Query 024079
Match_columns 273
No_of_seqs 166 out of 1219
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 17:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024079.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024079hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 37.2 77 0.0056 23.7 12.6 70 152-223 321-393 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 29.7 1.2E+02 0.0086 23.6 13.4 27 155-183 128-154 (447)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 24.6 1.5E+02 0.011 23.0 11.9 46 159-208 359-407 (447)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 17.5 52 0.0038 20.3 2.9 24 173-196 7-30 (37)
5 d2e74e1 f.23.24.1 (E:1-32) Pet 6.0 1.8E+02 0.013 17.0 2.4 8 183-190 14-21 (32)
6 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.5 3.2E+02 0.023 19.0 4.1 35 217-251 51-86 (107)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 5.3 3.6E+02 0.026 18.3 4.2 36 216-251 44-80 (100)
8 d1iwga8 f.35.1.1 (A:513-566,A: 5.0 3.8E+02 0.028 20.4 4.7 33 138-170 104-136 (222)
9 d1xioa_ f.13.1.1 (A:) Sensory 4.9 6.4E+02 0.047 19.1 6.3 8 219-226 139-146 (226)
10 d1be3k_ f.23.15.1 (K:) Subunit 4.7 2.5E+02 0.018 15.7 2.3 16 178-193 3-18 (26)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=37.24 E-value=77 Score=23.74 Aligned_cols=70 Identities=11% Similarity=0.019 Sum_probs=37.3
Q ss_pred HHHHHhhchhHHHHHHHhCcCCCChhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHH
Q 024079 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA-IVFRLSLILLGTATLQRF--EAVNLVLAGILLFSS 223 (273)
Q Consensus 152 lLE~sLSvDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gA-iv~RiIfI~~G~~Li~~f--~wI~~ifGafLL~tg 223 (273)
+.-...+.-+......+.+. .|++.|-++.-.....+ -+..++...++..+.+.+ .+..++.|++.+..+
T Consensus 321 l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 393 (417)
T d1pv7a_ 321 LHMFEVPFLLVGCFKYITSQ--FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 33344455555555666664 78877766543222111 134556666677777764 345555555544433
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=29.67 E-value=1.2e+02 Score=23.60 Aligned_cols=27 Identities=0% Similarity=-0.218 Sum_probs=16.1
Q ss_pred HHhhchhHHHHHHHhCcCCCChhhhhHHH
Q 024079 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVL 183 (273)
Q Consensus 155 ~sLSvDNlfVfalIf~~FkVP~~~Q~RvL 183 (273)
...++-......++... .|+++|.++.
T Consensus 128 ~~~~~~~~~~~~~i~~~--~~~~~r~~~~ 154 (447)
T d1pw4a_ 128 WFQGMGWPPCGRTMVHW--WSQKERGGIV 154 (447)
T ss_dssp HHHHHTHHHHHHHHHTT--CTTTHHHHHH
T ss_pred HhhhhhhhHHHHHHHHH--HHhhcccccc
Confidence 33344555566667776 5777666654
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=24.65 E-value=1.5e+02 Score=23.02 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=20.6
Q ss_pred chhHHHHHHHhCcCCCChhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHhh
Q 024079 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI---VFRLSLILLGTATLQRF 208 (273)
Q Consensus 159 vDNlfVfalIf~~FkVP~~~Q~RvL~~GI~gAi---v~RiIfI~~G~~Li~~f 208 (273)
.-+......+... .|++.|-++ .|+...+ .--++...++..+.+.+
T Consensus 359 ~~~~~~~~~~~~~--~p~~~~g~~--~g~~~~~~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 359 GPVMLIGLHALEL--APKKAAGTA--AGFTGLFGYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp HHHHHHHHHHHHT--SCTTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHH--cCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444443 576655444 3443222 12233344555566644
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.50 E-value=52 Score=20.33 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=16.8
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHH
Q 024079 173 KVPVMYQNRVLSYGIAGAIVFRLS 196 (273)
Q Consensus 173 kVP~~~Q~RvL~~GI~gAiv~RiI 196 (273)
+.|-+.-+.-|+||++.-.++-++
T Consensus 7 ~q~veLNrtsLy~GlLlifvl~vL 30 (37)
T d2axtl1 7 RQPVELNRTSLYLGLLLILVLALL 30 (37)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHHHHHHHH
Confidence 456677788899999865554443
No 5
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.03 E-value=1.8e+02 Score=17.01 Aligned_cols=8 Identities=50% Similarity=0.688 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 024079 183 LSYGIAGA 190 (273)
Q Consensus 183 L~~GI~gA 190 (273)
|++||...
T Consensus 14 lffgiavg 21 (32)
T d2e74e1 14 LFFGIAVG 21 (32)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 34444333
No 6
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.53 E-value=3.2e+02 Score=18.95 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=21.2
Q ss_pred HHHHHHHhhhhhccC-CCCCCCccHHHHHHHhhccc
Q 024079 217 GILLFSSFKLFASEE-DDTDLSDNFIVKTCQRFIPV 251 (273)
Q Consensus 217 afLL~tg~K~~~~~e-e~~d~~~n~ivk~lrk~lPv 251 (273)
..++|..+|+-+.++ ...+.++|...-.++..+|+
T Consensus 51 ~~~~~~~~~~r~~~~~~~~~~~~n~~lEi~WTviP~ 86 (107)
T d3ehbb2 51 LLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPV 86 (107)
T ss_dssp HHHHHHHHHSBTTTSSSCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccCCccccccccchHHHHHHHHHHH
Confidence 356677777644433 23345667777777777764
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.25 E-value=3.6e+02 Score=18.27 Aligned_cols=36 Identities=8% Similarity=0.351 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhhhccCC-CCCCCccHHHHHHHhhccc
Q 024079 216 AGILLFSSFKLFASEED-DTDLSDNFIVKTCQRFIPV 251 (273)
Q Consensus 216 GafLL~tg~K~~~~~ee-~~d~~~n~ivk~lrk~lPv 251 (273)
...++|..+|.-+++++ ..+.++|...-.++..+|+
T Consensus 44 ~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP~ 80 (100)
T d3dtub2 44 TLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPI 80 (100)
T ss_dssp HHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhccCCCCCccccCcchHHHHHHHHHH
Confidence 34555666666544433 2334567667777777764
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.99 E-value=3.8e+02 Score=20.42 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=23.3
Q ss_pred hcChhhHHHHHHHHHHHHHhhchhHHHHHHHhC
Q 024079 138 IEGASKASEFFAGYILEQSLSVDNLFVFVLIFK 170 (273)
Q Consensus 138 ~~G~~~a~ef~tgylLE~sLSvDNlfVfalIf~ 170 (273)
..|.+--.--+.|.++=.-+.+||.+++.--..
T Consensus 104 ~~g~~~~~~~~~g~i~l~Gi~v~~~i~~~~~~~ 136 (222)
T d1iwga8 104 FRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAK 136 (222)
T ss_dssp HTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCchhhhhcccccchhhhhhhHHHHHHHHhc
Confidence 345444444566777888899999999987554
No 9
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=4.95 E-value=6.4e+02 Score=19.11 Aligned_cols=8 Identities=13% Similarity=0.351 Sum_probs=3.1
Q ss_pred HHHHHhhh
Q 024079 219 LLFSSFKL 226 (273)
Q Consensus 219 LL~tg~K~ 226 (273)
.++.-+.+
T Consensus 139 f~~i~y~l 146 (226)
T d1xioa_ 139 FLIILWGI 146 (226)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 10
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.66 E-value=2.5e+02 Score=15.67 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHHHH
Q 024079 178 YQNRVLSYGIAGAIVF 193 (273)
Q Consensus 178 ~Q~RvL~~GI~gAiv~ 193 (273)
|-+.+-+||-.||+-+
T Consensus 3 wvptaqlwgavgavgl 18 (26)
T d1be3k_ 3 WVPTAQLWGAVGAVGL 18 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhhhcceeE
Confidence 3445678999998743
Done!