Query 024081
Match_columns 272
No_of_seqs 279 out of 933
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 17:53:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024081.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024081hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hst_A Histone H5; chromosomal 99.9 3.7E-23 1.3E-27 161.8 7.8 74 107-180 3-81 (90)
2 1uss_A Histone H1; DNA binding 99.9 5.3E-23 1.8E-27 160.2 8.3 74 107-180 3-83 (88)
3 1uhm_A Histone H1, histone HHO 99.9 6.8E-23 2.3E-27 156.0 7.3 70 109-178 2-77 (78)
4 1ust_A Histone H1; DNA binding 99.9 2E-22 6.8E-27 158.6 6.1 73 107-179 3-81 (93)
5 2rqp_A Heterochromatin protein 99.8 2.7E-22 9.2E-27 155.9 1.9 74 107-180 5-85 (88)
6 1ghc_A GH1; chromosomal protei 99.8 7.2E-21 2.4E-25 143.3 0.7 68 109-177 1-74 (75)
7 1x58_A Hypothetical protein 49 99.8 3.9E-19 1.3E-23 130.3 4.9 54 3-60 6-59 (62)
8 2lso_A Histone H1X; structural 99.6 4.8E-20 1.6E-24 142.2 0.0 68 112-179 6-79 (83)
9 2aje_A Telomere repeat-binding 99.7 5E-18 1.7E-22 136.3 5.6 58 2-61 10-67 (105)
10 2roh_A RTBP1, telomere binding 99.7 1.5E-17 5.2E-22 136.7 4.1 57 2-60 28-84 (122)
11 2juh_A Telomere binding protei 99.7 1.6E-17 5.6E-22 136.4 3.5 57 2-60 14-70 (121)
12 2ckx_A NGTRF1, telomere bindin 99.7 2.4E-17 8.1E-22 127.2 3.8 53 6-60 1-53 (83)
13 3sjm_A Telomeric repeat-bindin 99.7 4.3E-17 1.5E-21 119.8 4.4 54 3-60 9-62 (64)
14 1w0t_A Telomeric repeat bindin 99.6 1.3E-15 4.6E-20 107.1 4.5 52 4-59 1-52 (53)
15 1ity_A TRF1; helix-turn-helix, 99.5 3.8E-15 1.3E-19 110.0 4.5 56 2-61 7-62 (69)
16 1guu_A C-MYB, MYB proto-oncoge 99.4 6.9E-14 2.4E-18 97.6 4.9 50 4-59 2-51 (52)
17 1gvd_A MYB proto-oncogene prot 99.4 2.1E-13 7.1E-18 95.2 5.5 50 4-59 2-51 (52)
18 2d9a_A B-MYB, MYB-related prot 99.4 1.8E-13 6.3E-18 98.1 5.2 53 2-60 5-57 (60)
19 2dim_A Cell division cycle 5-l 99.3 1.3E-12 4.5E-17 96.5 5.3 54 2-61 6-59 (70)
20 1x41_A Transcriptional adaptor 99.3 1.4E-12 4.9E-17 93.9 4.6 53 2-60 5-57 (60)
21 2elk_A SPCC24B10.08C protein; 99.3 2.1E-12 7.2E-17 92.6 3.8 48 4-57 8-56 (58)
22 2llk_A Cyclin-D-binding MYB-li 99.1 2.1E-11 7.2E-16 91.8 4.1 49 3-59 21-69 (73)
23 1gv2_A C-MYB, MYB proto-oncoge 99.1 5.5E-11 1.9E-15 93.4 5.8 51 3-59 2-52 (105)
24 2cu7_A KIAA1915 protein; nucle 99.1 2.9E-11 1E-15 89.8 3.4 51 3-60 7-57 (72)
25 2yum_A ZZZ3 protein, zinc fing 99.1 3.5E-11 1.2E-15 89.8 3.7 52 3-60 6-62 (75)
26 3zqc_A MYB3; transcription-DNA 99.1 9.3E-11 3.2E-15 96.0 6.4 105 5-165 2-106 (131)
27 2k9n_A MYB24; R2R3 domain, DNA 99.1 5.3E-11 1.8E-15 94.3 4.7 85 5-143 1-85 (107)
28 3osg_A MYB21; transcription-DN 99.0 1.5E-10 5E-15 94.3 5.3 52 2-60 8-59 (126)
29 1h8a_C AMV V-MYB, MYB transfor 99.0 1.5E-10 5.1E-15 94.2 5.2 51 3-59 25-75 (128)
30 2din_A Cell division cycle 5-l 99.0 6E-11 2E-15 86.6 2.5 50 3-60 7-56 (66)
31 2yus_A SWI/SNF-related matrix- 99.0 1.1E-10 3.9E-15 88.9 3.5 48 4-58 17-64 (79)
32 1gv2_A C-MYB, MYB proto-oncoge 99.0 3E-10 1E-14 89.1 5.5 50 3-59 54-103 (105)
33 3osg_A MYB21; transcription-DN 98.9 5.5E-10 1.9E-14 90.9 4.7 50 3-59 60-109 (126)
34 2k9n_A MYB24; R2R3 domain, DNA 98.9 4.3E-10 1.5E-14 89.0 3.6 51 3-60 51-101 (107)
35 1h8a_C AMV V-MYB, MYB transfor 98.9 1E-09 3.4E-14 89.3 5.5 50 3-59 77-126 (128)
36 3zqc_A MYB3; transcription-DNA 98.9 1E-09 3.4E-14 89.8 5.4 51 3-60 52-102 (131)
37 2cqr_A RSGI RUH-043, DNAJ homo 98.9 9.4E-10 3.2E-14 82.7 3.7 50 4-59 17-69 (73)
38 2ltp_A Nuclear receptor corepr 98.4 2.2E-10 7.6E-15 88.7 0.0 51 3-60 14-64 (89)
39 1h89_C C-MYB, MYB proto-oncoge 98.9 2.1E-09 7.3E-14 90.2 5.6 51 3-59 56-106 (159)
40 1h89_C C-MYB, MYB proto-oncoge 98.7 8.3E-09 2.8E-13 86.6 5.4 50 3-59 108-157 (159)
41 2cjj_A Radialis; plant develop 98.7 9.3E-09 3.2E-13 80.7 3.1 61 4-70 7-71 (93)
42 1ign_A Protein (RAP1); RAP1,ye 98.5 4.9E-08 1.7E-12 88.2 4.6 52 3-60 6-62 (246)
43 2cqq_A RSGI RUH-037, DNAJ homo 98.3 2.9E-07 1E-11 68.9 3.8 61 3-70 6-69 (72)
44 2eqr_A N-COR1, N-COR, nuclear 98.3 7.3E-07 2.5E-11 64.2 4.7 48 4-58 11-58 (61)
45 3hm5_A DNA methyltransferase 1 97.9 7.5E-06 2.6E-10 64.2 3.8 54 6-61 31-84 (93)
46 4b4c_A Chromodomain-helicase-D 97.7 3.2E-05 1.1E-09 67.0 5.5 55 5-59 134-196 (211)
47 2iw5_B Protein corest, REST co 97.7 2.3E-05 7.8E-10 70.4 4.4 51 3-60 131-181 (235)
48 1wgx_A KIAA1903 protein; MYB D 97.5 6.4E-05 2.2E-09 56.5 3.7 50 5-60 8-60 (73)
49 2xb0_X Chromo domain-containin 97.3 0.0001 3.4E-09 67.6 2.7 32 7-38 170-201 (270)
50 1fex_A TRF2-interacting telome 97.3 0.00019 6.6E-09 51.5 3.6 49 5-58 2-58 (59)
51 4iej_A DNA methyltransferase 1 97.0 0.00051 1.8E-08 53.8 3.7 53 6-60 31-83 (93)
52 2yqk_A Arginine-glutamic acid 96.9 0.00084 2.9E-08 48.5 4.4 46 5-56 9-54 (63)
53 1ofc_X ISWI protein; nuclear p 96.9 0.00042 1.4E-08 64.6 2.9 58 3-60 210-276 (304)
54 2crg_A Metastasis associated p 96.7 0.0022 7.7E-08 47.2 4.8 48 3-56 6-53 (70)
55 2ebi_A DNA binding protein GT- 96.6 0.00038 1.3E-08 52.6 0.4 55 4-60 3-66 (86)
56 4eef_G F-HB80.4, designed hema 96.4 0.0013 4.4E-08 49.5 2.2 43 6-54 21-66 (74)
57 2xag_B REST corepressor 1; ami 96.2 0.003 1E-07 62.1 4.2 50 4-60 379-428 (482)
58 4a69_C Nuclear receptor corepr 95.9 0.0054 1.8E-07 47.7 3.5 42 5-53 43-84 (94)
59 2y9y_A Imitation switch protei 95.9 0.0038 1.3E-07 59.6 3.3 60 4-63 227-295 (374)
60 2c6y_A Forkhead box protein K2 94.9 0.084 2.9E-06 42.3 7.4 60 107-170 14-77 (111)
61 2lr8_A CAsp8-associated protei 93.4 0.0071 2.4E-07 44.9 0.0 56 3-65 12-69 (70)
62 2a07_F Forkhead box protein P2 94.4 0.11 3.8E-06 40.4 6.7 58 109-170 3-64 (93)
63 1ug2_A 2610100B20RIK gene prod 93.5 0.055 1.9E-06 42.3 3.5 53 2-60 30-84 (95)
64 2hfh_A Genesis, HFH-2; HNF-3 h 93.5 0.2 6.8E-06 40.0 6.8 58 109-170 3-64 (109)
65 1vtn_C HNF-3/FORK head DNA-rec 93.4 0.15 5.2E-06 40.2 6.0 58 109-170 3-64 (102)
66 2hdc_A Protein (transcription 93.0 0.16 5.6E-06 39.7 5.6 49 110-159 3-55 (97)
67 4b4c_A Chromodomain-helicase-D 93.0 0.063 2.2E-06 46.0 3.5 51 4-58 6-58 (211)
68 1kq8_A HFH-1, hepatocyte nucle 92.3 0.15 5.1E-06 40.1 4.5 57 110-170 3-63 (100)
69 3g73_A Forkhead box protein M1 92.1 0.31 1.1E-05 40.6 6.4 64 103-170 12-80 (142)
70 1irz_A ARR10-B; helix-turn-hel 91.8 0.23 7.7E-06 36.2 4.6 52 2-57 4-60 (64)
71 3bpy_A FORK head domain, forkh 91.5 0.52 1.8E-05 35.8 6.6 59 109-171 5-72 (85)
72 1ign_A Protein (RAP1); RAP1,ye 90.9 0.13 4.4E-06 46.5 3.1 50 5-60 94-200 (246)
73 3l2c_A Forkhead box protein O4 90.3 0.7 2.4E-05 36.8 6.6 59 109-171 24-91 (110)
74 3coa_C Forkhead box protein O1 90.2 0.65 2.2E-05 37.5 6.3 57 110-170 12-77 (117)
75 2xb0_X Chromo domain-containin 86.0 0.87 3E-05 41.5 5.1 53 4-60 2-56 (270)
76 1e17_A AFX; DNA binding domain 82.6 1.6 5.4E-05 36.7 4.9 58 110-171 41-107 (150)
77 2xag_B REST corepressor 1; ami 73.4 0.69 2.4E-05 45.5 0.0 41 6-53 190-230 (482)
78 1ofc_X ISWI protein; nuclear p 67.2 5.9 0.0002 36.7 4.8 42 6-53 111-152 (304)
79 1qgp_A Protein (double strande 65.8 9.2 0.00031 27.8 4.8 58 114-178 15-75 (77)
80 1r7j_A Conserved hypothetical 61.4 13 0.00045 27.9 5.1 57 113-178 5-61 (95)
81 2kpm_A Uncharacterized protein 57.6 11 0.00039 29.6 4.2 33 112-144 20-53 (105)
82 1sfu_A 34L protein; protein/Z- 51.6 20 0.0007 26.6 4.5 52 114-172 13-64 (75)
83 1qbj_A Protein (double-strande 50.4 37 0.0013 24.9 5.9 59 115-180 12-73 (81)
84 1psm_A SPAM-H1; polymorphic an 50.0 1.2 4E-05 29.0 -2.2 23 224-246 12-34 (38)
85 1y0u_A Arsenical resistance op 46.8 42 0.0014 24.2 5.7 29 151-179 57-85 (96)
86 2kzv_A Uncharacterized protein 46.4 23 0.00079 27.0 4.2 47 113-159 8-58 (92)
87 2lnb_A Z-DNA-binding protein 1 43.5 38 0.0013 25.5 4.9 55 114-177 20-75 (80)
88 3fbl_A Putative uncharacterize 43.0 20 0.0007 26.2 3.2 29 116-144 51-82 (82)
89 1tbx_A ORF F-93, hypothetical 41.6 70 0.0024 22.9 6.2 51 115-171 10-60 (99)
90 1ldd_A APC2WHB, anaphase promo 37.9 18 0.00062 26.7 2.3 26 152-177 48-74 (74)
91 3jth_A Transcription activator 31.4 1.1E+02 0.0037 21.9 5.8 48 123-178 30-81 (98)
92 1k4u_P Phagocyte NADPH oxidase 30.7 15 0.00051 23.2 0.7 9 256-264 13-21 (32)
93 1uxc_A FRUR (1-57), fructose r 30.6 24 0.00084 24.7 2.0 39 123-161 4-45 (65)
94 1p6r_A Penicillinase repressor 30.4 1.3E+02 0.0046 20.7 6.0 52 114-171 10-61 (82)
95 2heo_A Z-DNA binding protein 1 29.8 70 0.0024 22.1 4.3 54 114-176 11-65 (67)
96 2x4h_A Hypothetical protein SS 29.1 78 0.0027 23.9 4.9 56 115-177 15-71 (139)
97 3cuo_A Uncharacterized HTH-typ 26.6 79 0.0027 22.2 4.2 39 126-171 34-72 (99)
98 2jt1_A PEFI protein; solution 25.6 1.4E+02 0.0048 21.6 5.4 22 152-173 39-60 (77)
99 1oyi_A Double-stranded RNA-bin 23.4 59 0.002 24.3 3.0 49 116-172 17-65 (82)
100 3tdu_C Cullin-1, CUL-1; E2:E3, 20.5 1E+02 0.0036 22.5 3.8 29 113-141 27-55 (77)
No 1
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=99.88 E-value=3.7e-23 Score=161.83 Aligned_cols=74 Identities=28% Similarity=0.429 Sum_probs=67.2
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeecc-----ccccCCcc
Q 024081 107 ARSSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQN-----CFKVKEDA 180 (272)
Q Consensus 107 ~~~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK~-----sykl~~~~ 180 (272)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|+++++|+.+|+.+|++||++|.|+|++| +|+|++..
T Consensus 3 ~~~~hP~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~Kg~GasGsfkl~~~~ 81 (90)
T 1hst_A 3 RSASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKSD 81 (90)
T ss_dssp ---CCCCHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEECCSSCCCEEEECC--
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccCchhHHHHHHHHHHHHHHcCCeeeecCCCccceeecCCCc
Confidence 456899999999999999999999999999999999999977899999999999999999999998 99998654
No 2
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=99.88 E-value=5.3e-23 Score=160.16 Aligned_cols=74 Identities=19% Similarity=0.415 Sum_probs=68.8
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCC----CccHHHHHHHHHHhhhccCceeeecc---ccccCCc
Q 024081 107 ARSSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLEV----PPNFRRLLSSRLRRLVAQEKLEKVQN---CFKVKED 179 (272)
Q Consensus 107 ~~~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v----~~nf~~~L~~~LKrlV~~GkLvkvK~---sykl~~~ 179 (272)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|++ |++|+.+|+.+|++||++|+|+|++| +|||++.
T Consensus 3 ~~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KgasGsfkl~~k 82 (88)
T 1uss_A 3 SSPSSLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKGPSGIIKLNKK 82 (88)
T ss_dssp TCCSSCCHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSSTTSSCBEECCS
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEeccCCCCceecCcc
Confidence 4568999999999999999999999999999999999965 68999999999999999999999999 9999764
Q ss_pred c
Q 024081 180 A 180 (272)
Q Consensus 180 ~ 180 (272)
.
T Consensus 83 ~ 83 (88)
T 1uss_A 83 K 83 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.88 E-value=6.8e-23 Score=156.02 Aligned_cols=70 Identities=26% Similarity=0.481 Sum_probs=65.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCC--C-ccHHHHHHHHHHhhhccCceeeec---cccccCC
Q 024081 109 SSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLEV--P-PNFRRLLSSRLRRLVAQEKLEKVQ---NCFKVKE 178 (272)
Q Consensus 109 ~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v--~-~nf~~~L~~~LKrlV~~GkLvkvK---~sykl~~ 178 (272)
.+||+|.+||+|||.+|+||+|||++||++||+++|++ | ++|+.+|+.+|+++|++|+|+|+| |+|||++
T Consensus 2 ~~hP~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~KGasgsfkl~~ 77 (78)
T 1uhm_A 2 ASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAK 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEECCCTTSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCcceecCC
Confidence 47999999999999999999999999999999999965 5 899999999999999999999976 5999975
No 4
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.86 E-value=2e-22 Score=158.55 Aligned_cols=73 Identities=25% Similarity=0.466 Sum_probs=67.6
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCC--C-ccHHHHHHHHHHhhhccCceeeec---cccccCCc
Q 024081 107 ARSSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLEV--P-PNFRRLLSSRLRRLVAQEKLEKVQ---NCFKVKED 179 (272)
Q Consensus 107 ~~~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v--~-~nf~~~L~~~LKrlV~~GkLvkvK---~sykl~~~ 179 (272)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|++ | ++|+.+|+.+|++||++|.|+|++ |+|+|++.
T Consensus 3 k~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KGasgsfKL~~k 81 (93)
T 1ust_A 3 EEASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKK 81 (93)
T ss_dssp CSSCCCCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTCTTSEEEECSC
T ss_pred CCCCCCCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCceeeCCCC
Confidence 4568999999999999999999999999999999999964 5 899999999999999999999976 69999764
No 5
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-22 Score=155.90 Aligned_cols=74 Identities=30% Similarity=0.412 Sum_probs=68.5
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcC-C-CccHHHHHHHHHHhhhccCceeeecc-----ccccCCc
Q 024081 107 ARSSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLE-V-PPNFRRLLSSRLRRLVAQEKLEKVQN-----CFKVKED 179 (272)
Q Consensus 107 ~~~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-v-~~nf~~~L~~~LKrlV~~GkLvkvK~-----sykl~~~ 179 (272)
.+.+||+|.+||+|||.+|+||+|||++||++||+++|. + +++|+.+|+.+|+++|++|.|+|++| +|||++.
T Consensus 5 ~~~~hp~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~~~~~~~~~lk~aLk~~v~~G~l~q~Kg~GasGsfkl~~~ 84 (88)
T 2rqp_A 5 ASSPRPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQVKGKGASGSFVVVQK 84 (88)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTHHHHTTTTTHHHHHHHHHHHHTTCCSSCSSTTTSSCCTTT
T ss_pred CCCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHhcCcEEeecCCCCcceeecccc
Confidence 456899999999999999999999999999999999997 4 57899999999999999999999998 9999864
Q ss_pred c
Q 024081 180 A 180 (272)
Q Consensus 180 ~ 180 (272)
.
T Consensus 85 ~ 85 (88)
T 2rqp_A 85 S 85 (88)
T ss_dssp T
T ss_pred c
Confidence 3
No 6
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=99.79 E-value=7.2e-21 Score=143.27 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=63.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhh-cCCCccHHHHHHHHHHhhhccCceeeecc-----ccccC
Q 024081 109 SSAPKYNALIFEAISALKEPNGSDVSAILSYIEQR-LEVPPNFRRLLSSRLRRLVAQEKLEKVQN-----CFKVK 177 (272)
Q Consensus 109 ~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~-y~v~~nf~~~L~~~LKrlV~~GkLvkvK~-----sykl~ 177 (272)
++||+|.+||+|||.+|+||+|||++||++||+++ |.++ +++.+|+.+|+++|++|.|+|++| +|||+
T Consensus 1 ~~hP~y~~mI~~AI~alker~GsS~~AI~Kyi~~~~~~~~-~~~~~l~~aLk~~v~~G~l~~~kg~gasGsfkl~ 74 (75)
T 1ghc_A 1 MAGPSVTELITKAVSASKERKGLSLAALKKALAAGGYDVE-KNNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLS 74 (75)
T ss_dssp CCSSSHHHHHHHHHHHCSSSSCCTTSSGGGSSSSSSCCSS-SSHHHHHHHTTTHHHHTSSCCCCCSTTSCCCCSC
T ss_pred CCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHccCCch-hHHHHHHHHHHHHHhcCCeEeccCCCCccccccC
Confidence 36999999999999999999999999999999999 6664 679999999999999999999998 99986
No 7
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=3.9e-19 Score=130.33 Aligned_cols=54 Identities=26% Similarity=0.434 Sum_probs=50.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
+.+++||+||++.|++||++||. +|++|+.+|.| |.+||+||||||||||.+..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f---~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF---QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC---CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC---ccCcccchHHHHHHHHHhcc
Confidence 67999999999999999999999 99999998755 89999999999999998864
No 8
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.8e-20 Score=142.17 Aligned_cols=68 Identities=29% Similarity=0.401 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhc-CCCccHHHHHHHHHHhhhccCceeeecc-----ccccCCc
Q 024081 112 PKYNALIFEAISALKEPNGSDVSAILSYIEQRL-EVPPNFRRLLSSRLRRLVAQEKLEKVQN-----CFKVKED 179 (272)
Q Consensus 112 p~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y-~v~~nf~~~L~~~LKrlV~~GkLvkvK~-----sykl~~~ 179 (272)
++|.+||+|||.+|+||+|||++||++||+++| ..+++|+.+|+.+||++|++|+|+|+|| +|||++.
T Consensus 6 ~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~~~~~~~~~~lk~aLK~~v~~G~Lvq~Kg~GasGsfKl~~k 79 (83)
T 2lso_A 6 GKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRK 79 (83)
Confidence 689999999999999999999999999999998 4578999999999999999999999998 9999764
No 9
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.71 E-value=5e-18 Score=136.34 Aligned_cols=58 Identities=33% Similarity=0.584 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCch
Q 024081 2 GNPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSAP 61 (272)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (272)
++++++||+|||+.|++||++||.|+|+.|+..+ | .+|.+||++|||||||||++...
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~-~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCA-F-EDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSS-S-SSTTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-c-cccCCCCHHHHHHHHHHHHhhcc
Confidence 5789999999999999999999999999999964 3 36799999999999999998763
No 10
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.68 E-value=1.5e-17 Score=136.72 Aligned_cols=57 Identities=32% Similarity=0.631 Sum_probs=51.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 2 GNPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
++++++||.|||+.|++||++||.|+|+.|+..+ | .+|.+||++|||||||||++..
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~-~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRA-F-ENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHH-H-SSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHh-c-cccCCCCHHHHHHHHHHHHhhc
Confidence 5789999999999999999999999999999964 3 2579999999999999999765
No 11
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.67 E-value=1.6e-17 Score=136.37 Aligned_cols=57 Identities=30% Similarity=0.525 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 2 GNPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
++++++||.|||+.|++||++||.|+|+.|+.++.| .|.+||++|||||||||++..
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~--~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD--NADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS--CCSSCCSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc--ccCCCCHHHHHHHHHHHHhhh
Confidence 578999999999999999999999999999998654 579999999999999999864
No 12
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.66 E-value=2.4e-17 Score=127.21 Aligned_cols=53 Identities=34% Similarity=0.660 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 6 QKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 6 ~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
++||+|||+.|++||++||.|+|+.|++++ | .+|++||++|||||||||++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~-~-~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRA-F-DNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHH-C-TTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhh-c-cccCCCCHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999974 3 2589999999999999999865
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.66 E-value=4.3e-17 Score=119.79 Aligned_cols=54 Identities=41% Similarity=0.780 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
.+|++||+|||+.|+.+|++||.|+|..|+..+. |.+||++||+|||+||.+.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP----FVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC----CSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC----CCCCCHHHHHHHHHHHhccC
Confidence 4688999999999999999999999999998643 46999999999999998864
No 14
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.57 E-value=1.3e-15 Score=107.08 Aligned_cols=52 Identities=38% Similarity=0.731 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 4 PKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
++++||+|||+.|+.+|++||.|+|..|..... |.+||++||++||+|+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK----FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC----CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC----CCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999999999999532 2389999999999999874
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.54 E-value=3.8e-15 Score=110.01 Aligned_cols=56 Identities=36% Similarity=0.668 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCch
Q 024081 2 GNPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSAP 61 (272)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (272)
++++++||+|||+.|+.+|++||.|+|..|+.... |.+||++||++||+|++++..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK----FNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC----CSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC----cCCCCHHHHHHHHHHHcCCCC
Confidence 57889999999999999999999999999999522 239999999999999998763
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.44 E-value=6.9e-14 Score=97.55 Aligned_cols=50 Identities=32% Similarity=0.710 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 4 PKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
.+.+||+|||+.|+.+|.+||.++|..|.. .|++||+.||++||.+++.+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN------YLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHH------TSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH------HcCCCCHHHHHHHHHHHcCc
Confidence 478999999999999999999999999998 36899999999999998765
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.41 E-value=2.1e-13 Score=95.22 Aligned_cols=50 Identities=30% Similarity=0.516 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 4 PKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
.+.+||+|||+.|+.+|.+||.++|..|.. +|++||..||++||.+++.+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHT------TSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHH------HcCCCCHHHHHHHHHHHcCc
Confidence 478999999999999999999999999998 36899999999999999875
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=1.8e-13 Score=98.13 Aligned_cols=53 Identities=30% Similarity=0.537 Sum_probs=48.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 2 GNPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
+..+.+||+|||+.|+.+|.+||.++|..|.. +|++||..||++||.+++.+.
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS------HFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH------HCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH------HccCCCHHHHHHHHHHHcCCc
Confidence 35689999999999999999999999999998 368999999999999998875
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=96.46 Aligned_cols=54 Identities=26% Similarity=0.486 Sum_probs=48.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCch
Q 024081 2 GNPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSAP 61 (272)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (272)
+..+++||+|||+.|+.+|.+||.++|..|.. +|++||+.||++||.+++.+..
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS------LLHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH------HSTTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH------HhcCCCHHHHHHHHHHHcCCcc
Confidence 34678999999999999999999999999998 3679999999999999988753
No 20
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.30 E-value=1.4e-12 Score=93.87 Aligned_cols=53 Identities=21% Similarity=0.455 Sum_probs=47.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 2 GNPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
...+.+||+|||..|+++|++||.++|..|.. ++++||+.||++||.+++...
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVAN------QMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHH------HHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHH------HhCCCCHHHHHHHHHHHccCC
Confidence 35688999999999999999999999999998 368999999999999987654
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.27 E-value=2.1e-12 Score=92.58 Aligned_cols=48 Identities=23% Similarity=0.482 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCC-CCCHHhHHHHHHhhc
Q 024081 4 PKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLF-SRSNIDLKDKWRNMS 57 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~-~RT~vdLKDKWRnl~ 57 (272)
.+.+||+|||..|+++|++||.++|..|.. ++. +||+.||++||.++.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~------~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIAD------YVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHH------HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH------HHCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999999998 357 899999999999875
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.15 E-value=2.1e-11 Score=91.84 Aligned_cols=49 Identities=39% Similarity=0.506 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
..+.+||+|||+.|+.+|.+||. +|+.|.+ +| +||..+||+||+.|.+.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~------~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIGA------AL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH------HH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH------Hh-CCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999 6999998 36 99999999999988764
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.12 E-value=5.5e-11 Score=93.41 Aligned_cols=51 Identities=27% Similarity=0.472 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
-.+++||+|||+.|+.+|++||.++|..|.. +|++||+.||++||++++.+
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p 52 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLNP 52 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHT------TSTTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhh------hhcCCCHHHHHHHHHhccCC
Confidence 3688999999999999999999999999998 36899999999999998754
No 24
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.11 E-value=2.9e-11 Score=89.82 Aligned_cols=51 Identities=31% Similarity=0.546 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
..+.+||.|||+.|+.+|.+||. +|..|.. +|++||..||+++|.++++..
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~------~~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISK------LIGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH------HHSSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999 9999998 468999999999999987654
No 25
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.5e-11 Score=89.79 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC-----CCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGT-----GKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~-----GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
..+.+||.|||+.|+++|.+||. ++|..|.. +|.+||..||++||.+++...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~------~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD------ELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH------HHSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH------HhCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999996 79999998 368999999999998887664
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.10 E-value=9.3e-11 Score=95.96 Aligned_cols=105 Identities=26% Similarity=0.390 Sum_probs=74.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCchhhhcccCCCCCCCCCCCCCCCCC
Q 024081 5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSAPREKSRTLKPKAGSDAPAVPLSTP 84 (272)
Q Consensus 5 r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~r~k~~~~~~~~~~~~~~~~~~~~ 84 (272)
|++||+|||+.|+.+|.+||.++|..|.. ++++||+.||++||+|.+.+.. .+++-+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~p~~--------~~~~Wt--------- 58 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITS------FLPNRSPKQCRERWFNHLDPAV--------VKHAWT--------- 58 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTT------SCTTSCHHHHHHHHHHHTSTTC--------CCSCCC---------
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHH------HHCCCCHHHHHHHHhhccCccc--------cCCCCC---------
Confidence 68999999999999999999999999998 3689999999999999886532 112110
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhcc
Q 024081 85 QTSALPAAVPIDASADPITDESARSSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQ 164 (272)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~ 164 (272)
+-=+.++++++..+ |..-..|++++..+- +...+.+....|++-+..
T Consensus 59 ---------------------------~eEd~~L~~~~~~~----G~~W~~Ia~~l~gRt--~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 59 ---------------------------PEEDETIFRNYLKL----GSKWSVIAKLIPGRT--DNAIKNRWNSSISKRIST 105 (131)
T ss_dssp ---------------------------HHHHHHHHHHHHHS----CSCHHHHTTTSTTCC--HHHHHHHHHHTTGGGCCC
T ss_pred ---------------------------HHHHHHHHHHHHHH----CcCHHHHHHHcCCCC--HHHHHHHHHHHHHHHhhc
Confidence 01267788888775 456888887765332 233444555555555444
Q ss_pred C
Q 024081 165 E 165 (272)
Q Consensus 165 G 165 (272)
+
T Consensus 106 ~ 106 (131)
T 3zqc_A 106 N 106 (131)
T ss_dssp C
T ss_pred C
Confidence 4
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.10 E-value=5.3e-11 Score=94.27 Aligned_cols=85 Identities=22% Similarity=0.418 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCchhhhcccCCCCCCCCCCCCCCCCC
Q 024081 5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSAPREKSRTLKPKAGSDAPAVPLSTP 84 (272)
Q Consensus 5 r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~r~k~~~~~~~~~~~~~~~~~~~~ 84 (272)
|++||+|||+.|+.+|++||.++|..|.. ++++||+.||++||.|++.+.. .+++-+ +
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~p~i--------~~~~WT-~------- 58 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ------LMITRNPRQCRERWNNYINPAL--------RTDPWS-P------- 58 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH------HTTTSCHHHHHHHHHHHSSSCC--------TTCCCC-H-------
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh------hcCCCCHHHHHHHHHHHHcccc--------cccccC-H-------
Confidence 57999999999999999999999999998 3689999999999999887542 122210 0
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhh
Q 024081 85 QTSALPAAVPIDASADPITDESARSSAPKYNALIFEAISALKEPNGSDVSAILSYIEQR 143 (272)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~ 143 (272)
-=+.++++++..+ |..-..|++|+..+
T Consensus 59 ----------------------------eEd~~L~~~~~~~----G~~W~~Ia~~l~gR 85 (107)
T 2k9n_A 59 ----------------------------EEDMLLDQKYAEY----GPKWNKISKFLKNR 85 (107)
T ss_dssp ----------------------------HHHHHHHHHHHHT----CSCHHHHHHHHSSS
T ss_pred ----------------------------HHHHHHHHHHHHh----CcCHHHHHHHCCCC
Confidence 1167788888876 56899999998544
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.05 E-value=1.5e-10 Score=94.31 Aligned_cols=52 Identities=37% Similarity=0.668 Sum_probs=46.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 2 GNPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
+.++++||+|||+.|+.+|++||. +|..|.. .+++||+.||++||+|.+.+.
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~p~ 59 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA------TFPNRNARQCRDRWKNYLAPS 59 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH------TCTTCCHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHhhhcccc
Confidence 457899999999999999999999 9999998 368999999999999988643
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.04 E-value=1.5e-10 Score=94.17 Aligned_cols=51 Identities=27% Similarity=0.534 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
..+++||+|||+.|+.+|++||.++|..|.. +|++||+.||++||.+++.+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p 75 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK------HLKGRIGKQCRERWHNHLNP 75 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHH------HSSSCCHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH------HhcCCcHHHHHHHHHHhccc
Confidence 4678999999999999999999999999998 36899999999999998764
No 30
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=6e-11 Score=86.56 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
..+.+||.|||+.|+.+|++||. +|..|.. |.+||..||++||.+++.+.
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-------~~gRt~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-------IIGRTAAQCLEHYEFLLDKA 56 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-------HHSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-------ccCcCHHHHHHHHHHHhChH
Confidence 46789999999999999999999 9999998 25899999999999998876
No 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=88.85 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhcc
Q 024081 4 PKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSV 58 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~ 58 (272)
.+.+||.|||..|+++|++|| ++|..|.. ++.+||..||+++|.++..
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~------~v~~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSE------HVGSRTQDECILHFLRLPI 64 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHH------HHSSCCHHHHHHHHTTSCC
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHH------HcCCCCHHHHHHHHHHhcc
Confidence 468999999999999999999 89999998 3579999999999998843
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.01 E-value=3e-10 Score=89.14 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
..+.+||+|||..|+.+|.+||. +|..|.. +|++||..+|++||+++++.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT------TCTTCCHHHHHHHHHHHTC-
T ss_pred ccccCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999997 9999997 47899999999999998764
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.94 E-value=5.5e-10 Score=90.90 Aligned_cols=50 Identities=30% Similarity=0.654 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
..+.+||+|||+.|+.+|.+||. +|..|.. +|++||..+|++||+++.+.
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGR-QWAIIAK------FFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT------TSTTCCHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHh
Confidence 35789999999999999999997 9999998 37899999999999998765
No 34
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.93 E-value=4.3e-10 Score=89.01 Aligned_cols=51 Identities=27% Similarity=0.609 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
..+.+||+|||..|+.+|.+||. +|..|.. +|++||..+|++||.++.+..
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGP-KWNKISK------FLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHH------HHSSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhCc-CHHHHHH------HCCCCCHHHHHHHHHHHHhhH
Confidence 35789999999999999999998 9999998 368999999999999987653
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.92 E-value=1e-09 Score=89.27 Aligned_cols=50 Identities=24% Similarity=0.563 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
..+.+||+|||..|+.+|.+||. +|..|.. +|++||..+|+++|+++++.
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG------GSTTCCHHHHHHHHHTTTTC
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHH------HCCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999998 9999998 47899999999999998864
No 36
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.91 E-value=1e-09 Score=89.80 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
..+.+||+|||+.|+.+|.+||. +|..|.. +|++||..+|++||.++++..
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGS-KWSVIAK------LIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCS-CHHHHTT------TSTTCCHHHHHHHHHHTTGGG
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999997 9999998 478999999999999998875
No 37
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.88 E-value=9.4e-10 Score=82.75 Aligned_cols=50 Identities=18% Similarity=0.402 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhC---CCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 4 PKQKWTAEEEEALRAGVAKHG---TGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG---~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
.+.+||.||+..|+.+|.+|| +.+|..|.. ++++||..+|++||.+|+..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~------~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR------CVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG------GCSSSCHHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH------HcCCCCHHHHHHHHHHHHHc
Confidence 467899999999999999999 459999998 47899999999999999764
No 38
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.39 E-value=2.2e-10 Score=88.70 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
..+.+||.|||+.|+.+|.+||. +|..|.. +|++||..+|+++|.++++..
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~------~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR------MVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 35789999999999999999999 9999998 478999999999999988764
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.86 E-value=2.1e-09 Score=90.20 Aligned_cols=51 Identities=27% Similarity=0.472 Sum_probs=46.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
..+.+||+|||+.|+.+|.+||.++|..|.. +|++||+.+|++||.+++.+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH------TSTTCCHHHHHHHHHHTTCT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHH------HcCCCCHHHHHHHHHHHhCc
Confidence 3578999999999999999999989999998 46899999999999998754
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.74 E-value=8.3e-09 Score=86.59 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccC
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~ 59 (272)
..+.+||+|||..|+.+|.+||. +|..|.. +|++||..+|+++|..+++.
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~------~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT------TSTTCCHHHHHHHHHTTTCC
T ss_pred ccccCCChHHHHHHHHHHHHHCC-CHHHHHH------HCCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999998 9999998 47899999999999998765
No 41
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.66 E-value=9.3e-09 Score=80.66 Aligned_cols=61 Identities=20% Similarity=0.386 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhC---CCCccccccccccCccCCCCCHHhHHHHHHhhccCc-hhhhcccCCC
Q 024081 4 PKQKWTAEEEEALRAGVAKHG---TGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA-PREKSRTLKP 70 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG---~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~-~r~k~~~~~~ 70 (272)
.+.+||.||+..|..++.+|| +.+|..|.. .+++||..+|+++|.+|.... ..+.+..|.+
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~------~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P 71 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVAR------AVEGRTPEEVKKHYEILVEDIKYIESGKVPFP 71 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH------HSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 467899999999999999998 457999998 378999999999999997664 4455555544
No 42
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.53 E-value=4.9e-08 Score=88.25 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=45.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCC-----ccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGK-----WKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~Gk-----W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
..+.+||+|||+.|++.|++||..+ |..|.+ +|+|||..+||+||+++++..
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk------~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH------YVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT------TSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH------HcCCCCHHHHHHHHHHHHhhh
Confidence 3578999999999999999999853 999998 489999999999999988775
No 43
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.34 E-value=2.9e-07 Score=68.86 Aligned_cols=61 Identities=25% Similarity=0.435 Sum_probs=50.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---CCccccccccccCccCCCCCHHhHHHHHHhhccCchhhhcccCCC
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGT---GKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSAPREKSRTLKP 70 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~---GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~r~k~~~~~~ 70 (272)
.....||.||+..|..++.+|+. ..|..|... + +||..||+.+|..|......+.++.|++
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~------l-gRt~~eV~~~y~~L~~d~~~~~G~vp~P 69 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE------L-GRSVTDVTTKAKQLKDSVTCSPGMVSGP 69 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH------H-TSCHHHHHHHHHHHHHSCCCCSCCCSCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH------h-CCCHHHHHHHHHHHHHhcCccCCCCCCC
Confidence 34678999999999999999984 579999983 3 8999999999999977765455555544
No 44
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=7.3e-07 Score=64.20 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhcc
Q 024081 4 PKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSV 58 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~ 58 (272)
...+||+||+..+.+++.+||. +|..|.. ++++||..||...|-...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~------~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK-NFGLIAS------YLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT-CHHHHHH------HCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHhcC
Confidence 4578999999999999999996 9999996 4789999999999976554
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.89 E-value=7.5e-06 Score=64.23 Aligned_cols=54 Identities=19% Similarity=0.301 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCch
Q 024081 6 QKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSAP 61 (272)
Q Consensus 6 ~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~ 61 (272)
.+||.||+..|.+.+++||. +|..|..-+.+.. +.+||-.|||+||-.+++.-.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~-~~~Rt~EdLK~RyY~v~~~l~ 84 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICAKLA 84 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTT-SCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCC-CCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999 9999999654432 358999999999988877653
No 46
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.73 E-value=3.2e-05 Score=66.98 Aligned_cols=55 Identities=20% Similarity=0.367 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCccccccccccC--c------cCCCCCHHhHHHHHHhhccC
Q 024081 5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFN--P------FLFSRSNIDLKDKWRNMSVS 59 (272)
Q Consensus 5 r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~--~------~l~~RT~vdLKDKWRnl~~~ 59 (272)
...||.+||..|+.||.+||-|+|..|..||.++ + +...++.+.|..|-..|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 4469999999999999999999999999999853 2 12456788899997655543
No 47
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.71 E-value=2.3e-05 Score=70.43 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
+...+||+||...++.|+.+||. +|..|.+ ++.+||..+|+..|.+..+..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk------~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD------VIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH------HHSSCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHh
Confidence 34568999999999999999998 9999998 378999999999999888764
No 48
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.51 E-value=6.4e-05 Score=56.47 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---CCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 5 KQKWTAEEEEALRAGVAKHGT---GKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 5 r~~WT~EEe~~L~~GV~KyG~---GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
-..||.+|+..|..++..|+. +.|..|.. .+.+||..+|+.+|..|.+..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~------~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAA------AVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH------HTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHH------HcCCCCHHHHHHHHHHHHhcc
Confidence 357999999999999999975 78999998 367999999999999986553
No 49
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.27 E-value=0.0001 Score=67.64 Aligned_cols=32 Identities=47% Similarity=0.857 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHhhCCCCccccccccccC
Q 024081 7 KWTAEEEEALRAGVAKHGTGKWKNIQRDPEFN 38 (272)
Q Consensus 7 ~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~ 38 (272)
.|+.+||..|+.||-+||-|+|..|..||.+.
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~L~ 201 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLG 201 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCTTTC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcCcccC
Confidence 39999999999999999999999999999764
No 50
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.27 E-value=0.00019 Score=51.47 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCCCccccccccccCccCCCCCHHhHHHHHHhhcc
Q 024081 5 KQKWTAEEEEALRAGVAKH--------GTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSV 58 (272)
Q Consensus 5 r~~WT~EEe~~L~~GV~Ky--------G~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~ 58 (272)
|.+||.|||..|++-|.+| |.--|..|... .++.+|-..++|||+.-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~-----~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS-----SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS-----CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh-----HCCCCCHHHHHHHHHHHcc
Confidence 7899999999999999999 76789988872 2589999999999987653
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.98 E-value=0.00051 Score=53.81 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 6 QKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 6 ~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
..||.||+..|.+.+++|+. +|--|..-+.+.. +..||--|||+||-.++..-
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~-~~~RtvEdLK~RYY~V~~~l 83 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTT-SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCC-CCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999 9999999665532 35899999999997776654
No 52
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.95 E-value=0.00084 Score=48.46 Aligned_cols=46 Identities=17% Similarity=0.367 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhh
Q 024081 5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNM 56 (272)
Q Consensus 5 r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl 56 (272)
...||+||-....+|+.+||. .|..|..+ ++++||..||..-|-.-
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGK-NFFRIRKE-----LLPNKETGELITFYYYW 54 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCS-CHHHHHHH-----SCTTSCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCcHHHHHHHHhcc
Confidence 468999999999999999999 99999974 47899999999876543
No 53
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.88 E-value=0.00042 Score=64.57 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---CCccccccc------cccCccCCCCCHHhHHHHHHhhccCc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGT---GKWKNIQRD------PEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~---GkW~~I~~~------~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
++...||.+||..|+-++.+||. |.|..|..+ +.|+-||..||+.+|..|-..|.+.-
T Consensus 210 ~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 210 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 34578999999999999999999 999999632 35666789999999999999988764
No 54
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.65 E-value=0.0022 Score=47.21 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhh
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNM 56 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl 56 (272)
.....||+||-.....|+.+||. +|..|..+ ++++||..||..-|-.-
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQD-----FLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT-----TCSSSCHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCCHHHHHHHHHhh
Confidence 45678999999999999999999 89999974 47899999999887643
No 55
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.61 E-value=0.00038 Score=52.60 Aligned_cols=55 Identities=25% Similarity=0.360 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhC----C-----CCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 4 PKQKWTAEEEEALRAGVAKHG----T-----GKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG----~-----GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
....||.+|...|+.....+. . ..|..|... +...-..||+.||++||.||.+.-
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~--m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSK--MREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH--HHHcCCCCCHHHHHHHHHHHHHHH
Confidence 357899999999999987532 1 268888773 111113799999999999998864
No 56
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.41 E-value=0.0013 Score=49.55 Aligned_cols=43 Identities=16% Similarity=0.501 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCC---CccccccccccCccCCCCCHHhHHHHHH
Q 024081 6 QKWTAEEEEALRAGVAKHGTG---KWKNIQRDPEFNPFLFSRSNIDLKDKWR 54 (272)
Q Consensus 6 ~~WT~EEe~~L~~GV~KyG~G---kW~~I~~~~~f~~~l~~RT~vdLKDKWR 54 (272)
..||.+|+.+|..++.+|+.| .|.+|.. .+++||..+|+..|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~------~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQ------YVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG------GSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH------HcCCCCHHHHHHHHH
Confidence 479999999999999999765 8999998 478999999998764
No 57
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.22 E-value=0.003 Score=62.14 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 4 PKQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
...+||.||-..++.|+.+||. .|..|.. ++..||..||+.-|.+..+..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~------~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISD------VIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHH------HHSSCCHHHHHHHHHHTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HhCCCCHHHHHHHHHHHHHHh
Confidence 3578999999999999999999 9999998 367999999999998766653
No 58
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=95.91 E-value=0.0054 Score=47.66 Aligned_cols=42 Identities=19% Similarity=0.357 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHH
Q 024081 5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKW 53 (272)
Q Consensus 5 r~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKW 53 (272)
...||+||-+.+.+++..||. +|..|.. ++++||..||-.-|
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~------~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIAS------FLERKTVAECVLYY 84 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHH------TCTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHH------HcCCCCHHHHHHHH
Confidence 467999999999999999998 9999965 47999999998765
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.91 E-value=0.0038 Score=59.58 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CCccccccc------cccCccCCCCCHHhHHHHHHhhccCchhh
Q 024081 4 PKQKWTAEEEEALRAGVAKHGT---GKWKNIQRD------PEFNPFLFSRSNIDLKDKWRNMSVSAPRE 63 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG~---GkW~~I~~~------~~f~~~l~~RT~vdLKDKWRnl~~~~~r~ 63 (272)
....||.+||..|+-++.+||. |.|..|..+ +.|+-||..||+..|..|-..|++.-.++
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE 295 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKE 295 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999 999998543 24555689999999999999988765333
No 60
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=94.88 E-value=0.084 Score=42.32 Aligned_cols=60 Identities=17% Similarity=0.231 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcC----CCccHHHHHHHHHHhhhccCceeee
Q 024081 107 ARSSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLE----VPPNFRRLLSSRLRRLVAQEKLEKV 170 (272)
Q Consensus 107 ~~~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----v~~nf~~~L~~~LKrlV~~GkLvkv 170 (272)
..++..+|..||..||.... .+..+..-|..||+++|. -+..++..|++.|- -+.-|++|
T Consensus 14 ~~KPp~SYa~LI~~AI~~sp-~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 77 (111)
T 2c6y_A 14 DSKPPYSYAQLIVQAITMAP-DKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLS---LNRYFIKV 77 (111)
T ss_dssp CCCCSSCHHHHHHHHHHTST-TSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHH---HSTTEEEE
T ss_pred CCCCCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhh---hhhhhccc
Confidence 34455689999999999853 445899999999999982 36777778877764 44566665
No 61
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.43 E-value=0.0071 Score=44.92 Aligned_cols=56 Identities=11% Similarity=0.257 Sum_probs=45.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC--CCccccccccccCccCCCCCHHhHHHHHHhhccCchhhhc
Q 024081 3 NPKQKWTAEEEEALRAGVAKHGT--GKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSAPREKS 65 (272)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~KyG~--GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~~r~k~ 65 (272)
-.-..||.|||..++..+++-|+ -.|..|.. .| +||+.|+++|++.|.+--.+.|+
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~------~L-nks~~QV~~RF~~Lm~Lf~kSk~ 69 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAA------KL-DKNPNQVSERFQQLMKLFEKSKC 69 (70)
Confidence 34467999999999999999997 57888886 35 89999999999999876544443
No 62
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=94.36 E-value=0.11 Score=40.38 Aligned_cols=58 Identities=16% Similarity=0.248 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhc----CCCccHHHHHHHHHHhhhccCceeee
Q 024081 109 SSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRL----EVPPNFRRLLSSRLRRLVAQEKLEKV 170 (272)
Q Consensus 109 ~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y----~v~~nf~~~L~~~LKrlV~~GkLvkv 170 (272)
++..+|..||..||..-. .++.+.+-|.+||+++| .-+..++..+++.|- -++-|++|
T Consensus 3 KPp~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLS---ln~~F~kv 64 (93)
T 2a07_F 3 RPPFTYATLIRQAIMESS-DRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLS---LHKCFVRV 64 (93)
T ss_dssp CCSCCHHHHHHHHHHHST-TSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCTTBCCE
T ss_pred CCCCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCCccccCCCccccccceeee---hhhceeec
Confidence 345689999999999853 45689999999999998 235667777777664 33444444
No 63
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.54 E-value=0.055 Score=42.25 Aligned_cols=53 Identities=15% Similarity=0.337 Sum_probs=44.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC--CCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 2 GNPKQKWTAEEEEALRAGVAKHGT--GKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~KyG~--GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
|-.-..||.|||..++...++-|+ -.|..|.. .|.+|++.++++|++.|.+.-
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~------~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ------QLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH------HHSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHH------HHccCCHHHHHHHHHHHHHHH
Confidence 445567999999999999999987 57888887 367899999999999987643
No 64
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=93.50 E-value=0.2 Score=40.04 Aligned_cols=58 Identities=24% Similarity=0.305 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhc----CCCccHHHHHHHHHHhhhccCceeee
Q 024081 109 SSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRL----EVPPNFRRLLSSRLRRLVAQEKLEKV 170 (272)
Q Consensus 109 ~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y----~v~~nf~~~L~~~LKrlV~~GkLvkv 170 (272)
++..+|..||..||..- ..++.+..-|.+||+++| .-++.++..|+..|- -+.-|++|
T Consensus 3 KPp~SYa~LI~~AI~~s-p~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 64 (109)
T 2hfh_A 3 KPPYSYIALITMAILQS-PQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS---LNDCFVKI 64 (109)
T ss_dssp CCCCCHHHHHHHHHHTC-SSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHH---HHTCCBCC
T ss_pred CCCCCHHHHHHHHHHhC-CCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhh---hhhhhhcC
Confidence 44568999999999874 344579999999999998 346778888877764 33445544
No 65
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=93.43 E-value=0.15 Score=40.19 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhc----CCCccHHHHHHHHHHhhhccCceeee
Q 024081 109 SSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRL----EVPPNFRRLLSSRLRRLVAQEKLEKV 170 (272)
Q Consensus 109 ~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y----~v~~nf~~~L~~~LKrlV~~GkLvkv 170 (272)
++..+|..||..||.... .++.+..-|.+||+++| .-+..++..|++.|- -+.-|++|
T Consensus 3 KPp~SY~~LI~~AI~~sp-~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~kv 64 (102)
T 1vtn_C 3 KPPYSYISLITMAIQQAP-GKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLS---FNDCFVKV 64 (102)
T ss_dssp CCSSCHHHHHHHHHHTST-TSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHH---HCTTEEEE
T ss_pred CcCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhh---hccceEec
Confidence 455689999999999753 34579999999999998 235667777777764 35666665
No 66
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=93.01 E-value=0.16 Score=39.66 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhc----CCCccHHHHHHHHHH
Q 024081 110 SAPKYNALIFEAISALKEPNGSDVSAILSYIEQRL----EVPPNFRRLLSSRLR 159 (272)
Q Consensus 110 shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y----~v~~nf~~~L~~~LK 159 (272)
+..+|..||..||..-. .++.+.+-|.+||+++| .-++.++..|++.|-
T Consensus 3 Pp~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLS 55 (97)
T 2hdc_A 3 PPYSYIALITMAILQSP-QKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS 55 (97)
T ss_dssp CCCCHHHHHHHHHHTCT-TTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC-CCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhh
Confidence 44689999999998743 44679999999999998 225667777777664
No 67
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.98 E-value=0.063 Score=46.04 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCCccccccccccCccCCCCCHHhHHHHHHhhcc
Q 024081 4 PKQKWTAEEEEALRAGVAKHG--TGKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSV 58 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG--~GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~ 58 (272)
+...||..|-..|+.++.+|| .+.|..|..+.+ |.++|..++++=++.+..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~----L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE----LVDKSETDLRRLGELVHN 58 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT----CTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc----cCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999 689999999754 468999999986555443
No 68
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=92.27 E-value=0.15 Score=40.07 Aligned_cols=57 Identities=21% Similarity=0.231 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcC----CCccHHHHHHHHHHhhhccCceeee
Q 024081 110 SAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLE----VPPNFRRLLSSRLRRLVAQEKLEKV 170 (272)
Q Consensus 110 shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----v~~nf~~~L~~~LKrlV~~GkLvkv 170 (272)
+..+|..||..||..-.+ +..+.+-|.+||+++|. -+..++..|++.|- -+.-|++|
T Consensus 3 Pp~SY~~LI~~AI~~sp~-~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~kv 63 (100)
T 1kq8_A 3 PPYSYIALITMAIRDSAG-GRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLS---LNDCFVKV 63 (100)
T ss_dssp ----CHHHHHHHHTTSSS-SCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHH---HHTCCEEC
T ss_pred CCCCHHHHHHHHHHhCCC-CCCcHHHHHHHHHHhCccccCCCCceecccchhee---hhheeeec
Confidence 446799999999998543 45899999999999982 35667777777664 23445554
No 69
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=92.08 E-value=0.31 Score=40.62 Aligned_cols=64 Identities=16% Similarity=0.305 Sum_probs=45.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcC-----CCccHHHHHHHHHHhhhccCceeee
Q 024081 103 TDESARSSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLE-----VPPNFRRLLSSRLRRLVAQEKLEKV 170 (272)
Q Consensus 103 ~~~~~~~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-----v~~nf~~~L~~~LKrlV~~GkLvkv 170 (272)
+.....++.-+|..||..||....+ ++.+...|.+||+++|. -+..++..|++.|- -+.-|+++
T Consensus 12 ~~~~~~KPpySYa~LI~~AI~~sp~-~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNLS---ln~~F~r~ 80 (142)
T 3g73_A 12 QNSVSERPPYSYMAMIQFAINSTER-KRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNLS---LHDMFVRE 80 (142)
T ss_dssp --CTTSCCSSCHHHHHHHHHHTSTT-SEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHHH---HCTTEEEE
T ss_pred CccCCCCCCCCHHHHHHHHHHhCCC-CCcCHHHHHHHHHHhCCCccccCCCCccchhhhhhh---hhhhheec
Confidence 3344455566899999999988443 44899999999999982 46677777877663 44555554
No 70
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=91.79 E-value=0.23 Score=36.23 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=40.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCC--ccccccccccCccCCCCCHHhHHHH---HHhhc
Q 024081 2 GNPKQKWTAEEEEALRAGVAKHGTGK--WKNIQRDPEFNPFLFSRSNIDLKDK---WRNMS 57 (272)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~KyG~Gk--W~~I~~~~~f~~~l~~RT~vdLKDK---WRnl~ 57 (272)
.++|..||+|.-+.++++|+.+|..+ |+.|++. .+ ..+.|..+++.. ||...
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~--M~--v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDL--MN--VDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHH--HC--CTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHH--cC--CCCCCHHHHHHHHHHHHHHH
Confidence 46889999999999999999999532 6788873 22 368899999855 55443
No 71
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=91.47 E-value=0.52 Score=35.84 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcC---C------CccHHHHHHHHHHhhhccCceeeec
Q 024081 109 SSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLE---V------PPNFRRLLSSRLRRLVAQEKLEKVQ 171 (272)
Q Consensus 109 ~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~---v------~~nf~~~L~~~LKrlV~~GkLvkvK 171 (272)
+...+|..||..||....++ ..+.+.|..||+++|. . ...++..|++.|- -+.-|++|.
T Consensus 5 kp~~SY~~LI~~Ai~~sp~~-~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 72 (85)
T 3bpy_A 5 WGNQSYAELISQAIESAPEK-RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 72 (85)
T ss_dssp TBSCCHHHHHHHHHHHSTTS-CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred cCCCCHHHHHHHHHHhCCcC-CccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhcc---HhhhheeCC
Confidence 34468999999999985544 4899999999999982 1 2467777777664 456677664
No 72
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=90.92 E-value=0.13 Score=46.52 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHh-h--------------------------------CC------------------------CC
Q 024081 5 KQKWTAEEEEALRAGVAK-H--------------------------------GT------------------------GK 27 (272)
Q Consensus 5 r~~WT~EEe~~L~~GV~K-y--------------------------------G~------------------------Gk 27 (272)
+.+||.|||-.|...|.+ | |+ +.
T Consensus 94 K~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~ 173 (246)
T 1ign_A 94 KRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREF 173 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCCCCTTH
T ss_pred cCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcchHHH
Confidence 689999999999999988 2 11 36
Q ss_pred ccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 28 WKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 28 W~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
|..|.+ .|++||.+..+||||.+++..
T Consensus 174 fk~ia~------~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 174 FKHFAE------EHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHH------HTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHH------HCCCCChhhHHHHHHHHHhhc
Confidence 888887 368999999999999888755
No 73
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=90.29 E-value=0.7 Score=36.82 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhc---CC------CccHHHHHHHHHHhhhccCceeeec
Q 024081 109 SSAPKYNALIFEAISALKEPNGSDVSAILSYIEQRL---EV------PPNFRRLLSSRLRRLVAQEKLEKVQ 171 (272)
Q Consensus 109 ~shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y---~v------~~nf~~~L~~~LKrlV~~GkLvkvK 171 (272)
+..-+|..||..||....++ ..++..|..||+++| .. ...++..|+..|- -+.-|++|.
T Consensus 24 kPpySY~~LI~~AI~~sp~~-~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 91 (110)
T 3l2c_A 24 WGNQSYAELISQAIESAPEK-RLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 91 (110)
T ss_dssp TBSCCHHHHHHHHHHHSTTS-CBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCCHHHHHHHHHHhCCcc-CcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhcc---HhhhheeCC
Confidence 34468999999999986554 489999999999998 21 2467777877664 456677764
No 74
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=90.16 E-value=0.65 Score=37.46 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcC---C-C-----ccHHHHHHHHHHhhhccCceeee
Q 024081 110 SAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLE---V-P-----PNFRRLLSSRLRRLVAQEKLEKV 170 (272)
Q Consensus 110 shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~---v-~-----~nf~~~L~~~LKrlV~~GkLvkv 170 (272)
+..+|..||..||..- ..+..++.-|..||+++|. . + ..++..|++.|- -+.-|++|
T Consensus 12 Pp~SYa~LI~~AI~~s-p~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLS---ln~~F~Kv 77 (117)
T 3coa_C 12 GNLSYADLITKAIESS-AEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIRV 77 (117)
T ss_dssp BSCCHHHHHHHHHHTS-TTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHH---HCTTEEEE
T ss_pred CCCCHHHHHHHHHHhC-CCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchhee---cchhhccc
Confidence 4568999999999974 3445899999999999982 1 2 456667776663 45667766
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=86.01 E-value=0.87 Score=41.53 Aligned_cols=53 Identities=21% Similarity=0.201 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC--CCccccccccccCccCCCCCHHhHHHHHHhhccCc
Q 024081 4 PKQKWTAEEEEALRAGVAKHGT--GKWKNIQRDPEFNPFLFSRSNIDLKDKWRNMSVSA 60 (272)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~KyG~--GkW~~I~~~~~f~~~l~~RT~vdLKDKWRnl~~~~ 60 (272)
|++.||..|...|++.+.+||. +.|..|..|-+ |..++...++.=+..|....
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~----L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGT----LPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS----SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc----cccCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999994 78999999854 57899999998887776654
No 76
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=82.57 E-value=1.6 Score=36.69 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCC---------CccHHHHHHHHHHhhhccCceeeec
Q 024081 110 SAPKYNALIFEAISALKEPNGSDVSAILSYIEQRLEV---------PPNFRRLLSSRLRRLVAQEKLEKVQ 171 (272)
Q Consensus 110 shp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v---------~~nf~~~L~~~LKrlV~~GkLvkvK 171 (272)
...+|..||..||..-. .+..++.-|..||+++|.- ...++..|+..|- -+.-|++|.
T Consensus 41 Pp~SYa~LI~~AI~sSp-~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNLS---Lnk~F~Kv~ 107 (150)
T 1e17_A 41 GNQSYAELISQAIESAP-EKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 107 (150)
T ss_dssp CSCCHHHHHHHHHHHSS-SCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHHH---SSTTEEEEC
T ss_pred CCCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCchhccCCCCccccchhhccceeee---eeeeeEecC
Confidence 45689999999999854 3458999999999999821 1345556666553 456677764
No 77
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=73.35 E-value=0.69 Score=45.46 Aligned_cols=41 Identities=24% Similarity=0.465 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHH
Q 024081 6 QKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKW 53 (272)
Q Consensus 6 ~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKW 53 (272)
..||.+|...+..|+.+||. +|..|.. +|++||..+|-.-|
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~------~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ------MLPDKSIASLVKFY 230 (482)
T ss_dssp ------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH------HcCCCCHHHHHHHh
Confidence 47999999999999999999 9999986 47899999997653
No 78
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=67.19 E-value=5.9 Score=36.66 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCCccccccccccCccCCCCCHHhHHHHH
Q 024081 6 QKWTAEEEEALRAGVAKHGTGKWKNIQRDPEFNPFLFSRSNIDLKDKW 53 (272)
Q Consensus 6 ~~WT~EEe~~L~~GV~KyG~GkW~~I~~~~~f~~~l~~RT~vdLKDKW 53 (272)
..||..+-..++.|+.+||...|..|..+ +.+.|..+++.-.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e------v~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKD------VEGKTPEEVIEYN 152 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTS------STTCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHH------hcCCCHHHHHHHH
Confidence 46999999999999999999999999995 4589999997653
No 79
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=65.83 E-value=9.2 Score=27.76 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeec---cccccCC
Q 024081 114 YNALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQ---NCFKVKE 178 (272)
Q Consensus 114 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK---~sykl~~ 178 (272)
.+..|++.|..+.+..+.+...|++-+. ++ ++.++.+|.+|...|.|..+. +.|.+.+
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lg----vs---~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHC----CC---HHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 3567889999988888899988887764 44 468999999999999998763 4666654
No 80
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=61.42 E-value=13 Score=27.91 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeeccccccCC
Q 024081 113 KYNALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQNCFKVKE 178 (272)
Q Consensus 113 ~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK~sykl~~ 178 (272)
+..++|.+-+..+.+ |..+..|+..+.=+ -+.++..|..|+..|-+.+..+.|.|.+
T Consensus 5 s~~eIi~~IL~~i~~--~~~~t~La~~~~ls-------~~~~~~~l~~L~~~GLI~~~~~~~~LT~ 61 (95)
T 1r7j_A 5 SKLEIIQAILEACKS--GSPKTRIMYGANLS-------YALTGRYIKMLMDLEIIRQEGKQYMLTK 61 (95)
T ss_dssp CHHHHHHHHHHHHTT--CBCHHHHHHHHTCC-------HHHHHHHHHHHHHTTSEEEETTEEEECH
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHhCcC-------HHHHHHHHHHHHHCCCeEEECCeeEECh
Confidence 457788888888874 38888887765433 3578899999999999999999999864
No 81
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=57.62 E-value=11 Score=29.56 Aligned_cols=33 Identities=9% Similarity=0.247 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHhcCCCCC-CCHHHHHHHHHhhc
Q 024081 112 PKYNALIFEAISALKEPNG-SDVSAILSYIEQRL 144 (272)
Q Consensus 112 p~y~~MI~EAI~~Lker~G-SS~~AI~kyIe~~y 144 (272)
....++|.+||..+.+.+| .+..+|-.||..+|
T Consensus 20 ~~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~ 53 (105)
T 2kpm_A 20 AFPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQ 53 (105)
T ss_dssp CCCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhC
Confidence 3568999999999988777 79999999999987
No 82
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=51.57 E-value=20 Score=26.59 Aligned_cols=52 Identities=13% Similarity=0.301 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeecc
Q 024081 114 YNALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQN 172 (272)
Q Consensus 114 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK~ 172 (272)
-.++|+.||..|.+.....-.-|+ .+.+++ ++-++..|-+|-.+|.|.++.+
T Consensus 13 ~~~~v~~~i~~L~~~~~~Ta~~IA----kkLg~s---K~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTTAISLS----NRLKIN---KKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHH----HHTTCC---HHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHhCCCCcchHHHHHH----HHHCCC---HHHHHHHHHHHHHCCCEecCCC
Confidence 367899999999988776655554 455565 4668999999999999988655
No 83
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=50.43 E-value=37 Score=24.92 Aligned_cols=59 Identities=17% Similarity=0.279 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeec---cccccCCcc
Q 024081 115 NALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQ---NCFKVKEDA 180 (272)
Q Consensus 115 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK---~sykl~~~~ 180 (272)
+.-|++.|.......+.+..-|++-+. ++ ++-++.+|.+|...|.|..+. +.|.+.++.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg----vs---r~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT----CC---HHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcH
Confidence 455778888766666778877776654 54 568999999999999998763 477776543
No 84
>1psm_A SPAM-H1; polymorphic antigen; NMR {Plasmodium falciparum} SCOP: j.18.1.1
Probab=50.02 E-value=1.2 Score=29.04 Aligned_cols=23 Identities=43% Similarity=0.409 Sum_probs=10.8
Q ss_pred HhhhhhhhHHHHHHHHHHHHHhH
Q 024081 224 DAENKSFVAAEAVKEAERVSRMA 246 (272)
Q Consensus 224 EAE~~~~~A~eA~~eae~~~~~a 246 (272)
+||.+.-+|++|+++||.++++|
T Consensus 12 dAe~aAkdAe~a~~~AEqAsKdA 34 (38)
T 1psm_A 12 DAEQAAKDAENASKEAEEAAKEA 34 (38)
T ss_dssp HHHSTTTTTTHHHHHTTTTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555444444
No 85
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=46.79 E-value=42 Score=24.24 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhhccCceeeeccccccCCc
Q 024081 151 RRLLSSRLRRLVAQEKLEKVQNCFKVKED 179 (272)
Q Consensus 151 ~~~L~~~LKrlV~~GkLvkvK~sykl~~~ 179 (272)
...++.+|+.|...|.|....|.|.|.+.
T Consensus 57 ~~tv~~~L~~L~~~Glv~~~~g~y~l~~~ 85 (96)
T 1y0u_A 57 KKQLDYHLKVLEAGFCIERVGERWVVTDA 85 (96)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEECTT
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEECCC
Confidence 45689999999999999987788888653
No 86
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=46.43 E-value=23 Score=26.96 Aligned_cols=47 Identities=26% Similarity=0.413 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHhcCCCCC-CCHHHHHHHHHhhc-CC-CccHH-HHHHHHHH
Q 024081 113 KYNALIFEAISALKEPNG-SDVSAILSYIEQRL-EV-PPNFR-RLLSSRLR 159 (272)
Q Consensus 113 ~y~~MI~EAI~~Lker~G-SS~~AI~kyIe~~y-~v-~~nf~-~~L~~~LK 159 (272)
...++|.+||..+.+.+| .+..+|-.||..+| .. |.||. +.|+.-|+
T Consensus 8 ~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnYGy~kLs~Li~ 58 (92)
T 2kzv_A 8 PLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNWGHGRLSQMVK 58 (92)
T ss_dssp SHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCccccCcccHHHHHH
Confidence 578999999999988777 79999999999987 33 44432 23444444
No 87
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=43.50 E-value=38 Score=25.50 Aligned_cols=55 Identities=15% Similarity=0.248 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeecccc-ccC
Q 024081 114 YNALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQNCF-KVK 177 (272)
Q Consensus 114 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK~sy-kl~ 177 (272)
..+.|++++....+|- +-.- |.+.-+++ ++-|+.+|++|-..|+|+.++.+| .|.
T Consensus 20 ~eekVLe~LkeaG~Pl--kage----Iae~~Gvd---KKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPV--KLAQ----LVKECQAP---KRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSCE--EHHH----HHHHHTSC---HHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred HHHHHHHHHHHcCCCC--CHHH----HHHHHCCC---HHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 3678999998877763 2223 33344555 678999999999999999998754 443
No 88
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=42.96 E-value=20 Score=26.20 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCCCCCH---HHHHHHHHhhc
Q 024081 116 ALIFEAISALKEPNGSDV---SAILSYIEQRL 144 (272)
Q Consensus 116 ~MI~EAI~~Lker~GSS~---~AI~kyIe~~y 144 (272)
+-|-.||++...|.|.|. +-|+.||..||
T Consensus 51 eyinnaisafssrtgisqetaqkiadfitsny 82 (82)
T 3fbl_A 51 EYINNAISAFSSRTGISQETAQKIADFITSNY 82 (82)
T ss_dssp HHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHhcCC
Confidence 335568899999999986 45889999887
No 89
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=41.62 E-value=70 Score=22.90 Aligned_cols=51 Identities=8% Similarity=0.184 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeec
Q 024081 115 NALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQ 171 (272)
Q Consensus 115 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK 171 (272)
.-.|+..| .+.+|.+...|.+.|.+...+. ...++..|++|+..|-+.+..
T Consensus 10 q~~iL~~l---~~~~~~~~~el~~~la~~l~is---~~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 10 EAIVLAYL---YDNEGIATYDLYKKVNAEFPMS---TATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp HHHHHHHH---TTCTTCBHHHHHHHHHTTSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHH---HHcCCcCHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCEEEEe
Confidence 33455555 4557889999988887777664 457889999999999998753
No 90
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=37.91 E-value=18 Score=26.72 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhccCceee-eccccccC
Q 024081 152 RLLSSRLRRLVAQEKLEK-VQNCFKVK 177 (272)
Q Consensus 152 ~~L~~~LKrlV~~GkLvk-vK~sykl~ 177 (272)
..|..-|-++|..|+|+- ..|.|||+
T Consensus 48 ~eL~~fL~~~v~e~kL~~~~gG~YkL~ 74 (74)
T 1ldd_A 48 QQLEGYLNTLADEGRLKYIANGSYEIV 74 (74)
T ss_dssp HHHHHHHHHHHHTTSEECCTTTEEEEC
T ss_pred HHHHHHHHHHHhCCeEEEeCCCEEeCC
Confidence 689999999999999997 58899984
No 91
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=31.37 E-value=1.1e+02 Score=21.87 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=32.8
Q ss_pred HhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeecc----ccccCC
Q 024081 123 SALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQN----CFKVKE 178 (272)
Q Consensus 123 ~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK~----sykl~~ 178 (272)
..|.+ ++.+...|+..+ +++ ...++.+|+.|...|.+...+. .|.+.+
T Consensus 30 ~~L~~-~~~~~~ela~~l----~is---~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~ 81 (98)
T 3jth_A 30 CMLHN-QELSVGELCAKL----QLS---QSALSQHLAWLRRDGLVTTRKEAQTVYYTLKS 81 (98)
T ss_dssp HHTTT-SCEEHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEECCTTCCEEEECC
T ss_pred HHHhc-CCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCeEEEEeCCEEEEEECH
Confidence 33444 556777777666 333 4579999999999999987643 455543
No 92
>1k4u_P Phagocyte NADPH oxidase subunit P47PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens}
Probab=30.66 E-value=15 Score=23.18 Aligned_cols=9 Identities=56% Similarity=0.940 Sum_probs=7.0
Q ss_pred HHHHHHHhc
Q 024081 256 AKEIFERCS 264 (272)
Q Consensus 256 a~ei~~~c~ 264 (272)
..+||+||+
T Consensus 13 ~~lIl~RCs 21 (32)
T 1k4u_P 13 ADLILNRCS 21 (32)
T ss_dssp HHHHHHSSC
T ss_pred HHHHHHHcc
Confidence 358999997
No 93
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=30.60 E-value=24 Score=24.72 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=28.9
Q ss_pred HhcCCCCCCCHHHHHHHHHhhc---CCCccHHHHHHHHHHhh
Q 024081 123 SALKEPNGSDVSAILSYIEQRL---EVPPNFRRLLSSRLRRL 161 (272)
Q Consensus 123 ~~Lker~GSS~~AI~kyIe~~y---~v~~nf~~~L~~~LKrl 161 (272)
..+.+.-|.|+.+|..++..+- .+.+..+..|...++.+
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 4455567999999999999876 77777777776666543
No 94
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=30.43 E-value=1.3e+02 Score=20.73 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeec
Q 024081 114 YNALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQ 171 (272)
Q Consensus 114 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK 171 (272)
....|+..|-. ..+.+...|...+.....+. ...+...|++|+..|-|.+.+
T Consensus 10 ~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s---~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWK---HSSINTNEVIKELSKTSTWS---PKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHhhcCCcc---HHHHHHHHHHHHHCCCeEEEe
Confidence 45667777766 45789999999997643232 467899999999999999865
No 95
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=29.75 E-value=70 Score=22.08 Aligned_cols=54 Identities=15% Similarity=0.366 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeec-ccccc
Q 024081 114 YNALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQ-NCFKV 176 (272)
Q Consensus 114 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK-~sykl 176 (272)
...-|++.+.. +....|...|++ ...++ +..+...|+.|...|.|+..+ |.|.|
T Consensus 11 ~~~~IL~~L~~--~~~~~s~~eLA~----~lgls---r~tv~~~l~~L~~~G~I~~~~~G~y~l 65 (67)
T 2heo_A 11 LEQKILQVLSD--DGGPVAIFQLVK----KCQVP---KKTLNQVLYRLKKEDRVSSPSPKYWSI 65 (67)
T ss_dssp HHHHHHHHHHH--HCSCEEHHHHHH----HHCSC---HHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred HHHHHHHHHHH--cCCCcCHHHHHH----HHCcC---HHHHHHHHHHHHHCCcEecCCCceEee
Confidence 35567777764 223366666554 44565 678889999999999988754 57776
No 96
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=29.14 E-value=78 Score=23.89 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=38.9
Q ss_pred HHHHHHHHHhc-CCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeeccccccC
Q 024081 115 NALIFEAISAL-KEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQNCFKVK 177 (272)
Q Consensus 115 ~~MI~EAI~~L-ker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK~sykl~ 177 (272)
..-++.+|..+ .+..+.+...|+..+. ++ ...++..|++|...|-|.+..+.|.|.
T Consensus 15 ~~~~L~~l~~l~~~~~~~s~~ela~~l~----is---~~tv~~~l~~Le~~Gli~r~~~~~~Lt 71 (139)
T 2x4h_A 15 EFSYLLTIKRYNDSGEGAKINRIAKDLK----IA---PSSVFEEVSHLEEKGLVKKKEDGVWIT 71 (139)
T ss_dssp HHHHHHHHHHHHTTTSCBCHHHHHHHHT----CC---HHHHHHHHHHHHHTTSEEEETTEEEEC
T ss_pred HHHHHHHHHHHHhcCCCcCHHHHHHHhC----CC---hHHHHHHHHHHHHCCCEEecCCeEEEC
Confidence 34466677665 3445678888877653 43 567899999999999988765555553
No 97
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=26.62 E-value=79 Score=22.21 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=28.2
Q ss_pred CCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeec
Q 024081 126 KEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQ 171 (272)
Q Consensus 126 ker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK 171 (272)
.+..+.+...|+..+ +++ ...++.+|+.|...|.|...+
T Consensus 34 ~~~~~~s~~ela~~l----~is---~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 34 SGSPGTSAGELTRIT----GLS---ASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp TTCCSEEHHHHHHHH----CCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCCcCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCEEEEe
Confidence 444566777766655 333 457899999999999998764
No 98
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.59 E-value=1.4e+02 Score=21.58 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=18.7
Q ss_pred HHHHHHHHhhhccCceeeeccc
Q 024081 152 RLLSSRLRRLVAQEKLEKVQNC 173 (272)
Q Consensus 152 ~~L~~~LKrlV~~GkLvkvK~s 173 (272)
..+...|+.|...|.|.++.|.
T Consensus 39 ~TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 39 YQVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHHCCcEEecCCC
Confidence 4589999999999999997653
No 99
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=23.44 E-value=59 Score=24.27 Aligned_cols=49 Identities=16% Similarity=0.279 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHhhcCCCccHHHHHHHHHHhhhccCceeeecc
Q 024081 116 ALIFEAISALKEPNGSDVSAILSYIEQRLEVPPNFRRLLSSRLRRLVAQEKLEKVQN 172 (272)
Q Consensus 116 ~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v~~nf~~~L~~~LKrlV~~GkLvkvK~ 172 (272)
.+...-|.-|+ .+|.+...|++- .+++ +..++.+|.+|...|.|.+..+
T Consensus 17 ~~~~~IL~lL~-~~g~sa~eLAk~----LgiS---k~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 17 EIVCEAIKTIG-IEGATAAQLTRQ----LNME---KREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHHHS-SSTEEHHHHHHH----SSSC---HHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHH----HCcC---HHHHHHHHHHHHHCCCEEeCCC
Confidence 34555566677 577666666554 4554 4689999999999999998655
No 100
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=20.51 E-value=1e+02 Score=22.46 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 024081 113 KYNALIFEAISALKEPNGSDVSAILSYIE 141 (272)
Q Consensus 113 ~y~~MI~EAI~~Lker~GSS~~AI~kyIe 141 (272)
++.+||.|.|..|+.+.-.+..-|++-|+
T Consensus 27 ~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE 55 (77)
T 3tdu_C 27 KHQQLLGEVLTQLSSRFKPRVPVIKKCID 55 (77)
T ss_dssp EHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred eHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 46788888888888776666666666555
Done!