Query 024082
Match_columns 272
No_of_seqs 73 out of 75
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 08:49:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14736 N_Asn_amidohyd: Prote 100.0 9.7E-82 2.1E-86 579.7 23.1 197 42-272 1-202 (274)
2 PRK13498 chemoreceptor glutami 96.6 0.013 2.8E-07 51.5 8.9 138 61-225 7-158 (167)
3 PRK13490 chemoreceptor glutami 96.6 0.011 2.5E-07 51.5 8.5 136 62-225 4-155 (162)
4 PRK13493 chemoreceptor glutami 96.5 0.035 7.6E-07 50.7 10.8 132 61-225 28-182 (213)
5 PRK13497 chemoreceptor glutami 96.4 0.052 1.1E-06 48.5 11.2 133 60-225 6-155 (184)
6 PRK13495 chemoreceptor glutami 96.3 0.024 5.1E-07 49.5 8.5 130 64-225 4-148 (159)
7 PRK13494 chemoreceptor glutami 96.2 0.028 6.1E-07 49.4 8.6 130 61-222 11-154 (163)
8 PRK13489 chemoreceptor glutami 96.1 0.032 6.9E-07 51.7 8.5 135 61-226 18-169 (233)
9 PRK13491 chemoreceptor glutami 95.8 0.059 1.3E-06 48.9 9.0 134 60-226 12-159 (199)
10 PRK13488 chemoreceptor glutami 95.8 0.063 1.4E-06 46.7 8.7 134 62-225 2-150 (157)
11 COG1871 CheD Chemotaxis protei 95.7 0.041 8.9E-07 48.7 7.4 104 60-180 6-126 (164)
12 PRK13487 chemoreceptor glutami 95.1 0.12 2.6E-06 46.8 8.6 134 61-225 21-170 (201)
13 PF03975 CheD: CheD chemotacti 42.3 30 0.00065 28.2 3.3 89 111-223 16-105 (114)
14 PF04308 DUF458: Protein of un 30.2 2.4E+02 0.0053 24.6 7.0 64 79-142 20-104 (144)
15 PF14251 DUF4346: Domain of un 21.5 43 0.00094 28.5 0.9 24 210-234 44-67 (119)
16 COG4848 Uncharacterized protei 20.8 64 0.0014 30.4 1.9 17 67-83 197-214 (265)
No 1
>PF14736 N_Asn_amidohyd: Protein N-terminal asparagine amidohydrolase
Probab=100.00 E-value=9.7e-82 Score=579.75 Aligned_cols=197 Identities=40% Similarity=0.680 Sum_probs=190.7
Q ss_pred hhccCcceEeecCCCCCCCCeEEEEeceeeEEecCC--ceeeeecCCCceeeEEEEEeCCCCceEEEeccCCchhhHHHH
Q 024082 42 SFKSMEETKVSVSSETPSPSKYVYVFQREYATVDPA--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNPEIVDIGLC 119 (272)
Q Consensus 42 ~l~~~p~~~v~~~~e~s~~~~lLYV~QRE~A~t~P~--~V~ilGSDdATTChivVlRhtgsGat~laH~Dgs~~v~~~v~ 119 (272)
+|+++|.+.++ |+|+|||+|||||||+|+ +|+|||||||||||||||||++|||||||||||+++ +++|+
T Consensus 1 ~~~s~~~~~~~-------~~~~lYV~QrE~A~~~p~d~~v~~lGSDdATTC~ivVlRh~~sg~t~laH~Dgs~~-~~~v~ 72 (274)
T PF14736_consen 1 QFRSQPHKVVG-------PKGLLYVQQREFATTTPADKSVSILGSDDATTCHIVVLRHTGSGATCLAHLDGSDT-EEGVA 72 (274)
T ss_pred CcccCCceecC-------CCeeEEEecceeEEecCccCccceEecCCCcEEEEEEEEcCCCCcEEEEEecCCCh-hhHHH
Confidence 58999999999 999999999999999999 699999999999999999999999999999999997 99999
Q ss_pred HHHHhh---cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCc
Q 024082 120 QMLSLV---VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNT 196 (272)
Q Consensus 120 ~ml~~l---~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt 196 (272)
+|++++ +.++.++||||||||||+|+ +|||++||.+||++|||++++|||+||||+++||
T Consensus 73 ~ml~~v~~~~~~~~~~~lelhLVGGF~D~-----------------~~~S~~l~~~ll~~f~~~~~~~~L~t~Cv~~~Nt 135 (274)
T PF14736_consen 73 QMLSSVQSLSNGYPEGRLELHLVGGFDDD-----------------RGYSQKLSLNLLEAFHKQPEEIHLRTFCVTELNT 135 (274)
T ss_pred HHHHHHHhhccCCCCCceEEEEEccccCc-----------------ccchHHHHHHHHHHHHcCcceEEEEEEEEccCCC
Confidence 999996 44568999999999999999 9999999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEEEecCCeeeccccCCCCCCchHHHhhhhhhccccCcCCCCeeEeeeeCCCCeEEEccCcC
Q 024082 197 KRDSQGNAYPIFHGFLVETCTGSLSPASFDGTSRCPDEMVRRIRVTSSYEDTSWNGKLLETYDTQTDRFVIAPCRW 272 (272)
Q Consensus 197 ~~~~~g~~~PiiyGi~VnvkTG~IfpAsF~~~~rGPde~lR~aR~~~s~~d~~~g~~l~~iYD~~~~~l~I~Pf~w 272 (272)
+++ +|++|||||||+||+|||+||||+| ++|||+|+||+||+++ |+++|+||||+++++|+|+||+|
T Consensus 136 ~~~-~g~~~Pii~Gi~VnvkTG~IfpAsF--~~rGP~~~lR~aR~~~------~~~~l~~iYD~~~~~l~I~Pf~~ 202 (274)
T PF14736_consen 136 RVE-DGIHRPIIYGIAVNVKTGEIFPASF--PDRGPDEILRSARVFT------GGGRLLNIYDTETDQLRIGPFHW 202 (274)
T ss_pred ccC-CCccCcEEEEEEEEecCCeEecccC--cccCCcHHHHHHHHhc------CCCceEEEEECCCCeEEECCCcC
Confidence 988 8999999999999999999999999 9999999999999995 79999999999999999999999
No 2
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.64 E-value=0.013 Score=51.50 Aligned_cols=138 Identities=11% Similarity=0.160 Sum_probs=93.0
Q ss_pred CeEEEEeceeeEEec-CC-ceeeeecCCCceeeEEEEEeCCCCceEEEeccC-----------CchhhHHHHHHHHhh-c
Q 024082 61 SKYVYVFQREYATVD-PA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDN-----------PEIVDIGLCQMLSLV-V 126 (272)
Q Consensus 61 ~~lLYV~QRE~A~t~-P~-~V~ilGSDdATTChivVlRhtgsGat~laH~Dg-----------s~~v~~~v~~ml~~l-~ 126 (272)
...++|.+.|++++. |. -..+||| |+.|+|.++..+.-.|+|+== ...++.|+..|++.+ .
T Consensus 7 ~~~v~v~~Ge~~v~~~p~~i~T~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~rY~d~ai~~Ll~~m~~ 81 (167)
T PRK13498 7 TKEIVLQPGEVVFATRPTRLRTLLGS-----CVAITFWHPQQHIGGMCHFMLPGRIRKHQPLDGRYADEAMELLIRHALA 81 (167)
T ss_pred ceEEEEeCCcEEEECCCCEEEEECcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCcCcHHHHHHHHHHHHHH
Confidence 457899999999985 55 3566886 999999999999999999822 234689999999986 4
Q ss_pred CCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCCCcc
Q 024082 127 DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYP 206 (272)
Q Consensus 127 ~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~~~P 206 (272)
.+....+|++.|.||=.=-.....+. ......++......+.|++.. |.|..-=+++.+-+
T Consensus 82 ~Ga~~~~l~aKifGGA~m~~~~~~~~--------~~~~IG~rNi~~a~~~L~~~g--i~i~a~DvGG~~gR--------- 142 (167)
T PRK13498 82 NGTPPEDYQVKLFGGGNMFPELQQDL--------HTLNVADKNIHAALALAEQNG--LHLKAQDLGSTGHR--------- 142 (167)
T ss_pred cCCCHHHEEEEEEECcccccccccCc--------ccCChHHHHHHHHHHHHHHCC--CcEEEEeCCCCCCc---------
Confidence 45567799999999944321000000 013455667777777776644 44444444443321
Q ss_pred eEEEEEEEecCCeeecccc
Q 024082 207 IFHGFLVETCTGSLSPASF 225 (272)
Q Consensus 207 iiyGi~VnvkTG~IfpAsF 225 (272)
=+.+++.||++.=-..
T Consensus 143 ---~i~f~~~tG~v~vk~~ 158 (167)
T PRK13498 143 ---SIIFDLWNGNVWVRHQ 158 (167)
T ss_pred ---EEEEECCCCEEEEEEC
Confidence 3578888998765444
No 3
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.63 E-value=0.011 Score=51.54 Aligned_cols=136 Identities=11% Similarity=0.190 Sum_probs=92.7
Q ss_pred eEEEEeceeeEEe-cCC-ceee-eecCCCceeeEEEEEeCCCCceEEEeccC------------CchhhHHHHHHHHhh-
Q 024082 62 KYVYVFQREYATV-DPA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDN------------PEIVDIGLCQMLSLV- 125 (272)
Q Consensus 62 ~lLYV~QRE~A~t-~P~-~V~i-lGSDdATTChivVlRhtgsGat~laH~Dg------------s~~v~~~v~~ml~~l- 125 (272)
..++|...|++++ .|. -..+ ||| |+.|+|.++..+.-.|+|+== ...++.|+..|++.+
T Consensus 4 ~~i~v~ige~~v~~~p~~i~T~~LGS-----CVav~l~dp~~~igGm~H~mLP~~~~~~~~~~~~rY~d~ai~~Li~~m~ 78 (162)
T PRK13490 4 KEIKVGIADLNVAKSPDKIITVGLGS-----CIGIALYDGIKCIGGLSHIMLPDSTQFSNVTNPMKFADLAIPILIEKME 78 (162)
T ss_pred cEEEEEeCCEEEECCCCEEEEEcCcc-----eEEEEEEcCCCCEEEEEEEECCCCccCCCCCCCccCHHHHHHHHHHHHH
Confidence 3678999999999 577 3555 786 999999999999999999721 225789999999996
Q ss_pred cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCCCc
Q 024082 126 VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAY 205 (272)
Q Consensus 126 ~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~~~ 205 (272)
..+....+|++.|.||=+=-... .+. ......++......+.|.+.. |.+..-=+++.+.+
T Consensus 79 ~~Ga~~~~l~aKifGGA~m~~~~--------~~~-~~~~IG~rNv~~a~~~L~~~g--I~i~a~dvGG~~gR-------- 139 (162)
T PRK13490 79 KLGANKRNLKAKIAGGASMFNFS--------DKS-MVMDIGNRNGKAVKKKLKELS--IPILAEDIGGNKGR-------- 139 (162)
T ss_pred HcCCCHHHEEEEEEeCccccCCC--------Ccc-ccCChhHHHHHHHHHHHHHcC--CcEEEEECCCCCCc--------
Confidence 44666789999999996532100 000 013455666666666666644 44444445544432
Q ss_pred ceEEEEEEEecCCeeecccc
Q 024082 206 PIFHGFLVETCTGSLSPASF 225 (272)
Q Consensus 206 PiiyGi~VnvkTG~IfpAsF 225 (272)
=+-+++.||++.=-..
T Consensus 140 ----~i~f~~~tG~v~vk~~ 155 (162)
T PRK13490 140 ----TMIFDTSDGKVYIKTV 155 (162)
T ss_pred ----EEEEECCCCEEEEEEc
Confidence 2568888888865544
No 4
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.46 E-value=0.035 Score=50.65 Aligned_cols=132 Identities=12% Similarity=0.142 Sum_probs=94.3
Q ss_pred CeEEEEeceeeEEec-CCce-eeeecCCCceeeEEEEEeCCCCceEEEecc--------------------CCchhhHHH
Q 024082 61 SKYVYVFQREYATVD-PALV-DYVGTDEATTCVGLVIRNRRNRMTSIAHMD--------------------NPEIVDIGL 118 (272)
Q Consensus 61 ~~lLYV~QRE~A~t~-P~~V-~ilGSDdATTChivVlRhtgsGat~laH~D--------------------gs~~v~~~v 118 (272)
...++|..+|++++. |..+ -+||| |+.|+|.++..+.-.|+|+= ....++.|+
T Consensus 28 ~~~v~l~pGe~~v~~~~~~itT~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~~~~~~~~rY~d~Am 102 (213)
T PRK13493 28 RHWVKVMPGGVYATSDQEIIHTGLGS-----CVSACAWDIEMKVGGMNHFLLPFNNQFESQHWHPQALLSDSSRYGCYAM 102 (213)
T ss_pred ceEEEEecCeEEEECCCeEEEEECcc-----ceEEEEEcCCCCEEEEEEEEcCCCcccCccccccccccCCccccHHHHH
Confidence 456889999999985 4443 34776 99999999999999999972 123467799
Q ss_pred HHHHHhh-cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCce
Q 024082 119 CQMLSLV-VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTK 197 (272)
Q Consensus 119 ~~ml~~l-~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~ 197 (272)
..|++.+ ..+....+|++.|.||=+=-.. .....++.....++.|.+.. |.+..-=+++.+.+
T Consensus 103 ~~Li~~m~~~Ga~~~~l~aKifGGA~m~~~--------------~~~IG~rNi~~a~~~L~~~g--I~Iva~DvGG~~gR 166 (213)
T PRK13493 103 EVLINRLLSMGAERERLKFKLFGGAHLMGY--------------QSLVGEKNVEFVLEYAKREK--LNVVAQDLGGAQPR 166 (213)
T ss_pred HHHHHHHHHcCCCHHHeEEEEEeCcccccc--------------cccHhHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc
Confidence 9999986 4566677999999999653210 03466677777777777654 44454445554432
Q ss_pred ecCCCCCcceEEEEEEEecCCeeecccc
Q 024082 198 RDSQGNAYPIFHGFLVETCTGSLSPASF 225 (272)
Q Consensus 198 ~~~~g~~~PiiyGi~VnvkTG~IfpAsF 225 (272)
=+.+++.||++.--..
T Consensus 167 ------------ki~f~~~tG~v~vk~~ 182 (213)
T PRK13493 167 ------------KLLFDPQTGQAWVKRI 182 (213)
T ss_pred ------------EEEEECCCCEEEEEEc
Confidence 2578999998887666
No 5
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.37 E-value=0.052 Score=48.53 Aligned_cols=133 Identities=14% Similarity=0.185 Sum_probs=94.0
Q ss_pred CCeEEEEeceeeEEec-CC-ce-eeeecCCCceeeEEEEEeCCCCceEEEeccC-------------CchhhHHHHHHHH
Q 024082 60 PSKYVYVFQREYATVD-PA-LV-DYVGTDEATTCVGLVIRNRRNRMTSIAHMDN-------------PEIVDIGLCQMLS 123 (272)
Q Consensus 60 ~~~lLYV~QRE~A~t~-P~-~V-~ilGSDdATTChivVlRhtgsGat~laH~Dg-------------s~~v~~~v~~ml~ 123 (272)
-.+-++|.+.|++++. |. .+ .+||| |+.|+|.++..+.-.|+|+== ....+.++..|++
T Consensus 6 ~~~~v~v~~Ge~~v~~~p~~~itt~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~rY~d~ai~~Li~ 80 (184)
T PRK13497 6 AARRVHIIQGEYKVVNDPNVVLSTILGS-----CVAACLRDPVAGVGGMNHFLLPGSATSPTSGGDATRYGVHLMELLIN 80 (184)
T ss_pred cCceEEEecCcEEEECCCCEEEEEeCcc-----ceEEEEEcCCCCEEEEEEEECCCCCCcCCCCCCccchHHHHHHHHHH
Confidence 3568999999999985 55 33 45886 999999999999999999721 2246789999999
Q ss_pred hh-cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCC
Q 024082 124 LV-VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQG 202 (272)
Q Consensus 124 ~l-~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g 202 (272)
.+ ..+....+|++.|.||-.=-.. .....++......+.|++.. |.+..-=+++.+-+
T Consensus 81 ~m~~~Ga~~~~l~aKifGGA~m~~~--------------~~~IG~rNi~~a~~~L~~~g--I~i~a~DvGG~~gR----- 139 (184)
T PRK13497 81 GLLKQGARRDRLEAKIFGGAKTIAT--------------FSNVGEQNAAFAMQFLRDEG--IPVVGSSTGGEHGR----- 139 (184)
T ss_pred HHHHcCCCHHHEEEEEEeCchhccc--------------cccHHHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc-----
Confidence 86 4566678999999999653210 13456677777777777654 44444444444331
Q ss_pred CCcceEEEEEEEecCCeeecccc
Q 024082 203 NAYPIFHGFLVETCTGSLSPASF 225 (272)
Q Consensus 203 ~~~PiiyGi~VnvkTG~IfpAsF 225 (272)
=+-+++.||++.--..
T Consensus 140 -------~v~f~~~tG~v~~k~~ 155 (184)
T PRK13497 140 -------KLEYWPVSGRARQYPL 155 (184)
T ss_pred -------EEEEECCCCeEEEEEc
Confidence 3678899998865544
No 6
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.31 E-value=0.024 Score=49.52 Aligned_cols=130 Identities=16% Similarity=0.217 Sum_probs=90.4
Q ss_pred EEEeceeeEEec-CC-ceee-eecCCCceeeEEEEEeCCCCceEEEeccC-----------CchhhHHHHHHHHhh-cCC
Q 024082 64 VYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDN-----------PEIVDIGLCQMLSLV-VDH 128 (272)
Q Consensus 64 LYV~QRE~A~t~-P~-~V~i-lGSDdATTChivVlRhtgsGat~laH~Dg-----------s~~v~~~v~~ml~~l-~~~ 128 (272)
+||.+.|+++.. |. ...+ ||| |+.|+|.++..+.-.|+|+== ...++.++..|++.+ ..+
T Consensus 4 v~v~~Ge~~v~~~p~~l~T~~LGS-----CVaV~l~Dp~~~igGm~H~mLP~~~~~~~~~~~rY~d~ai~~Li~~m~~~G 78 (159)
T PRK13495 4 KVIGIGEYAVMKNPGVIVTLGLGS-----CVGVCMRDPVAKVGAMAHVMLPDSGGKETDKPGKYADTAIKTLVEELKKMG 78 (159)
T ss_pred EEEecCcEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCccCHHHHHHHHHHHHHHcC
Confidence 689999999984 55 3554 886 999999999999999999722 234689999999996 445
Q ss_pred CCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCCCcceE
Q 024082 129 DLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPIF 208 (272)
Q Consensus 129 ~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~~~Pii 208 (272)
....+|++.|.||=.=-... .....++......+.|++.. |.+..-=+++...+
T Consensus 79 a~~~~l~aKifGGA~m~~~~-------------~~~IG~rNi~~a~~~L~~~g--I~i~a~dvGG~~gR----------- 132 (159)
T PRK13495 79 AKVERLEAKIAGGASMFESS-------------GMNIGARNVEAVKKHLKDFG--IKLVAEDTGGNRAR----------- 132 (159)
T ss_pred CCHHHEEEEEEeCCccCCCC-------------CCChHHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc-----------
Confidence 56789999999996543110 13455666666666666644 44444444443321
Q ss_pred EEEEEEecCCeeecccc
Q 024082 209 HGFLVETCTGSLSPASF 225 (272)
Q Consensus 209 yGi~VnvkTG~IfpAsF 225 (272)
=+-+++.||++.=-..
T Consensus 133 -~i~f~~~tG~v~vk~~ 148 (159)
T PRK13495 133 -SIEYNIETGKLLVRKV 148 (159)
T ss_pred -EEEEECCCCEEEEEEc
Confidence 2568888888765544
No 7
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.23 E-value=0.028 Score=49.38 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=90.3
Q ss_pred CeEEEEeceeeEEecCC-ceeeeecCCCceeeEEEEEeCCCCceEEEeccCC------------chhhHHHHHHHHhh-c
Q 024082 61 SKYVYVFQREYATVDPA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP------------EIVDIGLCQMLSLV-V 126 (272)
Q Consensus 61 ~~lLYV~QRE~A~t~P~-~V~ilGSDdATTChivVlRhtgsGat~laH~Dgs------------~~v~~~v~~ml~~l-~ 126 (272)
--.+|+++.|+++..+. -..+||| |+.|+|.++..+.-.|+|+==| ..++.|+..|++.+ .
T Consensus 11 ~~~~~l~~Ge~~v~~~~~i~T~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~rY~d~ai~~Ll~~m~~ 85 (163)
T PRK13494 11 RDVTIIVPGEAFVSNDRVISTILGS-----CVAVVLYDESRNLIGMNHYVLVKSDLVISPLQRGRYGVYAIPMLIDAMLE 85 (163)
T ss_pred ccEEEEecCeEEEeCCcEEEEeCcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCCcccHHHHHHHHHHHHHH
Confidence 34688999999999875 3455675 9999999999999999997333 23689999999986 4
Q ss_pred CCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCCCcc
Q 024082 127 DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYP 206 (272)
Q Consensus 127 ~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~~~P 206 (272)
.+....+|++.|.||=.=-... ......+......+.|.+.. |.+..-=+++.+-+
T Consensus 86 ~Ga~~~~l~aKifGGa~m~~~~-------------~~~IG~rNv~~a~~~L~~~g--I~i~a~DvGG~~gR--------- 141 (163)
T PRK13494 86 NGASKSNLKAKLFGGTNFMAKG-------------TIKVGLENSEFAVNTLNKYG--IPILAKDFDQSKSR--------- 141 (163)
T ss_pred cCCCHHHeEEEEEeCcccCCcc-------------cCChHHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc---------
Confidence 5666789999999996543100 13455666666666666644 44444445544331
Q ss_pred eEEEEEEEecCCeeec
Q 024082 207 IFHGFLVETCTGSLSP 222 (272)
Q Consensus 207 iiyGi~VnvkTG~Ifp 222 (272)
=+-+++.||++.=
T Consensus 142 ---~i~f~~~tG~v~v 154 (163)
T PRK13494 142 ---KIFVFPENFKVIV 154 (163)
T ss_pred ---EEEEECCCCEEEE
Confidence 2567888887754
No 8
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=96.06 E-value=0.032 Score=51.69 Aligned_cols=135 Identities=11% Similarity=0.130 Sum_probs=94.3
Q ss_pred CeEEEEeceeeEEecCC-c-eeeeecCCCceeeEEEEEeCCCCceEEEeccCC--------------chhhHHHHHHHHh
Q 024082 61 SKYVYVFQREYATVDPA-L-VDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP--------------EIVDIGLCQMLSL 124 (272)
Q Consensus 61 ~~lLYV~QRE~A~t~P~-~-V~ilGSDdATTChivVlRhtgsGat~laH~Dgs--------------~~v~~~v~~ml~~ 124 (272)
...++|.+.||+++.+. . ..+||| |+.|+|+++..+.-.|.|+==| ...+.++..|++.
T Consensus 18 ~~~v~l~pGE~~Vs~~~~vItTvLGS-----CVaV~LyDp~~~IGGM~HfmLP~~~~~~~~~~~~~~rYgd~Ame~Li~~ 92 (233)
T PRK13489 18 RPGVKLLPNEFYTTREDMVLVTVLGS-----CVAACLHDPVAGIGGMNHFMLPDDGADAGAAASESMRYGAYAMEVLINE 92 (233)
T ss_pred cceEEEecCeEEEeCCCeEEEEECcc-----ceEEEEEcCCCCEEEEEEEECCCCcccCccCCCCCcccHHHHHHHHHHH
Confidence 34688999999999864 2 445776 9999999999999999997211 3568899999998
Q ss_pred h-cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCC
Q 024082 125 V-VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGN 203 (272)
Q Consensus 125 l-~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~ 203 (272)
+ ..+....+|++.|.||=.--... ......++.....++.|++.. |.|..-=+++..-+
T Consensus 93 m~~~Ga~r~~L~AKifGGA~m~~~~------------~~~~IG~RNieaa~~~L~~~g--I~IvaeDvGG~~gR------ 152 (233)
T PRK13489 93 LIKAGGRRERFEAKVFGGAAVLAGM------------TTINIGDRNADFVRRYLALER--IRITAEDLQGVHPR------ 152 (233)
T ss_pred HHHcCCCHHHEEEEEEECccccCCC------------CcCChhHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc------
Confidence 6 44666789999999996543110 013566677777777776644 44444444433321
Q ss_pred CcceEEEEEEEecCCeeeccccC
Q 024082 204 AYPIFHGFLVETCTGSLSPASFD 226 (272)
Q Consensus 204 ~~PiiyGi~VnvkTG~IfpAsF~ 226 (272)
=|.+++.||++.=-...
T Consensus 153 ------kV~f~~~TG~v~Vk~~~ 169 (233)
T PRK13489 153 ------KVAFMPRTGRAMVKKLR 169 (233)
T ss_pred ------EEEEECCCCEEEEEEcC
Confidence 36688899988776664
No 9
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.83 E-value=0.059 Score=48.89 Aligned_cols=134 Identities=10% Similarity=0.115 Sum_probs=93.6
Q ss_pred CCeEEEEeceeeEEec-CCc--eeeeecCCCceeeEEEEEeCCCCceEEEeccCC----------chhhHHHHHHHHhh-
Q 024082 60 PSKYVYVFQREYATVD-PAL--VDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP----------EIVDIGLCQMLSLV- 125 (272)
Q Consensus 60 ~~~lLYV~QRE~A~t~-P~~--V~ilGSDdATTChivVlRhtgsGat~laH~Dgs----------~~v~~~v~~ml~~l- 125 (272)
.-..+||.+.||+++. |.. -.+||| |+.|+|.+...+.-.|+|+==| ...+.|+..|++.+
T Consensus 12 ~~~~v~V~~Ge~~vs~~p~~litT~LGS-----CVaV~LyDp~~~IGGM~H~mLP~~~~~~~~~~rYgd~Ai~~Li~~m~ 86 (199)
T PRK13491 12 QISITHVTQGSCVASDSPNEVYATILGS-----CICTCMCDPVAGVGGMNHFLLPSADVEDAQHLRYGSHAMELLINALL 86 (199)
T ss_pred eEEEEEEecCcEEEECCCCEEEEEeccc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCcccHHHHHHHHHHHHH
Confidence 3567999999999984 653 345886 9999999999999999998333 35689999999986
Q ss_pred cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCCCc
Q 024082 126 VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAY 205 (272)
Q Consensus 126 ~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~~~ 205 (272)
..+....+|++.|.||-.=-.. .....++......+.|.+.. |.|.--=+++.+-+
T Consensus 87 ~~Ga~~~~L~AKifGGA~M~~~--------------~~~IG~rNie~a~~~L~~~G--I~ivaeDvGG~~gR-------- 142 (199)
T PRK13491 87 KLGAARQRIEAKIFGGAMMTPQ--------------LGAIGQANAAFARRYLRDEG--IRCTAHSLGGNRAR-------- 142 (199)
T ss_pred HcCCCHHHeEEEEEeCcccccc--------------cccHHHHHHHHHHHHHHHcC--CcEEEEeCCCCCCc--------
Confidence 4466678999999999653210 02355566666666666644 44444445543321
Q ss_pred ceEEEEEEEecCCeeeccccC
Q 024082 206 PIFHGFLVETCTGSLSPASFD 226 (272)
Q Consensus 206 PiiyGi~VnvkTG~IfpAsF~ 226 (272)
=+.+++.||++.=-..+
T Consensus 143 ----kI~f~~~tG~v~vk~~~ 159 (199)
T PRK13491 143 ----RIRFWPKTGRVQQMFLG 159 (199)
T ss_pred ----EEEEECCCCEEEEEEcC
Confidence 36788999988765443
No 10
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.78 E-value=0.063 Score=46.70 Aligned_cols=134 Identities=19% Similarity=0.234 Sum_probs=92.3
Q ss_pred eEEEEeceeeEEec-CC-ceee-eecCCCceeeEEEEEeCCCCceEEEeccCC-----------chhhHHHHHHHHhh-c
Q 024082 62 KYVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMDNP-----------EIVDIGLCQMLSLV-V 126 (272)
Q Consensus 62 ~lLYV~QRE~A~t~-P~-~V~i-lGSDdATTChivVlRhtgsGat~laH~Dgs-----------~~v~~~v~~ml~~l-~ 126 (272)
.-++|.+.||+++. |. -..+ ||| |+.|+|.++..+.-.|.|+==| ..++.++..|++.+ .
T Consensus 2 ~~v~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~dp~~~igGm~H~mLP~~~~~~~~~~~rY~d~ai~~li~~m~~ 76 (157)
T PRK13488 2 MVIKVGIGEYAVGKSPEVIETSGLGS-----CVGIILYDRGKKIGGLAHVMLPESSGAGDRNPGKYADTAIPLLIEEMVK 76 (157)
T ss_pred ccEEEecCcEEEECCCCEEEEEcCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCcccHHHHHHHHHHHHHH
Confidence 34679999999987 44 3555 776 9999999999999999997322 25689999999996 4
Q ss_pred CCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCCCcc
Q 024082 127 DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYP 206 (272)
Q Consensus 127 ~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~~~P 206 (272)
.+....+|++.|.||=.=-... ......-++......+.|++.. |.+..-=+++.+-+
T Consensus 77 ~Ga~~~~l~akifGGA~m~~~~-----------~~~~~IG~rNi~~a~~~L~~~g--i~i~a~dvGG~~gR--------- 134 (157)
T PRK13488 77 LGARKSKLEAKLAGGAAMFDFS-----------SNNLNIGERNIESAKETLKKLG--IRIVAEDVGGDYGR--------- 134 (157)
T ss_pred cCCCHHHEEEEEEeCcccccCC-----------CccCChHHHHHHHHHHHHHHCC--CcEEEEEcCCCCCc---------
Confidence 4666789999999996432100 0013455666666666666644 55555555554432
Q ss_pred eEEEEEEEecCCeeecccc
Q 024082 207 IFHGFLVETCTGSLSPASF 225 (272)
Q Consensus 207 iiyGi~VnvkTG~IfpAsF 225 (272)
=+-+++.||++.=-..
T Consensus 135 ---~i~f~~~tG~v~vk~~ 150 (157)
T PRK13488 135 ---TVKFDLKTGKVIVRKA 150 (157)
T ss_pred ---EEEEECCCCEEEEEEc
Confidence 2568888888865544
No 11
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.74 E-value=0.041 Score=48.68 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=75.6
Q ss_pred CCeEEEEeceeeEEecC-C--ceeeeecCCCceeeEEEEEeCCCCceEEEecc-------------CCchhhHHHHHHHH
Q 024082 60 PSKYVYVFQREYATVDP-A--LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMD-------------NPEIVDIGLCQMLS 123 (272)
Q Consensus 60 ~~~lLYV~QRE~A~t~P-~--~V~ilGSDdATTChivVlRhtgsGat~laH~D-------------gs~~v~~~v~~ml~ 123 (272)
..+.+=|-|.||+++.. . ....||| |+.|+||...+|...|.|+= ..++.+.++..|++
T Consensus 6 ~~~~v~Vg~ge~~v~~~p~~i~ttgLGS-----CV~v~l~D~~~~vgGm~H~mLP~s~~~~~~~~~~~kY~d~ame~Lin 80 (164)
T COG1871 6 ARKEVKVGIGEYKVTKDPDVIITTGLGS-----CVGVCLRDPVNGVGGMNHFMLPDSALSGSPLSNPAKYGDTAMELLIN 80 (164)
T ss_pred hCCEEEEeeeeEEEecCCCEEEEecccc-----eEEEEEEccccCccceeEEeccCCCCCCCcCCchhhHHHHHHHHHHH
Confidence 46678899999999975 5 4778887 99999999999999999972 12345788888888
Q ss_pred hh-cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcc
Q 024082 124 LV-VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRR 180 (272)
Q Consensus 124 ~l-~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~ 180 (272)
.| ..+....|||.-|.||-.==. +.+.....++...-..+.|.+.
T Consensus 81 ~ll~~GA~r~rL~AKlfGGa~mf~------------~~s~m~IG~rNv~~~~~~L~~~ 126 (164)
T COG1871 81 ELLKLGASRERLEAKLFGGAQMFA------------FNSMMKIGERNVEFAKEFLKDE 126 (164)
T ss_pred HHHHcCCChhhheeeecccHHHHh------------ccchhhhhhHHHHHHHHHHHHc
Confidence 85 667668899999999943210 0011334556666666666653
No 12
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=95.15 E-value=0.12 Score=46.77 Aligned_cols=134 Identities=14% Similarity=0.163 Sum_probs=95.9
Q ss_pred CeEEEEeceeeEEec-CC-ceeeeecCCCceeeEEEEEeCCCCceEEEeccCC-------------chhhHHHHHHHHhh
Q 024082 61 SKYVYVFQREYATVD-PA-LVDYVGTDEATTCVGLVIRNRRNRMTSIAHMDNP-------------EIVDIGLCQMLSLV 125 (272)
Q Consensus 61 ~~lLYV~QRE~A~t~-P~-~V~ilGSDdATTChivVlRhtgsGat~laH~Dgs-------------~~v~~~v~~ml~~l 125 (272)
...++|...|++++. |. -..+||| |+.|+|.++..+.-.|+|+==| ..++.|+..|++.+
T Consensus 21 ~~~v~v~~Ge~~v~~~p~~i~T~LGS-----CVaV~l~Dp~~~iGGm~H~mLP~~~~~~~~~~~~~rY~d~A~~~Li~~m 95 (201)
T PRK13487 21 CDAAKILPGEYFVTDDDTAIVTVLGS-----CVSACLRDPVLGIGGMNHFMLPDGGDSDGPLSASARYGSYAMELLINDL 95 (201)
T ss_pred cceEEEecCcEEEECCCCEEEEECcc-----cEEEEEEcCCCCEEEEEEEECCCCCCCCCCCCCCcccHHHHHHHHHHHH
Confidence 446789999999984 55 3556776 9999999999999999997222 24688999999986
Q ss_pred -cCCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCCC
Q 024082 126 -VDHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNA 204 (272)
Q Consensus 126 -~~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~~ 204 (272)
..+....+|++.|.||=+--... ...+...+.....++.|++. .|.++..=+++.+-+
T Consensus 96 ~~~Ga~~~~l~aKlfGGA~m~~~~------------~~~~IG~rNi~~a~~~L~~~--gI~iva~DvGG~~gR------- 154 (201)
T PRK13487 96 LKLGARRENLEAKVFGGGNVLRGF------------TSMNVGERNAEFVRDYLQTE--RIPIVAEDLLDIYPR------- 154 (201)
T ss_pred HHcCCCHHHEEEEEEeCCcccCCC------------ccCCchHHHHHHHHHHHHHc--CCcEEEEECCCCCCc-------
Confidence 44556789999999996543110 01356667777777777764 455665556655542
Q ss_pred cceEEEEEEEecCCeeecccc
Q 024082 205 YPIFHGFLVETCTGSLSPASF 225 (272)
Q Consensus 205 ~PiiyGi~VnvkTG~IfpAsF 225 (272)
=+.+++.||++.=-..
T Consensus 155 -----~v~f~~~tG~v~vk~~ 170 (201)
T PRK13487 155 -----KVYFFPTTGKVLVKKL 170 (201)
T ss_pred -----EEEEECCCCEEEEEEC
Confidence 3678999999876655
No 13
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=42.32 E-value=30 Score=28.16 Aligned_cols=89 Identities=15% Similarity=0.071 Sum_probs=48.1
Q ss_pred CchhhHHHHHHHHhhc-CCCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeee
Q 024082 111 PEIVDIGLCQMLSLVV-DHDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTL 189 (272)
Q Consensus 111 s~~v~~~v~~ml~~l~-~~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~ 189 (272)
...++.++..|+..+. .+....+|++.|+||=+=-.. ..........+......+.|.+ ..|++.-.
T Consensus 16 ~rY~d~ai~~ll~~m~~~Ga~~~~l~aklfGGa~m~~~----------~~~~~~~IG~rNv~~a~~~L~~--~gi~I~a~ 83 (114)
T PF03975_consen 16 GRYGDTAIELLLDEMEKRGARPSRLEAKLFGGANMFPG----------MNSSSFNIGERNVEAARELLAE--EGIPIVAE 83 (114)
T ss_dssp CCBHHHHHHHHHHHHHTTT--GGG-EEEEEE----S----------------SS-HHHHHHHHHHHHHHH--TT--EEEE
T ss_pred ccCHHHHHHHHHHHHHHcCCCHHHeEEEEeeCcccccc----------cccccCCHHHHHHHHHHHHHHH--CCCcEEEe
Confidence 4567899999999974 456688999999999654421 0000133444455555555544 35777777
Q ss_pred EeccCCceecCCCCCcceEEEEEEEecCCeeecc
Q 024082 190 HVLGHNTKRDSQGNAYPIFHGFLVETCTGSLSPA 223 (272)
Q Consensus 190 CV~~lNt~~~~~g~~~PiiyGi~VnvkTG~IfpA 223 (272)
=|++..-+ =+-+++.||+++=-
T Consensus 84 dvGG~~~R------------~v~f~~~tG~v~vk 105 (114)
T PF03975_consen 84 DVGGNFGR------------KVRFDPATGEVWVK 105 (114)
T ss_dssp EE-SSS-E------------EEEEETTTTEEEEE
T ss_pred eCCCCCCc------------EEEEEcCCCEEEEE
Confidence 67766543 25688888887643
No 14
>PF04308 DUF458: Protein of unknown function (DUF458) ; InterPro: IPR007405 This entry is represented by Bacteriophage KVP40, Orf299. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of uncharacterised, mainly bacterial, proteins. While the functions of these proteins are unknown, an analysis has suggested that they may form a novel family within the RNASE H-like superfamily []. These proteins appear to contain all the core secondary structural elements of the RNase H-like fold and share several conserved, possible active site, residues. It was suggested, therefore, that they function as nucleases. From the taxonomic distibution of these proteins it was further inferred that they may play a role in DNA repair under stressful conditions.
Probab=30.17 E-value=2.4e+02 Score=24.60 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=38.1
Q ss_pred eeeeecCC----CceeeE--EEEEeCCCCceEEEeccCCchh---------hH----HHHHHHHh-hcC-CCCCceeEEE
Q 024082 79 VDYVGTDE----ATTCVG--LVIRNRRNRMTSIAHMDNPEIV---------DI----GLCQMLSL-VVD-HDLDAELDVY 137 (272)
Q Consensus 79 V~ilGSDd----ATTChi--vVlRhtgsGat~laH~Dgs~~v---------~~----~v~~ml~~-l~~-~~~~grLevh 137 (272)
--+||||. -.||.. +||..-|.|+.+.-|-.-.... |. +++..|.. |.. ...+..+|+|
T Consensus 20 ki~IGTDSQ~~~~~T~FvTaIvihR~GkGa~~f~~~~~~r~~~slreRi~~Et~~S~e~A~~l~~~l~~~~~~~~~~EiH 99 (144)
T PF04308_consen 20 KIIIGTDSQVKGDETCFVTAIVIHREGKGARYFYHKKKERKIMSLRERIFYETSLSLEVAEKLCDLLLPYGYADVDLEIH 99 (144)
T ss_pred EEEEecCCCcCCCceEEEEEEEEEEecCceEEEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccEEEE
Confidence 55789996 345643 2223378899999998876651 22 22222222 322 3367899999
Q ss_pred Eeccc
Q 024082 138 LIGGF 142 (272)
Q Consensus 138 LVGGF 142 (272)
|=-|-
T Consensus 100 iDIg~ 104 (144)
T PF04308_consen 100 IDIGT 104 (144)
T ss_pred EEcCC
Confidence 95554
No 15
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=21.55 E-value=43 Score=28.55 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=18.6
Q ss_pred EEEEEecCCeeeccccCCCCCCchH
Q 024082 210 GFLVETCTGSLSPASFDGTSRCPDE 234 (272)
Q Consensus 210 Gi~VnvkTG~IfpAsF~~~~rGPde 234 (272)
|+|+|.+||+++|+.+. -.|-|..
T Consensus 44 Gla~Dpetge~i~~~g~-~~r~~~~ 67 (119)
T PF14251_consen 44 GLAVDPETGEVIPCRGK-VKRTPSI 67 (119)
T ss_pred cceeCCCCCCEEEEecC-CCCceeE
Confidence 89999999999999884 2344443
No 16
>COG4848 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.80 E-value=64 Score=30.41 Aligned_cols=17 Identities=24% Similarity=0.176 Sum_probs=14.5
Q ss_pred eceeeEEecCC-ceeeee
Q 024082 67 FQREYATVDPA-LVDYVG 83 (272)
Q Consensus 67 ~QRE~A~t~P~-~V~ilG 83 (272)
.|+|||++.|+ +|-|++
T Consensus 197 ~eGem~vavPHQDVLIia 214 (265)
T COG4848 197 VEGEMAVAVPHQDVLIIA 214 (265)
T ss_pred hcceEEEeccCcceEEEE
Confidence 48999999999 787765
Done!