Query 024079
Match_columns 273
No_of_seqs 166 out of 1219
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 17:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024079.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024079hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 71.1 50 0.0017 28.4 12.1 51 157-209 133-183 (451)
2 4aps_A DI-OR tripeptide H+ sym 59.9 92 0.0031 27.4 13.9 60 155-216 120-183 (491)
3 2gfp_A EMRD, multidrug resista 48.8 88 0.003 26.4 8.7 65 158-224 103-169 (375)
4 3o7q_A L-fucose-proton symport 44.8 1.5E+02 0.0051 25.4 13.7 49 155-205 129-177 (438)
5 1pw4_A Glycerol-3-phosphate tr 31.1 2.5E+02 0.0085 24.0 13.6 53 165-219 368-423 (451)
6 3ixz_A Potassium-transporting 21.6 5.7E+02 0.02 26.6 10.9 23 178-200 960-982 (1034)
7 3rko_J NADH-quinone oxidoreduc 14.6 5.6E+02 0.019 21.8 13.4 25 118-142 25-49 (184)
8 2ls4_A High affinity copper up 18.6 37 0.0013 20.9 0.0 16 123-138 3-18 (26)
9 2esy_A LUNG surfactant protein 13.2 78 0.0027 20.5 1.3 11 25-35 1-11 (32)
10 3aqp_A Probable secdf protein- 12.7 8.3E+02 0.028 24.5 9.3 106 114-224 293-415 (741)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=71.14 E-value=50 Score=28.44 Aligned_cols=51 Identities=10% Similarity=-0.170 Sum_probs=30.3
Q ss_pred hhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024079 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (273)
Q Consensus 157 LSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~ 209 (273)
.+.-.....+++... .|+++|.++.-+--.+.-+.-++...++..+++.+.
T Consensus 133 ~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 133 QGMGWPPCGRTMVHW--WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHTHHHHHHHHHTT--CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred hhhccchHHHHHHHH--CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666777776 577666665544333334455566677777777554
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=59.89 E-value=92 Score=27.45 Aligned_cols=60 Identities=13% Similarity=-0.071 Sum_probs=35.0
Q ss_pred HHhhchhHHHHHHHhCcCCCChhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhH--HHHHHH
Q 024079 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI--AGAIVFRLSLILLGTATLQRFEA--VNLVLA 216 (273)
Q Consensus 155 ~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI--~gAiv~RiIfI~~G~~Li~~f~w--I~~ifG 216 (273)
...+..+....+++.+. .|++.|.|....|+ .+.-+.-++-..++..+.+.+.| .+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 120 IGTGFLKPNVSTLVGTL--YDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp HHHHHHHHHHHHHHHHH--SSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHH--cCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33444555566666665 57777777666666 33334555666777777775444 444443
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=48.81 E-value=88 Score=26.42 Aligned_cols=65 Identities=17% Similarity=0.023 Sum_probs=34.3
Q ss_pred hchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHh
Q 024079 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF 224 (273)
Q Consensus 158 SvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li~~f~w--I~~ifGafLL~tg~ 224 (273)
+.-+......+.+. .|+++|.++.-+--.+.-+.-++-..++..+.+.+.| .+++.++..+..++
T Consensus 103 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 103 GVGGVMARTLPRDL--YERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHH--HHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhhHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33444444555554 3556666655443333444556666677777765444 55555555444443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=44.76 E-value=1.5e+02 Score=25.38 Aligned_cols=49 Identities=8% Similarity=-0.029 Sum_probs=29.0
Q ss_pred HHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024079 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205 (273)
Q Consensus 155 ~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAiv~RiIfI~~G~~Li 205 (273)
...+.-...+..++.+. .|+++|.++.-+--.+.-+-.++...++..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVL--GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHS--SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHhhhhHHHHHHHH--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666675 58777777654443333445556666666666
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=31.13 E-value=2.5e+02 Score=23.99 Aligned_cols=53 Identities=8% Similarity=-0.038 Sum_probs=27.7
Q ss_pred HHHHhCcCCCChhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHh--hhHHHHHHHHHH
Q 024079 165 FVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQR--FEAVNLVLAGIL 219 (273)
Q Consensus 165 falIf~~FkVP~~~Q~RvL~~GI~gAiv-~RiIfI~~G~~Li~~--f~wI~~ifGafL 219 (273)
..++.+. .|++.|-++.-+-....-+ ..++...++..+.+. +.+.+++.+++.
T Consensus 368 ~~~~~~~--~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 423 (451)
T 1pw4_A 368 GLHALEL--APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGS 423 (451)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHH
T ss_pred HHHHHHH--hchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3444443 5766555544333333334 666777777777775 344444444433
No 6
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=21.56 E-value=5.7e+02 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 024079 178 YQNRVLSYGIAGAIVFRLSLILL 200 (273)
Q Consensus 178 ~Q~RvL~~GI~gAiv~RiIfI~~ 200 (273)
++++.+.+++++.+++-++++.+
T Consensus 960 ~~N~~l~~~~~~~~~l~~~~~~~ 982 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVCIGCFLCYC 982 (1034)
T ss_pred cccHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999888777644
No 7
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=14.63 E-value=5.6e+02 Score=21.80 Aligned_cols=25 Identities=20% Similarity=0.044 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHhhHhhhhcChh
Q 024079 118 VKTVAFCVSTAVAFGLGVGFIEGAS 142 (273)
Q Consensus 118 ~~wS~~wI~LAllFg~~i~~~~G~~ 142 (273)
...|++|..+.+.....+|+..|.+
T Consensus 25 ~v~s~l~Li~~f~~~a~l~~ll~a~ 49 (184)
T 3rko_J 25 PVHALLYLIISLLAISGVFFSLGAY 49 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChH
Confidence 3456778888777777788777763
No 8
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=18.58 E-value=37 Score=20.94 Aligned_cols=16 Identities=38% Similarity=0.546 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhHhhhh
Q 024079 123 FCVSTAVAFGLGVGFI 138 (273)
Q Consensus 123 ~wI~LAllFg~~i~~~ 138 (273)
.|+.+|++.|+.++++
T Consensus 3 g~l~iavvlGa~~Gyf 18 (26)
T 2ls4_A 3 GYLCIAVAAGAGTGYF 18 (26)
Confidence 4888999998888765
No 9
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=13.19 E-value=78 Score=20.49 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=9.0
Q ss_pred cCCCcCCCCCc
Q 024079 25 SPTSTSQVPKL 35 (273)
Q Consensus 25 ~~~~~~~~~~~ 35 (273)
+||+|++.|.-
T Consensus 1 sPPdYSa~P~g 11 (32)
T 2esy_A 1 SPPDYSAAPRG 11 (32)
T ss_dssp CCCCCCSCCCS
T ss_pred CCCccccCcCc
Confidence 58899988876
No 10
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=12.75 E-value=8.3e+02 Score=24.46 Aligned_cols=106 Identities=15% Similarity=0.089 Sum_probs=0.0
Q ss_pred hh-hhhhHHHHHHHHHHHHhhHhhhhcChhhHHHHHHHHHHHHHhhchhHHHHHHHhCcCCCChhhhh------------
Q 024079 114 YT-SSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQN------------ 180 (273)
Q Consensus 114 ~k-eA~~wS~~wI~LAllFg~~i~~~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~~FkVP~~~Q~------------ 180 (273)
++ .+.....+=+.++++...++....|..-...-++|.++=.-+++||.+++.- ++-++.++
T Consensus 293 ~r~~~~li~~~~l~~~i~~~~~~l~l~g~~l~l~~i~glil~iGi~VD~~I~i~e-----ri~e~~~~g~~~~~Ai~~~~ 367 (741)
T 3aqp_A 293 YGPHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNVLSFE-----RIKEELRAGKKLRQAIPEGF 367 (741)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHTTTCCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHhchhhhHH-----HHHHHHHcCCCHHHHHHHHH
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 024079 181 ----RVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSF 224 (273)
Q Consensus 181 ----RvL~~GI~gAiv~RiIfI~~G~~Li~~f~wI~~ifGafLL~tg~ 224 (273)
+.++.+-+-.++-=+.+.+.+...+..|.+...++=++=+++++
T Consensus 368 ~~~~~~Il~s~lTt~i~f~~L~~~~~~~~~~fa~~~~~gi~~s~~~al 415 (741)
T 3aqp_A 368 RHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVILAIGVVASVFSNL 415 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHH
Done!