Query 024082
Match_columns 272
No_of_seqs 73 out of 75
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 17:54:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f9z_C Protein (chemotaxis met 96.4 0.012 4.2E-07 50.0 8.8 132 62-225 3-148 (159)
2 2gpi_A Conserved hypothetical 35.2 17 0.00059 28.1 1.9 47 2-48 25-78 (91)
3 4dh4_A MIF; trimer, isomerase; 27.9 18 0.0006 27.5 0.9 45 130-189 56-100 (114)
4 1otf_A 4-oxalocrotonate tautom 24.1 21 0.00073 23.5 0.6 39 134-187 3-41 (62)
5 2ckc_A Chromodomain-helicase-D 23.6 42 0.0014 25.7 2.2 19 21-39 44-62 (80)
6 2xcz_A Possible ATLS1-like lig 22.3 40 0.0014 25.3 1.9 44 131-189 57-100 (115)
7 2opa_A Probable tautomerase YW 21.3 24 0.00083 23.2 0.4 39 134-187 3-41 (61)
8 2x4k_A 4-oxalocrotonate tautom 20.5 26 0.00088 22.9 0.4 40 133-187 5-44 (63)
9 3b64_A Macrophage migration in 18.2 42 0.0014 25.2 1.2 43 131-188 57-99 (112)
10 3abf_A 4-oxalocrotonate tautom 18.1 35 0.0012 22.6 0.7 39 134-187 4-42 (64)
No 1
>2f9z_C Protein (chemotaxis methylation protein); bacterial chemotaxis, signal transduction, receptor deamidas aspartyl phosphatase, protein complex; 2.40A {Thermotoga maritima} SCOP: d.194.1.3
Probab=96.44 E-value=0.012 Score=50.04 Aligned_cols=132 Identities=15% Similarity=0.181 Sum_probs=90.3
Q ss_pred eEEEEeceeeEEec-CC-ceee-eecCCCceeeEEEEEeCCCCceEEEecc---C-------CchhhHHHHHHHHhh-cC
Q 024082 62 KYVYVFQREYATVD-PA-LVDY-VGTDEATTCVGLVIRNRRNRMTSIAHMD---N-------PEIVDIGLCQMLSLV-VD 127 (272)
Q Consensus 62 ~lLYV~QRE~A~t~-P~-~V~i-lGSDdATTChivVlRhtgsGat~laH~D---g-------s~~v~~~v~~ml~~l-~~ 127 (272)
..++|.+.||.++. |. -..+ ||| |+.|+|+++..+.-.|+|+= . ....+.++..|++.+ ..
T Consensus 3 ~~i~v~~Ge~~v~~~p~~i~T~~LGS-----CVav~l~Dp~~~iGGm~H~mLP~~~~~~~~~~rY~d~am~~Li~~m~~~ 77 (159)
T 2f9z_C 3 MKKVIGIGEYAVMKNPGVIVTLGLGS-----CVAVCMRDPVAKVGAMAHVMLPDSGGKTDKPGKYADTAVKTLVEELKKM 77 (159)
T ss_dssp CEEECCTTCEEEEETTCEEEEEEESS-----CEEEEEEETTTTEEEEEEECBSCCSSCCSCGGGBHHHHHHHHHHHHHTT
T ss_pred cEEEEeCCeEEEECCCCEEEEecCcC-----eEEEEEEcCCCCEEEEEEEECCCCCCCCCCcccCHHHHHHHHHHHHHHc
Confidence 45799999999876 55 3566 887 99999999999999999983 1 235678999999886 55
Q ss_pred CCCCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeeeEeccCCceecCCCCCcce
Q 024082 128 HDLDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTLHVLGHNTKRDSQGNAYPI 207 (272)
Q Consensus 128 ~~~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~CV~~lNt~~~~~g~~~Pi 207 (272)
+....+|++.|.||=.=-... .....++......+.|++.. |.+.--=+++..- .
T Consensus 78 Ga~~~~L~aKifGGA~m~~~~-------------~~~IG~rNv~~a~~~L~~~g--I~i~aeD~GG~~g----------R 132 (159)
T 2f9z_C 78 GAKVERLEAKIAGGASMFESK-------------GMNIGARNVEAVKKHLKDFG--IKLLAEDTGGNRA----------R 132 (159)
T ss_dssp TCCGGGCEEEEEECCCCSCCC-------------SSCHHHHHHHHHHHHHHHTT--CCEEEEEECCSSC----------E
T ss_pred CCCHHHEEEEEEeCcccCccc-------------ccChHHHHHHHHHHHHHHCC--CcEEEEeCCCCCC----------c
Confidence 666789999999995532100 03355566666666666644 4443333333222 1
Q ss_pred EEEEEEEecCCeeecccc
Q 024082 208 FHGFLVETCTGSLSPASF 225 (272)
Q Consensus 208 iyGi~VnvkTG~IfpAsF 225 (272)
=+-+++.||++.=-+.
T Consensus 133 --~i~f~~~tG~v~vk~~ 148 (159)
T 2f9z_C 133 --SVEYNIETGKLLVRKV 148 (159)
T ss_dssp --EEEEETTTTEEEEECC
T ss_pred --EEEEECCCCEEEEEEc
Confidence 2556888888765444
No 2
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=35.17 E-value=17 Score=28.13 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=36.7
Q ss_pred eeeCCEeeccCCCCC------CCCCCchhHHHHHHHhC-chHHHhhhhhccCcc
Q 024082 2 IFVGGLPFSTNNSSW------SSSSSQGSDILVALLEH-PVLVSASHSFKSMEE 48 (272)
Q Consensus 2 l~v~G~~v~~~~~~~------~~~~~~~~~ll~~l~~h-P~l~~~a~~l~~~p~ 48 (272)
.+|||.++.|.=|.. ..++....++|++|..| ..|.+.|+.|.....
T Consensus 25 A~V~G~~i~C~Is~e~Le~~~g~~~~~~~~~l~~F~~~R~diEe~Ae~lIe~e~ 78 (91)
T 2gpi_A 25 AQQQGMVIDCYIGQKVLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKLIEQEA 78 (91)
T ss_dssp EEETTEEEEEEEEHHHHHHHHTSCCCSHHHHHHHHHHTHHHHHHHHHHHHHTTC
T ss_pred EEeCCeEEEEEEEHHHHHHHhCccCCCHHHHHHHHHHcchhHHHHHHHHHHccc
Confidence 378999999874432 22356788999999999 899999999987654
No 3
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=27.88 E-value=18 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.056 Sum_probs=35.9
Q ss_pred CCceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeee
Q 024082 130 LDAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTL 189 (272)
Q Consensus 130 ~~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~ 189 (272)
+..-++|+++||...+ ++ +.++..||.-|-+.|...++.+++.-.
T Consensus 56 p~a~v~i~~ig~~~~e-----------~~----~~l~~~i~~~l~~~Lgi~~~riyI~f~ 100 (114)
T 4dh4_A 56 PCAFIRVASIGGITSS-----------TN----CKIAAALSAACERHLGVPKNRIYTTFT 100 (114)
T ss_dssp CCEEEEEEEESCCCHH-----------HH----HHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred CeEEEEEEEEcCCCHH-----------HH----HHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 3567899999987654 22 778999999999999999999988644
No 4
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=24.08 E-value=21 Score=23.51 Aligned_cols=39 Identities=18% Similarity=0.333 Sum_probs=29.0
Q ss_pred eEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEe
Q 024082 134 LDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQ 187 (272)
Q Consensus 134 LevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~ 187 (272)
++|++.+|.+++ +| +.++..|+..|.+.|...++++.+.
T Consensus 3 i~I~~~~grs~e-----------~k----~~l~~~i~~~l~~~lg~p~~~v~v~ 41 (62)
T 1otf_A 3 AQLYIIEGRTDE-----------QK----ETLIRQVSEAMANSLDAPLERVRVL 41 (62)
T ss_dssp EEEEEESCCCHH-----------HH----HHHHHHHHHHHHHHHTCCGGGCEEE
T ss_pred EEEEEcCCCCHH-----------HH----HHHHHHHHHHHHHHhCcCcccEEEE
Confidence 678899998665 22 6678888888888888877766654
No 5
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=23.61 E-value=42 Score=25.71 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.9
Q ss_pred CchhHHHHHHHhCchHHHh
Q 024082 21 SQGSDILVALLEHPVLVSA 39 (272)
Q Consensus 21 ~~~~~ll~~l~~hP~l~~~ 39 (272)
....+|+.||++||.|...
T Consensus 44 P~~KdL~dWLrqhP~y~vD 62 (80)
T 2ckc_A 44 PKNKDLVEWLKLHPTYTVD 62 (80)
T ss_dssp CBHHHHHHHHHHCTTEEES
T ss_pred ccccCHHHHHHHCCCcEEe
Confidence 4689999999999998653
No 6
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=22.28 E-value=40 Score=25.32 Aligned_cols=44 Identities=16% Similarity=0.248 Sum_probs=34.7
Q ss_pred CceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEeee
Q 024082 131 DAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQTL 189 (272)
Q Consensus 131 ~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t~ 189 (272)
..-++|.++||...+ +| +.++..||..|-+.|...++++.+.-.
T Consensus 57 ~~~v~i~~~~g~t~e-----------qk----~~l~~~i~~~l~~~lgi~~~~v~I~~~ 100 (115)
T 2xcz_A 57 TCYVEVKSIGALDGS-----------RT----QEVSELVCGHIEQNLGIPADRIYIGFE 100 (115)
T ss_dssp CEEEEEEESSCCCTT-----------HH----HHHHHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred EEEEEEEEecCCCHH-----------HH----HHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 446899999988766 22 678889999998899999998887643
No 7
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=21.25 E-value=24 Score=23.23 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=28.3
Q ss_pred eEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEe
Q 024082 134 LDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQ 187 (272)
Q Consensus 134 LevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~ 187 (272)
++|++.+|.+++ +| +.++..|+..|.+.|...++.+.+.
T Consensus 3 i~i~~~~grs~e-----------qk----~~l~~~i~~~l~~~lg~~~~~v~V~ 41 (61)
T 2opa_A 3 VTVKMLEGRTDE-----------QK----RNLVEKVTEAVKETTGASEEKIVVF 41 (61)
T ss_dssp EEEEEESCCCHH-----------HH----HHHHHHHHHHHHHHHCCCGGGCEEE
T ss_pred EEEEEcCCCCHH-----------HH----HHHHHHHHHHHHHHhCcCcCeEEEE
Confidence 678899998655 22 6677788888887888777766654
No 8
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=20.48 E-value=26 Score=22.87 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=29.5
Q ss_pred eeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEe
Q 024082 133 ELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQ 187 (272)
Q Consensus 133 rLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~ 187 (272)
-++|++.+|..++ ++ +.++..|+..|.+.|.+-++.+.+.
T Consensus 5 ~i~i~~~~g~s~e-----------~k----~~l~~~l~~~l~~~lg~p~~~v~v~ 44 (63)
T 2x4k_A 5 IVNVKLLEGRSDE-----------QL----KNLVSEVTDAVEKTTGANRQAIHVV 44 (63)
T ss_dssp EEEEEEESCCCHH-----------HH----HHHHHHHHHHHHHHHCCCGGGCEEE
T ss_pred EEEEEEcCCCCHH-----------HH----HHHHHHHHHHHHHHhCcCcccEEEE
Confidence 3688899988655 12 6688888888888888887766554
No 9
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=18.22 E-value=42 Score=25.19 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=33.6
Q ss_pred CceeEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEee
Q 024082 131 DAELDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQT 188 (272)
Q Consensus 131 ~grLevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~t 188 (272)
..-++|.++||...+ +| +.++..||..|-+.|...++++++.-
T Consensus 57 ~~~i~i~~~~g~~~e-----------qk----~~l~~~i~~~l~~~lgi~~~~v~I~~ 99 (112)
T 3b64_A 57 VACVRVEALGGYGPS-----------EP----EKVTSIVTAAITKECGIVADRIFVLY 99 (112)
T ss_dssp CEEEEEECTTCCCTT-----------HH----HHHHHHHHHHHHHHHCCCGGGEEEEE
T ss_pred EEEEEEEEcCCCCHH-----------HH----HHHHHHHHHHHHHHhCcCcceEEEEE
Confidence 446788888888765 22 67888899988888999999888753
No 10
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=18.12 E-value=35 Score=22.61 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=28.0
Q ss_pred eEEEEecccCCCCCCCCCCccccccccCCCCCCHHHHHHHHHHHHcccceEEEe
Q 024082 134 LDVYLIGGFDDASPNHANGTTISECYSDMDGYSLPLCRKLVDTLQRRQEKFHVQ 187 (272)
Q Consensus 134 LevhLVGGF~D~~~~~~~~~~~s~~~~~~~g~S~~L~~~LL~~f~k~~~~~hL~ 187 (272)
++|++.+|.+++ +| +.++..|+..|-+.+.+.++.+.+.
T Consensus 4 i~i~~~~g~s~e-----------qk----~~l~~~lt~~l~~~lg~~~~~v~V~ 42 (64)
T 3abf_A 4 LKVTLLEGRPPE-----------KK----RELVRRLTEMASRLLGEPYEEVRVI 42 (64)
T ss_dssp EEEEEETTCCHH-----------HH----HHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred EEEEECCCCCHH-----------HH----HHHHHHHHHHHHHHhCCCcccEEEE
Confidence 688888887665 12 5677778877777788877776654
Done!