Consensus 227 ~~~~ee~~d 235 (273)
+.++++++|
T Consensus 79 l~~~~~~~~ 87 (176)
T TIGR03717 79 LLEEEEEQG 87 (176)
T ss_pred Hhccccccc
Confidence 987654444
No 6
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=5.5e-18 Score=158.54 Aligned_cols=139 Identities=23% Similarity=0.262 Sum_probs=115.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhHhhhhcChh-hHHHHHHHH--HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHH
Q 024079 112 ESYTSSVKTVAFCVSTAVAFGLGVGFIEGAS-KASEFFAGY--ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA 188 (273)
Q Consensus 112 is~keA~~wS~~wI~LAllFg~~i~~~~G~~-~a~ef~tgy--lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~ 188 (273)
|+..+.++||.+..++|++.++|.+|..|.. ...-|++.+ ++|.|||.||++|++.|.+. +.+.||||.|.|||+
T Consensus 1 m~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIl 78 (346)
T COG2899 1 MTAFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGIL 78 (346)
T ss_pred CchHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHH
Confidence 3567889999999999999999999987654 455566666 89999999999999999995 999999999999999
Q ss_pred HHHH-HHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHhhhhhccCCCCCCCccHHHH
Q 024079 189 GAIV-FRLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVK 243 (273)
Q Consensus 189 gAiv-~RiIfI~~G~~Li~~------------------------f~wI~~ifGafLL~tg~K~~~~~ee~~d~~~n~ivk 243 (273)
+|+. ||++|+++-++.-.. .+.|..+||.||++.+.+++.+.|+|.+ | .|
T Consensus 79 IAVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~h----W-l~ 153 (346)
T COG2899 79 IAVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVH----W-LK 153 (346)
T ss_pred HHHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhcCchhhhhhhHHHHHHHHHHhcCccccch----h-hh
Confidence 9997 999999886655431 1248899999999999999998777665 6 78
Q ss_pred HHHhhccccccccC
Q 024079 244 TCQRFIPVTSNVLC 257 (273)
Q Consensus 244 ~lrk~lPvt~~y~G 257 (273)
|+++.+--..+.++
T Consensus 154 ~iE~~~arig~~~~ 167 (346)
T COG2899 154 WIERPLARIGRLGG 167 (346)
T ss_pred hHHHHHHHhcCCCC
Confidence 88887755544444
No 7
>PRK14013 hypothetical protein; Provisional
Probab=99.76 E-value=1.4e-17 Score=158.08 Aligned_cols=133 Identities=22% Similarity=0.213 Sum_probs=109.4
Q ss_pred hhhhhHHHHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHH-HH
Q 024079 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VF 193 (273)
Q Consensus 115 keA~~wS~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAi-v~ 193 (273)
.+.++||.++..++++.+.++++ .+.....++..++|.+||+||++|++.+.+ ++|++||+|+|.|||++|+ .|
T Consensus 3 ~~~f~~s~~~t~~~l~~~~~~g~---~~~~~~~~~L~vLEisLsfDNaIvnA~vl~--~m~~~wq~~fl~~Gi~iAvFgm 77 (338)
T PRK14013 3 LRYFRWSFIVTVIGLVLAAWLGG---LSALFIVAILAVLEISLSFDNAVVNATVLK--RMSPKWQKRFLTWGILIAVFGM 77 (338)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh--hCCHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999998877764 355556677779999999999999999999 5999999999999999998 89
Q ss_pred HHHHHHHHHHHHHh----------------h--------hHHHHHHHHHHHHHHhhhhhccCCCCCCCccHHHHHHHhhc
Q 024079 194 RLSLILLGTATLQR----------------F--------EAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFI 249 (273)
Q Consensus 194 RiIfI~~G~~Li~~----------------f--------~wI~~ifGafLL~tg~K~~~~~ee~~d~~~n~ivk~lrk~l 249 (273)
|++|+++-+++... | +.+..+||+||++.+.+.+.++|+|.+ | .+|++|.+
T Consensus 78 Rlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~----W-l~~iE~~~ 152 (338)
T PRK14013 78 RLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDVH----W-LGWIERPL 152 (338)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCcc----c-hhHHHHHH
Confidence 99999998877662 1 148899999999999999997776665 6 67777666
Q ss_pred cccccccC
Q 024079 250 PVTSNVLC 257 (273)
Q Consensus 250 Pvt~~y~G 257 (273)
.-..+.++
T Consensus 153 ~~~g~~~~ 160 (338)
T PRK14013 153 AKLGKLDG 160 (338)
T ss_pred HHhcCccc
Confidence 44444443
No 8
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=99.11 E-value=1.2e-10 Score=109.42 Aligned_cols=91 Identities=22% Similarity=0.302 Sum_probs=73.6
Q ss_pred chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHh----------------h--------hHHHH
Q 024079 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQR----------------F--------EAVNL 213 (273)
Q Consensus 159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~----------------f--------~wI~~ 213 (273)
.||++|+|.+.+. +.+.||+|.|.|||++|+. ||++|+++-+++-.. | +.+..
T Consensus 1 FDNAVVNA~vLk~--Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa 78 (294)
T PF04332_consen 1 FDNAVVNATVLKR--MSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA 78 (294)
T ss_pred CCchhhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence 5999999999995 9999999999999999996 999999997776652 1 23888
Q ss_pred HHHHHHHHHHhhhhhccCCCCCCCccHHHHHHHhhccccccccC
Q 024079 214 VLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLC 257 (273)
Q Consensus 214 ifGafLL~tg~K~~~~~ee~~d~~~n~ivk~lrk~lPvt~~y~G 257 (273)
+||+||++.+.+.+.++++ .+ | .+|++|.+.-..+.++
T Consensus 79 FGG~FLlmvfL~f~f~~~k-~~----W-l~~iE~~l~~~g~~~~ 116 (294)
T PF04332_consen 79 FGGMFLLMVFLDFFFDEEK-VH----W-LRWIERPLAKLGKLDA 116 (294)
T ss_pred HhHHHHHHHHHheeecCCc-ce----e-ehHHHHHHHHcCCccc
Confidence 9999999999999987665 33 6 5777777644444433
No 9
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=97.12 E-value=0.0051 Score=54.25 Aligned_cols=69 Identities=26% Similarity=0.310 Sum_probs=57.3
Q ss_pred HHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Q 024079 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA 228 (273)
Q Consensus 151 ylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~ 228 (273)
.+.+.+.|+||+.....+.+ +--++..|.+.|+. ||...-.+ +.++++|+|+.+.++++|.|+|.||+.
T Consensus 113 ~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~~-~~~l~~~p~l~~~~~~~L~~ig~~li~ 182 (183)
T PF03741_consen 113 ELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFLL-AKLLERFPYLKYLAAAILGFIGVKLIL 182 (183)
T ss_pred HHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 37889999999998888773 55778889888886 77655544 557889999999999999999999975
No 10
>PRK10995 inner membrane protein; Provisional
Probab=97.08 E-value=0.0048 Score=55.37 Aligned_cols=70 Identities=11% Similarity=0.192 Sum_probs=62.0
Q ss_pred chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~~ 230 (273)
+.|+-+|....+ +.++++|+|+.....+.|.+.=++|.+.|..+++-| +.+...||++|++.|++|++++
T Consensus 22 ~g~~pif~~lt~--~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 22 LTTVALFLGLSG--NMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred hhhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 468889999888 489999999999999999998899999999999844 4789999999999999999754
No 11
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=96.95 E-value=0.0088 Score=52.50 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=54.1
Q ss_pred HHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhc
Q 024079 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 151 ylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~ 229 (273)
.+.+.+.|+||+.....+.+. +-.++..|+..++.+=...--.-..++++|+++.+.++++|.|+|.||+.+
T Consensus 104 ~~~D~~fS~DsV~a~~~~~~~-------~~~li~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ig~kl~~~ 175 (176)
T TIGR03717 104 VIADAVMSLDNVLAVAGAAHG-------HLGLLIFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGYVAGEMIVT 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 378889999999988776652 446778888777742222222345567789999999999999999999863
No 12
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=96.94 E-value=0.012 Score=53.66 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=59.7
Q ss_pred HHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhh
Q 024079 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFA 228 (273)
Q Consensus 150 gylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~ 228 (273)
-.+.+.+.|+||+.....+.+ ..-+++.|.+.++. ||..--.+ +.++++|+++.+.+.++|.|+|.||+.
T Consensus 102 I~~~DlvFSlDSV~A~~git~--------~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~kLil 172 (215)
T TIGR03716 102 VELMDIAFSVDSILAAVALSG--------QFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGVKLLL 172 (215)
T ss_pred HHHHHHHHHhhhHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347889999999998887754 44578888888885 88776666 568899999999999999999999998
Q ss_pred cc
Q 024079 229 SE 230 (273)
Q Consensus 229 ~~ 230 (273)
+.
T Consensus 173 ~~ 174 (215)
T TIGR03716 173 ET 174 (215)
T ss_pred HH
Confidence 64
No 13
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=96.82 E-value=0.028 Score=52.40 Aligned_cols=70 Identities=24% Similarity=0.322 Sum_probs=59.6
Q ss_pred HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhcc
Q 024079 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~ 230 (273)
+++.+-|+||+.....+.+ +.-+++.|.+.|+. ||...-.+ +.++++++++.+.+.++|+|+|.||+.++
T Consensus 142 i~D~vFSlDSV~Aa~g~~~--------~~~im~~a~i~aI~~m~~aa~~l-~~ll~r~p~l~~~~~~iL~~IG~kli~~~ 212 (254)
T COG0861 142 LADLVFSLDSVIAAVGMAG--------HPFVMVTAVIFAILVMRFAAFLL-ARLLERHPTLKYLALVILLFIGVKLILEG 212 (254)
T ss_pred HHHHHHhhhHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHH-HHHHHHchHHHHHHHHHHHHHHHHHHHhh
Confidence 7889999999998887774 55789999999995 77765544 46788999999999999999999999875
No 14
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=96.63 E-value=0.019 Score=51.26 Aligned_cols=71 Identities=14% Similarity=0.319 Sum_probs=62.8
Q ss_pred hchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 158 SvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~~ 230 (273)
-..|+-+|....+ +.++++|+|+.....+.|.+.=++|.++|-.+++.| +-....||+.|+.+|++|+..+
T Consensus 20 Pig~ipvfl~lt~--~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 20 PIGNIPIFISLTE--YYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred cchHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4578999999999 489999999999999999998899999999999854 4589999999999999998653
No 15
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=96.62 E-value=0.015 Score=51.80 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=62.8
Q ss_pred chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~~ 230 (273)
..|+.+|....+ +.++++|+|+..-..+.|.+.=.+|.++|-.+++-| +-+...||+.|+..|++|+..+
T Consensus 18 ~g~ip~f~~lt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~ 91 (203)
T PF01914_consen 18 IGNIPIFLSLTK--GMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGS 91 (203)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 578899999999 489999999999999999999999999999999955 4589999999999999999764
No 16
>PRK10739 putative antibiotic transporter; Provisional
Probab=96.42 E-value=0.031 Score=50.06 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=62.7
Q ss_pred hchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 158 SvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~~ 230 (273)
-..|+-+|..+.+ +.++++|+|+..-..+.|.+.=++|.++|-.+++-| +-....||+.|+..|++|+.++
T Consensus 17 Pig~ipiflslt~--~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 17 PLGNLPIFMSVLK--HLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred HhhHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3578999999998 489999999999999999988889999999999855 4589999999999999999765
No 17
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=96.39 E-value=0.072 Score=46.37 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=48.4
Q ss_pred hhchhHHHHHHHhCcCCCChhhhh-HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHHHHHHHHHHHhhhhhcc
Q 024079 157 LSVDNLFVFVLIFKYFKVPVMYQN-RVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 157 LSvDNlfVfalIf~~FkVP~~~Q~-RvL~~GI~gAiv~RiIfI~~G~-~Li~~f~w----I~~ifGafLL~tg~K~~~~~ 230 (273)
=+-||+++...-.++ + .|+ -....|+..+.+.=+++...|. .++++++| +.++|+++|+|.|+|+++.+
T Consensus 20 PGP~~~~v~~~~~~~-G----~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 20 PGPNNILALSSATSH-G----FRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSP 94 (195)
T ss_pred CChHHHHHHHHHHHh-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 377999999876653 1 122 2355677777766555555566 56665554 78999999999999999864
No 18
>PRK11111 hypothetical protein; Provisional
Probab=96.34 E-value=0.035 Score=50.25 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=60.9
Q ss_pred chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhc
Q 024079 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~ 229 (273)
+.|+-+|....+ +.++++|+|+.....+.|.+.=++|.++|-++++-| +-....||+.|+.+|++|+..
T Consensus 24 ig~ipiflslt~--~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 24 VGILPVFISMTS--HQTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred chhHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 568889999888 479999999999999999988889999999999854 458999999999999999964
No 19
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=96.02 E-value=0.042 Score=49.61 Aligned_cols=72 Identities=24% Similarity=0.310 Sum_probs=63.7
Q ss_pred hhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 157 LSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f----~wI~~ifGafLL~tg~K~~~~~ 230 (273)
=...|+-+|..+.+. .|++.|+|+..-..+.|.+.=.+|.++|-++++-| +-....||..|.+.|++|+..+
T Consensus 19 dP~G~ipvf~slt~~--~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~ 94 (203)
T COG2095 19 DPIGNLPVFISLTKG--LSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGP 94 (203)
T ss_pred CCCchhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCC
Confidence 357899999999995 89999999999999999998899999999999844 3588999999999999998764
No 20
>PRK09304 arginine exporter protein; Provisional
Probab=95.67 E-value=0.13 Score=45.08 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhH----HHHHHHHHHHH
Q 024079 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFEA----VNLVLAGILLF 221 (273)
Q Consensus 147 f~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Li~~f~w----I~~ifGafLL~ 221 (273)
++.|+.+-..-+-||+++...-.+. .+.-....|+..+.++=+....+|.. +++.++| +.++|++||+|
T Consensus 9 ~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly 82 (207)
T PRK09304 9 FALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW 82 (207)
T ss_pred HHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777778999999875541 12345556666666666666666665 4666665 78899999999
Q ss_pred HHhhhhhcc
Q 024079 222 SSFKLFASE 230 (273)
Q Consensus 222 tg~K~~~~~ 230 (273)
.|+|+++++
T Consensus 83 Lg~~~~rs~ 91 (207)
T PRK09304 83 YGFGAFKTA 91 (207)
T ss_pred HHHHHHHHh
Confidence 999999864
No 21
>PRK10229 threonine efflux system; Provisional
Probab=95.59 E-value=0.15 Score=44.12 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=51.9
Q ss_pred HHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHHh
Q 024079 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSF 224 (273)
Q Consensus 150 gylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Li~~f~----wI~~ifGafLL~tg~ 224 (273)
+.++-.+=+-||++++..-.++ + ..+--....|+..+...=+++..+|.. +++.++ .+.++|++||+|.|+
T Consensus 12 ~~~~~~sPGP~~~~vi~~~~~~-G---~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlylg~ 87 (206)
T PRK10229 12 HIVALMSPGPDFFFVSQTAVSR-S---RKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWMGY 87 (206)
T ss_pred HHHHhcCCCchhHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778999998886664 1 112223445666666666666666774 555554 478999999999999
Q ss_pred hhhhcc
Q 024079 225 KLFASE 230 (273)
Q Consensus 225 K~~~~~ 230 (273)
++++++
T Consensus 88 ~~~~~~ 93 (206)
T PRK10229 88 QMLRGA 93 (206)
T ss_pred HHHHhc
Confidence 999854
No 22
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=95.53 E-value=0.041 Score=52.62 Aligned_cols=70 Identities=23% Similarity=0.230 Sum_probs=57.5
Q ss_pred HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhcc
Q 024079 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~ 230 (273)
+.+.+-|+||+.....+.+. +-+.+-|-+.|++ +|.+..+ -..++++|+++.+.++++|.++|.||+.++
T Consensus 200 ~~DlvFslDSIpAi~aiT~d--------~~iV~tsnifaIlgLR~lyf~-l~~ll~rf~~L~~~~a~iL~fIGvkmll~~ 270 (302)
T TIGR03718 200 TTDLIFAVDSIPAIFAITQD--------PFIVFTSNIFAILGLRSLYFL-LAGLLERFHYLKYGLAVILVFIGVKMLLHA 270 (302)
T ss_pred HHHHHHhhccHHHHHHhhcC--------CeEEehHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 67889999999998888763 3456666666665 9988666 556789999999999999999999999853
No 23
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=95.36 E-value=0.2 Score=44.38 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=50.6
Q ss_pred HHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhHHHHHHHHHHHHHHh
Q 024079 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSSF 224 (273)
Q Consensus 150 gylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~-~Li~~----f~wI~~ifGafLL~tg~ 224 (273)
..++-.+=+=||+.|+..-.+. -..+--..-.|+..+.+.=.+...+|. .++.. |..+.++|+++|+|.|+
T Consensus 13 ~~~~~~~PGP~~~~v~~~~~~~----G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg~ 88 (208)
T COG1280 13 ALVLAATPGPDNLLVLARSLSR----GRRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLGW 88 (208)
T ss_pred HHHHhcCCCccHHHHHHHHHHh----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3345555677999998876662 112223334455555556666666674 55554 44589999999999999
Q ss_pred hhhhcc
Q 024079 225 KLFASE 230 (273)
Q Consensus 225 K~~~~~ 230 (273)
|+++.+
T Consensus 89 ~~~ra~ 94 (208)
T COG1280 89 KALRAG 94 (208)
T ss_pred HHHhcc
Confidence 999864
No 24
>TIGR00948 2a75 L-lysine exporter.
Probab=95.17 E-value=0.16 Score=43.11 Aligned_cols=67 Identities=15% Similarity=0.044 Sum_probs=47.8
Q ss_pred hchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhh----hHHHHHHHHHHHHHHhhhhhcc
Q 024079 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQRF----EAVNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 158 SvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~-Li~~f----~wI~~ifGafLL~tg~K~~~~~ 230 (273)
+-||++|+..-.+. .+--....|+..+...=+++..+|.. +++.+ ..+.++||+||+|.|+|+++++
T Consensus 6 GP~~~~vi~~~~~~------~~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 6 GAQNAFVLRQGIRR------EHVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred cchHHHHHHHHHcc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888887762 12233556666666677677777775 55544 4589999999999999999864
No 25
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=94.42 E-value=0.22 Score=44.77 Aligned_cols=72 Identities=21% Similarity=0.294 Sum_probs=46.4
Q ss_pred hhchhHHHHHHHhCcCCCChhhhhHHHHHH-HHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccC
Q 024079 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYG-IAGAIVFR--LSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE 231 (273)
Q Consensus 157 LSvDNlfVfalIf~~FkVP~~~Q~RvL~~G-I~gAiv~R--iIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~e 231 (273)
=.+|+++|.+..|+. .+...|+|-..+| .+|..++= .++...|..++- =+|+.-+.|+.=++.|+|.+.++|
T Consensus 4 TniDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~ip-~~wiLGlLGliPI~lGi~~l~~~~ 78 (191)
T PF03596_consen 4 TNIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFIP-PEWILGLLGLIPIYLGIKALFSGE 78 (191)
T ss_pred ecHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 368999999999996 5555566777777 33332221 111222322221 269989999999999999776543
No 26
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=94.37 E-value=0.76 Score=39.88 Aligned_cols=73 Identities=11% Similarity=0.134 Sum_probs=48.3
Q ss_pred HHHHHhhchhHHHHHHHhCcCCCChhhhhHHH--HHHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHHh
Q 024079 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSF 224 (273)
Q Consensus 152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL--~~GI~gAiv~RiIfI~~G~~-Li~~f~----wI~~ifGafLL~tg~ 224 (273)
++=.+=+-||+.|+..-.+. -+++.+ ..|+..+...=++...+|.. +++.++ .+.++|++||+|.|+
T Consensus 15 ~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~lg~ 88 (205)
T PRK10520 15 ILSLSPGSGAINTMSTSISH------GYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWLGI 88 (205)
T ss_pred HHhcCCchhHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34445566888888765542 123333 34666666666666666665 555444 488999999999999
Q ss_pred hhhhcc
Q 024079 225 KLFASE 230 (273)
Q Consensus 225 K~~~~~ 230 (273)
|+++++
T Consensus 89 ~~~~s~ 94 (205)
T PRK10520 89 QQWRAA 94 (205)
T ss_pred HHHhCC
Confidence 999864
No 27
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=94.30 E-value=0.35 Score=40.95 Aligned_cols=68 Identities=24% Similarity=0.211 Sum_probs=42.8
Q ss_pred hhchhHHHHHHHhCcCCCChhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHh-h----hHHHHHHHHHHHHHHhhhhhc
Q 024079 157 LSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTATLQR-F----EAVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 157 LSvDNlfVfalIf~~FkVP~~~Q~RvL--~~GI~gAiv~RiIfI~~G~~Li~~-f----~wI~~ifGafLL~tg~K~~~~ 229 (273)
.+-+|+.++..-.++ -+++.+ ..|+..+...=++....|...+.+ . .++.++||++|+|.|++++++
T Consensus 7 PGP~~~~~i~~~~~~------G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~ 80 (191)
T PF01810_consen 7 PGPVNLLVISNGLRK------GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS 80 (191)
T ss_pred CCHHHHHHHHHHHHh------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345777777765552 122333 334444444555555566665533 3 458999999999999999987
Q ss_pred c
Q 024079 230 E 230 (273)
Q Consensus 230 ~ 230 (273)
+
T Consensus 81 ~ 81 (191)
T PF01810_consen 81 K 81 (191)
T ss_pred c
Confidence 4
No 28
>COG1971 Predicted membrane protein [Function unknown]
Probab=93.77 E-value=0.54 Score=42.61 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHH
Q 024079 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILL 220 (273)
Q Consensus 146 ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f-----~wI~~ifGafLL 220 (273)
++++..++-.++|.||.-|=.. -..-+.+++ -+..|..|+...+ +-.++.++|..+=+-+ .|-.++++++|+
T Consensus 2 ~~~sllllA~alsmDAFav~l~-~G~~~~k~~-~~~~L~ia~~fG~-f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~ 78 (190)
T COG1971 2 NIISLLLLAIALSMDAFAVSLG-KGLAKHKIR-FKEALVIALIFGV-FQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLI 78 (190)
T ss_pred cHHHHHHHHHHHhhHHHHHHHH-hhhhhcccc-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778899999999655332 221122222 2455666665554 5667777776554433 366788999999
Q ss_pred HHHhhhhhc
Q 024079 221 FSSFKLFAS 229 (273)
Q Consensus 221 ~tg~K~~~~ 229 (273)
+.|.+|+++
T Consensus 79 ~lG~~mI~e 87 (190)
T COG1971 79 ILGLKMIIE 87 (190)
T ss_pred HHHHHHHHH
Confidence 999999876
No 29
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=93.62 E-value=0.65 Score=39.29 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=43.0
Q ss_pred chhHHHHHHHhCcCCCChhhhhHH--HHHHHHHHHHHHHHHHHHHHH-HHHhhh----HHHHHHHHHHHHHHhhhhhc
Q 024079 159 VDNLFVFVLIFKYFKVPVMYQNRV--LSYGIAGAIVFRLSLILLGTA-TLQRFE----AVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 159 vDNlfVfalIf~~FkVP~~~Q~Rv--L~~GI~gAiv~RiIfI~~G~~-Li~~f~----wI~~ifGafLL~tg~K~~~~ 229 (273)
-||++++..-.+. . +++. ...|+..+.+.=++...+|.. +++.++ .+.++||++|+|.|++++++
T Consensus 4 P~~~~~~~~~~~~-----G-~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~ 75 (185)
T TIGR00949 4 PNFFVVMQTSLSS-----G-RRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRK 75 (185)
T ss_pred cchHHHHHHHHHh-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677777665442 2 2333 445566666666666666654 555444 48899999999999999984
No 30
>PRK10958 leucine export protein LeuE; Provisional
Probab=93.61 E-value=0.63 Score=41.11 Aligned_cols=70 Identities=17% Similarity=0.164 Sum_probs=47.4
Q ss_pred HHhhchhHHHHHHHhCcCCCChhhhhHHH--HHHHHHHHHHHHHHHHHHHHH-HHhh----hHHHHHHHHHHHHHHhhhh
Q 024079 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTAT-LQRF----EAVNLVLAGILLFSSFKLF 227 (273)
Q Consensus 155 ~sLSvDNlfVfalIf~~FkVP~~~Q~RvL--~~GI~gAiv~RiIfI~~G~~L-i~~f----~wI~~ifGafLL~tg~K~~ 227 (273)
.+=+-||++|+..-.+. -+++.+ ..|+..+.+.=++...+|... ++.+ ..+.++||++|+|.|+|.+
T Consensus 22 ~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~~~~ 95 (212)
T PRK10958 22 LLPGPNSLYVLSTAARR------GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGVKML 95 (212)
T ss_pred cCCchHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999998886653 123333 345555555666666666654 4344 4589999999999999999
Q ss_pred hcc
Q 024079 228 ASE 230 (273)
Q Consensus 228 ~~~ 230 (273)
+++
T Consensus 96 ~~~ 98 (212)
T PRK10958 96 RAA 98 (212)
T ss_pred Hhh
Confidence 864
No 31
>PRK11469 hypothetical protein; Provisional
Probab=92.42 E-value=1.4 Score=39.08 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-hHHHHHHHHHHH
Q 024079 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILL----GTATLQRF-EAVNLVLAGILL 220 (273)
Q Consensus 146 ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~----G~~Li~~f-~wI~~ifGafLL 220 (273)
++++..++=.+||+||..|=...=. +.++...++.+...+..+. +-.+++++ |..+-+.. ++-..+++..|+
T Consensus 2 ~~~~i~llaialsmDaF~v~ia~G~--~~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~ 78 (188)
T PRK11469 2 NITATVLLAFGMSMDAFAASIGKGA--TLHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLI 78 (188)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhh--cccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778889999999866544221 2333333444444444443 34555554 44333221 244577888999
Q ss_pred HHHhhhhhc
Q 024079 221 FSSFKLFAS 229 (273)
Q Consensus 221 ~tg~K~~~~ 229 (273)
+.|.+|+++
T Consensus 79 ~lG~~mi~e 87 (188)
T PRK11469 79 FLGGRMIIE 87 (188)
T ss_pred HHHHHHHHH
Confidence 999999875
No 32
>COG1279 Lysine efflux permease [General function prediction only]
Probab=91.76 E-value=1.9 Score=39.57 Aligned_cols=71 Identities=23% Similarity=0.249 Sum_probs=48.5
Q ss_pred HHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhH----HHHHHHHHHHH
Q 024079 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT----ATLQRFEA----VNLVLAGILLF 221 (273)
Q Consensus 150 gylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~----~Li~~f~w----I~~ifGafLL~ 221 (273)
|.-+=..+++.|+||+-.-.+ |+++|..-++ +.+.=+++|.+|+ .++++-+| +.+.|.+||+|
T Consensus 12 ~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~-c~i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~ 82 (202)
T COG1279 12 GASLILPIGAQNAFVLNQGIR--------REYVLPIALL-CAISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLY 82 (202)
T ss_pred HHHHHHhccchhHHHHHHHHh--------hccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 334556789999999987544 4666655444 4455666665543 34444455 67888999999
Q ss_pred HHhhhhhc
Q 024079 222 SSFKLFAS 229 (273)
Q Consensus 222 tg~K~~~~ 229 (273)
.|++.+++
T Consensus 83 yg~~a~~~ 90 (202)
T COG1279 83 YGLLALKS 90 (202)
T ss_pred HHHHHHHh
Confidence 99999876
No 33
>PRK11469 hypothetical protein; Provisional
Probab=90.49 E-value=3.7 Score=36.47 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhHhhhhc----Chh-------hHHHHHHHHHHHHHhhchhHHH-HHHHhCcCCCChhhhhHHHHHHHHHH
Q 024079 123 FCVSTAVAFGLGVGFIE----GAS-------KASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA 190 (273)
Q Consensus 123 ~wI~LAllFg~~i~~~~----G~~-------~a~ef~tgylLE~sLSvDNlfV-falIf~~FkVP~~~Q~RvL~~GI~gA 190 (273)
=|++..+++.+++|... +.+ ....+....++=.++|+||+-| +..-+. ++|. -.-++..|+...
T Consensus 70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~~~~--g~~~--~~~~~~ig~~s~ 145 (188)
T PRK11469 70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFL--QVNI--IATALAIGCATL 145 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHh--hhhH--HHHHHHHHHHHH
Confidence 48888888877777432 111 1123455667888999999988 555554 3432 123344444433
Q ss_pred HHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHhhhhhc
Q 024079 191 IVFRLSLILLGTATLQRF-----EAVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 191 iv~RiIfI~~G~~Li~~f-----~wI~~ifGafLL~tg~K~~~~ 229 (273)
++..+|..+=.++ .|..+++|+.|+..|+|++.+
T Consensus 146 -----~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~ 184 (188)
T PRK11469 146 -----IMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWT 184 (188)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433211 367899999999999999864
No 34
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=90.29 E-value=2.7 Score=37.61 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=43.2
Q ss_pred HHHHHHHhhchhHHHHH-HHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHHHHHHHHhhh
Q 024079 150 GYILEQSLSVDNLFVFV-LIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFKL 226 (273)
Q Consensus 150 gylLE~sLSvDNlfVfa-lIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f-~-wI~~ifGafLL~tg~K~ 226 (273)
..++=.+||+|+..|=. .=.+. ++. .-+..+..|+.-+ +|=.+-.++|..+-+.+ . |-.+++++.|++.|.+|
T Consensus 3 i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~m 78 (206)
T TIGR02840 3 LLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWI 78 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 34677899999987733 32232 222 1223344444433 12222223344444333 2 46789999999999999
Q ss_pred hhc
Q 024079 227 FAS 229 (273)
Q Consensus 227 ~~~ 229 (273)
+.+
T Consensus 79 i~~ 81 (206)
T TIGR02840 79 IYN 81 (206)
T ss_pred HHH
Confidence 875
No 35
>COG2119 Predicted membrane protein [Function unknown]
Probab=88.77 E-value=1.8 Score=39.40 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=55.9
Q ss_pred chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhhhcc
Q 024079 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~--wI~~ifGafLL~tg~K~~~~~ 230 (273)
.|.-+.++++.+. +||++..+.|+.+|.. |-++-..+|.+..+-++ +..++.|..-+..|+|++.++
T Consensus 17 GDKT~lia~llA~-----r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~ed 86 (190)
T COG2119 17 GDKTQLIAMLLAM-----RYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIED 86 (190)
T ss_pred ccHHHHHHHHHHH-----hcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhccc
Confidence 6888888887764 4678889999999995 88888899999888556 788888888888999998875
No 36
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=88.24 E-value=3.1 Score=38.18 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHH-HHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 024079 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA-GAI--VFRLSLILLGTATLQRFEAVNLVLAGILLFS 222 (273)
Q Consensus 146 ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~-gAi--v~RiIfI~~G~~Li~~f~wI~~ifGafLL~t 222 (273)
.+.+...+=.+=++|-+++.++.|+.++. +.|+.=++.|=. |.+ ++-.++..++...+. =.|+.-.+|++=+|.
T Consensus 4 ~~v~sivly~aTaiD~lIiL~l~Far~~~--~k~~~~I~~GQyLGs~~lilaSL~~a~v~~fvp-~e~I~glLGLIPi~L 80 (205)
T COG4300 4 TVVSSIVLYIATAIDLLIILLLFFARRKS--RKDILHIYLGQYLGSVILILASLLFAFVLNFVP-EEWILGLLGLIPIYL 80 (205)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcc--cCcEEEEeHHHHHhHHHHHHHHHHHHHHHhhCc-HHHHHHHHhHHHHHH
Confidence 34556666778889999999999997555 334433444422 221 111122222222222 268988999999999
Q ss_pred HhhhhhccCCCCCCCccH
Q 024079 223 SFKLFASEEDDTDLSDNF 240 (273)
Q Consensus 223 g~K~~~~~ee~~d~~~n~ 240 (273)
|+|.+..+|+|+|.+.+.
T Consensus 81 Gik~l~~~d~d~e~~~~e 98 (205)
T COG4300 81 GIKVLILGDDDGEEEAKE 98 (205)
T ss_pred hhHHhhcccCcCchhhhH
Confidence 999977655544433333
No 37
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=88.08 E-value=13 Score=32.32 Aligned_cols=71 Identities=20% Similarity=0.105 Sum_probs=45.4
Q ss_pred HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHh
Q 024079 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF 224 (273)
Q Consensus 152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w--I~~ifGafLL~tg~ 224 (273)
+.-..-+.-+.....++.+. .|+++|.++.-+--.+.-+-.++...++..+.+.+.| .+++.+++.+..++
T Consensus 94 l~g~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 94 LLGIGSGFFSPASNALIADW--FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccc--chhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 33333456666677777776 6777777776555555555667777788888766555 66666666555544
No 38
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=88.00 E-value=17 Score=31.60 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=33.3
Q ss_pred HHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024079 153 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (273)
Q Consensus 153 LE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w 210 (273)
.-..-+.-+....+++... .|+++|.++.-+--.+.-+--++-..++..+++.+.|
T Consensus 102 ~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 102 LAIAQAFFTPAYQAMLPDL--VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344455555566666665 6777666665444344444556666777777775554
No 39
>COG1971 Predicted membrane protein [Function unknown]
Probab=87.60 E-value=10 Score=34.55 Aligned_cols=100 Identities=19% Similarity=0.151 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhHhhhhc----Chhh--------H-HHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHH
Q 024079 122 AFCVSTAVAFGLGVGFIE----GASK--------A-SEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA 188 (273)
Q Consensus 122 ~~wI~LAllFg~~i~~~~----G~~~--------a-~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~ 188 (273)
.=|++-+++..+++|... +.+. . ..|....++-.+.|.||+-|=+-..- ++-.-+.-+...|++
T Consensus 69 ~~wigf~lL~~lG~~mI~e~f~~~~~~~~~~~~~~~~~~~~~~~laiatSidal~vG~~~a~---lgv~i~~~av~iG~~ 145 (190)
T COG1971 69 AHWIGFVLLIILGLKMIIEGFKNEEDEFVDPAEKHDLNFKELILLAIATSIDALAVGVGLAF---LGVNILLAAVAIGLI 145 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhcchhcccccchhhHHHHHHHHHHHHHHHHHHhhhHHH---hcchHHHHHHHHHHH
Confidence 456777777766666532 2111 1 12777888999999999987665443 344445566666644
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHHhhhhhc
Q 024079 189 GAIVFRLSLILLGTATLQRF-----EAVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 189 gAiv~RiIfI~~G~~Li~~f-----~wI~~ifGafLL~tg~K~~~~ 229 (273)
-. ++..+|..+=.++ .+..+++|+.|+..|.|.+.+
T Consensus 146 T~-----il~~~G~~IG~~~g~~~g~~ae~lgGiiLI~~G~~iL~~ 186 (190)
T COG1971 146 TL-----ILSALGAIIGRKLGKFLGKYAEILGGIILIGIGVKILLE 186 (190)
T ss_pred HH-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 32 3344444433322 368899999999999998864
No 40
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=87.35 E-value=1 Score=40.87 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=46.9
Q ss_pred hchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCC
Q 024079 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF---RLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDT 234 (273)
Q Consensus 158 SvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~---RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~ee~~ 234 (273)
.+|.++|....|+. +. +.|+|-..+|=...... =.++...|..++- =+|+.-+.|+.=++.|+|-+.++|||+
T Consensus 5 niDdi~vL~~fF~~--~~-~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~iP-~~wIlGlLGliPI~lGi~~l~~~~~~~ 80 (193)
T TIGR00779 5 GVDLLVILLIFFAR--AK-RKEYKDIYIGQYLGSIILILVSLLLAFGVNLIP-EKWVLGLLGLIPIYLGIKVAIKGECDE 80 (193)
T ss_pred cHHHHHHHHHHHHH--cc-CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhCC-HHHHHhHHhHHHHHHHHHHHhcccccc
Confidence 57999999999985 55 66666555554333321 1122233433332 269988999999999999877655443
Q ss_pred C
Q 024079 235 D 235 (273)
Q Consensus 235 d 235 (273)
|
T Consensus 81 ~ 81 (193)
T TIGR00779 81 D 81 (193)
T ss_pred c
Confidence 3
No 41
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=83.30 E-value=27 Score=33.66 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=25.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhHhhhhcC
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFIEG 140 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~i~~~~G 140 (273)
+.++|.|+++...++...+|++.+.++.+..|
T Consensus 89 ~G~is~~~al~~~~~l~~la~~lg~~L~~~~~ 120 (331)
T PRK12392 89 SGRLSEKEALWNSIIVLLLAIGLGVWLGLHIG 120 (331)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45788999999999888888888776655444
No 42
>TIGR00901 2A0125 AmpG-related permease.
Probab=81.12 E-value=41 Score=30.16 Aligned_cols=58 Identities=7% Similarity=-0.152 Sum_probs=37.8
Q ss_pred HHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024079 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (273)
Q Consensus 150 gylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~ 209 (273)
+.++...-+..+..+.+++.+. .|+++|.++.-+-..+.-+.-++...++..+.+.+.
T Consensus 90 ~~~~~~~~~~~~~~~~a~~~~~--~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 90 AFLIAFFSATQDIALDAWRLEI--LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3355566666777778888786 588888877766555555555555666666666554
No 43
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=79.13 E-value=33 Score=37.73 Aligned_cols=101 Identities=10% Similarity=0.058 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCCC-C-hhhhhH------------------
Q 024079 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKV-P-VMYQNR------------------ 181 (273)
Q Consensus 122 ~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~FkV-P-~~~Q~R------------------ 181 (273)
++-+.++++++.+++.+.|.....---..-++=.+.++||+|+++.- . ..- | .+-++|
T Consensus 97 V~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~-~-~~t~~~~~v~eRIa~~l~~vGpSItltslt 174 (886)
T TIGR00920 97 LFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKF-A-LSSNSQDEVRDNIARGMAILGPTITLDTVV 174 (886)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhh-h-hccCCCCCHHHHHHHHHHHhccceeHHHHH
Confidence 56677888888888888887654432222244557899999999654 2 111 1 112222
Q ss_pred -HHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Q 024079 182 -VLSYGIAGAI----VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (273)
Q Consensus 182 -vL~~GI~gAi----v~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K 225 (273)
+|.+|+ |++ ..|..-.+.+++++-.|-+-+-+|++.|-+.+-.
T Consensus 175 e~l~F~v-Gtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~LsL~~~l 222 (886)
T TIGR00920 175 ETLVIGV-GTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACLSLVLEL 222 (886)
T ss_pred HHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233332 222 1455555666776666777788888888877754
No 44
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=72.21 E-value=1e+02 Score=30.21 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHhhhH--------------HHHHHHHHHHHHHhhhhhcc--------CCCCCCCccH
Q 024079 184 SYGIAGAIVFRLSLILLGTA-TLQRFEA--------------VNLVLAGILLFSSFKLFASE--------EDDTDLSDNF 240 (273)
Q Consensus 184 ~~GI~gAiv~RiIfI~~G~~-Li~~f~w--------------I~~ifGafLL~tg~K~~~~~--------ee~~d~~~n~ 240 (273)
.+..+...++|.++++.... ++..|++ ++.+..+.+.|..++.+... ++..+..++.
T Consensus 202 ~~~~~~g~~lr~~li~~~pi~~ls~~qf~~~~s~~~~~lA~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ly~d~ 281 (438)
T PF06011_consen 202 WWSFLKGNLLRLLLIFFFPITILSFFQFTLADSWASVVLAVILFALWIVLLGYFVFRIIRIARKSKRLHNNPRSKLYDDP 281 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHhheEeeecchhccCCchhhccCCh
Confidence 45778888899999765332 3333333 23344445556666644321 1112223333
Q ss_pred HHHHHHhhccccccccCceeEEE
Q 024079 241 IVKTCQRFIPVTSNVLCTHSLYV 263 (273)
Q Consensus 241 ivk~lrk~lPvt~~y~G~kff~v 263 (273)
+.+.|+=|...+|+.++.+|.
T Consensus 282 --~~l~~~G~LY~~Y~~~~~~f~ 302 (438)
T PF06011_consen 282 --KTLLRWGFLYNQYRPSRWWFF 302 (438)
T ss_pred --hHHHHheeeHhhcCcchhhhH
Confidence 677788899999998876654
No 45
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=71.69 E-value=60 Score=29.50 Aligned_cols=27 Identities=11% Similarity=0.050 Sum_probs=20.6
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhHh
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLGV 135 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~i 135 (273)
++++|.+++...+.+...++++.+..+
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l 102 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLI 102 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999988888887777765543
No 46
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=69.43 E-value=36 Score=35.84 Aligned_cols=78 Identities=21% Similarity=0.308 Sum_probs=47.2
Q ss_pred HHHHHhhchhHHHHHHHhCcCCCChhhhhHH-------------------HHHHHHH--HH-HHHHHHHHHHHHHHHhhh
Q 024079 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRV-------------------LSYGIAG--AI-VFRLSLILLGTATLQRFE 209 (273)
Q Consensus 152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~Rv-------------------L~~GI~g--Ai-v~RiIfI~~G~~Li~~f~ 209 (273)
++=..+++||+|++.-..+.-+....-++|. +-+|+.. .+ .+|...+..|++++=.|-
T Consensus 286 FLvlgIGvDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i 365 (798)
T PF02460_consen 286 FLVLGIGVDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFI 365 (798)
T ss_pred HHHHHHHHhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 4445789999999998877432222222231 1122111 11 255656666666665566
Q ss_pred HHHHHHHHHHHHHHhhhhhc
Q 024079 210 AVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 210 wI~~ifGafLL~tg~K~~~~ 229 (273)
+...+|+++|.+-+-+....
T Consensus 366 ~~it~f~a~l~l~~~re~~~ 385 (798)
T PF02460_consen 366 YQITFFPAILVLDGRREAAG 385 (798)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 77888999999988777543
No 47
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=69.43 E-value=75 Score=29.15 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=23.8
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhHhhhh
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFI 138 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~i~~~ 138 (273)
+.++|.|++..+...+.+++++.|.++.+.
T Consensus 81 ~G~is~~~~~~~~~~~~~~~~~~g~~l~~~ 110 (293)
T PRK06080 81 RGGISPKQVKRAAIAFFGLAALLGLYLVAV 110 (293)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999988888888887766543
No 48
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=69.41 E-value=30 Score=34.89 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHhhc-------hhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 024079 143 KASEFFAGYILEQSLSV-------DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF-RLSLILLGTATLQ 206 (273)
Q Consensus 143 ~a~ef~tgylLE~sLSv-------DNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~-RiIfI~~G~~Li~ 206 (273)
..+.+.++.+.|..... |.++|-++++.. -+|+.----+...|.+.|+++ +-+|=.+|-.++|
T Consensus 125 ~~vs~~~a~~~E~l~~~~r~~~~~dsa~VTglLlal-~LPp~~P~W~~~iG~~fAIvigK~vFGGlG~N~FN 195 (413)
T TIGR01937 125 LLVSYAVGGTWEVLFAVVRKHEINEGFLVTGILFPL-IVPPTIPLWMAALGIAFGVVVAKEVFGGTGRNILN 195 (413)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-HCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCccC
Confidence 35556677777744221 788888888874 788888888888888888875 7777777766665
No 49
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=68.66 E-value=74 Score=29.16 Aligned_cols=26 Identities=12% Similarity=0.011 Sum_probs=21.2
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~ 134 (273)
+.++|.|++..+..+...++++.+.+
T Consensus 76 sG~is~~~a~~~~~~l~~~~~~l~~~ 101 (279)
T PRK09573 76 SGRISLKEAKIFSITLFIVGLILSIF 101 (279)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999888888876554
No 50
>PRK14013 hypothetical protein; Provisional
Probab=66.76 E-value=27 Score=34.48 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHH-HHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHH
Q 024079 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI-AGAIVFRLSLI-LLGTATLQRFEAVNLVLAGILLFSS 223 (273)
Q Consensus 146 ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI-~gAiv~RiIfI-~~G~~Li~~f~wI~~ifGafLL~tg 223 (273)
.|+..=+++.+-|+|++...-.+.+ +.-+...|. +|++.+|.+-+ ++-...+++|.++.+-....+.+.|
T Consensus 224 ~fl~lE~~D~~FS~DsV~aafAiT~--------d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~lg 295 (338)
T PRK14013 224 GFLYLEVLDASFSFDGVIGAFAITN--------DIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGALA 295 (338)
T ss_pred HHHHHHHHHHHHHhccchhheeecC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHHH
Confidence 3555558899999999876555443 345555555 55556999844 3345578899999999999999999
Q ss_pred hhhhhc
Q 024079 224 FKLFAS 229 (273)
Q Consensus 224 ~K~~~~ 229 (273)
+||+.+
T Consensus 296 vkmll~ 301 (338)
T PRK14013 296 VIMLLS 301 (338)
T ss_pred HHHHHh
Confidence 999885
No 51
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=66.50 E-value=1.1e+02 Score=28.50 Aligned_cols=58 Identities=17% Similarity=-0.016 Sum_probs=32.1
Q ss_pred hhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHH
Q 024079 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLA 216 (273)
Q Consensus 157 LSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w--I~~ifG 216 (273)
.+.......+++-+. .|++.|.++.-+-..+--+-..+-..+|..+.+.+.| ++++.+
T Consensus 122 ~g~~~~~~~~~i~~~--~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 181 (394)
T PRK10213 122 LGGFWAMSASLTMRL--VPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAA 181 (394)
T ss_pred hHHHHHHHHHHHHHH--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 333444445555555 5776666655333332335666777788888876555 444433
No 52
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=64.07 E-value=40 Score=33.96 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHh-------hchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 024079 144 ASEFFAGYILEQSL-------SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVF-RLSLILLGTATLQ 206 (273)
Q Consensus 144 a~ef~tgylLE~sL-------SvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~-RiIfI~~G~~Li~ 206 (273)
...++++.+.|... --|.++|-++++.. -+|+.----+...|.+.|+++ +-+|=.+|-.++|
T Consensus 125 ~vs~~~a~~~E~l~~~~r~k~~~dga~VTglLlal-~LPp~~P~W~vviG~~fAIvigK~vFGGlG~N~FN 194 (405)
T PRK05349 125 LVSFIVGGFWEVLFAVVRGHEVNEGFFVTSILFAL-ILPPTIPLWQVALGISFGVVIAKEVFGGTGRNFLN 194 (405)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHH-HCCCCchHHHHHHHHHHHHHHHHHhcCCCCcCccC
Confidence 45566777777432 15677777777774 788888888888888888864 7777777766665
No 53
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=63.80 E-value=54 Score=23.83 Aligned_cols=62 Identities=23% Similarity=0.240 Sum_probs=31.2
Q ss_pred hhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHHHH
Q 024079 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILLFSS 223 (273)
Q Consensus 157 LSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f-----~wI~~ifGafLL~tg 223 (273)
||+|+..|=...--. +++ +++.+...+..++ +-.++.++|..+=+++ ++..+++|+.|+..|
T Consensus 1 lSiDaf~vg~~~g~~-~~~---~~~~~~~~~~ig~-~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iLi~iG 67 (67)
T PF02659_consen 1 LSIDAFAVGISYGLR-GIS---RRIILLIALIIGI-FQFIMPLLGLLLGRRLGRFIGSYAEWIGGIILIFIG 67 (67)
T ss_pred CcHHHHHHHHHHHHH-cCC---hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 688887664332221 333 2223333333332 3445555544443322 357788888888754
No 54
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=62.86 E-value=1.1e+02 Score=29.30 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHH
Q 024079 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVL 167 (273)
Q Consensus 119 ~wS~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfal 167 (273)
..+..|..+++.|.+++..-.|++++-..+++|++-.-=+.-.++++++
T Consensus 9 ~~~~~~~l~~~~f~yG~~HAlgPGHGKavi~sYlv~~~~~~~~a~~lgl 57 (279)
T PRK10019 9 QQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIAIKGTIKQAVMLGL 57 (279)
T ss_pred HcchHHHHHHHHHHHHHHHhcCCCcchHHHhhhhhcCcccHHHHHHHHH
Confidence 3347788888888888888888888888888887643333333334333
No 55
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=59.63 E-value=54 Score=28.38 Aligned_cols=24 Identities=13% Similarity=0.098 Sum_probs=19.3
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHh
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFG 132 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg 132 (273)
+++++.+++...+.....++++++
T Consensus 64 ~g~i~~~~~~~~~~~~~~l~l~l~ 87 (257)
T PF01040_consen 64 SGRISPRQALIFALILLLLGLLLA 87 (257)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 467788898888888888888776
No 56
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=59.58 E-value=1.2e+02 Score=28.71 Aligned_cols=77 Identities=14% Similarity=0.064 Sum_probs=39.8
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA 188 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~ 188 (273)
+.++|.|++..+.++...+|++.+.. .|... +. +++=.+ +++. . +..||..=+|.-.++.+
T Consensus 92 sG~ls~~~a~~~~~~~~~lal~la~~----~~~~~---~~--------~~~~~~-~lg~--~-Ys~pP~rlKr~~~~~~~ 152 (308)
T PRK12887 92 AGEFSRRQGQRIVIITGILALILAAL----LGPWL---LI--------TVGISL-LIGT--A-YSLPPIRLKRFPLLAAL 152 (308)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHH----HhHHH---HH--------HHHHHH-HHHH--H-HcCCchhhcccchhHHH
Confidence 35788899987777666666655432 22111 11 111011 1111 1 23677655666666655
Q ss_pred HHHHHHHHHHHHHHHH
Q 024079 189 GAIVFRLSLILLGTAT 204 (273)
Q Consensus 189 gAiv~RiIfI~~G~~L 204 (273)
....+|++.+..|+.+
T Consensus 153 ~i~~~~g~i~~~g~~~ 168 (308)
T PRK12887 153 CIFTVRGVIVNLGLFL 168 (308)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555777776666543
No 57
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=58.94 E-value=1.4e+02 Score=27.29 Aligned_cols=27 Identities=11% Similarity=-0.040 Sum_probs=20.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhHh
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLGV 135 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~i 135 (273)
+..+|.|++.....+...++++.+.++
T Consensus 77 ~G~is~~~a~~~~~~~~~~~~~l~~~l 103 (283)
T TIGR01476 77 SGIISLREVRWNWLVLTVAGLLVALVL 103 (283)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999888888777777665543
No 58
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=58.76 E-value=48 Score=25.87 Aligned_cols=52 Identities=15% Similarity=0.090 Sum_probs=37.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHhhhhhc
Q 024079 176 VMYQNRVLSYGIAGAIVFRLSLILLGTATL--QRFEAVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 176 ~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li--~~f~wI~~ifGafLL~tg~K~~~~ 229 (273)
+++++|...|.+. ..+|+.++++++.+. --..|++.++++.|=|.++=+.-+
T Consensus 11 ~d~~~R~r~Y~i~--M~~Ri~~fvlA~~~~~~~~la~~~~~~av~LPwvAVviAN~ 64 (73)
T PF11298_consen 11 QDQRRRRRRYLIM--MGIRIPCFVLAAVVYRLGWLAWAIIVGAVPLPWVAVVIANA 64 (73)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhheeeccC
Confidence 4456666677665 457998888877777 344568888899999999876543
No 59
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=57.97 E-value=1.5e+02 Score=27.03 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=25.5
Q ss_pred hHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHH
Q 024079 161 NLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLA 216 (273)
Q Consensus 161 NlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w--I~~ifG 216 (273)
.....+++... .|+++|.++.-+--.+..+.-++...+|..+.+.+.| ..++.+
T Consensus 109 ~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~ 164 (392)
T PRK10473 109 YVVAFAILRDT--LDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMA 164 (392)
T ss_pred HHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHH
Confidence 33344455554 4676666654332222223334445556555554443 444444
No 60
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=57.66 E-value=1.6e+02 Score=29.70 Aligned_cols=96 Identities=18% Similarity=0.146 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHH
Q 024079 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLI 198 (273)
Q Consensus 119 ~wS~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI 198 (273)
..+++=..++++.+..+|+..|...+....+. +.|+..+|+...=|...-+.++...++++ ++=++..
T Consensus 340 ~~~alra~la~~~~~l~Wi~t~W~~G~~~~~~-----------~~v~~~lfa~~~~P~~~~~~~~~G~l~~~-~~a~~~~ 407 (650)
T PF04632_consen 340 LRNALRAFLAILIAGLFWIATGWPSGATAVMM-----------AAVVSSLFATLDNPAPALRLFLIGALLGA-VLAFLYL 407 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHH-----------HHHHHHHHcCCcChHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34455566777777777777666554443322 34667778876667765555554444443 3333333
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024079 199 LLGTATLQRFEAVNLVLAGILLFSSFKL 226 (273)
Q Consensus 199 ~~G~~Li~~f~wI~~ifGafLL~tg~K~ 226 (273)
++-.--++.|+.+.++.+.+++..++.+
T Consensus 408 ~~vlP~~~~f~~L~l~l~~~l~~~~~~~ 435 (650)
T PF04632_consen 408 FFVLPHLDGFPLLALVLAPFLFLGGLLM 435 (650)
T ss_pred HHhhhccCcHHHHHHHHHHHHHHHHHHH
Confidence 3333333345555555566665555544
No 61
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=57.21 E-value=2.6e+02 Score=29.62 Aligned_cols=50 Identities=16% Similarity=-0.059 Sum_probs=29.2
Q ss_pred HhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024079 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207 (273)
Q Consensus 156 sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~ 207 (273)
..++.+....+++... .|++.|.++.-+--.+..+.-++-.++|..+++.
T Consensus 116 ~~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 116 QSAIYSPAKYGIIPEL--VGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHhhchHHHhhhHHh--cCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555666665 5777676665544444445555666667777664
No 62
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=56.07 E-value=2e+02 Score=31.58 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=28.1
Q ss_pred HhhchhH---HHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024079 156 SLSVDNL---FVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTAT 204 (273)
Q Consensus 156 sLSvDNl---fVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~L 204 (273)
.+.+|.+ ||.++++++...-....+...+|-.+.-++-=++|+++|+.+
T Consensus 261 lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L 312 (810)
T TIGR00844 261 MLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSIL 312 (810)
T ss_pred HhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5666664 455667775433122223445676665555556788888775
No 63
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=55.81 E-value=1.3e+02 Score=28.06 Aligned_cols=24 Identities=13% Similarity=-0.112 Sum_probs=20.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHh
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFG 132 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg 132 (273)
+.++|.|||..+++++..++++.+
T Consensus 85 sG~is~~~a~~~~~~l~~~g~~l~ 108 (296)
T PRK04375 85 TGRISPREALIFGLVLGVLGFLLL 108 (296)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 568899999999988888887764
No 64
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=55.63 E-value=1.8e+02 Score=27.20 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=25.5
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhHhhhhcC
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFIEG 140 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~i~~~~G 140 (273)
+.++|.+++.....+..++++++|+++.+..|
T Consensus 84 ~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~ 115 (296)
T PRK05951 84 AGIMTLGHLRVLGIALGAIALQLGWSLVLDRG 115 (296)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45788999999999988999888887665444
No 65
>PRK10621 hypothetical protein; Provisional
Probab=53.60 E-value=1.8e+02 Score=26.49 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhhhc
Q 024079 193 FRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 193 ~RiIfI~~G~~Li~~f~--wI~~ifGafLL~tg~K~~~~ 229 (273)
.-++...+|+.+....+ ++..++|++++..++.++..
T Consensus 86 ~~l~Ga~~G~~l~~~l~~~~l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 86 MTFVGSMSGALLVQYVQADILRQILPILVIGIGLYFLLM 124 (266)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 44566777888877554 57888999999999988754
No 66
>COG0306 PitA Phosphate/sulphate permeases [Inorganic ion transport and metabolism]
Probab=52.91 E-value=2.2e+02 Score=27.80 Aligned_cols=84 Identities=19% Similarity=0.142 Sum_probs=45.3
Q ss_pred ccchhhhhhhhHHHHHHHHH-HHHhhHhhhhcChhhHH-HHHH-HHHHHHHhhc-hhHHHHHHHhCcCCCChhhhhHHHH
Q 024079 109 EGRESYTSSVKTVAFCVSTA-VAFGLGVGFIEGASKAS-EFFA-GYILEQSLSV-DNLFVFVLIFKYFKVPVMYQNRVLS 184 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LA-llFg~~i~~~~G~~~a~-ef~t-gylLE~sLSv-DNlfVfalIf~~FkVP~~~Q~RvL~ 184 (273)
+.-+++|+|..+.++...++ +++|.-+-.+.+++--. +.++ ...+|.++++ ==+.+...+..++++|-.--| .+.
T Consensus 34 s~alt~~~Av~laavf~f~Ga~l~g~~V~~TI~~~iv~~~~~~~~~~~~~~~aaLlaa~~w~~ia~~~GiP~Stsh-aii 112 (326)
T COG0306 34 SGALTPRQAVLLAAVFNFLGALLGGGNVAETIGSGIVDPGLLNDSLTPAGVLAALLAAILWNLIATYLGIPVSTSH-ALI 112 (326)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHcCccHHHHHhcCCCCchhccchhhHHHHHHHHHHHHHHHHHHHHcCCchhHHH-HHH
Confidence 34567899999999999998 55554555554322111 0000 1112222211 113345556677789988554 455
Q ss_pred HHHHHHHHH
Q 024079 185 YGIAGAIVF 193 (273)
Q Consensus 185 ~GI~gAiv~ 193 (273)
=||+|+=+.
T Consensus 113 GaiiG~gla 121 (326)
T COG0306 113 GAIIGAGLA 121 (326)
T ss_pred HHHHHHHHH
Confidence 566665443
No 67
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=52.72 E-value=69 Score=31.13 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=40.5
Q ss_pred chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHhhhhhc
Q 024079 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~f~--wI~~ifGafLL~tg~K~~~~ 229 (273)
.|--|.++.+++. +|-++..+.|-.+|+. |-++-..+|-+.-+-++ |..|+.++..+.-|+||+++
T Consensus 82 GDKTFfiAAlmAm-----r~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~e 150 (294)
T KOG2881|consen 82 GDKTFFIAALMAM-----RYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKE 150 (294)
T ss_pred cchHHHHHHHHHh-----hccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777763 2445667888899985 66666666654433222 44555555555556666654
No 68
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=52.63 E-value=2.1e+02 Score=32.48 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=42.0
Q ss_pred HHHHHhhchhHHHHHHHhCcCC--CChhhhhHHHH------------------HHHHHHH----HHHHHHHHHHHHHHHh
Q 024079 152 ILEQSLSVDNLFVFVLIFKYFK--VPVMYQNRVLS------------------YGIAGAI----VFRLSLILLGTATLQR 207 (273)
Q Consensus 152 lLE~sLSvDNlfVfalIf~~Fk--VP~~~Q~RvL~------------------~GI~gAi----v~RiIfI~~G~~Li~~ 207 (273)
++=..+++||.|++...++.-. .|.+.| .... +|+ ||+ ..|..-+..+++++=.
T Consensus 465 FLvLgIGVDn~Fllv~~~~~t~~~~~v~~r-~~~~l~~~g~SI~~tslt~~~aF~~-ga~t~~Pavr~F~~~~a~av~~~ 542 (1145)
T TIGR00918 465 FLALGVGVDDVFLLAHAFSETGQNIPFEER-TGECLKRTGASVVLTSISNVTAFFM-AALIPIPALRAFSLQAAIVVVFN 542 (1145)
T ss_pred HHHhhhhhcchhHHHHHHhhcCccCCHHHH-HHHHHHHhcceeeHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHH
Confidence 3345789999999998776421 121222 1111 111 111 2455555556666655
Q ss_pred hhHHHHHHHHHHHHHHhhh
Q 024079 208 FEAVNLVLAGILLFSSFKL 226 (273)
Q Consensus 208 f~wI~~ifGafLL~tg~K~ 226 (273)
|-..+.+|.++|.+-+-+.
T Consensus 543 ~l~qit~F~AlLaLD~rR~ 561 (1145)
T TIGR00918 543 FAAVLLVFPAILSLDLRRR 561 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6667778888888877664
No 69
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=52.31 E-value=1.4e+02 Score=27.35 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=17.4
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHh
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFG 132 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg 132 (273)
+.+++.+++..+..+..+++++.+
T Consensus 76 sG~is~~~a~~~~~~l~~~g~~l~ 99 (277)
T PRK12883 76 RGAMSRKAALYYSLLLFAVGLALA 99 (277)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHH
Confidence 457888999998877766665543
No 70
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=51.08 E-value=1.8e+02 Score=26.02 Aligned_cols=70 Identities=10% Similarity=0.063 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhchhHHH-HHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHHHH
Q 024079 147 FFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-------EAVNLVLAGI 218 (273)
Q Consensus 147 f~tgylLE~sLSvDNlfV-falIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f-------~wI~~ifGaf 218 (273)
+....++=.++|+||+.| +..-+. +++.-. -++..|+ +=+++..+|..+=.++ .|. +++|+.
T Consensus 128 ~~e~l~L~iAlSiDalavG~s~~~~--g~~~~~--~~~~igi-----vs~i~~~~G~~lG~~~~~~~~~g~~a-~igGli 197 (206)
T TIGR02840 128 GKEALLLGIALSLDAFGAGIGASLL--GLNPLA--TSILVAV-----MSFIFVSLGLFLGKKISKKSIIGKFS-FLSGIL 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CccHHH--HHHHHHH-----HHHHHHHHHHHHHHHHhhhhhccchH-HHHHHH
Confidence 445667889999999988 555444 344321 2333333 3345566665553321 345 899999
Q ss_pred HHHHHhhh
Q 024079 219 LLFSSFKL 226 (273)
Q Consensus 219 LL~tg~K~ 226 (273)
|+..|+|.
T Consensus 198 LI~iG~~~ 205 (206)
T TIGR02840 198 LILLGVWR 205 (206)
T ss_pred HHHHHHhh
Confidence 99999875
No 71
>PF06541 DUF1113: Protein of unknown function (DUF1113); InterPro: IPR010540 This family consists of several bacterial proteins of unknown function.
Probab=49.50 E-value=1.1e+02 Score=26.36 Aligned_cols=53 Identities=26% Similarity=0.439 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhh-----HHHHHHHHHHHHHHHHHHHHHHH
Q 024079 144 ASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQN-----RVLSYGIAGAIVFRLSLILLGTA 203 (273)
Q Consensus 144 a~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~-----RvL~~GI~gAiv~RiIfI~~G~~ 203 (273)
+.||+||+++|+.+... .=.+=+.|-..|. -.+.||+++-+..|.+-+.+-..
T Consensus 71 ~lEyi~g~~le~~~~~~-------~WDYS~~~~n~~G~Icl~~s~~wg~l~~~~~~~i~P~~~~~ 128 (157)
T PF06541_consen 71 ALEYITGWILEKLFGAR-------WWDYSDLPFNIQGRICLPFSLFWGLLGLLFVKVIHPLLFKL 128 (157)
T ss_pred HHHHHHHHHHHHHHCCc-------cCcCCCCcCCcCCEehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999986542 1122233433433 36899999999999999887543
No 72
>PRK10649 hypothetical protein; Provisional
Probab=49.40 E-value=2e+02 Score=29.74 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=26.9
Q ss_pred hhhcChhhHHHHHHHH----HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHH
Q 024079 136 GFIEGASKASEFFAGY----ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA 190 (273)
Q Consensus 136 ~~~~G~~~a~ef~tgy----lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gA 190 (273)
|++.|-....-+++|+ -+..+|...=+..+.+.+ +|++.|....++|++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~p~~~~~~~~~~~~vl~ 79 (577)
T PRK10649 25 WFFSTLLQAIIYISGYSGTNGFRDALLFSSLWLIPVFL----FPRRIRIIAAVIGVVLW 79 (577)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHH
Confidence 5555655555566664 333344333333333322 57777777777776633
No 73
>PRK03545 putative arabinose transporter; Provisional
Probab=47.43 E-value=2.3e+02 Score=25.99 Aligned_cols=51 Identities=20% Similarity=0.144 Sum_probs=26.5
Q ss_pred HHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHH
Q 024079 166 VLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGI 218 (273)
Q Consensus 166 alIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w--I~~ifGaf 218 (273)
.++.+. .|++.|.|+.-+=-.+.-+.-.+...++..+.+.+.| .+.+.+++
T Consensus 120 ~~i~~~--~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~ 172 (390)
T PRK03545 120 SLAIRV--APAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGG 172 (390)
T ss_pred HHHHHh--CChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHH
Confidence 344443 5776666654432223334555666667667775554 55554443
No 74
>PRK10489 enterobactin exporter EntS; Provisional
Probab=46.07 E-value=2.5e+02 Score=26.02 Aligned_cols=34 Identities=15% Similarity=-0.086 Sum_probs=18.4
Q ss_pred CChhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh
Q 024079 174 VPVMYQNRVLSYGIAGAI--VFRLSLILLGTATLQRFE 209 (273)
Q Consensus 174 VP~~~Q~RvL~~GI~gAi--v~RiIfI~~G~~Li~~f~ 209 (273)
+|+++|-++ .|+..+. +...+-..++..+.+.+.
T Consensus 341 ~p~~~~g~~--~g~~~~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 341 TPDEMLGRI--NGLWTAQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred CCHHHHHHH--HHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence 577665554 4554433 234555555666666543
No 75
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=45.72 E-value=2.2e+02 Score=25.44 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=32.8
Q ss_pred hhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHH
Q 024079 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAGIL 219 (273)
Q Consensus 157 LSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~--wI~~ifGafL 219 (273)
-+..+....+.+... .|++.|.++.-+.-.+..+.-++...++..+.+.+. |..++.+++.
T Consensus 93 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (377)
T PRK11102 93 AAAASVVINALMRDM--FPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAA 155 (377)
T ss_pred HHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 344555555666664 577777777644433333444455555666666443 4554444443
No 76
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=45.66 E-value=1.8e+02 Score=24.21 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 024079 178 YQNRVLSYGIAGAIVFRLSLILL 200 (273)
Q Consensus 178 ~Q~RvL~~GI~gAiv~RiIfI~~ 200 (273)
.++|.+.+++++++++-++++.+
T Consensus 123 ~~N~~l~~~~~~~~~l~~~i~~~ 145 (182)
T PF00689_consen 123 FSNKWLLIAILISIALQILIVYV 145 (182)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHHhcc
Confidence 37899999999999888887766
No 77
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=45.14 E-value=1.5e+02 Score=25.41 Aligned_cols=58 Identities=10% Similarity=-0.034 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCCCCCccHHHHHHHhhccccccccCceeEEEeeccee
Q 024079 211 VNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTSNVLCTHSLYVSLSEFL 269 (273)
Q Consensus 211 I~~ifGafLL~tg~K~~~~~ee~~d~~~n~ivk~lrk~lPvt~~y~G~kff~v~~~g~l 269 (273)
.+.+..+.+++...+.++..+.+.+..+-...+..-|...+.++..+++ .-|+.+|..
T Consensus 53 ~f~~lsv~~~~l~rr~~~~~~~~~~~l~~~~~~l~G~~g~v~e~i~~g~-g~Vkv~g~~ 110 (140)
T COG1585 53 LFAILSVLLALLGRRFVRRRLKPSDGLNQRGEQLVGRRGVVVEDIVEGR-GRVKVEGES 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCcccccchhhHhcCcEEEEEeeccCCe-EEEEECCeE
Confidence 4555677778888888765333333233444567778888888888666 477777754
No 78
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=44.50 E-value=2.3e+02 Score=28.41 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=13.2
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 024079 114 YTSSVKTVAFCVSTAVAF 131 (273)
Q Consensus 114 ~keA~~wS~~wI~LAllF 131 (273)
.++.++...+.-++|+++
T Consensus 252 w~~Y~~q~vflas~alal 269 (432)
T PF06963_consen 252 WRTYFRQPVFLASFALAL 269 (432)
T ss_pred HHHHHhCHHHHHHHHHHH
Confidence 567777888887777754
No 79
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=44.29 E-value=2.8e+02 Score=26.09 Aligned_cols=31 Identities=13% Similarity=0.128 Sum_probs=24.5
Q ss_pred cchhhhhhhhHHHHHHHHHHHHhhHhhhhcC
Q 024079 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEG 140 (273)
Q Consensus 110 ~~is~keA~~wS~~wI~LAllFg~~i~~~~G 140 (273)
..++.|+....+.+..++|++.|+++-+..|
T Consensus 72 g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~~ 102 (284)
T TIGR00751 72 GLITPREVKTALITSVALGALSGLVLALLAA 102 (284)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678889988888888888888887765544
No 80
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=44.22 E-value=2.9e+02 Score=26.22 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=18.1
Q ss_pred ccchhhhhhhhHHHHHHHHHHH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVA 130 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAll 130 (273)
+.++|.+||..++++...++++
T Consensus 78 sG~is~~~A~~~~~~~~~~~~~ 99 (286)
T PRK12895 78 SGRIKMREAIAFTIIFIAIFEI 99 (286)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 5688999999999887777654
No 81
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=43.97 E-value=2.8e+02 Score=26.12 Aligned_cols=62 Identities=11% Similarity=0.117 Sum_probs=32.0
Q ss_pred HHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hH--HHHHHHHH
Q 024079 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-EA--VNLVLAGI 218 (273)
Q Consensus 155 ~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f-~w--I~~ifGaf 218 (273)
..-+.-...+...+-+. .|+++|-++.-+-..+..+.=++...++..+.+.+ .| .+++.|+.
T Consensus 143 ~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~ 207 (465)
T TIGR00894 143 LAQGSVSPATHKIIVKW--APPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIV 207 (465)
T ss_pred HhcccchhhHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHH
Confidence 33344444445555554 57766666554443433444445555666666653 44 55554443
No 82
>PRK01024 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=43.55 E-value=1.5e+02 Score=30.91 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhhc-------hhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 024079 144 ASEFFAGYILEQSLSV-------DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQ 206 (273)
Q Consensus 144 a~ef~tgylLE~sLSv-------DNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~ 206 (273)
.+.+.++.+.|..... |.++|=++++.. -+|+..=-.....|+..|++ -+-+|=..|..++|
T Consensus 126 ~vs~~~~~~~E~lf~~ir~~~i~dsalVTglLlaL-~LPp~~P~W~~avG~~faIvigKevFGGlG~NifN 195 (503)
T PRK01024 126 FISYAVGGTCEVLFAIIRKHKIAEGLLVTGILYPL-ILPPTIPYWMAALGIAFGVVVGKELFGGTGMNILN 195 (503)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hCCCCCcHHHHHHHHHHHHHHHHHhcCcCCCCccC
Confidence 4456666777744321 777777777764 67877666677777777764 55555555555554
No 83
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=41.84 E-value=5.8e+02 Score=29.12 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=14.4
Q ss_pred HHHHHhhchhHHHHHHHhC
Q 024079 152 ILEQSLSVDNLFVFVLIFK 170 (273)
Q Consensus 152 lLE~sLSvDNlfVfalIf~ 170 (273)
++=..+++||+|+++..+.
T Consensus 643 FLvL~IGVD~ifilv~~~~ 661 (1204)
T TIGR00917 643 FLVLAVGVDNIFILVQTYQ 661 (1204)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3445789999999987664
No 84
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=41.74 E-value=3.2e+02 Score=26.02 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=13.8
Q ss_pred ccchhhhhhhhHHHHHHHHH
Q 024079 109 EGRESYTSSVKTVAFCVSTA 128 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LA 128 (273)
+.++|.+||+.++++...++
T Consensus 90 sG~is~~~A~~~~~~~~~~~ 109 (300)
T PRK13106 90 TGAIKISEAKALITAGLILF 109 (300)
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 56889999988865444433
No 85
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=41.33 E-value=3.8e+02 Score=26.89 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=40.6
Q ss_pred HhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHh---hhHHHHHHHHHHHHH--Hhhhhhc
Q 024079 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLIL-LGTATLQR---FEAVNLVLAGILLFS--SFKLFAS 229 (273)
Q Consensus 156 sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~-~G~~Li~~---f~wI~~ifGafLL~t--g~K~~~~ 229 (273)
..+++--.+-.+..++ .|+++|.+.+-.=..|.. +-.++.. ++..|.+. +++++|++|++-+.. .+-.+..
T Consensus 141 ~~g~~~pa~~~i~~~W--~P~~Ers~~~ail~~g~q-~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKW--APPNERSTFIAILTAGSQ-LGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHhHHHhhhhceeeeE--CCHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666677776 688777665444333332 2223332 45556665 566999988764433 3444443
Q ss_pred c
Q 024079 230 E 230 (273)
Q Consensus 230 ~ 230 (273)
|
T Consensus 218 d 218 (466)
T KOG2532|consen 218 D 218 (466)
T ss_pred C
Confidence 3
No 86
>PRK10263 DNA translocase FtsK; Provisional
Probab=40.85 E-value=2.3e+02 Score=32.96 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 024079 186 GIAGAIVFRLSLILLGTATLQRFEAV 211 (273)
Q Consensus 186 GI~gAiv~RiIfI~~G~~Li~~f~wI 211 (273)
|.+|++++=++++++|..++..++|+
T Consensus 159 G~vGa~LILLlllLIGLiLlTglSwl 184 (1355)
T PRK10263 159 HSSGGTIALLCVWAAGLTLFTGWSWV 184 (1355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44455554455555566666556654
No 87
>PRK07946 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=40.47 E-value=2.7e+02 Score=24.91 Aligned_cols=106 Identities=17% Similarity=0.227 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHH-----HHHHHHHHHHHHHH
Q 024079 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRV-----LSYGIAGAIVFRLS 196 (273)
Q Consensus 122 ~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~Rv-----L~~GI~gAiv~RiI 196 (273)
..+++.+++|++++|......---..++..+++.+ =|++++++--.. +.||-..... ..==+.=|+++=.|
T Consensus 6 ~~~i~~gvL~~~G~Ylll~rnLir~iiGl~il~~~---vnLlii~~G~~~-g~~PI~~~~~~~~~~~aDPLPQALVLTAI 81 (163)
T PRK07946 6 GLLVAIGVLTSAGVYLLLERSLTRMLLGLLLIGNG---VNLLILTAGGPA-GNPPILGRTSEYGETMADPLAQAMILTAI 81 (163)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH---HHHHHHHHhccC-CCCCeecCCcccccccCCcchHHHHHHHH
Confidence 56788899999999977633223333433455554 388777775322 3333321100 01112335555444
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCCCCCCccHH
Q 024079 197 LILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFI 241 (273)
Q Consensus 197 fI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~ee~~d~~~n~i 241 (273)
-|.+++ . .|++.|.+-.++....++-++|.++-.+
T Consensus 82 VIg~a~--t--------A~~LaL~~r~y~~~gt~~v~~d~ed~~~ 116 (163)
T PRK07946 82 VITMGI--T--------AFVLALAYRSYRLTTADEVEDDPEDTRV 116 (163)
T ss_pred HHHHHH--H--------HHHHHHHHHHHHHhCCCccccCHHHHHH
Confidence 443333 2 2566666766666544444455555554
No 88
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=40.07 E-value=1.7e+02 Score=23.37 Aligned_cols=41 Identities=15% Similarity=0.222 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCCC
Q 024079 193 FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233 (273)
Q Consensus 193 ~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~ee~ 233 (273)
.=++++++|+..+.-.+-+.|+|+.-.++.-.-|+.+.+++
T Consensus 42 ~a~l~~lL~a~fvA~~qi~VYaGai~vLflF~iml~~~~~~ 82 (88)
T PRK06433 42 VAVLYVMLNAEFLAAVQVLVYVGAVLILITFAVMLTKGEEG 82 (88)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 34566777777777677788998887777765555444333
No 89
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=39.32 E-value=3e+02 Score=25.11 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=20.9
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~ 134 (273)
+.++|.||+..++++...++++.+..
T Consensus 77 ~G~is~~~a~~~~~~l~~~g~~~~~~ 102 (276)
T PRK12882 77 SGAVSPRGALAFSILLFAAGVALAFL 102 (276)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999998888888776544
No 90
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=38.92 E-value=2.5e+02 Score=26.40 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=15.8
Q ss_pred ccchhhhhhhhHHHHHHHHHHH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVA 130 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAll 130 (273)
+.++|.|||+..++++..++++
T Consensus 88 sG~is~~~a~~~~~~~~~~~~~ 109 (291)
T PRK12874 88 DGRISVKSMVLFIVLNALIFIG 109 (291)
T ss_pred CCCcCHHHHHHHHHHHHHHHHH
Confidence 4588899998877777655443
No 91
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=38.74 E-value=1.8e+02 Score=30.22 Aligned_cols=58 Identities=21% Similarity=0.173 Sum_probs=37.0
Q ss_pred HHHHHHHhhchhHHHH---HHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024079 150 GYILEQSLSVDNLFVF---VLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (273)
Q Consensus 150 gylLE~sLSvDNlfVf---alIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w 210 (273)
-.+++..+++-.+.-+ ..|... +|+++|.|+--+--.+..+-.++-..++..+. .+.|
T Consensus 118 L~i~R~llGvaEA~~~A~~syI~~W--fP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gW 178 (511)
T TIGR00806 118 MQLMEVFYSVTMAARIAYSSYIFSL--VPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGW 178 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCc
Confidence 3344555544444333 344454 89999999887777777777777777777744 4666
No 92
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=38.71 E-value=2.8e+02 Score=24.57 Aligned_cols=45 Identities=13% Similarity=-0.091 Sum_probs=23.7
Q ss_pred ChhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh--HHHHHHHHHH
Q 024079 175 PVMYQNRVLSYGIAGAI--VFRLSLILLGTATLQRFE--AVNLVLAGIL 219 (273)
Q Consensus 175 P~~~Q~RvL~~GI~gAi--v~RiIfI~~G~~Li~~f~--wI~~ifGafL 219 (273)
|++.|.++...|+..+. +.-++-..++..+.+.+. +.+++.++..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~ 165 (375)
T TIGR00899 117 DRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165 (375)
T ss_pred hhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 55555555445543221 334555666777776544 4566655543
No 93
>CHL00016 ndhG NADH dehydrogenase subunit 6
Probab=38.08 E-value=1.5e+02 Score=26.18 Aligned_cols=40 Identities=20% Similarity=0.122 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccCC
Q 024079 193 FRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEED 232 (273)
Q Consensus 193 ~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~ee 232 (273)
.=++++++|+..+.-.+-+.|+||+..++.-.-|+.+.++
T Consensus 46 vA~ly~lL~a~Fla~~qIiVYvGAI~VLflFvIMll~~~~ 85 (182)
T CHL00016 46 ISLFYILLNADFVAAAQLLIYVGAINVLIIFAVMFMNGPE 85 (182)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHcCchh
Confidence 3356777788888878889999999999998888876543
No 94
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=38.06 E-value=3.6e+02 Score=25.86 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=44.0
Q ss_pred chhhhhhhhHHHHHHHHHHHH-hhHhhhhcChh-hHHHHHH----H-HHHHHHhhchhHHHHHHHhCcCCCChhhhhHHH
Q 024079 111 RESYTSSVKTVAFCVSTAVAF-GLGVGFIEGAS-KASEFFA----G-YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL 183 (273)
Q Consensus 111 ~is~keA~~wS~~wI~LAllF-g~~i~~~~G~~-~a~ef~t----g-ylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL 183 (273)
-.++|+|+.++.++..++.++ |..+--+.++. .-.+.++ . +..-..-..=-+.+...+..++++|-.-= .++
T Consensus 18 al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~~~~~~~~~~~~~~~al~~a~iw~~i~t~~glPvStT-hal 96 (326)
T PF01384_consen 18 ALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYFTVDDPQILMIGMLAALLAAAIWLLIATWLGLPVSTT-HAL 96 (326)
T ss_pred ccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhCCCchHH-HHH
Confidence 456899999998888887666 34333322210 0111111 0 00111111223456667778889998854 456
Q ss_pred HHHHHHHHH
Q 024079 184 SYGIAGAIV 192 (273)
Q Consensus 184 ~~GI~gAiv 192 (273)
.-|++|+-+
T Consensus 97 vGal~G~~l 105 (326)
T PF01384_consen 97 VGALIGAGL 105 (326)
T ss_pred HHHHHHHHH
Confidence 667777654
No 95
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=36.77 E-value=3.7e+02 Score=25.39 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=19.9
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~ 134 (273)
+.+++.+++.....+...++++.+.+
T Consensus 104 sG~is~~~a~~~~~~l~~~~~~l~~~ 129 (314)
T PRK07566 104 SGAISLRWVLYLIAVLTVLGLAVAYL 129 (314)
T ss_pred CceeCHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999988888887765544
No 96
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=36.58 E-value=3.6e+02 Score=25.14 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=24.9
Q ss_pred HHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024079 162 LFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (273)
Q Consensus 162 lfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w 210 (273)
.....++... .|+++|.++.-+--.+..+.-.+-..+|..+.+.+.|
T Consensus 109 ~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 155 (485)
T TIGR00711 109 PLSFSTLLNI--YPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW 155 (485)
T ss_pred HHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence 3344555554 5777666654433333333444555666677765443
No 97
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=36.52 E-value=3.5e+02 Score=25.02 Aligned_cols=66 Identities=12% Similarity=-0.016 Sum_probs=34.9
Q ss_pred HHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hH--HHHHHHHHHHHH
Q 024079 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-EA--VNLVLAGILLFS 222 (273)
Q Consensus 155 ~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f-~w--I~~ifGafLL~t 222 (273)
..-+.-+..+-+++.+. +|+++|.++.-+-..|.-+.-++...++..+++.+ .| .+++.+++.+-.
T Consensus 106 ~~~~~~~~~~~al~~~~--~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~ 174 (402)
T PRK11902 106 FLSASQDIVFDAYSTDV--LHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAG 174 (402)
T ss_pred HHHHHHHHHHHHHHHHh--cChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 33445556667777776 68877776554433332333333344455566642 34 555555544433
No 98
>PRK10457 hypothetical protein; Provisional
Probab=36.18 E-value=68 Score=25.31 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHhhhhh
Q 024079 182 VLSYGIAGAIVFRLSLILLGTATLQRF---EAVNLVLAGILLFSSFKLFA 228 (273)
Q Consensus 182 vL~~GI~gAiv~RiIfI~~G~~Li~~f---~wI~~ifGafLL~tg~K~~~ 228 (273)
-+..|++||++--.++-.+|..-..-+ .++..+.|+.++...++.++
T Consensus 32 tiilGiiGA~iGg~l~~~~g~~~~~g~~~~~~i~aviGAiill~i~~~~~ 81 (82)
T PRK10457 32 TIILGIVGAVVGGWISTFFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKIK 81 (82)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 367788888877766555554322223 45666666666655566543
No 99
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=35.07 E-value=1.2e+02 Score=27.12 Aligned_cols=56 Identities=9% Similarity=0.136 Sum_probs=38.8
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhH--HHHHHHHHHHHHHhhhhhcc
Q 024079 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR--------FEA--VNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~--------f~w--I~~ifGafLL~tg~K~~~~~ 230 (273)
|..||++.-..-+..+..+=++-+.+|..++.- |+| +-.+.|+.+.-...+.++++
T Consensus 8 k~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~NllGVil~~~~~~~~l~~~k~~ 73 (165)
T PF11286_consen 8 KERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWNLLGVILGLLLTSALLRQLKTH 73 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeeHHHHHHHHHHHHHHHHHHccC
Confidence 456888877777777777777777888888884 455 55556766666666656543
No 100
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=33.17 E-value=3.7e+02 Score=24.36 Aligned_cols=35 Identities=3% Similarity=-0.178 Sum_probs=25.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhHhhhhcChhhHHH
Q 024079 112 ESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASE 146 (273)
Q Consensus 112 is~keA~~wS~~wI~LAllFg~~i~~~~G~~~a~e 146 (273)
+++|+.+.|.++++.+..++...+|++.......+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (356)
T PRK10755 2 ISLRRRLLLTIGLILLVFQLISVFWLWHESTEQIQ 36 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 57899999999988877666666766655544444
No 101
>PRK12505 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=32.84 E-value=1.6e+02 Score=26.00 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=42.5
Q ss_pred HHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcC----CCChhhhhHHHHHHHHHHHHHHHHHHHH
Q 024079 125 VSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYF----KVPVMYQNRVLSYGIAGAIVFRLSLILL 200 (273)
Q Consensus 125 I~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~F----kVP~~~Q~RvL~~GI~gAiv~RiIfI~~ 200 (273)
+-+-++|++++.+.-..+.+--|.+|.++=.++ +...+.+..- .+|++..+...-.|++.++..=++-.+.
T Consensus 27 ~P~illfs~ylll~Gh~~PGGGFqgGlI~Aaa~-----iL~~la~G~~~~~~~l~~~~~~~l~~~Glli~~~~Gl~~ll~ 101 (159)
T PRK12505 27 APFVFTFGLFVMFHGADSPGGGFQGGVIVASVV-----LMLAFAFGIDATREWLDERLVVAIAVGGVLAFAAIGLGTVLL 101 (159)
T ss_pred HHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHH-----HHHHHHCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345667788888776666788888888765542 1222222210 1333334444456666655544444455
Q ss_pred HHHHHH
Q 024079 201 GTATLQ 206 (273)
Q Consensus 201 G~~Li~ 206 (273)
|...++
T Consensus 102 G~~FL~ 107 (159)
T PRK12505 102 GGAFLE 107 (159)
T ss_pred Cchhhc
Confidence 555554
No 102
>KOG4737 consensus ATPase membrane sector associated protein [Energy production and conversion]
Probab=32.73 E-value=31 Score=33.70 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=27.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHhhhhhccCCCCCCC-ccHHHHHHHh
Q 024079 204 TLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLS-DNFIVKTCQR 247 (273)
Q Consensus 204 Li~~f~wI~~ifGafLL~tg~K~~~~~ee~~d~~-~n~ivk~lrk 247 (273)
+++.|-|++.++++-|||+.|.+.. .||+ |+.|||.-..
T Consensus 282 iFni~Lw~mvil~lali~i~y~ia~-----mDPg~DSIIYRMTtt 321 (326)
T KOG4737|consen 282 IFNIFLWLMVILVLALIYIVYGIAS-----MDPGKDSIIYRMTTT 321 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc-----cCCCcceeEEEeccc
Confidence 3456789999999999999999863 2333 3455565433
No 103
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=32.68 E-value=3.6e+02 Score=23.99 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=25.0
Q ss_pred hhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024079 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207 (273)
Q Consensus 160 DNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~ 207 (273)
......+++.+. .|+++|.++.-+--.+.-+--++...++..+++.
T Consensus 117 ~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 117 EYGSSAAYVIES--WPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred hhHHHHHHHHHh--CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455556665 5777777665543333334445555556666654
No 104
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=32.53 E-value=4.1e+02 Score=24.57 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=19.4
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHh
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFG 132 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg 132 (273)
+.++|.++|...+++..+++++.+
T Consensus 83 sG~is~~~a~~~~~~l~~~~~~l~ 106 (282)
T PRK12848 83 SGAVSEKEALALFVVLVLVAFLLV 106 (282)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHH
Confidence 468899999999988888877643
No 105
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=32.34 E-value=3.6e+02 Score=23.92 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=27.8
Q ss_pred hHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHH
Q 024079 161 NLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAG 217 (273)
Q Consensus 161 NlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w--I~~ifGa 217 (273)
......++.+. .|+++|.++.-+.-....+.-.+...++..+.+.+.| .+++.++
T Consensus 111 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~ 167 (385)
T TIGR00710 111 SVISQALVRDI--YPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSL 167 (385)
T ss_pred HHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 34445555554 4666665554433333333444555666667765444 4444333
No 106
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=32.32 E-value=4.3e+02 Score=24.76 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=15.4
Q ss_pred ccchhhhhhhhHHHHHHHHHHH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVA 130 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAll 130 (273)
+.++|.||++.++.+..+++++
T Consensus 80 sG~is~~~a~~~~~~~~~~~l~ 101 (284)
T PRK12888 80 TGAVSVRTAWTGALVALAVFLG 101 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 4688999999988655544443
No 107
>PRK10489 enterobactin exporter EntS; Provisional
Probab=31.51 E-value=4.2e+02 Score=24.48 Aligned_cols=50 Identities=8% Similarity=-0.163 Sum_probs=25.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHH
Q 024079 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR--FEAVNLVLAGILLFSS 223 (273)
Q Consensus 174 VP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~--f~wI~~ifGafLL~tg 223 (273)
+|+++|.|+.-+-..+.-+.-++-..+|..+++. +.|.+++.++..+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~ 190 (417)
T PRK10489 139 VGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL 190 (417)
T ss_pred cCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5777666654332222223444555566666654 3455555554444333
No 108
>TIGR00898 2A0119 cation transport protein.
Probab=30.77 E-value=4.7e+02 Score=24.82 Aligned_cols=56 Identities=13% Similarity=-0.064 Sum_probs=28.6
Q ss_pred hHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 024079 161 NLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGIL 219 (273)
Q Consensus 161 NlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafL 219 (273)
......++.+. .|+++|.++..+.-.+..+--++..+++..+. .+.|.+++.++..
T Consensus 198 ~~~~~~~~~e~--~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~wr~~~~~~~i~~ 253 (505)
T TIGR00898 198 WVQAVVLNTEF--LPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-DWRWLQLAVSLPT 253 (505)
T ss_pred HHHHHHHhhee--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHH
Confidence 34444455554 68877776655443333333344444443333 3666666555443
No 109
>PRK13592 ubiA prenyltransferase; Provisional
Probab=30.23 E-value=4e+02 Score=25.96 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=30.5
Q ss_pred CCCCCCCCCCCcccChhhhhhccchhhhhhhhHHHHHHHHHHHHhhHh
Q 024079 88 SHENDNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (273)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~is~keA~~wS~~wI~LAllFg~~i 135 (273)
..|-|..++.-+..+ +.++|.|+|...+.+-++++++.+...
T Consensus 70 D~EIDrIN~P~RPLP------sG~VS~~~A~~~si~L~~~~l~L~~l~ 111 (299)
T PRK13592 70 DYETDRRLFPHRALP------SGRVKKKDLAIALSFIVAVSVLLNVLF 111 (299)
T ss_pred hHHHhhhcCCCCCCC------cCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667677888 558899999999988877777665443
No 110
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=30.14 E-value=2.6e+02 Score=24.48 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHhhhh
Q 024079 178 YQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA-----VNLVLAGILLFSSFKLF 227 (273)
Q Consensus 178 ~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w-----I~~ifGafLL~tg~K~~ 227 (273)
.+.+-++||.++.++....+++=.++. .|.| |.|+.|..-.+.++-.+
T Consensus 89 ~~~~~~~w~gl~~l~~q~~~l~rLTf~--e~sWDvMEPVTYfv~~~~~i~~y~yf 141 (180)
T PF04678_consen 89 KRARRLLWGGLALLVVQFGILARLTFW--EYSWDVMEPVTYFVGYGTSILGYAYF 141 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccchhhhHHHHHhHHHHHHHHHHH
Confidence 455678899988888887777777766 2776 77777666666666554
No 111
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=29.84 E-value=2.8e+02 Score=26.31 Aligned_cols=48 Identities=29% Similarity=0.432 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhc
Q 024079 180 NRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 180 ~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~ 229 (273)
-|++.|-++||++-=+--.+..+.-++ .+...+-|++||+.|.-++..
T Consensus 53 GRi~SYallG~i~G~lG~~l~~~~~~~--~~l~i~ag~~li~lGL~l~~~ 100 (232)
T COG2836 53 GRILSYALLGAILGALGVSLGQSAGLR--GVLFIIAGALLIALGLYLLAR 100 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcc
Confidence 377888888876432222222222232 456777799999999988543
No 112
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=29.22 E-value=7.5e+02 Score=26.65 Aligned_cols=47 Identities=9% Similarity=-0.084 Sum_probs=30.0
Q ss_pred HHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 024079 162 LFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (273)
Q Consensus 162 lfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w 210 (273)
....+++-.. +|++++.++.-+=-.+.-+..++-..+|..+++.+.|
T Consensus 127 p~~~a~l~~~--~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~ 173 (1140)
T PRK06814 127 PIKYSILPDH--LNKDELLGANALVEAGTFIAILLGTIIGGLATISGNF 173 (1140)
T ss_pred hHHHHhhHhh--cCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3445555554 5776666655544444446777888888888887666
No 113
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=28.83 E-value=2.7e+02 Score=26.34 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=18.8
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhh
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGL 133 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~ 133 (273)
+.++|.|+++...+....+|++.+.
T Consensus 91 sG~is~~~a~~~~i~l~~i~~~l~~ 115 (297)
T PRK12871 91 SGKLSSKNAFALFILLAAVTSALIL 115 (297)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999998877777765543
No 114
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=28.34 E-value=2.3e+02 Score=20.51 Aligned_cols=69 Identities=22% Similarity=0.005 Sum_probs=38.4
Q ss_pred HHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHH
Q 024079 153 LEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF--EAVNLVLAGILLFSS 223 (273)
Q Consensus 153 LE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f--~wI~~ifGafLL~tg 223 (273)
.-...+.-+......+.+. .|+++|.++.-+--.+.-+...+...++..+.+.. .+..++.++..+...
T Consensus 61 ~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (141)
T TIGR00880 61 QGFGAAFALVAGAALIADI--YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAF 131 (141)
T ss_pred HHHHHHHHHHhHHHHHHHH--CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHH
Confidence 3333344444455555554 67777777655544444456666666677776654 345555555544433
No 115
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=28.07 E-value=1.2e+02 Score=21.46 Aligned_cols=43 Identities=28% Similarity=0.303 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHhhhhh
Q 024079 184 SYGIAGAIVFRLSLILLGTATLQRF---EAVNLVLAGILLFSSFKLFA 228 (273)
Q Consensus 184 ~~GI~gAiv~RiIfI~~G~~Li~~f---~wI~~ifGafLL~tg~K~~~ 228 (273)
..||+||++-..++-.+|. ...+ .++..+.|+.++..-+++++
T Consensus 2 i~GiiGa~vGg~l~~~lg~--~~~~~~~~~i~aviGAiill~i~~~i~ 47 (48)
T PF04226_consen 2 ILGIIGAFVGGWLFGLLGI--NGGGSWGSFIVAVIGAIILLFIYRLIR 47 (48)
T ss_pred eeehHHHHHHHHHHHHhcc--cCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999987777776666 2212 24556666666666666543
No 116
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=27.84 E-value=4.7e+02 Score=23.84 Aligned_cols=43 Identities=21% Similarity=0.036 Sum_probs=24.1
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHH
Q 024079 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLA 216 (273)
Q Consensus 174 VP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w--I~~ifG 216 (273)
.|++.+.+..-+.-.+..+...+-..++..+.+.+.| ..++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 125 YEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 4555555555454455555666666667777765443 444443
No 117
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=27.62 E-value=6e+02 Score=24.99 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhHhhhhcChhhHHHHHHHHHH
Q 024079 123 FCVSTAVAFGLGVGFIEGASKASEFFAGYIL 153 (273)
Q Consensus 123 ~wI~LAllFg~~i~~~~G~~~a~ef~tgylL 153 (273)
.|+.+.+.|-.++..-.|+.++-.-++.|++
T Consensus 54 ~w~li~~SflyGvlHAlgPGHgKaviasyli 84 (303)
T COG2215 54 GWTLIPLSFLYGVLHALGPGHGKAVIATYLI 84 (303)
T ss_pred HHHHHHHHHHHHHHhccCCCcchHHHHHHHH
Confidence 7899988888888888877776666666654
No 118
>PLN02878 homogentisate phytyltransferase
Probab=27.40 E-value=5.7e+02 Score=24.65 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=27.4
Q ss_pred CCCCCCCcccChhhhhhccchhhhhhhhHHHHHHHHHHHHhhHh
Q 024079 92 DNTSHSPTTVDDAERQIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (273)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~is~keA~~wS~~wI~LAllFg~~i 135 (273)
|+.|..-+..+ +.++|.+++...++++..++++.+..+
T Consensus 51 DkINkP~rPIp------SG~iS~~~a~~~~~~~~~lg~~la~~~ 88 (280)
T PLN02878 51 DKVNKPYLPLA------SGEFSVATGVAIVTSFAIMSFGMGWIV 88 (280)
T ss_pred cccCCCCCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444456677 558999999998888888887766554
No 119
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=27.10 E-value=1.8e+02 Score=21.01 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHh
Q 024079 209 EAVNLVLAGILLFSSF 224 (273)
Q Consensus 209 ~wI~~ifGafLL~tg~ 224 (273)
.|+..+.|+.++++|+
T Consensus 33 ~~~~~~~g~~ll~~g~ 48 (66)
T PF11127_consen 33 GWLLGFVGAMLLVTGI 48 (66)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5778888889998886
No 120
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=26.95 E-value=5.2e+02 Score=24.09 Aligned_cols=16 Identities=31% Similarity=0.717 Sum_probs=8.7
Q ss_pred HHHHHHHHH-HHHHHHH
Q 024079 190 AIVFRLSLI-LLGTATL 205 (273)
Q Consensus 190 Aiv~RiIfI-~~G~~Li 205 (273)
++++|.++. +++..++
T Consensus 311 ~~~~rlii~P~i~~~~~ 327 (385)
T PF03547_consen 311 AVLVRLIILPLIGIGIV 327 (385)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 377885544 4444444
No 121
>COG1173 DppC ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=26.52 E-value=4.5e+02 Score=24.93 Aligned_cols=84 Identities=18% Similarity=0.239 Sum_probs=45.1
Q ss_pred ccChhhhhhccch--hhhhhhhHHHHHHHHHHHHhhHhh----hhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCC
Q 024079 100 TVDDAERQIEGRE--SYTSSVKTVAFCVSTAVAFGLGVG----FIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFK 173 (273)
Q Consensus 100 ~~~~~~~~~~~~i--s~keA~~wS~~wI~LAllFg~~i~----~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~Fk 173 (273)
-.|+-+++.=.++ ..+.++.-+++-+.++++.|..++ |+.|. .-+.+.. ++|..+|+-.+++..++...|+
T Consensus 69 GTD~~GRDi~srli~G~r~SL~I~~~~~~~~~~iG~~lG~iaGy~gG~--vD~ilmr-i~di~ls~P~lll~i~l~~~~g 145 (289)
T COG1173 69 GTDNLGRDILSRLLYGARISLLIGLLAVLISLVIGTLLGLLAGYFGGW--VDRVLMR-ITDIFLAFPSLLLAILLVAILG 145 (289)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch--HHHHHHH-HHHHHHHccHHHHHHHHHHHHC
Confidence 3444455543333 223444444444444444444444 44343 4444444 4999999999998888888766
Q ss_pred CChhhhhHHHHHHHH
Q 024079 174 VPVMYQNRVLSYGIA 188 (273)
Q Consensus 174 VP~~~Q~RvL~~GI~ 188 (273)
+..-.-++..|+.
T Consensus 146 --~~~~~iiial~i~ 158 (289)
T COG1173 146 --PGLLNLILALALV 158 (289)
T ss_pred --ccHHHHHHHHHHH
Confidence 3333444444443
No 122
>PF03203 MerC: MerC mercury resistance protein
Probab=25.75 E-value=1.3e+02 Score=24.39 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=25.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHH
Q 024079 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE------AVNLVLAGILLFSS 223 (273)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~------wI~~ifGafLL~tg 223 (273)
.+..|.+.+.+|.+|..+ ++.+..+-+.+. ++.++|++.|+..-
T Consensus 60 r~h~~~~~~~l~~~G~~l-----l~~~~~~~~~~~~~~~e~~lt~~G~~lLi~aH 109 (116)
T PF03203_consen 60 RRHRRWLPLALGVIGLAL-----LLLALFLGESYEGEHGETVLTYIGALLLIAAH 109 (116)
T ss_pred hhccchHHHHHHHHHHHH-----HHHHHHhcchhcchhhhHHHHHHHHHHHHHHH
Confidence 444466778888887653 333333333333 57777777776543
No 123
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=25.54 E-value=5.3e+02 Score=23.68 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=29.3
Q ss_pred chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHH
Q 024079 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF--EAVNLVLAGILL 220 (273)
Q Consensus 159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f--~wI~~ifGafLL 220 (273)
.........+-+. .|++.+.++.-+...+..+.-.+-..++..+.+.+ .|.+++.++..+
T Consensus 117 ~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~ 178 (406)
T PRK15402 117 FIGAVGYAAIQES--FEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAA 178 (406)
T ss_pred hHHHHHHHHHHHH--hChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 3334445555554 46665555443332233334445555666666643 345555554433
No 124
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=24.92 E-value=5.6e+02 Score=23.69 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=20.6
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~ 134 (273)
+.++|.+||...+++..+++++.+.+
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~l~~~ 102 (279)
T PRK12869 77 VGLVNRKEALAVGSALSALGTALGFL 102 (279)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999988888887766544
No 125
>COG5249 RER1 Golgi protein involved in Golgi-to-ER retrieval [Intracellular trafficking and secretion]
Probab=24.78 E-value=1.7e+02 Score=26.45 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhh
Q 024079 184 SYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227 (273)
Q Consensus 184 ~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~ 227 (273)
.||+.|.++ .+..+-+++...|-.+.|-.|++|+=.-+-++
T Consensus 36 RW~i~ggL~---~lf~iRI~~~~gwY~icY~LgiyLLn~flaFL 76 (180)
T COG5249 36 RWGITGGLF---LLFCIRIWSTGGWYLICYCLGIYLLNAFLAFL 76 (180)
T ss_pred hhhHHHHHH---HHHHHHHHhccchhhHHHHHHHHHHHHHHHHh
Confidence 577777663 12222333333334466777777766555444
No 126
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=24.67 E-value=5.2e+02 Score=23.27 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhhhhccC
Q 024079 210 AVNLVLAGILLFSSFKLFASEE 231 (273)
Q Consensus 210 wI~~ifGafLL~tg~K~~~~~e 231 (273)
+++.+.+..++|++...+..++
T Consensus 268 ~~~a~aaG~~lyv~~~ell~~~ 289 (317)
T PF02535_consen 268 ILLAFAAGTFLYVAFVELLPEE 289 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667788899998775543
No 127
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=24.10 E-value=5.1e+02 Score=27.42 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=34.0
Q ss_pred hhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Q 024079 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226 (273)
Q Consensus 160 DNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~ 226 (273)
.|+.+++.+++.+ -|..|.+...+=+.-..-.-.++++++.|+..+.|++++..++++
T Consensus 456 ~~~m~~sl~iG~~---------hl~~G~~lg~~~~~~~~~~~~a~~~~~~w~~~~~G~~~~~~~~~~ 513 (660)
T COG1269 456 SNILILSLLIGVL---------HLSLGLLLGFINRVRSGDIKGAILPQLLWLLIILGLLLLILGYKW 513 (660)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHhhcchHHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence 5566666666642 245555555443333444455566667777777777777777655
No 128
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=24.01 E-value=4.1e+02 Score=24.88 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=20.3
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhhH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGLG 134 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~~ 134 (273)
+.++|.+||...+++..+++++.+..
T Consensus 87 sG~is~~~a~~~~~~~~~~~~~l~~~ 112 (290)
T PRK12870 87 SRRLSVKVGIVIAIVALLCAAGLAFF 112 (290)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999988888887765543
No 129
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=23.97 E-value=5.7e+02 Score=23.46 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=15.4
Q ss_pred ccchhhhhhhhHHHHHHHHHHH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVA 130 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAll 130 (273)
+.++|.|++..++++..+++++
T Consensus 77 sG~is~~~a~~~~~~~~~~~~~ 98 (282)
T TIGR01475 77 SGLISKKEARTMIILSLALFLS 98 (282)
T ss_pred CCCcCHHHHHHHHHHHHHHHHH
Confidence 4578899999988765444443
No 130
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=23.89 E-value=6.4e+02 Score=24.04 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=19.8
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHhh
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAFGL 133 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllFg~ 133 (273)
+.+++.++|+..+++..+++++.+.
T Consensus 87 sG~is~~~A~~~~~~l~~~~l~la~ 111 (295)
T PRK12324 87 SGVVSVSLAYILAVVLLVASLALAY 111 (295)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999998888887776644
No 131
>PRK10091 MFS transport protein AraJ; Provisional
Probab=23.84 E-value=5.7e+02 Score=23.44 Aligned_cols=44 Identities=25% Similarity=0.150 Sum_probs=19.0
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHH
Q 024079 174 VPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF--EAVNLVLAG 217 (273)
Q Consensus 174 VP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f--~wI~~ifGa 217 (273)
.|++.|.++.-.-..+..+.=.+...++..+.+.+ .|.+++.|+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~ 165 (382)
T PRK10091 120 IKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAV 165 (382)
T ss_pred CChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHH
Confidence 45555555432211222222233344555666543 345555444
No 132
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=23.49 E-value=7.7e+02 Score=25.31 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhH
Q 024079 122 AFCVSTAVAFGLG 134 (273)
Q Consensus 122 ~~wI~LAllFg~~ 134 (273)
.+||+.-+..+-+
T Consensus 246 FlYVG~Eva~gsf 258 (422)
T COG0738 246 FLYVGAEVAIGSF 258 (422)
T ss_pred HHHHhHHHHHHHH
Confidence 4455555444433
No 133
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=23.27 E-value=91 Score=25.01 Aligned_cols=49 Identities=22% Similarity=0.367 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhhH-HHHHHHHHHHHHHhhhhhcc
Q 024079 182 VLSYGIAGAIVFRLSLILLG-TATLQRFEA-VNLVLAGILLFSSFKLFASE 230 (273)
Q Consensus 182 vL~~GI~gAiv~RiIfI~~G-~~Li~~f~w-I~~ifGafLL~tg~K~~~~~ 230 (273)
+|.||++|-.-+-++--++| ...+.+.-+ +.-+-|++.+....|...++
T Consensus 18 alNWGLvG~f~fdLvaalfG~gs~lsri~YiivGlagv~~il~l~k~~~~~ 68 (79)
T COG2155 18 ALNWGLVGLFGFDLVAALFGVGSMLTRIIYIIVGLAGVYQILPLFKVCEKK 68 (79)
T ss_pred hhhhceeeeehhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 46777777666666666666 444444444 33344666666666665444
No 134
>COG0428 Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism]
Probab=23.09 E-value=3.4e+02 Score=25.32 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=53.4
Q ss_pred HHHHHHHHhhchhHH---HHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Q 024079 149 AGYILEQSLSVDNLF---VFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE-----AVNLVLAGILL 220 (273)
Q Consensus 149 tgylLE~sLSvDNlf---VfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~-----wI~~ifGafLL 220 (273)
.|..+..++++.|+. +.+..... -..-+.|.+.++.+.+++ =.+...+|.+++..+. +.+.+.+..++
T Consensus 149 ~gi~~alaI~ihnipEG~av~~pL~~---~~~s~~~~l~~~~lsg~~-~~lgavig~~~~~~~~~~~l~~~la~aaG~mv 224 (266)
T COG0428 149 LGIALALAIAIHNIPEGLAVALPLAG---AGRSRLKALLVAVLSGLA-EPLGAVIGAYLLGISSPLVLPFALAFAAGAMV 224 (266)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHh---cCCchHHHHHHHHHHHhH-HHHHHHHHHHHHhhchHHHHHHHHHHHhhcch
Confidence 677888899999973 33333332 124577899999888764 2344455666665444 67788889999
Q ss_pred HHHhhhhhcc
Q 024079 221 FSSFKLFASE 230 (273)
Q Consensus 221 ~tg~K~~~~~ 230 (273)
|..++++..+
T Consensus 225 ~v~~~eliPe 234 (266)
T COG0428 225 YVVVDELLPE 234 (266)
T ss_pred hhhHHHHhhH
Confidence 9999998765
No 135
>PRK03557 zinc transporter ZitB; Provisional
Probab=22.88 E-value=3.4e+02 Score=25.50 Aligned_cols=19 Identities=16% Similarity=0.487 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhhhhc
Q 024079 211 VNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 211 I~~ifGafLL~tg~K~~~~ 229 (273)
.-++.++++++++++++++
T Consensus 189 ~~ilis~~i~~~~~~l~~~ 207 (312)
T PRK03557 189 LSILVSVLVLRSAWRLLKE 207 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5677799999999999886
No 136
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=22.86 E-value=2.8e+02 Score=26.62 Aligned_cols=51 Identities=24% Similarity=0.357 Sum_probs=28.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHh------hhHHH-HHHHHHHHHHHhh
Q 024079 175 PVMYQNRVLSYGIAGAIVFRLSLIL-LGTATLQR------FEAVN-LVLAGILLFSSFK 225 (273)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv~RiIfI~-~G~~Li~~------f~wI~-~ifGafLL~tg~K 225 (273)
++--|+|.+.+.+++++++=+...+ +|++-.++ +.|+. ++.|+++++-++.
T Consensus 191 ~~faRkR~i~f~llgllfliiaigltvGT~~~A~~~~giY~~wv~~~l~a~~~~~rs~y 249 (256)
T PF09788_consen 191 PRFARKRAIIFFLLGLLFLIIAIGLTVGTWTYAKTYGGIYVSWVGLFLIALICLIRSIY 249 (256)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHhhcCcEeHHHHHHHHHHHHHHHHhhe
Confidence 3456889999999988764333332 35544431 34543 3345555554543
No 137
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=22.40 E-value=7.2e+02 Score=24.08 Aligned_cols=39 Identities=23% Similarity=0.181 Sum_probs=22.9
Q ss_pred ChhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHhhh--HHHHHH
Q 024079 175 PVMYQNRVLSYGIAGAIV--FRLSLILLGTATLQRFE--AVNLVL 215 (273)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv--~RiIfI~~G~~Li~~f~--wI~~if 215 (273)
|+++|. ...|+.++.. .-.+-..+|..+.+.+. |++++.
T Consensus 125 ~~~~r~--~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~ 167 (495)
T PRK14995 125 EEKQRN--MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLIN 167 (495)
T ss_pred CHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence 454444 4456665543 45666777888887654 454443
No 138
>COG4709 Predicted membrane protein [Function unknown]
Probab=22.08 E-value=3.4e+02 Score=25.10 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=14.3
Q ss_pred hhhhhhhHHHHHHHHHHHHhhHhhh
Q 024079 113 SYTSSVKTVAFCVSTAVAFGLGVGF 137 (273)
Q Consensus 113 s~keA~~wS~~wI~LAllFg~~i~~ 137 (273)
+.+.+......-..+++.|+++++.
T Consensus 77 n~~~aii~~~~L~~~~v~i~Lpl~~ 101 (195)
T COG4709 77 NVRRAIIALIGLGLLAVIIGLPLLI 101 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566655556666666655543
No 139
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.88 E-value=1.2e+02 Score=23.86 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhHhhhhc
Q 024079 120 TVAFCVSTAVAFGLGVGFIE 139 (273)
Q Consensus 120 wS~~wI~LAllFg~~i~~~~ 139 (273)
-.++|+.+|+++|+..+++.
T Consensus 5 lail~ivl~ll~G~~~G~fi 24 (71)
T COG3763 5 LAILLIVLALLAGLIGGFFI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34589999999998877654
No 140
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=21.87 E-value=3.2e+02 Score=24.39 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhccC
Q 024079 194 RLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE 231 (273)
Q Consensus 194 RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~K~~~~~e 231 (273)
=++++++|+..+.-.+-+.|+||+..++.-.=|+.+.+
T Consensus 43 A~l~~ll~a~Fla~~qIiVYvGAI~VLflFvIMll~~~ 80 (198)
T PRK06638 43 AGLYFLLGAEFLGVVQIIVYVGAVMVLFLFVVMMLDVD 80 (198)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34677888888887888999999999999888887643
No 141
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=21.45 E-value=7.2e+02 Score=23.75 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=16.6
Q ss_pred ccchhhhhhhhHHHHHHHHHHHH
Q 024079 109 EGRESYTSSVKTVAFCVSTAVAF 131 (273)
Q Consensus 109 ~~~is~keA~~wS~~wI~LAllF 131 (273)
+.++|.+||+..+++-..++++.
T Consensus 85 sG~is~~~A~~~~~~~~~~~~~~ 107 (294)
T PRK12873 85 RGKISLKTAYSLLIVLLLLSLFV 107 (294)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 45888999998877666555543
No 142
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=21.16 E-value=5.1e+02 Score=21.91 Aligned_cols=51 Identities=24% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhHhhhhcChhhHHHHH-HHHHHHHHhhchhHHHHHHHhCc
Q 024079 121 VAFCVSTAVAFGLGVGFIEGASKASEFF-AGYILEQSLSVDNLFVFVLIFKY 171 (273)
Q Consensus 121 S~~wI~LAllFg~~i~~~~G~~~a~ef~-tgylLE~sLSvDNlfVfalIf~~ 171 (273)
+++=++.+++++.++....|.+...--. ..-++=...++||.|+++-.+..
T Consensus 12 ~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~ 63 (153)
T PF12349_consen 12 GIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRR 63 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445556666666666666644332211 12234457899999999988775
No 143
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=21.12 E-value=4.2e+02 Score=21.11 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=33.4
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHhhhhhccCC
Q 024079 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA----VNLVLAGILLFSSFKLFASEED 232 (273)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w----I~~ifGafLL~tg~K~~~~~ee 232 (273)
-.++|+-.+..|++.|++.=.-....-...+++.+- ..++|=.+..|-+++.+...++
T Consensus 12 ~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~llElvGlgyt~wF~~ryLL~~~~ 73 (90)
T PF14159_consen 12 FDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPGLLELVGLGYTGWFVYRYLLFAEN 73 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHhHHHHHHHcChHh
Confidence 345677777777766654333333333334555443 5666666778888887655443
No 144
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=20.51 E-value=1.7e+02 Score=22.76 Aligned_cols=33 Identities=9% Similarity=0.298 Sum_probs=24.0
Q ss_pred HHHHHHHHhhHhhhhcChh-------hHHHHHHHHHHHHH
Q 024079 124 CVSTAVAFGLGVGFIEGAS-------KASEFFAGYILEQS 156 (273)
Q Consensus 124 wI~LAllFg~~i~~~~G~~-------~a~ef~tgylLE~s 156 (273)
|+.+++++++.+..-.+.+ .+.+|...|+..+.
T Consensus 2 WIiiSIvLai~lLI~l~~ns~lr~eiealkY~N~yL~~~~ 41 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSELRKEIEALKYMNDYLFDQF 41 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888877765533 36778888876654
No 145
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=20.31 E-value=9.2e+02 Score=24.55 Aligned_cols=117 Identities=18% Similarity=0.030 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024079 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG 201 (273)
Q Consensus 122 ~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G 201 (273)
++.++..+.....+.+-..+..........+.=.+...=|......+=.. +|+++|-|++-.--......-.+-.+++
T Consensus 286 lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~--~P~~~~GRv~si~~~~~~g~~~lGsll~ 363 (524)
T PF05977_consen 286 LVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLS--VPDWVRGRVFSIYQMVFFGGMPLGSLLW 363 (524)
T ss_pred hhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhH--HHHHHHHHHHHHHhhhhhc-----cCCCCCCCccH
Q 024079 202 TATLQRFEA--VNLVLAGILLFSSFKLFAS-----EEDDTDLSDNF 240 (273)
Q Consensus 202 ~~Li~~f~w--I~~ifGafLL~tg~K~~~~-----~ee~~d~~~n~ 240 (273)
-.+.+.+.. .+.+.|+.++..+.-.++. ++.|.++++.|
T Consensus 364 G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~~d~~~~~~~ 409 (524)
T PF05977_consen 364 GFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEELDLDPSEHW 409 (524)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCccccC
No 146
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=20.28 E-value=6.6e+02 Score=28.17 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 024079 178 YQNRVLSYGIAGAIVFRLSLIL 199 (273)
Q Consensus 178 ~Q~RvL~~GI~gAiv~RiIfI~ 199 (273)
.++|.+++|+++.+++-++.+.
T Consensus 985 ~~N~~l~~~~~~~~~l~~~~~~ 1006 (1053)
T TIGR01523 985 VENKFLAWAIAFAAVSAFPTIY 1006 (1053)
T ss_pred ccCHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999998766664
No 147
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=20.22 E-value=3.1e+02 Score=19.03 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHh----hhHHHHHHHHHHHHHHhhhhhc
Q 024079 196 SLILLGTATLQR----FEAVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 196 IfI~~G~~Li~~----f~wI~~ifGafLL~tg~K~~~~ 229 (273)
+++.+|..++.+ ...+.++.|.+++..|+-.+..
T Consensus 5 l~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l~~ 42 (72)
T PF03729_consen 5 LFIVLGILLLFNPDASLAALAIILGIWLIISGIFQLIS 42 (72)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556665541 2346677788888877766543
No 148
>PRK01030 tetrahydromethanopterin S-methyltransferase subunit C; Provisional
Probab=20.07 E-value=3.6e+02 Score=26.04 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=39.6
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhhhhhc
Q 024079 175 PVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR-FEAVNLVLAGILLFSSFKLFAS 229 (273)
Q Consensus 175 P~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~-f~wI~~ifGafLL~tg~K~~~~ 229 (273)
|.|.|.|-|..++--+.+.=+++-++....... .+++..+-|++.=+.+++.+.+
T Consensus 188 P~E~q~RTL~la~e~G~ls~ii~gi~s~~~~~~~~~~i~iivg~i~W~~~y~~y~~ 243 (264)
T PRK01030 188 PNESQDRTLTLAVECGFLSMIIFGIASLAFLGLAAAIISIIVGLIGWYYAYVKFVK 243 (264)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988877666555554444442 3556777788888888877654
No 149
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=20.05 E-value=4.7e+02 Score=25.90 Aligned_cols=29 Identities=28% Similarity=0.248 Sum_probs=18.7
Q ss_pred cChhhHHHHHHHHHHHHHhhchhHHHHHH
Q 024079 139 EGASKASEFFAGYILEQSLSVDNLFVFVL 167 (273)
Q Consensus 139 ~G~~~a~ef~tgylLE~sLSvDNlfVfal 167 (273)
.|.+-....++|.++=.=+++||.+|+.-
T Consensus 294 ~g~~l~l~siaglil~iG~~VD~~Ivi~e 322 (397)
T TIGR01129 294 FGATLTLPGIAGLILTIGMAVDANVLIYE 322 (397)
T ss_pred HCCCccHHHHHHHHHHhheeeeceEEEeH
Confidence 34444555666777777778888876553
Done!