Query 024086
Match_columns 272
No_of_seqs 109 out of 1178
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 08:51:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024086.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024086hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 1.2E-49 2.7E-54 353.7 24.4 241 1-244 67-311 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 1.1E-48 2.4E-53 342.4 23.9 248 2-252 79-335 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 5.3E-46 1.1E-50 319.8 20.3 202 2-246 60-268 (280)
4 PRK10625 tas putative aldo-ket 100.0 8.5E-45 1.8E-49 327.9 24.7 241 2-242 72-339 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 8E-45 1.7E-49 324.4 23.3 236 2-241 64-317 (317)
6 PRK09912 L-glyceraldehyde 3-ph 100.0 1.9E-44 4.1E-49 325.4 24.2 236 7-244 88-335 (346)
7 PF00248 Aldo_ket_red: Aldo/ke 100.0 1.7E-43 3.6E-48 310.9 19.7 225 2-241 52-282 (283)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 4.3E-42 9.3E-47 302.3 23.8 218 2-240 64-285 (285)
9 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2E-42 4.3E-47 301.9 21.4 200 2-244 48-254 (267)
10 PLN02587 L-galactose dehydroge 100.0 2E-41 4.4E-46 302.1 22.3 222 2-243 66-301 (314)
11 PRK10376 putative oxidoreducta 100.0 2.7E-40 5.9E-45 291.7 23.4 205 7-242 79-288 (290)
12 KOG1577 Aldo/keto reductase fa 100.0 1.2E-40 2.5E-45 286.9 18.3 201 7-246 71-289 (300)
13 PRK14863 bifunctional regulato 100.0 2.8E-40 6.1E-45 291.5 19.0 224 2-252 65-291 (292)
14 COG4989 Predicted oxidoreducta 100.0 1.2E-39 2.7E-44 270.1 18.6 217 6-245 72-296 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.6E-39 5.7E-44 283.2 20.4 202 2-246 60-266 (275)
16 COG1453 Predicted oxidoreducta 100.0 2.3E-35 5.1E-40 257.1 16.6 206 1-243 68-286 (391)
17 KOG1576 Predicted oxidoreducta 100.0 4.8E-34 1E-38 238.6 18.6 214 2-231 89-310 (342)
18 KOG3023 Glutamate-cysteine lig 97.9 3.3E-05 7.1E-10 64.8 6.0 70 67-137 156-227 (285)
19 cd03174 DRE_TIM_metallolyase D 86.1 12 0.00025 32.1 10.8 106 30-137 15-135 (265)
20 PRK07535 methyltetrahydrofolat 83.2 28 0.0006 30.3 11.7 135 32-194 23-157 (261)
21 cd00739 DHPS DHPS subgroup of 82.2 25 0.00054 30.5 11.1 101 31-137 21-127 (257)
22 PRK04452 acetyl-CoA decarbonyl 81.0 31 0.00066 31.0 11.3 94 44-140 85-185 (319)
23 PRK10558 alpha-dehydro-beta-de 80.2 22 0.00047 30.8 9.9 68 72-140 9-79 (256)
24 cd00423 Pterin_binding Pterin 78.4 40 0.00087 29.1 11.1 102 31-138 21-128 (258)
25 TIGR00190 thiC thiamine biosyn 77.4 21 0.00046 32.9 9.2 86 29-134 135-220 (423)
26 cd00308 enolase_like Enolase-s 75.3 36 0.00079 28.6 9.9 87 52-142 120-208 (229)
27 PRK13958 N-(5'-phosphoribosyl) 73.2 10 0.00022 31.7 5.8 74 32-112 10-84 (207)
28 COG2069 CdhD CO dehydrogenase/ 73.1 42 0.0009 29.8 9.5 93 44-141 160-262 (403)
29 PRK13352 thiamine biosynthesis 72.4 33 0.00073 31.8 9.2 90 30-143 139-228 (431)
30 TIGR03239 GarL 2-dehydro-3-deo 72.4 44 0.00095 28.8 9.7 66 74-140 4-72 (249)
31 PRK10128 2-keto-3-deoxy-L-rham 71.6 57 0.0012 28.5 10.2 67 73-140 9-78 (267)
32 PRK14457 ribosomal RNA large s 69.6 88 0.0019 28.4 14.7 137 6-143 98-266 (345)
33 TIGR01928 menC_lowGC/arch o-su 68.9 48 0.001 29.6 9.5 87 53-143 199-287 (324)
34 PRK01222 N-(5'-phosphoribosyl) 67.4 14 0.00031 30.9 5.5 75 32-113 12-87 (210)
35 COG0135 TrpF Phosphoribosylant 67.4 28 0.00061 29.2 7.1 86 32-130 11-97 (208)
36 cd03322 rpsA The starvation se 66.7 31 0.00067 31.4 8.0 71 69-139 202-274 (361)
37 cd03315 MLE_like Muconate lact 66.7 65 0.0014 27.7 9.7 74 70-143 169-244 (265)
38 COG0422 ThiC Thiamine biosynth 66.0 76 0.0016 29.2 9.9 87 29-135 136-222 (432)
39 PF07021 MetW: Methionine bios 65.6 15 0.00033 30.4 5.1 112 30-143 43-172 (193)
40 cd03318 MLE Muconate Lactonizi 65.5 26 0.00056 31.8 7.2 74 69-142 227-302 (365)
41 cd00740 MeTr MeTr subgroup of 64.9 92 0.002 26.9 12.3 109 30-142 22-131 (252)
42 COG2185 Sbm Methylmalonyl-CoA 64.4 37 0.00081 26.7 6.8 56 84-143 19-76 (143)
43 PRK00730 rnpA ribonuclease P; 63.9 40 0.00087 26.3 6.9 48 31-78 60-109 (138)
44 TIGR01290 nifB nitrogenase cof 63.0 1.4E+02 0.003 28.2 12.2 84 29-117 58-147 (442)
45 cd03323 D-glucarate_dehydratas 62.9 37 0.00081 31.3 7.8 73 70-142 250-324 (395)
46 TIGR02534 mucon_cyclo muconate 62.2 28 0.00061 31.7 6.8 73 70-142 227-301 (368)
47 PRK15072 bifunctional D-altron 62.1 59 0.0013 30.1 9.0 71 69-139 245-317 (404)
48 COG0282 ackA Acetate kinase [E 61.9 40 0.00087 31.0 7.5 120 74-224 164-291 (396)
49 cd03316 MR_like Mandelate race 59.4 38 0.00082 30.5 7.2 69 70-138 229-299 (357)
50 cd03314 MAL Methylaspartate am 59.2 1.4E+02 0.0031 27.3 10.8 84 55-138 230-320 (369)
51 cd03327 MR_like_2 Mandelate ra 59.2 40 0.00086 30.4 7.2 69 69-137 210-280 (341)
52 PRK14017 galactonate dehydrata 58.9 50 0.0011 30.2 7.9 70 70-139 217-288 (382)
53 PF00809 Pterin_bind: Pterin b 58.8 34 0.00074 28.5 6.3 91 43-139 27-125 (210)
54 TIGR01502 B_methylAsp_ase meth 58.8 57 0.0012 30.4 8.2 70 70-139 281-357 (408)
55 cd03325 D-galactonate_dehydrat 58.5 58 0.0013 29.5 8.2 69 69-137 215-285 (352)
56 TIGR02311 HpaI 2,4-dihydroxyhe 57.9 1.2E+02 0.0027 26.0 9.8 65 73-138 3-70 (249)
57 COG1140 NarY Nitrate reductase 57.1 6 0.00013 36.0 1.4 57 76-132 260-317 (513)
58 PF14871 GHL6: Hypothetical gl 56.2 20 0.00044 27.7 4.1 26 115-140 42-67 (132)
59 PRK09427 bifunctional indole-3 54.8 49 0.0011 31.3 7.2 73 32-113 266-339 (454)
60 PF13378 MR_MLE_C: Enolase C-t 54.5 18 0.0004 26.5 3.6 55 87-142 2-57 (111)
61 PRK13803 bifunctional phosphor 54.1 1E+02 0.0022 30.4 9.5 77 32-113 12-89 (610)
62 TIGR02082 metH 5-methyltetrahy 53.2 3.1E+02 0.0068 29.4 13.3 106 32-142 366-476 (1178)
63 PRK09856 fructoselysine 3-epim 52.9 94 0.002 26.6 8.3 51 120-189 93-143 (275)
64 cd03319 L-Ala-DL-Glu_epimerase 52.5 51 0.0011 29.2 6.7 73 70-142 217-291 (316)
65 PRK02901 O-succinylbenzoate sy 51.9 1.8E+02 0.0039 26.1 11.2 72 70-143 173-245 (327)
66 PLN02363 phosphoribosylanthran 51.7 72 0.0016 27.7 7.2 76 32-113 56-132 (256)
67 PRK10200 putative racemase; Pr 50.5 75 0.0016 26.9 7.1 65 32-97 15-91 (230)
68 COG0820 Predicted Fe-S-cluster 50.4 1.2E+02 0.0026 27.6 8.5 95 6-100 98-207 (349)
69 TIGR00035 asp_race aspartate r 50.4 63 0.0014 27.2 6.6 63 32-95 15-89 (229)
70 smart00642 Aamy Alpha-amylase 50.3 27 0.00059 28.0 4.2 23 119-141 72-94 (166)
71 PRK09490 metH B12-dependent me 50.2 3.5E+02 0.0077 29.2 13.1 130 32-190 382-518 (1229)
72 cd07943 DRE_TIM_HOA 4-hydroxy- 50.0 1.4E+02 0.003 25.7 8.9 105 30-136 18-131 (263)
73 TIGR01228 hutU urocanate hydra 49.8 43 0.00093 31.8 5.8 80 8-101 157-245 (545)
74 COG4130 Predicted sugar epimer 49.6 1.1E+02 0.0024 25.9 7.6 80 91-189 50-136 (272)
75 PRK14466 ribosomal RNA large s 49.4 97 0.0021 28.2 7.9 92 7-101 101-204 (345)
76 TIGR03597 GTPase_YqeH ribosome 49.0 1E+02 0.0022 28.0 8.2 79 7-93 90-168 (360)
77 PRK05414 urocanate hydratase; 48.8 46 0.00099 31.8 5.8 81 7-101 165-254 (556)
78 PRK13796 GTPase YqeH; Provisio 48.5 1E+02 0.0022 28.2 8.1 80 7-94 96-175 (365)
79 TIGR01496 DHPS dihydropteroate 48.1 1.8E+02 0.004 25.1 12.5 99 31-137 20-125 (257)
80 COG2102 Predicted ATPases of P 47.9 58 0.0013 27.6 5.8 98 66-191 75-176 (223)
81 PRK05692 hydroxymethylglutaryl 47.0 93 0.002 27.4 7.3 103 30-135 22-138 (287)
82 TIGR00381 cdhD CO dehydrogenas 46.7 2.4E+02 0.0052 26.1 12.2 105 34-143 128-253 (389)
83 COG1121 ZnuC ABC-type Mn/Zn tr 46.4 1E+02 0.0023 26.7 7.3 68 30-100 111-207 (254)
84 PRK14461 ribosomal RNA large s 46.3 1.3E+02 0.0028 27.7 8.2 87 54-141 231-352 (371)
85 PLN02444 HMP-P synthase 45.1 1.6E+02 0.0035 28.6 8.8 89 29-143 295-383 (642)
86 PRK06015 keto-hydroxyglutarate 44.6 51 0.0011 27.5 5.0 88 32-135 14-102 (201)
87 TIGR03822 AblA_like_2 lysine-2 44.4 2.3E+02 0.005 25.3 13.0 109 32-143 120-240 (321)
88 PF01876 RNase_P_p30: RNase P 43.8 51 0.0011 25.8 4.8 60 81-140 24-85 (150)
89 cd07944 DRE_TIM_HOA_like 4-hyd 43.3 2.2E+02 0.0048 24.7 9.8 104 30-136 16-128 (266)
90 COG4555 NatA ABC-type Na+ tran 43.1 1.2E+02 0.0027 25.7 6.9 71 29-101 103-202 (245)
91 PRK09284 thiamine biosynthesis 42.2 2E+02 0.0044 27.9 9.0 88 30-143 291-378 (607)
92 TIGR01182 eda Entner-Doudoroff 42.2 58 0.0013 27.2 5.0 88 32-135 18-106 (204)
93 COG2949 SanA Uncharacterized m 42.1 2.1E+02 0.0046 24.1 10.9 98 34-137 76-180 (235)
94 TIGR00735 hisF imidazoleglycer 42.0 1.8E+02 0.0039 24.9 8.3 90 41-133 161-253 (254)
95 PRK08392 hypothetical protein; 41.8 1.3E+02 0.0029 25.0 7.2 89 42-133 81-177 (215)
96 cd03317 NAAAR N-acylamino acid 41.8 1E+02 0.0022 27.7 7.1 73 70-142 217-291 (354)
97 PRK14461 ribosomal RNA large s 41.6 1.5E+02 0.0034 27.2 8.0 95 7-101 105-224 (371)
98 TIGR02026 BchE magnesium-proto 41.4 2.8E+02 0.0062 26.4 10.3 101 31-135 222-341 (497)
99 PHA02128 hypothetical protein 41.0 72 0.0016 23.7 4.7 70 67-136 60-150 (151)
100 TIGR02398 gluc_glyc_Psyn gluco 40.8 2.8E+02 0.006 26.6 9.9 100 37-142 272-393 (487)
101 KOG0059 Lipid exporter ABCA1 a 40.5 1.4E+02 0.003 30.8 8.4 72 29-102 668-768 (885)
102 TIGR02127 pyrF_sub2 orotidine 40.3 2.5E+02 0.0054 24.4 12.7 98 32-131 35-141 (261)
103 TIGR01927 menC_gamma/gm+ o-suc 40.3 1.7E+02 0.0036 26.0 8.0 73 71-143 196-270 (307)
104 PRK15440 L-rhamnonate dehydrat 39.8 1.4E+02 0.0029 27.7 7.5 68 69-136 247-318 (394)
105 PRK14465 ribosomal RNA large s 38.7 3E+02 0.0066 25.0 14.4 94 7-100 103-207 (342)
106 TIGR00048 radical SAM enzyme, 38.7 89 0.0019 28.5 6.1 88 54-141 218-333 (355)
107 PF11020 DUF2610: Domain of un 38.7 71 0.0015 22.4 4.1 27 170-196 47-73 (82)
108 PF11242 DUF2774: Protein of u 38.6 43 0.00093 22.2 2.9 22 179-200 15-36 (63)
109 PRK05339 PEP synthetase regula 38.4 67 0.0015 28.1 4.9 76 36-140 18-94 (269)
110 PF07994 NAD_binding_5: Myo-in 38.3 81 0.0017 28.0 5.5 144 32-218 130-283 (295)
111 cd03320 OSBS o-Succinylbenzoat 37.7 1.2E+02 0.0027 26.0 6.6 73 69-142 166-239 (263)
112 COG2987 HutU Urocanate hydrata 37.6 87 0.0019 29.5 5.7 57 44-107 204-261 (561)
113 PRK07945 hypothetical protein; 37.6 3E+02 0.0066 24.7 9.3 36 49-86 191-226 (335)
114 PF09989 DUF2229: CoA enzyme a 37.0 1E+02 0.0022 26.0 5.8 34 103-136 183-218 (221)
115 TIGR03278 methan_mark_10 putat 36.9 3.5E+02 0.0076 25.2 10.4 111 30-143 53-179 (404)
116 PF00072 Response_reg: Respons 36.8 1.2E+02 0.0026 21.3 5.6 62 48-112 40-103 (112)
117 cd03324 rTSbeta_L-fuconate_deh 36.4 1.6E+02 0.0034 27.5 7.5 69 69-137 279-352 (415)
118 COG0820 Predicted Fe-S-cluster 36.4 1.7E+02 0.0036 26.7 7.3 106 32-140 194-329 (349)
119 PF01081 Aldolase: KDPG and KH 35.9 55 0.0012 27.2 3.9 46 83-135 60-106 (196)
120 TIGR03217 4OH_2_O_val_ald 4-hy 35.6 3.3E+02 0.0072 24.5 9.7 105 29-136 19-133 (333)
121 PRK14467 ribosomal RNA large s 35.4 3.5E+02 0.0075 24.6 13.7 136 7-143 97-263 (348)
122 smart00052 EAL Putative diguan 35.2 2.1E+02 0.0046 23.4 7.6 67 67-136 133-209 (241)
123 cd03321 mandelate_racemase Man 35.2 1.3E+02 0.0028 27.2 6.6 67 70-136 226-294 (355)
124 COG0218 Predicted GTPase [Gene 35.0 1.6E+02 0.0034 24.6 6.4 67 2-79 130-198 (200)
125 PRK09613 thiH thiamine biosynt 34.4 4.2E+02 0.009 25.3 11.0 110 29-140 113-242 (469)
126 PRK14465 ribosomal RNA large s 34.2 2.7E+02 0.0059 25.3 8.4 88 54-141 215-329 (342)
127 PRK08195 4-hyroxy-2-oxovalerat 33.8 3.6E+02 0.0078 24.3 9.4 104 29-136 20-134 (337)
128 PF07287 DUF1446: Protein of u 33.8 1.3E+02 0.0029 27.5 6.4 90 69-190 11-100 (362)
129 PF03279 Lip_A_acyltrans: Bact 33.4 64 0.0014 28.2 4.2 108 30-138 66-179 (295)
130 PRK01045 ispH 4-hydroxy-3-meth 33.3 2.6E+02 0.0057 24.9 7.9 108 80-222 156-275 (298)
131 PRK00077 eno enolase; Provisio 33.2 4.1E+02 0.0089 24.8 10.5 96 31-135 261-361 (425)
132 PF00682 HMGL-like: HMGL-like 32.8 2.3E+02 0.005 23.7 7.4 98 30-133 10-124 (237)
133 PRK04165 acetyl-CoA decarbonyl 32.3 4.4E+02 0.0096 25.0 10.2 103 30-138 101-209 (450)
134 cd00419 Ferrochelatase_C Ferro 32.3 1.9E+02 0.0041 22.2 6.2 49 32-80 39-90 (135)
135 PRK14466 ribosomal RNA large s 32.1 3.7E+02 0.0081 24.4 8.9 88 54-141 210-325 (345)
136 PRK10550 tRNA-dihydrouridine s 32.1 2.4E+02 0.0052 25.2 7.6 90 10-112 133-226 (312)
137 PF00697 PRAI: N-(5'phosphorib 31.8 52 0.0011 27.1 3.2 67 43-113 14-81 (197)
138 PRK14468 ribosomal RNA large s 31.7 3.9E+02 0.0085 24.2 14.9 94 7-100 91-198 (343)
139 TIGR03247 glucar-dehydr glucar 31.6 3E+02 0.0065 25.9 8.5 70 70-139 268-338 (441)
140 COG2055 Malate/L-lactate dehyd 31.5 2.4E+02 0.0051 25.8 7.4 89 30-136 5-114 (349)
141 PRK03031 rnpA ribonuclease P; 31.4 2.3E+02 0.0049 21.4 6.7 50 30-79 61-114 (122)
142 PLN00191 enolase 31.3 3.7E+02 0.0079 25.5 9.0 97 31-136 295-394 (457)
143 cd07939 DRE_TIM_NifV Streptomy 31.2 3.4E+02 0.0073 23.2 9.8 97 30-134 16-127 (259)
144 PF13167 GTP-bdg_N: GTP-bindin 31.0 31 0.00068 25.1 1.5 68 174-243 7-81 (95)
145 PLN02428 lipoic acid synthase 30.9 4.1E+02 0.0089 24.2 8.9 76 65-141 229-325 (349)
146 PRK12360 4-hydroxy-3-methylbut 30.9 2.9E+02 0.0063 24.3 7.8 107 80-222 157-274 (281)
147 TIGR00542 hxl6Piso_put hexulos 30.8 2.8E+02 0.0061 23.8 7.8 51 120-189 97-147 (279)
148 PRK07920 lipid A biosynthesis 30.8 78 0.0017 27.8 4.3 60 30-90 51-116 (298)
149 PRK02714 O-succinylbenzoate sy 30.7 2.5E+02 0.0054 25.0 7.6 86 52-143 192-278 (320)
150 PF01175 Urocanase: Urocanase; 30.6 1.4E+02 0.0029 28.7 5.9 81 7-101 155-244 (546)
151 cd08583 PI-PLCc_GDPD_SF_unchar 30.6 3.2E+02 0.007 22.8 8.9 18 120-137 195-212 (237)
152 cd02930 DCR_FMN 2,4-dienoyl-Co 30.4 2.4E+02 0.0052 25.5 7.5 38 72-109 267-305 (353)
153 PRK14454 ribosomal RNA large s 30.2 4.2E+02 0.009 24.0 14.3 135 7-143 99-262 (342)
154 cd01320 ADA Adenosine deaminas 30.2 2.7E+02 0.0059 24.5 7.8 108 31-138 66-194 (325)
155 COG2089 SpsE Sialic acid synth 30.0 2.7E+02 0.0058 25.2 7.3 61 32-96 158-220 (347)
156 COG1151 6Fe-6S prismane cluste 29.8 3.4E+02 0.0075 26.4 8.5 51 34-87 360-413 (576)
157 PRK04390 rnpA ribonuclease P; 29.8 2.4E+02 0.0053 21.2 7.0 48 31-78 59-109 (120)
158 COG4152 ABC-type uncharacteriz 29.8 3.6E+02 0.0078 23.7 7.8 71 29-101 100-199 (300)
159 cd03328 MR_like_3 Mandelate ra 29.6 2E+02 0.0043 26.0 6.8 69 69-137 221-293 (352)
160 PRK06552 keto-hydroxyglutarate 29.6 1.2E+02 0.0027 25.4 5.1 60 68-135 50-114 (213)
161 PLN02746 hydroxymethylglutaryl 29.3 4.4E+02 0.0096 24.0 10.4 100 30-135 64-180 (347)
162 PTZ00081 enolase; Provisional 29.0 5E+02 0.011 24.5 9.9 97 31-136 281-382 (439)
163 TIGR01060 eno phosphopyruvate 28.9 4.8E+02 0.01 24.3 10.2 98 32-138 263-366 (425)
164 TIGR01428 HAD_type_II 2-haloal 28.6 1.1E+02 0.0025 24.5 4.7 64 36-101 61-128 (198)
165 COG4626 Phage terminase-like p 28.4 2.1E+02 0.0046 27.7 6.9 73 64-139 410-485 (546)
166 PRK08419 lipid A biosynthesis 27.9 98 0.0021 27.1 4.5 102 31-135 59-168 (298)
167 PRK08084 DNA replication initi 27.7 1.8E+02 0.0038 24.6 5.8 45 51-95 97-145 (235)
168 PRK14459 ribosomal RNA large s 27.6 3.8E+02 0.0082 24.7 8.2 88 54-141 241-359 (373)
169 PRK07328 histidinol-phosphatas 27.5 3.4E+02 0.0073 23.3 7.7 50 37-87 94-160 (269)
170 cd08556 GDPD Glycerophosphodie 27.4 3E+02 0.0064 21.6 7.0 19 120-138 150-168 (189)
171 PRK04930 glutathione-regulated 27.3 3.2E+02 0.007 22.3 7.1 33 30-62 126-158 (184)
172 TIGR03822 AblA_like_2 lysine-2 27.1 3.1E+02 0.0067 24.5 7.5 98 32-132 151-260 (321)
173 TIGR00216 ispH_lytB (E)-4-hydr 27.0 3.5E+02 0.0075 23.8 7.6 116 71-222 145-273 (280)
174 PF00762 Ferrochelatase: Ferro 26.7 2.1E+02 0.0046 25.5 6.4 88 32-140 205-298 (316)
175 PF02679 ComA: (2R)-phospho-3- 26.7 1.8E+02 0.0038 25.1 5.5 98 37-135 24-131 (244)
176 cd03329 MR_like_4 Mandelate ra 26.7 3.2E+02 0.0069 24.8 7.7 68 70-137 229-299 (368)
177 CHL00040 rbcL ribulose-1,5-bis 26.4 5.7E+02 0.012 24.4 9.3 107 30-141 179-299 (475)
178 cd08562 GDPD_EcUgpQ_like Glyce 26.1 3.7E+02 0.0081 22.1 7.6 19 120-138 189-207 (229)
179 COG0159 TrpA Tryptophan syntha 26.0 4.5E+02 0.0097 23.0 10.7 120 34-191 2-150 (265)
180 PF03618 Kinase-PPPase: Kinase 25.9 1.4E+02 0.003 25.9 4.8 73 34-135 10-82 (255)
181 cd00405 PRAI Phosphoribosylant 25.9 1.4E+02 0.003 24.5 4.8 39 52-94 74-112 (203)
182 TIGR03821 AblA_like_1 lysine-2 25.9 4.8E+02 0.01 23.3 11.2 109 32-143 126-246 (321)
183 cd03326 MR_like_1 Mandelate ra 25.8 3.2E+02 0.0069 25.1 7.5 65 69-133 244-314 (385)
184 cd04438 DEP_dishevelled DEP (D 25.7 38 0.00081 24.0 1.1 37 48-85 32-68 (84)
185 PRK09856 fructoselysine 3-epim 25.6 3.6E+02 0.0077 22.9 7.5 52 91-142 14-72 (275)
186 PRK08609 hypothetical protein; 25.5 2.7E+02 0.0059 27.2 7.3 35 50-86 430-464 (570)
187 PLN02449 ferrochelatase 25.3 4.7E+02 0.01 25.1 8.6 67 32-98 298-373 (485)
188 PRK15005 universal stress prot 25.1 2.9E+02 0.0064 20.5 6.5 27 113-139 90-116 (144)
189 COG2022 ThiG Uncharacterized e 25.0 3.2E+02 0.007 23.5 6.6 56 28-83 77-133 (262)
190 cd00668 Ile_Leu_Val_MetRS_core 25.0 1.1E+02 0.0024 27.0 4.3 48 33-84 81-131 (312)
191 PF05368 NmrA: NmrA-like famil 24.9 3.5E+02 0.0075 22.3 7.1 94 38-142 12-106 (233)
192 PRK14470 ribosomal RNA large s 24.8 5.2E+02 0.011 23.3 9.5 109 7-116 95-215 (336)
193 PF10171 DUF2366: Uncharacteri 24.6 1.5E+02 0.0032 24.2 4.4 52 37-91 66-117 (173)
194 PRK15456 universal stress prot 24.6 3.1E+02 0.0066 20.6 7.5 35 108-142 83-117 (142)
195 PRK06424 transcription factor; 24.5 2.1E+02 0.0046 22.4 5.2 27 175-201 84-110 (144)
196 cd04734 OYE_like_3_FMN Old yel 24.4 4.3E+02 0.0093 23.8 8.0 40 70-109 274-314 (343)
197 cd00248 Mth938-like Mth938-lik 24.4 1.9E+02 0.0041 21.3 4.8 52 88-139 37-88 (109)
198 PRK04820 rnpA ribonuclease P; 24.2 3.5E+02 0.0077 21.2 7.0 49 31-79 63-114 (145)
199 cd03770 SR_TndX_transposase Se 24.2 1.4E+02 0.0031 22.9 4.3 40 40-79 57-97 (140)
200 COG0673 MviM Predicted dehydro 24.2 1.2E+02 0.0026 26.7 4.4 66 179-244 42-117 (342)
201 PRK11024 colicin uptake protei 24.1 1.7E+02 0.0037 22.5 4.7 53 31-88 85-137 (141)
202 COG1751 Uncharacterized conser 24.1 3.8E+02 0.0082 21.5 7.5 87 55-142 2-95 (186)
203 cd00814 MetRS_core catalytic c 24.1 1.1E+02 0.0024 27.2 4.1 47 33-82 68-114 (319)
204 PF03599 CdhD: CO dehydrogenas 23.9 5.7E+02 0.012 23.7 8.6 85 51-140 69-154 (386)
205 PRK01313 rnpA ribonuclease P; 23.9 3.4E+02 0.0073 20.8 6.8 48 31-78 61-113 (129)
206 PRK11893 methionyl-tRNA synthe 23.8 1.1E+02 0.0024 29.1 4.2 49 33-84 69-117 (511)
207 TIGR03471 HpnJ hopanoid biosyn 23.7 6.2E+02 0.013 23.8 12.1 102 30-136 226-342 (472)
208 PRK03459 rnpA ribonuclease P; 23.7 3.3E+02 0.0071 20.6 6.7 48 32-79 63-114 (122)
209 PRK05458 guanosine 5'-monophos 23.7 5.4E+02 0.012 23.2 9.1 123 4-135 18-145 (326)
210 PRK14463 ribosomal RNA large s 23.7 5.6E+02 0.012 23.3 14.6 92 7-100 101-203 (349)
211 TIGR03471 HpnJ hopanoid biosyn 23.6 88 0.0019 29.5 3.5 25 71-95 288-313 (472)
212 PRK11267 biopolymer transport 23.5 2E+02 0.0043 22.2 5.0 55 30-89 80-134 (141)
213 PF04476 DUF556: Protein of un 23.4 4.3E+02 0.0094 22.6 7.2 109 11-133 53-183 (235)
214 COG0710 AroD 3-dehydroquinate 23.3 4.7E+02 0.01 22.3 8.8 27 30-56 74-100 (231)
215 PF06506 PrpR_N: Propionate ca 23.2 45 0.00097 26.9 1.3 99 36-139 19-134 (176)
216 TIGR03849 arch_ComA phosphosul 23.1 2.9E+02 0.0062 23.7 6.2 97 37-135 11-118 (237)
217 COG0761 lytB 4-Hydroxy-3-methy 23.0 2.9E+02 0.0062 24.5 6.2 43 179-222 229-277 (294)
218 PRK14463 ribosomal RNA large s 23.0 5.7E+02 0.012 23.2 8.9 87 55-141 211-325 (349)
219 PRK10551 phage resistance prot 22.9 3.4E+02 0.0074 26.1 7.4 102 32-137 362-474 (518)
220 KOG3380 Actin-related protein 22.9 64 0.0014 25.5 2.0 47 39-85 90-142 (152)
221 cd04449 DEP_DEPDC5-like DEP (D 22.8 34 0.00073 24.0 0.4 23 64-86 47-69 (83)
222 PF02971 FTCD: Formiminotransf 22.4 1.4E+02 0.0031 23.5 3.8 35 105-139 50-90 (145)
223 TIGR02026 BchE magnesium-proto 22.3 1E+02 0.0022 29.5 3.6 17 120-136 356-372 (497)
224 PF02525 Flavodoxin_2: Flavodo 22.3 2.8E+02 0.0061 22.4 6.0 47 31-77 150-196 (199)
225 cd04731 HisF The cyclase subun 22.2 4.7E+02 0.01 21.9 7.6 85 42-129 156-243 (243)
226 cd00671 ArgRS_core catalytic c 22.1 1.8E+02 0.004 24.0 4.8 45 33-82 67-111 (212)
227 PRK14536 cysS cysteinyl-tRNA s 21.9 2.1E+02 0.0045 27.4 5.6 48 33-84 100-147 (490)
228 PRK12558 glutamyl-tRNA synthet 21.9 1.3E+02 0.0028 28.4 4.2 53 30-88 47-99 (445)
229 cd07948 DRE_TIM_HCS Saccharomy 21.9 5.2E+02 0.011 22.3 9.5 99 30-136 18-131 (262)
230 TIGR02402 trehalose_TreZ malto 21.7 1.4E+02 0.0031 28.9 4.5 23 119-141 162-184 (542)
231 PF14502 HTH_41: Helix-turn-he 21.7 84 0.0018 19.8 1.9 28 178-205 7-36 (48)
232 TIGR00048 radical SAM enzyme, 21.6 6.2E+02 0.013 23.0 14.5 95 6-100 102-210 (355)
233 PRK00260 cysS cysteinyl-tRNA s 21.6 1.9E+02 0.0041 27.4 5.3 47 33-83 90-136 (463)
234 PRK01492 rnpA ribonuclease P; 21.5 3.6E+02 0.0078 20.3 6.8 46 31-76 61-113 (118)
235 TIGR01990 bPGM beta-phosphoglu 21.5 2.4E+02 0.0052 22.1 5.3 67 65-131 88-156 (185)
236 PF09639 YjcQ: YjcQ protein; 21.5 1.3E+02 0.0029 21.3 3.3 24 67-90 25-48 (88)
237 PRK07027 cobalamin biosynthesi 21.2 2E+02 0.0044 21.8 4.5 62 30-98 13-74 (126)
238 PF07027 DUF1318: Protein of u 21.1 2.1E+02 0.0045 20.8 4.2 30 171-200 44-73 (95)
239 TIGR03070 couple_hipB transcri 21.1 92 0.002 19.1 2.2 23 178-200 5-27 (58)
240 PF08418 Pol_alpha_B_N: DNA po 21.0 98 0.0021 26.5 3.0 50 174-224 9-61 (253)
241 PF05913 DUF871: Bacterial pro 20.9 1.5E+02 0.0032 27.1 4.2 165 75-270 106-294 (357)
242 COG0135 TrpF Phosphoribosylant 20.8 1.4E+02 0.003 25.1 3.7 35 50-91 74-111 (208)
243 PF01964 ThiC: ThiC family; I 20.8 42 0.00091 31.0 0.7 88 29-136 134-221 (420)
244 TIGR02660 nifV_homocitr homoci 20.5 6.5E+02 0.014 22.9 9.1 97 30-134 19-130 (365)
245 cd00019 AP2Ec AP endonuclease 20.5 4.6E+02 0.01 22.4 7.2 16 120-135 88-103 (279)
246 PRK06294 coproporphyrinogen II 20.4 1.9E+02 0.0041 26.4 4.9 27 31-58 167-193 (370)
247 smart00857 Resolvase Resolvase 20.4 2.8E+02 0.006 21.0 5.3 43 38-80 52-95 (148)
248 PRK10508 hypothetical protein; 20.2 2.4E+02 0.0052 25.4 5.5 43 30-77 285-327 (333)
249 PRK06582 coproporphyrinogen II 20.2 1.7E+02 0.0038 26.9 4.6 29 30-59 173-201 (390)
250 PRK09058 coproporphyrinogen II 20.2 1.7E+02 0.0038 27.5 4.7 29 30-59 226-254 (449)
251 cd00338 Ser_Recombinase Serine 20.2 2E+02 0.0044 21.3 4.4 50 37-87 51-101 (137)
252 PF01402 RHH_1: Ribbon-helix-h 20.1 1.9E+02 0.0041 16.5 3.9 21 175-195 9-29 (39)
253 PRK10060 RNase II stability mo 20.0 7.6E+02 0.017 24.4 9.4 102 32-137 505-618 (663)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=1.2e-49 Score=353.74 Aligned_cols=241 Identities=44% Similarity=0.667 Sum_probs=213.2
Q ss_pred CccccCC-CCcEEEEecccccCCC-CcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 024086 1 MVLKQLP-RKKIQLASKFGVVSMA-PTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVV 78 (272)
Q Consensus 1 ~aL~~~~-R~~~~IstK~~~~~~~-~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~ 78 (272)
+||+.+. |++++|+||+|..... .+....++|+++|+++++.||+|||||||||||+|++|+..+.++++++|.+|++
T Consensus 67 ~~l~~~~~Rd~vvIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~ 146 (316)
T COG0667 67 EALKERGRRDKVVIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVR 146 (316)
T ss_pred HHHhccCCCCeEEEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 4777654 8999999999987642 2221357899999999999999999999999999999999999999999999999
Q ss_pred cCccceeecCCCCHHHHHHHhcC-CCcceeecccCccccchhhhHHHHHHHhCCceeecccccccccCCCCcCCCCCCCc
Q 024086 79 EGKIKYIGLSEASPDTIRRAHAV-HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANS 157 (272)
Q Consensus 79 ~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~~ 157 (272)
+||||+||+|+++.+++.++... .+++++|..||+++++.+.+++++|+++|+++++|+||++|+|+++...+ + .+
T Consensus 147 ~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~--~-~~ 223 (316)
T COG0667 147 EGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG--P-EG 223 (316)
T ss_pred cCCeeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC--c-ch
Confidence 99999999999999999999999 59999999999999887778999999999999999999999999984432 2 12
Q ss_pred cccc-CCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCHHHHHH
Q 024086 158 FLIS-HPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKE 236 (272)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~e~~~~ 236 (272)
.+.. .+.+.....+.....+..+..+|+++|+|++|+||+|++++|.|+++|+|+++++||++|+++++..|++++++.
T Consensus 224 ~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~ 303 (316)
T COG0667 224 SRASELPRFQRELTERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAA 303 (316)
T ss_pred hhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 2222 355556677888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCC
Q 024086 237 ILNFVPIE 244 (272)
Q Consensus 237 l~~~~~~~ 244 (272)
|++.....
T Consensus 304 l~~~~~~~ 311 (316)
T COG0667 304 LDEISAEE 311 (316)
T ss_pred HHHHhhhc
Confidence 99887643
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=1.1e-48 Score=342.40 Aligned_cols=248 Identities=44% Similarity=0.671 Sum_probs=218.4
Q ss_pred ccccC--CCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 024086 2 VLKQL--PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVE 79 (272)
Q Consensus 2 aL~~~--~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~ 79 (272)
||++. +|++++|+||+|..... ......++.++...++.|+++||++||||||+||+|+..++++++++|.+++++
T Consensus 79 ~i~~~~~~R~~vviaTK~~~~~~~--~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~ 156 (336)
T KOG1575|consen 79 FIKSRGWRRDKVVIATKFGFDYGG--ETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQ 156 (336)
T ss_pred HHHhcCCcCCcEEEEEEEeccCCC--cCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhc
Confidence 56663 79999999999987622 224477899999999999999999999999999999999999999999999999
Q ss_pred CccceeecCCCCHHHHHHHhcCCC--cceeecccCccccchh-hhHHHHHHHhCCceeecccccccccCCC-CcCCCCCC
Q 024086 80 GKIKYIGLSEASPDTIRRAHAVHP--ITAVQMEWSLLTRDIE-EEIIPLCRELGIGIVPYSPLGRGLLGGK-AVVESLPA 155 (272)
Q Consensus 80 G~ir~iGvS~~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~~~~~~~~~gv~vi~~~~la~G~L~~~-~~~~~~~~ 155 (272)
|||++||+|+++++++.++....+ +.++|++||++.++.+ .++++.|++.||++++|+||++|+||++ ...++.+.
T Consensus 157 Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~ 236 (336)
T KOG1575|consen 157 GKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRN 236 (336)
T ss_pred CceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccc
Confidence 999999999999999999999876 9999999999999854 5599999999999999999999999998 44455666
Q ss_pred CcccccCCCCCCCch---hhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCHH
Q 024086 156 NSFLISHPRFTGENL---GKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKE 232 (272)
Q Consensus 156 ~~~~~~~~~~~~~~~---~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~e 232 (272)
++.+..++.+.. .+ +.++..++.+.++|+++|+|++|+||+|+++++.|++||+|+++++||++|++++...||++
T Consensus 237 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e 315 (336)
T KOG1575|consen 237 GDKRFQFLGLSP-QTEEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPE 315 (336)
T ss_pred cccccccccccc-ccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHH
Confidence 554433333221 11 55778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCcCCCCCCc
Q 024086 233 DMKEILNFVPIEEVAGDRTY 252 (272)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~ 252 (272)
++..|+++.+.....+.+|.
T Consensus 316 ~~~~l~~~~~~~~~~~~~~~ 335 (336)
T KOG1575|consen 316 EIKELEEIIDKILGFGPRSI 335 (336)
T ss_pred HHHHHHHhhccccCcCCCCC
Confidence 99999999999888777764
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=5.3e-46 Score=319.79 Aligned_cols=202 Identities=32% Similarity=0.503 Sum_probs=181.5
Q ss_pred cccc--CCCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCC--CCHHHHHHHHHHHH
Q 024086 2 VLKQ--LPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS--VPIEDTIGELKMLV 77 (272)
Q Consensus 2 aL~~--~~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~--~~~~e~~~al~~l~ 77 (272)
|+++ .+|+++||+||++.. +.+.+.+.+++++||++||+||||||+||||.+. ....|+|++||+++
T Consensus 60 aI~~s~v~ReelFittKvw~~---------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~ 130 (280)
T COG0656 60 AIKESGVPREELFITTKVWPS---------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELV 130 (280)
T ss_pred HHHhcCCCHHHeEEEeecCCc---------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHH
Confidence 4554 289999999999977 4578999999999999999999999999999763 33689999999999
Q ss_pred HcCccceeecCCCCHHHHHHHhcC--CCcceeecccCccccchhhhHHHHHHHhCCceeecccccccc-cCCCCcCCCCC
Q 024086 78 VEGKIKYIGLSEASPDTIRRAHAV--HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGL-LGGKAVVESLP 154 (272)
Q Consensus 78 ~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~-L~~~~~~~~~~ 154 (272)
++|+||+||||||+.+.++++++. ..+.++|+.||++.++. +++++|+++||.+++|+||++|. +...
T Consensus 131 ~~G~ir~IGVSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~~------- 201 (280)
T COG0656 131 DEGLIRAIGVSNFGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLDN------- 201 (280)
T ss_pred hcCCccEEEeeCCCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCcccccccccC-------
Confidence 999999999999999999999886 45899999999999864 59999999999999999999653 2111
Q ss_pred CCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCHHHH
Q 024086 155 ANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDM 234 (272)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~e~~ 234 (272)
+.+..+|+++|.|++|++|+|+++++ .++|+.+++++|+.+|++++++.||+|||
T Consensus 202 -----------------------~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~~Ipks~~~~ri~eN~~~~~f~Ls~ed~ 256 (280)
T COG0656 202 -----------------------PVLAEIAKKYGKTPAQVALRWHIQRG--VIVIPKSTTPERIRENLAAFDFELSEEDM 256 (280)
T ss_pred -----------------------hHHHHHHHHhCCCHHHHHHHHHHhCC--cEEecCCCCHHHHHHHHhhhcCCCCHHHH
Confidence 27999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHhhCCCCcC
Q 024086 235 KEILNFVPIEEV 246 (272)
Q Consensus 235 ~~l~~~~~~~~~ 246 (272)
+.|+++......
T Consensus 257 ~~i~~l~~~~~~ 268 (280)
T COG0656 257 AAIDALDRGYGR 268 (280)
T ss_pred HHHHhhccccCc
Confidence 999999987643
No 4
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=8.5e-45 Score=327.94 Aligned_cols=241 Identities=30% Similarity=0.368 Sum_probs=193.6
Q ss_pred ccccC-CCCcEEEEecccccCCCCc-c--cccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCC---------------
Q 024086 2 VLKQL-PRKKIQLASKFGVVSMAPT-S--VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP--------------- 62 (272)
Q Consensus 2 aL~~~-~R~~~~IstK~~~~~~~~~-~--~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~--------------- 62 (272)
||++. .|++++|+||++....... . ...++++++|++++++||++||+||||||+||||++
T Consensus 72 aL~~~~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~ 151 (346)
T PRK10625 72 WLAKRGSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDS 151 (346)
T ss_pred HHhhcCCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccc
Confidence 56543 6999999999964221100 0 012578999999999999999999999999999965
Q ss_pred --CCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhc------CCCcceeecccCccccchhhhHHHHHHHhCCcee
Q 024086 63 --SVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHA------VHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIV 134 (272)
Q Consensus 63 --~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~------~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi 134 (272)
..+++++|++|++|+++|||++||+|||+.+.+++++. ...+.++|++||++++..+.+++++|+++||+++
T Consensus 152 ~~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~vi 231 (346)
T PRK10625 152 APAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELL 231 (346)
T ss_pred cCCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEE
Confidence 24578999999999999999999999999988876643 2357899999999998776789999999999999
Q ss_pred ecccccccccCCCCcCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCC
Q 024086 135 PYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTK 214 (272)
Q Consensus 135 ~~~~la~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~ 214 (272)
+|+||++|+|+++......+.+.....++.|............+.+.++|+++|+|++|+||+|++++|.|+++|+|+++
T Consensus 232 a~spL~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~ 311 (346)
T PRK10625 232 AYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATT 311 (346)
T ss_pred EeccccCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCC
Confidence 99999999999873322222211101111121111234566788999999999999999999999999999999999999
Q ss_pred HHHHHHhHhccCCCCCHHHHHHHHhhCC
Q 024086 215 IKNLDENIGSLMMKLTKEDMKEILNFVP 242 (272)
Q Consensus 215 ~~~l~~nl~~~~~~Lt~e~~~~l~~~~~ 242 (272)
++||++|+++++++||+++++.|+++.+
T Consensus 312 ~~~l~en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 312 MEQLKTNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999874
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=8e-45 Score=324.43 Aligned_cols=236 Identities=28% Similarity=0.419 Sum_probs=192.9
Q ss_pred cccc-C-CCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 024086 2 VLKQ-L-PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVE 79 (272)
Q Consensus 2 aL~~-~-~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~ 79 (272)
||++ . +|++++|+||+++..... ...+++++++++++++||++|||||||+|++|||++..+.++++++|++|+++
T Consensus 64 ~l~~~~~~R~~~~iaTK~~~~~~~~--~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~ 141 (317)
T TIGR01293 64 ILKKKGWRRSSYVITTKIFWGGKAE--TERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQ 141 (317)
T ss_pred HHHhcCCCcccEEEEeeeccCCCCC--CCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHc
Confidence 5654 2 699999999986532110 11356899999999999999999999999999999888899999999999999
Q ss_pred CccceeecCCCCHHHHHHHhcC------CCcceeecccCccccch-hhhHHHHHHHhCCceeecccccccccCCCCcCCC
Q 024086 80 GKIKYIGLSEASPDTIRRAHAV------HPITAVQMEWSLLTRDI-EEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVES 152 (272)
Q Consensus 80 G~ir~iGvS~~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~ 152 (272)
||||+||+||++.+++.++... .+++++|+.||+++++. +.+++++|+++||++++|+||++|+|+++....
T Consensus 142 G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~- 220 (317)
T TIGR01293 142 GMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG- 220 (317)
T ss_pred CCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-
Confidence 9999999999999888776432 46789999999999874 568999999999999999999999999874322
Q ss_pred CCCCcccccCCC---CC----CCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhcc
Q 024086 153 LPANSFLISHPR---FT----GENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSL 225 (272)
Q Consensus 153 ~~~~~~~~~~~~---~~----~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~ 225 (272)
.+... +...+. +. .+........++.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++
T Consensus 221 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~ 299 (317)
T TIGR01293 221 IPPYS-RATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSL 299 (317)
T ss_pred CCCcc-cccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHh
Confidence 22211 111110 10 11122345667889999999999999999999999999999999999999999999999
Q ss_pred CC--CCCHHHHHHHHhhC
Q 024086 226 MM--KLTKEDMKEILNFV 241 (272)
Q Consensus 226 ~~--~Lt~e~~~~l~~~~ 241 (272)
+. +||++++++|++++
T Consensus 300 ~~~~~Ls~e~~~~l~~~~ 317 (317)
T TIGR01293 300 QVLPKLSSSIIHEIDSIL 317 (317)
T ss_pred hccCCCCHHHHHHHHhhC
Confidence 86 99999999999763
No 6
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.9e-44 Score=325.42 Aligned_cols=236 Identities=26% Similarity=0.481 Sum_probs=192.5
Q ss_pred CCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceee
Q 024086 7 PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIG 86 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iG 86 (272)
.|+++||+||+|...... ....+.++++|++++++||++||+||||+|+||+|++..++++++++|++|+++|||++||
T Consensus 88 ~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iG 166 (346)
T PRK09912 88 YRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVG 166 (346)
T ss_pred CCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 599999999998532111 1122468999999999999999999999999999998888999999999999999999999
Q ss_pred cCCCCHHHHHHHhcC-----CCcceeecccCccccchh-hhHHHHHHHhCCceeecccccccccCCCCcCCCCCCCcccc
Q 024086 87 LSEASPDTIRRAHAV-----HPITAVQMEWSLLTRDIE-EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLI 160 (272)
Q Consensus 87 vS~~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~~~~~ 160 (272)
+|||++++++++.+. .+++++|++||++++..+ .++++.|+++||++++|+||++|+|+++.... .+.+....
T Consensus 167 vSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~~~ 245 (346)
T PRK09912 167 ISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSRMH 245 (346)
T ss_pred ecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCcccc
Confidence 999999988765442 367899999999998654 46999999999999999999999999873221 12111000
Q ss_pred ----cCCCCCCCc-hhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccC-CCCCHHHH
Q 024086 161 ----SHPRFTGEN-LGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLM-MKLTKEDM 234 (272)
Q Consensus 161 ----~~~~~~~~~-~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~-~~Lt~e~~ 234 (272)
..+.+.... .+......+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++. .+|+++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~ 325 (346)
T PRK09912 246 REGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEEL 325 (346)
T ss_pred ccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHH
Confidence 001111111 134456778899999999999999999999999999999999999999999999984 79999999
Q ss_pred HHHHhhCCCC
Q 024086 235 KEILNFVPIE 244 (272)
Q Consensus 235 ~~l~~~~~~~ 244 (272)
+.|+++++..
T Consensus 326 ~~l~~~~~~~ 335 (346)
T PRK09912 326 AQIDQHIADG 335 (346)
T ss_pred HHHHHhhCcc
Confidence 9999988653
No 7
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=1.7e-43 Score=310.93 Aligned_cols=225 Identities=36% Similarity=0.569 Sum_probs=186.4
Q ss_pred cccc--CCCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCC-HHHHHHHHHHHHH
Q 024086 2 VLKQ--LPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP-IEDTIGELKMLVV 78 (272)
Q Consensus 2 aL~~--~~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~ 78 (272)
||++ .+|++++|+||+... .....+++++.+++++++||++||+||||+|+||+|+.... ..++|++|++|++
T Consensus 52 ~l~~~~~~r~~~~i~tK~~~~----~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~ 127 (283)
T PF00248_consen 52 ALRKSRVPRDDIFISTKVYGD----GKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKK 127 (283)
T ss_dssp HHHHTSSTGGGSEEEEEEESS----SSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccc----ccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccc
Confidence 4554 489999999999221 11234779999999999999999999999999999999888 8999999999999
Q ss_pred cCccceeecCCCCHHHHHHH--hcCCCcceeecccCccccchhhhHHHHHHHhCCceeecccccccccCCCCcC-CCCCC
Q 024086 79 EGKIKYIGLSEASPDTIRRA--HAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVV-ESLPA 155 (272)
Q Consensus 79 ~G~ir~iGvS~~~~~~l~~~--~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~-~~~~~ 155 (272)
+|+||+||||+|+++.++++ ....+++++|+.||++++....+++++|+++||++++|+|+++|+|+++... ...+.
T Consensus 128 ~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~ 207 (283)
T PF00248_consen 128 EGKIRHIGVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPS 207 (283)
T ss_dssp TTSEEEEEEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCccccccccCCCccc
Confidence 99999999999999999999 5567899999999999777778999999999999999999999999877322 11111
Q ss_pred CcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCHHHHH
Q 024086 156 NSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMK 235 (272)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~e~~~ 235 (272)
...+ .........+.++++++|+|++|+||+|+++++.+.+||+|+++++||++|+++++.+||+++++
T Consensus 208 ~~~~-----------~~~~~~~~~l~~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~ 276 (283)
T PF00248_consen 208 RASL-----------RDAQELADALRELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELA 276 (283)
T ss_dssp TSGS-----------STHGGGHHHHHHHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHH
T ss_pred cccc-----------chhhhhhhhhhhhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHH
Confidence 0000 01345677899999999999999999999999999999999999999999999998899999999
Q ss_pred HHHhhC
Q 024086 236 EILNFV 241 (272)
Q Consensus 236 ~l~~~~ 241 (272)
.|+++.
T Consensus 277 ~i~~~~ 282 (283)
T PF00248_consen 277 EIDQIL 282 (283)
T ss_dssp HHHTTH
T ss_pred HHHhhh
Confidence 999874
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=4.3e-42 Score=302.29 Aligned_cols=218 Identities=40% Similarity=0.666 Sum_probs=190.7
Q ss_pred ccccCC-CCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHc
Q 024086 2 VLKQLP-RKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP-IEDTIGELKMLVVE 79 (272)
Q Consensus 2 aL~~~~-R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~ 79 (272)
+|++.. |++++|+||++..... .++++++.+++++++||++||+||||+|+||+|+.... ..++|++|++++++
T Consensus 64 al~~~~~R~~~~i~tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~ 139 (285)
T cd06660 64 ALKERGPREEVFIATKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKE 139 (285)
T ss_pred HHhccCCcCcEEEEeeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHc
Confidence 566543 9999999999865321 13579999999999999999999999999999987765 78999999999999
Q ss_pred CccceeecCCCCHHHHHHHhcC--CCcceeecccCccccchhhhHHHHHHHhCCceeecccccccccCCCCcCCCCCCCc
Q 024086 80 GKIKYIGLSEASPDTIRRAHAV--HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANS 157 (272)
Q Consensus 80 G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~~ 157 (272)
|+||+||+|+|+.+.+.+++.. .+++++|++||++++....+++++|+++||++++|+||++|.++++........
T Consensus 140 G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~-- 217 (285)
T cd06660 140 GKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP-- 217 (285)
T ss_pred CCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC--
Confidence 9999999999999999999888 899999999999999876679999999999999999999999876522111000
Q ss_pred ccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCHHHHHHH
Q 024086 158 FLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEI 237 (272)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~e~~~~l 237 (272)
.......+..++.+++++++|+||+|++++|.++++|+|+++++||++|+++...+||+++++.|
T Consensus 218 ---------------~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l 282 (285)
T cd06660 218 ---------------EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAAL 282 (285)
T ss_pred ---------------hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHH
Confidence 01145679999999999999999999999999999999999999999999999889999999999
Q ss_pred Hhh
Q 024086 238 LNF 240 (272)
Q Consensus 238 ~~~ 240 (272)
+++
T Consensus 283 ~~~ 285 (285)
T cd06660 283 DAL 285 (285)
T ss_pred hhC
Confidence 863
No 9
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2e-42 Score=301.90 Aligned_cols=200 Identities=26% Similarity=0.402 Sum_probs=177.2
Q ss_pred cccc-C-CCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCC--CCHHHHHHHHHHHH
Q 024086 2 VLKQ-L-PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS--VPIEDTIGELKMLV 77 (272)
Q Consensus 2 aL~~-~-~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~--~~~~e~~~al~~l~ 77 (272)
||++ + +|+++||+||++.. +.+++.+++++++||++||+||||+|+||+|++. .+.+++|++|++++
T Consensus 48 al~~~~~~R~~v~i~TK~~~~---------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~ 118 (267)
T PRK11172 48 AIAESGVPRDELFITTKIWID---------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAK 118 (267)
T ss_pred HHHHcCCChhHeEEEEEeCCC---------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 5553 2 69999999998533 3578999999999999999999999999999764 46789999999999
Q ss_pred HcCccceeecCCCCHHHHHHHhcC---CCcceeecccCccccchhhhHHHHHHHhCCceeecccccccccCCCCcCCCCC
Q 024086 78 VEGKIKYIGLSEASPDTIRRAHAV---HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLP 154 (272)
Q Consensus 78 ~~G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~ 154 (272)
++||||+||+|||+.+.++++++. .+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 119 ~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~------- 189 (267)
T PRK11172 119 KQGLTREIGISNFTIALMKQAIAAVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD------- 189 (267)
T ss_pred HCCCCCEEEEccCCHHHHHHHHHhcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC-------
Confidence 999999999999999999888764 3679999999999874 6899999999999999999999854211
Q ss_pred CCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCHHHH
Q 024086 155 ANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDM 234 (272)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~e~~ 234 (272)
+.+.++|+++|+|++|+||+|+++++ .++|+|+++++||++|+++++++||++++
T Consensus 190 -----------------------~~l~~~a~~~~~s~aqval~w~l~~~--~~~i~g~~~~~~l~~n~~~~~~~L~~~~~ 244 (267)
T PRK11172 190 -----------------------PVIARIAAKHNATPAQVILAWAMQLG--YSVIPSSTKRENLASNLLAQDLQLDAEDM 244 (267)
T ss_pred -----------------------HHHHHHHHHhCCCHHHHHHHHHHhCC--CEeecCCCCHHHHHHHHhhcCCCcCHHHH
Confidence 25889999999999999999999998 57999999999999999999999999999
Q ss_pred HHHHhhCCCC
Q 024086 235 KEILNFVPIE 244 (272)
Q Consensus 235 ~~l~~~~~~~ 244 (272)
++|+++.+..
T Consensus 245 ~~i~~~~~~~ 254 (267)
T PRK11172 245 AAIAALDRNG 254 (267)
T ss_pred HHHhhhccCC
Confidence 9999998653
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2e-41 Score=302.14 Aligned_cols=222 Identities=23% Similarity=0.354 Sum_probs=183.5
Q ss_pred cccc--CCCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCC---CCHHHHHHHHHHH
Q 024086 2 VLKQ--LPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS---VPIEDTIGELKML 76 (272)
Q Consensus 2 aL~~--~~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~---~~~~e~~~al~~l 76 (272)
||++ .+|++++|+||++.... ..+++++.+++++++||++||+||||+|+||+|+.. ..++++|++|++|
T Consensus 66 al~~~~~~R~~v~I~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l 140 (314)
T PLN02587 66 ALKALGIPREKYVVSTKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKL 140 (314)
T ss_pred HHHhCCCCcceEEEEeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHH
Confidence 5654 26999999999985321 125689999999999999999999999999999642 3467899999999
Q ss_pred HHcCccceeecCCCCHHHHHHHhcC---C--CcceeecccCccccchhhhHHHHHHHhCCceeecccccccccCCCCcCC
Q 024086 77 VVEGKIKYIGLSEASPDTIRRAHAV---H--PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVE 151 (272)
Q Consensus 77 ~~~G~ir~iGvS~~~~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~ 151 (272)
+++||||+||+|||+++++..+... . .+..+|+.||++++.. .+++++|+++||++++|+||++|+|+++..+.
T Consensus 141 ~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~ 219 (314)
T PLN02587 141 KESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE 219 (314)
T ss_pred HHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC
Confidence 9999999999999999888776543 2 2334578999887654 58999999999999999999999999863111
Q ss_pred CCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccC----C
Q 024086 152 SLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLM----M 227 (272)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~----~ 227 (272)
+.. .........+.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|++++. .
T Consensus 220 -------------~~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~ 285 (314)
T PLN02587 220 -------------WHP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETS 285 (314)
T ss_pred -------------CCC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccC
Confidence 000 1133456677889999999999999999999999999999999999999999999975 3
Q ss_pred CCCHHHHHHHHhhCCC
Q 024086 228 KLTKEDMKEILNFVPI 243 (272)
Q Consensus 228 ~Lt~e~~~~l~~~~~~ 243 (272)
+|+++++++|+++.+.
T Consensus 286 ~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 286 GIDEELLSEVEAILAP 301 (314)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 7999999999998853
No 11
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.7e-40 Score=291.72 Aligned_cols=205 Identities=26% Similarity=0.411 Sum_probs=177.0
Q ss_pred CCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCc
Q 024086 7 PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP-----SVPIEDTIGELKMLVVEGK 81 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~-----~~~~~e~~~al~~l~~~G~ 81 (272)
.|++++|+||+|......+....+++++.+++++++||++|+|||||+|++|+++. ....+++|++|++|+++||
T Consensus 79 ~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gk 158 (290)
T PRK10376 79 YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGL 158 (290)
T ss_pred CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCc
Confidence 59999999999864322111223678999999999999999999999999888421 2347899999999999999
Q ss_pred cceeecCCCCHHHHHHHhcCCCcceeecccCccccchhhhHHHHHHHhCCceeecccccccccCCCCcCCCCCCCccccc
Q 024086 82 IKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLIS 161 (272)
Q Consensus 82 ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~~~~~~ 161 (272)
||+||+|||+.+.++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++..
T Consensus 159 ir~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~----------------- 220 (290)
T PRK10376 159 VRHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP----------------- 220 (290)
T ss_pred eeEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh-----------------
Confidence 9999999999999999998889999999999998763 6799999999999999999973210
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCHHHHHHHHhhC
Q 024086 162 HPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEILNFV 241 (272)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~e~~~~l~~~~ 241 (272)
...+.+.++|+++|+|++|+||+|+++++.++++|+|+++++||++|+++++.+|++++++.|+++.
T Consensus 221 -------------~~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~ 287 (290)
T PRK10376 221 -------------LQSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIA 287 (290)
T ss_pred -------------hhhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 0124788999999999999999999998777899999999999999999999999999999999876
Q ss_pred C
Q 024086 242 P 242 (272)
Q Consensus 242 ~ 242 (272)
+
T Consensus 288 ~ 288 (290)
T PRK10376 288 R 288 (290)
T ss_pred h
Confidence 4
No 12
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=1.2e-40 Score=286.94 Aligned_cols=201 Identities=29% Similarity=0.438 Sum_probs=178.7
Q ss_pred CCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCC----------------CCHHHHH
Q 024086 7 PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS----------------VPIEDTI 70 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~----------------~~~~e~~ 70 (272)
+|+++||+||++.. .+.++.++.++++||++||+||+|+|+||||-.. .+..++|
T Consensus 71 ~RediFiTSKlw~~---------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW 141 (300)
T KOG1577|consen 71 KREDIFITSKLWPT---------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETW 141 (300)
T ss_pred chhhheeeeccCcc---------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHH
Confidence 99999999999976 4578999999999999999999999999999442 2356899
Q ss_pred HHHHHHHHcCccceeecCCCCHHHHHHHhcC--CCcceeecccCccccchhhhHHHHHHHhCCceeecccccccccCCCC
Q 024086 71 GELKMLVVEGKIKYIGLSEASPDTIRRAHAV--HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKA 148 (272)
Q Consensus 71 ~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~ 148 (272)
++||++++.|++|+||||||+..++++++.. .++.++|+++++.-+ ..+++++|+.+||.|.||+||+++-- +.
T Consensus 142 ~amE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~~~-~~- 217 (300)
T KOG1577|consen 142 KAMEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSPGR-GS- 217 (300)
T ss_pred HHHHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCCCC-cc-
Confidence 9999999999999999999999999999987 568999999999776 46899999999999999999998631 00
Q ss_pred cCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCC
Q 024086 149 VVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMK 228 (272)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~ 228 (272)
..-.-+.+.++|+++|.|++|++|||+++++ ++||+.++|++||++|++.+++.
T Consensus 218 ------------------------~ll~~~~l~~iA~K~~kt~aQIlLrw~~q~g--~~vipKS~~~~Ri~eN~~vfdf~ 271 (300)
T KOG1577|consen 218 ------------------------DLLEDPVLKEIAKKYNKTPAQILLRWALQRG--VSVIPKSSNPERIKENFKVFDFE 271 (300)
T ss_pred ------------------------ccccCHHHHHHHHHhCCCHHHHHHHHHHhCC--cEEEeccCCHHHHHHHHhhcccc
Confidence 0111248999999999999999999999999 99999999999999999999999
Q ss_pred CCHHHHHHHHhhCCCCcC
Q 024086 229 LTKEDMKEILNFVPIEEV 246 (272)
Q Consensus 229 Lt~e~~~~l~~~~~~~~~ 246 (272)
||+||++.|+......+.
T Consensus 272 Lt~ed~~~i~~~~~~~r~ 289 (300)
T KOG1577|consen 272 LTEEDMKKLDSLNSNERY 289 (300)
T ss_pred CCHHHHHHHhhcccccee
Confidence 999999999988877663
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=2.8e-40 Score=291.45 Aligned_cols=224 Identities=18% Similarity=0.204 Sum_probs=182.3
Q ss_pred ccccCCCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCC-CCH-HHHHHHHHHHHHc
Q 024086 2 VLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPI-EDTIGELKMLVVE 79 (272)
Q Consensus 2 aL~~~~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~-~~~-~e~~~al~~l~~~ 79 (272)
||++..|++++|+||.. +.+++.+++++++||++||+||||+|++|+|++. .+. ++++++|++|+++
T Consensus 65 al~~~~~~~~~i~tk~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~ 133 (292)
T PRK14863 65 LIPRPVPFRVTLSTVRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQ 133 (292)
T ss_pred hhccCCceEeecccccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHc
Confidence 55532346789999842 2368999999999999999999999999999763 333 5789999999999
Q ss_pred CccceeecCCCCHHHHHHHhcCCCcceeecccCccccchh-hhHHHHHHHhCCceeecccccccccCCCCcCCCCCCCcc
Q 024086 80 GKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIE-EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSF 158 (272)
Q Consensus 80 G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~~~ 158 (272)
||||+||+|||++.++..+....+++++|++||++++..+ .+++++|+++||++++|+||++|+|++... ..+
T Consensus 134 Gkir~iGvSn~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~---- 207 (292)
T PRK14863 134 GLFAKIGVSAHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVP---- 207 (292)
T ss_pred CCcceEeeeccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCc----
Confidence 9999999999999999888877899999999999998653 469999999999999999999999975310 000
Q ss_pred cccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCHHHHHHHH
Q 024086 159 LISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEIL 238 (272)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~e~~~~l~ 238 (272)
..+......+..+.+++.+.++|++|+||+|++++|.|+++|+|+++++||++|+++...+++++.+++|.
T Consensus 208 ---------~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 208 ---------AQLKGASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred ---------cchhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 01112234566778888889999999999999999999999999999999999999998899998877765
Q ss_pred hhCCCCcCCCCCCc
Q 024086 239 NFVPIEEVAGDRTY 252 (272)
Q Consensus 239 ~~~~~~~~~~~~~~ 252 (272)
.-.+ .-+++.+|.
T Consensus 279 ~~~~-~~~~~~~~~ 291 (292)
T PRK14863 279 IDDP-VALDPRRWV 291 (292)
T ss_pred CChh-hccCccccC
Confidence 4433 334555553
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.2e-39 Score=270.08 Aligned_cols=217 Identities=26% Similarity=0.390 Sum_probs=191.9
Q ss_pred CCCCcEEEEecccccCCCC--c-ccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcc
Q 024086 6 LPRKKIQLASKFGVVSMAP--T-SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKI 82 (272)
Q Consensus 6 ~~R~~~~IstK~~~~~~~~--~-~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~i 82 (272)
.-||++.|.||+|..-... + -..+++|.++|..++|+||++|+|||+|+++||+||+-...+|+.+|+..|++.|||
T Consensus 72 ~lRekieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKV 151 (298)
T COG4989 72 GLREKIEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKV 151 (298)
T ss_pred hhhhheEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCe
Confidence 4899999999999865432 1 235799999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCHHHHHHHhcC--CCcceeecccCccccc-hhhhHHHHHHHhCCceeeccccccccc-CCCCcCCCCCCCcc
Q 024086 83 KYIGLSEASPDTIRRAHAV--HPITAVQMEWSLLTRD-IEEEIIPLCRELGIGIVPYSPLGRGLL-GGKAVVESLPANSF 158 (272)
Q Consensus 83 r~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gv~vi~~~~la~G~L-~~~~~~~~~~~~~~ 158 (272)
|++|||||++.+++-+-.. .++..+|++.|+++.. .....+++|+++.|..++||||++|-+ +|.
T Consensus 152 r~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~----------- 220 (298)
T COG4989 152 RHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD----------- 220 (298)
T ss_pred eeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------
Confidence 9999999999998877665 4578999999999875 446799999999999999999999843 221
Q ss_pred cccCCCCCCCchhhhHHHHHHHHHHHHhcC-CCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCHHHHHHH
Q 024086 159 LISHPRFTGENLGKNKQIYARVENLAKRNK-CTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKEI 237 (272)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~e~~~~l 237 (272)
+......+.+..+|.++| +|..++|++|++.+|.-..+|+|+.++++|++.+++++..||++++-+|
T Consensus 221 ------------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~I 288 (298)
T COG4989 221 ------------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEI 288 (298)
T ss_pred ------------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHH
Confidence 223456789999999999 7999999999999998889999999999999999999999999999999
Q ss_pred HhhCCCCc
Q 024086 238 LNFVPIEE 245 (272)
Q Consensus 238 ~~~~~~~~ 245 (272)
.....++.
T Consensus 289 y~Aa~G~~ 296 (298)
T COG4989 289 YTAAIGND 296 (298)
T ss_pred HHHhccCC
Confidence 88876554
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.6e-39 Score=283.23 Aligned_cols=202 Identities=26% Similarity=0.383 Sum_probs=174.7
Q ss_pred ccccC--CCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCC-CHHHHHHHHHHHHH
Q 024086 2 VLKQL--PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSV-PIEDTIGELKMLVV 78 (272)
Q Consensus 2 aL~~~--~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~-~~~e~~~al~~l~~ 78 (272)
||+.. +|++++|+||++.. +++.+++++++||++||+||||+|+||+|++.. ...++|++|++|++
T Consensus 60 al~~~~~~R~~~~i~tK~~~~-----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~ 128 (275)
T PRK11565 60 ALKEASVAREELFITTKLWND-----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQK 128 (275)
T ss_pred HHHHcCCCHHHEEEEEEecCc-----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHH
Confidence 45532 68999999998632 567999999999999999999999999998753 46899999999999
Q ss_pred cCccceeecCCCCHHHHHHHhcCC--CcceeecccCccccchhhhHHHHHHHhCCceeecccccccccCCCCcCCCCCCC
Q 024086 79 EGKIKYIGLSEASPDTIRRAHAVH--PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPAN 156 (272)
Q Consensus 79 ~G~ir~iGvS~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~ 156 (272)
+|+||+||+|||+++++++++... .+.++|++||++.+. .+++++|+++||++++|+||++|.- + .
T Consensus 129 ~G~ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~-----~---- 196 (275)
T PRK11565 129 EGLIKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G-----V---- 196 (275)
T ss_pred cCCeeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c-----c----
Confidence 999999999999999999887643 467899999998874 6799999999999999999997630 0 0
Q ss_pred cccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCHHHHHH
Q 024086 157 SFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTKEDMKE 236 (272)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~e~~~~ 236 (272)
+. .+.+.++|+++|+|++|+||+|+++++ .++|+|+++++|+++|+++++++|+++++++
T Consensus 197 --------~~----------~~~l~~ia~~~g~s~aq~aL~w~l~~~--~~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~ 256 (275)
T PRK11565 197 --------FD----------QKVIRDLADKYGKTPAQIVIRWHLDSG--LVVIPKSVTPSRIAENFDVFDFRLDKDELGE 256 (275)
T ss_pred --------cc----------CHHHHHHHHHhCCCHHHHHHHHHHcCC--CEeeCCCCCHHHHHHHHhccCCCcCHHHHHH
Confidence 00 136889999999999999999999998 5699999999999999999999999999999
Q ss_pred HHhhCCCCcC
Q 024086 237 ILNFVPIEEV 246 (272)
Q Consensus 237 l~~~~~~~~~ 246 (272)
|+++....++
T Consensus 257 i~~~~~~~~~ 266 (275)
T PRK11565 257 IAKLDQGKRL 266 (275)
T ss_pred HHhhcccCCc
Confidence 9999876553
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=257.09 Aligned_cols=206 Identities=26% Similarity=0.387 Sum_probs=179.8
Q ss_pred CccccCCCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHH-----HHHHHHHH
Q 024086 1 MVLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIE-----DTIGELKM 75 (272)
Q Consensus 1 ~aL~~~~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~-----e~~~al~~ 75 (272)
+||+++.|++|+++||+..... -+++++++-++++|++||+||+|+|+||..+.+ .++ +.++++++
T Consensus 68 kaL~~~~Rekv~LaTKlp~~~~--------~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-~~~k~~~~g~~df~~k 138 (391)
T COG1453 68 KALKDGYREKVKLATKLPSWPV--------KDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-TWEKIERLGVFDFLEK 138 (391)
T ss_pred HHhhhcccceEEEEeecCCccc--------cCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-HHHHHHccChHHHHHH
Confidence 5788889999999999984321 279999999999999999999999999999773 333 37999999
Q ss_pred HHHcCccceeecCCC-CHHHHHHHhcCCCcceeecccCccccchh--hhHHHHHHHhCCceeecccccccccCCCCcCCC
Q 024086 76 LVVEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQMEWSLLTRDIE--EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVES 152 (272)
Q Consensus 76 l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~ 152 (272)
++++|+||++|+|.| +.+.+.++++.+++|++|++||++++.-. .+.+++|.++|+||+.++|+.+|-|..+
T Consensus 139 ak~eGkIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~----- 213 (391)
T COG1453 139 AKAEGKIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN----- 213 (391)
T ss_pred HHhcCcEEEeeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----
Confidence 999999999999998 57889999999999999999999998643 4899999999999999999999976543
Q ss_pred CCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcC--CCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCC--C
Q 024086 153 LPANSFLISHPRFTGENLGKNKQIYARVENLAKRNK--CTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMM--K 228 (272)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~--~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~--~ 228 (272)
.| +++.+++++.+ .||+.+|+||++++|.|++|++||++++||++|++.++. |
T Consensus 214 vP-----------------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p 270 (391)
T COG1453 214 VP-----------------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEP 270 (391)
T ss_pred CC-----------------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCC
Confidence 11 37888888875 589999999999999999999999999999999998863 4
Q ss_pred -CCHHHHHHHHhhCCC
Q 024086 229 -LTKEDMKEILNFVPI 243 (272)
Q Consensus 229 -Lt~e~~~~l~~~~~~ 243 (272)
||++|+..|.++-+.
T Consensus 271 ~lte~e~~il~~v~~~ 286 (391)
T COG1453 271 SLTEEELQILEKVEEI 286 (391)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 999999888877643
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.8e-34 Score=238.61 Aligned_cols=214 Identities=21% Similarity=0.336 Sum_probs=181.5
Q ss_pred ccccCCCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCC----CCHHHHHHHHHHHH
Q 024086 2 VLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS----VPIEDTIGELKMLV 77 (272)
Q Consensus 2 aL~~~~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~----~~~~e~~~al~~l~ 77 (272)
++++.+|+.+||+||+|....+... -.++|++.+++++++||+||++||+||+++|..+.. ..+.|++.+|+++|
T Consensus 89 al~~vPR~aYyIaTKvgRy~ld~~~-~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk 167 (342)
T KOG1576|consen 89 ALKDVPREAYYIATKVGRYELDYAN-MFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELK 167 (342)
T ss_pred HHhhCChhheeeeeeeeecccCccc-cccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHH
Confidence 4566799999999999976544221 248999999999999999999999999999987654 23469999999999
Q ss_pred HcCccceeecCCCCHHHHHHHhcC--CCcceee--cccCccccchhhhHHHHHHHhCCceeecccccccccCCCCcCCCC
Q 024086 78 VEGKIKYIGLSEASPDTIRRAHAV--HPITAVQ--MEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESL 153 (272)
Q Consensus 78 ~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q--~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~ 153 (272)
++||||+||+|.++...+.++.+. +.++++. +.|++.+... -..++..+..|++|+.-++++.|+|+.+.++...
T Consensus 168 ~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wH 246 (342)
T KOG1576|consen 168 QEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPPWH 246 (342)
T ss_pred hcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCC
Confidence 999999999999999999999886 4567776 7888877643 4677888899999999999999999987544333
Q ss_pred CCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccCCCCCH
Q 024086 154 PANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLMMKLTK 231 (272)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~~~Lt~ 231 (272)
|. .++..+....-.++|++.|++...+|+.|.++.++++++++||++.++|+.|+++....||.
T Consensus 247 Pa--------------S~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 247 PA--------------SDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred CC--------------CHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 32 35667777888899999999999999999999999999999999999999999976667777
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.86 E-value=3.3e-05 Score=64.83 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCC--CcceeecccCccccchhhhHHHHHHHhCCceeecc
Q 024086 67 EDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVH--PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 67 ~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~ 137 (272)
.++|+.||+++.+|+|..||+|.++..+++++++.. .+.++|+...-...- ..++..||.+++|.++.++
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvv-PpdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVV-PPDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccC-CHHHHHHhhhcceeeeecC
Confidence 468999999999999999999999999999999974 467778766544332 2689999999999999874
No 19
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=86.13 E-value=12 Score=32.11 Aligned_cols=106 Identities=22% Similarity=0.158 Sum_probs=68.7
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-ccceeecCCCCHHHHHHHhcCCCcceee
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG-KIKYIGLSEASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q 108 (272)
.++.+...+-++. |..+|+++|.+-..-.+...-...+.++.++.+++.+ .++...++......++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~i~~~-L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIAEA-LDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 4566666665555 7788998888877665422212245788888888888 5666677665566667666654 56777
Q ss_pred cccCccc--------------cchhhhHHHHHHHhCCceeecc
Q 024086 109 MEWSLLT--------------RDIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 109 ~~~n~~~--------------~~~~~~~~~~~~~~gv~vi~~~ 137 (272)
+.+..-+ .+--.+.++.+++.|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 7655431 1111467888899998766543
No 20
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=83.17 E-value=28 Score=30.26 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceeeccc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEW 111 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~ 111 (272)
+.+.+.+...+.. .-|.|+||+-.= .......+.+...++.+++.-. .-|.+-+++++.++++++..+-..+-...
T Consensus 23 d~~~i~~~A~~~~-~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~-~plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 23 DAAFIQKLALKQA-EAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVD-VPLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCC-CCEEEeCCCHHHHHHHHHhCCCCCEEEeC
Confidence 5556666555544 678899998753 2222223445566666655422 24788899999999999873211222222
Q ss_pred CccccchhhhHHHHHHHhCCceeecccccccccCCCCcCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCH
Q 024086 112 SLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTP 191 (272)
Q Consensus 112 n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~ 191 (272)
|..... ..++++.++++|..++...--..|. | ...+...+..+.+.+.+.+.|+++
T Consensus 99 s~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~----------P-------------~t~~~~~~~l~~~v~~a~~~GI~~ 154 (261)
T PRK07535 99 SAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI----------P-------------KDAEDRLAVAKELVEKADEYGIPP 154 (261)
T ss_pred CCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC----------C-------------CCHHHHHHHHHHHHHHHHHcCCCH
Confidence 332211 2578999999999999864322331 0 011233455566667777888865
Q ss_pred HHH
Q 024086 192 AQL 194 (272)
Q Consensus 192 ~~l 194 (272)
.++
T Consensus 155 ~~I 157 (261)
T PRK07535 155 EDI 157 (261)
T ss_pred hHE
Confidence 553
No 21
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=82.21 E-value=25 Score=30.45 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEe-ccCCCCC-CHH----HHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCc
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYYQ-HRVDPSV-PIE----DTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPI 104 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~l-H~~~~~~-~~~----e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 104 (272)
++.+.+.+..++.+ .-|.|+||+-.- -+|+... ..+ .+...++.+++.-.+ -+.+-+++++.++++++.+ .
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~-plSIDT~~~~v~e~al~~G-~ 97 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDV-LISVDTFRAEVARAALEAG-A 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-cEEEeCCCHHHHHHHHHhC-C
Confidence 46666666666665 567899998632 2344331 222 344456666665333 3888999999999999875 2
Q ss_pred ceeecccCccccchhhhHHHHHHHhCCceeecc
Q 024086 105 TAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 105 ~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~ 137 (272)
+.+ ...+....+ .++++.++++|..++.+.
T Consensus 98 ~iI-Ndisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 98 DII-NDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred CEE-EeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 322 222333221 578999999999999953
No 22
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=81.02 E-value=31 Score=31.00 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=54.4
Q ss_pred HhhhCCCcccEEEeccC-CC-CCCHHHHHHHHHHHHHcCccce-eecCCC---CHHHHHHHhcCCC-cceeecccCcccc
Q 024086 44 LKRLGVDYIDLYYQHRV-DP-SVPIEDTIGELKMLVVEGKIKY-IGLSEA---SPDTIRRAHAVHP-ITAVQMEWSLLTR 116 (272)
Q Consensus 44 L~~L~~d~iDl~~lH~~-~~-~~~~~e~~~al~~l~~~G~ir~-iGvS~~---~~~~l~~~~~~~~-~~~~q~~~n~~~~ 116 (272)
-+.+|.|+|||-+.-.. +. +...++....++...+.=.+=- |..|.. +++.+++.++... -..+....|. .
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~--e 162 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE--D 162 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH--H
Confidence 35889888888764432 11 2234444444444433322222 555532 7888888877532 1122222222 1
Q ss_pred chhhhHHHHHHHhCCceeeccccc
Q 024086 117 DIEEEIIPLCRELGIGIVPYSPLG 140 (272)
Q Consensus 117 ~~~~~~~~~~~~~gv~vi~~~~la 140 (272)
+ .+.+.+.|+++|..|++.+|..
T Consensus 163 n-~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 163 N-YKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred H-HHHHHHHHHHhCCeEEEEcHHH
Confidence 2 3789999999999999987553
No 23
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=80.20 E-value=22 Score=30.83 Aligned_cols=68 Identities=10% Similarity=0.014 Sum_probs=42.9
Q ss_pred HHHHHHHcCccceeec-CCCCHHHHHHHhcCCCcc--eeecccCccccchhhhHHHHHHHhCCceeeccccc
Q 024086 72 ELKMLVVEGKIKYIGL-SEASPDTIRRAHAVHPIT--AVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLG 140 (272)
Q Consensus 72 al~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~--~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la 140 (272)
.|.+-.++|+. .+|+ .......+.+++....|| ++-.++..++...-..++..|+..|+..+.+-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 35555566774 4554 223223444444444445 45558888887655778889999999888877654
No 24
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=78.36 E-value=40 Score=29.07 Aligned_cols=102 Identities=19% Similarity=0.162 Sum_probs=65.7
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEe-ccCCCC-----CCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCc
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYYQ-HRVDPS-----VPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPI 104 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~l-H~~~~~-----~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 104 (272)
.+.+.+.+..++.+ .-|.|+||+=-- -+|+.. ...+.+...++.+++.-.+ -|.+.+++++.++++++...
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~- 97 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGA- 97 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCC-
Confidence 46677777766665 668899998742 334321 1123356666677665233 48999999999999998762
Q ss_pred ceeecccCccccchhhhHHHHHHHhCCceeeccc
Q 024086 105 TAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 138 (272)
Q Consensus 105 ~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~ 138 (272)
+ +-...+.... ..++++.++++|..++.+..
T Consensus 98 ~-iINdis~~~~--~~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 98 D-IINDVSGGRG--DPEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred C-EEEeCCCCCC--ChHHHHHHHHcCCCEEEECc
Confidence 2 2222233321 15789999999999988754
No 25
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=77.35 E-value=21 Score=32.88 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=60.3
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceee
Q 024086 29 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 108 (272)
.+++.+.+.+.||+..+ |-+|.+-||.- -..+.++.+++.|+ ..|+-+-...-+..++....
T Consensus 135 ~~mt~d~~~~~ie~qa~----dGVDfmTiH~G-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~----- 196 (423)
T TIGR00190 135 EDMDEDDMFRAIEKQAK----DGVDFMTIHAG-------VLLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH----- 196 (423)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC-----
Confidence 36778888888888776 44788889963 24677888888884 67887776665555543221
Q ss_pred cccCccccchhhhHHHHHHHhCCcee
Q 024086 109 MEWSLLTRDIEEEIIPLCRELGIGIV 134 (272)
Q Consensus 109 ~~~n~~~~~~~~~~~~~~~~~gv~vi 134 (272)
.=|++...+ ..+++.|+++++.+-
T Consensus 197 -~ENPlye~f-D~lLeI~~~yDVtlS 220 (423)
T TIGR00190 197 -KENPLYKNF-DYILEIAKEYDVTLS 220 (423)
T ss_pred -CcCchHHHH-HHHHHHHHHhCeeee
Confidence 235665554 689999999999874
No 26
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=75.34 E-value=36 Score=28.57 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=59.5
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHh
Q 024086 52 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCREL 129 (272)
Q Consensus 52 iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~ 129 (272)
.++.++-.|-+.. -++.+.+|.+...+. +.+-|.++.+.+..++....++++|+..+..-- ....++...|+.+
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4555555553322 256667777776655 335556778888888888888999997766532 1126789999999
Q ss_pred CCceeeccccccc
Q 024086 130 GIGIVPYSPLGRG 142 (272)
Q Consensus 130 gv~vi~~~~la~G 142 (272)
|+.++.++.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776554
No 27
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=73.23 E-value=10 Score=31.71 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=49.8
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhcCCCcceeecc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 110 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 110 (272)
+.+.++. ...+|.||+=+.+........+.+.+ ..+.+.. .+.++.+||. +.+++.+.++++...++++|++
T Consensus 10 ~~eda~~-----~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 82 (207)
T PRK13958 10 TIKDVTA-----ASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLH 82 (207)
T ss_pred cHHHHHH-----HHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 4555554 44599999998754433233333333 3333332 2568889996 6789999999999999999997
Q ss_pred cC
Q 024086 111 WS 112 (272)
Q Consensus 111 ~n 112 (272)
-+
T Consensus 83 G~ 84 (207)
T PRK13958 83 GT 84 (207)
T ss_pred CC
Confidence 54
No 28
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=73.08 E-value=42 Score=29.79 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=67.1
Q ss_pred HhhhCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCccce-eecCC---CCHHHHHHHhcCCCc-ceeecccCc
Q 024086 44 LKRLGVDYIDLYYQHRVDP-----SVPIEDTIGELKMLVVEGKIKY-IGLSE---ASPDTIRRAHAVHPI-TAVQMEWSL 113 (272)
Q Consensus 44 L~~L~~d~iDl~~lH~~~~-----~~~~~e~~~al~~l~~~G~ir~-iGvS~---~~~~~l~~~~~~~~~-~~~q~~~n~ 113 (272)
.+++| .|++.||-... +++..|+.+.+|++.+.=++=. ||=|. -+++.++++.+...- .+.....|+
T Consensus 160 Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSanl 236 (403)
T COG2069 160 VKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASANL 236 (403)
T ss_pred HHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecccc
Confidence 45677 47888886633 3667899999999988877754 46665 367888888776433 344445555
Q ss_pred cccchhhhHHHHHHHhCCceeecccccc
Q 024086 114 LTRDIEEEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 114 ~~~~~~~~~~~~~~~~gv~vi~~~~la~ 141 (272)
+.++ +.+.+.+.++|=.|++|+++.-
T Consensus 237 -dlDy-~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 237 -DLDY-ERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred -ccCH-HHHHHHHHhcCceEEEeeccCh
Confidence 3343 7899999999999999998864
No 29
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=72.44 E-value=33 Score=31.77 Aligned_cols=90 Identities=19% Similarity=0.212 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceeec
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQM 109 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 109 (272)
+++++.+...||+..+ |-+|.+-||.- -..+.++.+++.|+ ..|+-+-...-+..++....
T Consensus 139 ~mt~d~~~~~ie~qa~----~GVDfmTiHcG-------i~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~------ 199 (431)
T PRK13352 139 DMTEDDLFDVIEKQAK----DGVDFMTIHCG-------VTRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN------ 199 (431)
T ss_pred hCCHHHHHHHHHHHHH----hCCCEEEEccc-------hhHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC------
Confidence 6788888888888776 45788999963 24677888888885 67887776666555543211
Q ss_pred ccCccccchhhhHHHHHHHhCCceeecccccccc
Q 024086 110 EWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 110 ~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
.=|++...+ ..+++.|++++|.+- |+.|+
T Consensus 200 ~ENPlye~f-D~lLeI~~~yDVtlS----LGDgl 228 (431)
T PRK13352 200 KENPLYEHF-DYLLEILKEYDVTLS----LGDGL 228 (431)
T ss_pred CcCchHHHH-HHHHHHHHHhCeeee----ccCCc
Confidence 335666554 789999999999874 45554
No 30
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=72.42 E-value=44 Score=28.81 Aligned_cols=66 Identities=9% Similarity=-0.045 Sum_probs=39.9
Q ss_pred HHHHHcCccceeec-CCCCHHHHHHHhcCCCcc--eeecccCccccchhhhHHHHHHHhCCceeeccccc
Q 024086 74 KMLVVEGKIKYIGL-SEASPDTIRRAHAVHPIT--AVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLG 140 (272)
Q Consensus 74 ~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~--~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la 140 (272)
.+-.++|+. .+|+ .+.....+.+++....|| ++-.++.+++...-..++..++..|+..+.+-|-.
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 334445664 4554 233223444444444455 44558888887655778888888898888876654
No 31
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=71.58 E-value=57 Score=28.48 Aligned_cols=67 Identities=15% Similarity=0.021 Sum_probs=40.4
Q ss_pred HHHHHHcCccceeec-CCCCHHHHHHHhcCCCccee--ecccCccccchhhhHHHHHHHhCCceeeccccc
Q 024086 73 LKMLVVEGKIKYIGL-SEASPDTIRRAHAVHPITAV--QMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLG 140 (272)
Q Consensus 73 l~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la 140 (272)
|.+..++|+. .+|+ .+.....+.+++....||++ -.++..++.......+..++..|+..+.+-|-.
T Consensus 9 lk~~L~~G~~-~~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~ 78 (267)
T PRK10128 9 FKEGLRKGEV-QIGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEG 78 (267)
T ss_pred HHHHHHcCCc-eEEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 4455556775 3443 22322344444444445555 558888887655678888888888887776543
No 32
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=69.59 E-value=88 Score=28.39 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=82.1
Q ss_pred CCCCcEEEEecccccCCC----Cc--ccccCCCHHHHHHHHHHHHhhhCCCcccEEEecc-CCCCCCHHHHHHHHHHHHH
Q 024086 6 LPRKKIQLASKFGVVSMA----PT--SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHR-VDPSVPIEDTIGELKMLVV 78 (272)
Q Consensus 6 ~~R~~~~IstK~~~~~~~----~~--~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~-~~~~~~~~e~~~al~~l~~ 78 (272)
..|-.++|||-+|..-.+ .+ +....++++.|..++....+.++. .++-+.+-. =.|..+++.+++++..+.+
T Consensus 98 ~~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~ 176 (345)
T PRK14457 98 EKRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQ 176 (345)
T ss_pred CCCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhc
Confidence 367889999988875543 12 223467999999999988877753 356444443 4455667889999999987
Q ss_pred c-Cc-cceeecCCC-CHHHHHHHhcCC-----Ccc-eeecccCccccchh----------------hhHHHHHHHhCCce
Q 024086 79 E-GK-IKYIGLSEA-SPDTIRRAHAVH-----PIT-AVQMEWSLLTRDIE----------------EEIIPLCRELGIGI 133 (272)
Q Consensus 79 ~-G~-ir~iGvS~~-~~~~l~~~~~~~-----~~~-~~q~~~n~~~~~~~----------------~~~~~~~~~~gv~v 133 (272)
. |. .+.|-+|+. .+..+.++.+.. .++ .+.+..|..+.... +.+..+..+.|-.|
T Consensus 177 ~~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I 256 (345)
T PRK14457 177 DLGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRV 256 (345)
T ss_pred ccCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEE
Confidence 5 43 356666664 344555555432 011 23444444433211 23345555567666
Q ss_pred eecccccccc
Q 024086 134 VPYSPLGRGL 143 (272)
Q Consensus 134 i~~~~la~G~ 143 (272)
...-||-.|+
T Consensus 257 ~iey~LIpGv 266 (345)
T PRK14457 257 SFEYILLGGV 266 (345)
T ss_pred EEEEEEECCc
Confidence 6666776654
No 33
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=68.86 E-value=48 Score=29.64 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=62.0
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhC
Q 024086 53 DLYYQHRVDPSVPIEDTIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELG 130 (272)
Q Consensus 53 Dl~~lH~~~~~~~~~e~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~g 130 (272)
++.++-.|-+ .+.++.+.++++...+. +.|-|.++...+..+++...++++|+....+-. ....++...|+.+|
T Consensus 199 ~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~g 274 (324)
T TIGR01928 199 QLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHG 274 (324)
T ss_pred CCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcC
Confidence 4555554422 23467777887765554 557788899999999998889999987765432 11268999999999
Q ss_pred Cceeecccccccc
Q 024086 131 IGIVPYSPLGRGL 143 (272)
Q Consensus 131 v~vi~~~~la~G~ 143 (272)
+.++..+.+..|+
T Consensus 275 i~~~~~~~~es~i 287 (324)
T TIGR01928 275 AKVWIGGMLETGI 287 (324)
T ss_pred CeEEEcceEcccH
Confidence 9998876665554
No 34
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=67.38 E-value=14 Score=30.90 Aligned_cols=75 Identities=24% Similarity=0.309 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhcCCCcceeecc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 110 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 110 (272)
+.+.++.+ ..+|.|++=+.+..........+ ....+.... .+.+..+||. +.+++.+.++++...++++|+.
T Consensus 12 ~~eda~~~-----~~~Gad~iGfI~~~~S~R~V~~~-~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLH 84 (210)
T PRK01222 12 TPEDAEAA-----AELGADAIGFVFYPKSPRYVSPE-QAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLH 84 (210)
T ss_pred cHHHHHHH-----HHcCCCEEEEccCCCCCCcCCHH-HHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 45555544 45899999987444322223333 333333322 3568899997 5688999999999999999997
Q ss_pred cCc
Q 024086 111 WSL 113 (272)
Q Consensus 111 ~n~ 113 (272)
-+.
T Consensus 85 g~e 87 (210)
T PRK01222 85 GDE 87 (210)
T ss_pred CCC
Confidence 643
No 35
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=67.36 E-value=28 Score=29.21 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhcCCCcceeecc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 110 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 110 (272)
+++.+..+ ..+|.||+=+++--........+++-+....+ .. +..+||. |.+.+.+.++++...++.+|++
T Consensus 11 ~~eda~~a-----~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v-~~--~~~VgVf~n~~~~~i~~i~~~~~ld~VQlH 82 (208)
T COG0135 11 RLEDAKAA-----AKAGADYIGFIFVPKSPRYVSPEQAREIASAV-PK--VKVVGVFVNESIEEILEIAEELGLDAVQLH 82 (208)
T ss_pred CHHHHHHH-----HHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhC-CC--CCEEEEECCCCHHHHHHHHHhcCCCEEEEC
Confidence 45555543 46789998877766322333333333322222 22 7899997 4688999999999999999997
Q ss_pred cCccccchhhhHHHHHHHhC
Q 024086 111 WSLLTRDIEEEIIPLCRELG 130 (272)
Q Consensus 111 ~n~~~~~~~~~~~~~~~~~g 130 (272)
-.. ..+.++..+...
T Consensus 83 G~e-----~~~~~~~l~~~~ 97 (208)
T COG0135 83 GDE-----DPEYIDQLKEEL 97 (208)
T ss_pred CCC-----CHHHHHHHHhhc
Confidence 664 234555555543
No 36
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=66.73 E-value=31 Score=31.40 Aligned_cols=71 Identities=11% Similarity=-0.014 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeecccc
Q 024086 69 TIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 69 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~l 139 (272)
-++.+.+|++...+. +.|=|.++...+..++....++++|+.....-- ....++.+.|+.+|+.++.++..
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 366777787776665 667777889999999998888999997765421 11268999999999999876544
No 37
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=66.68 E-value=65 Score=27.71 Aligned_cols=74 Identities=16% Similarity=0.178 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeecccccccc
Q 024086 70 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 70 ~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
++.+.++++.-.+- +.|=+.++...+.++++...++++|+.-+..-- ....++...|+.+|+.++..+.+.+|+
T Consensus 169 ~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 169 LEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchHH
Confidence 45556666554443 334455778888888888888888887665432 122678999999999999876665543
No 38
>COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism]
Probab=65.96 E-value=76 Score=29.18 Aligned_cols=87 Identities=10% Similarity=0.086 Sum_probs=60.8
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceee
Q 024086 29 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 108 (272)
.+++.+.+...+++..+ +-+|.+.||. .-..++++.+++.|+ ..|+-+-....+..++-...
T Consensus 136 ~~~t~d~~~~~v~~qa~----~GVdfmTIHa-------GV~~~~~~~~~~~~R--~~giVSRGGsi~a~Wml~~~----- 197 (432)
T COG0422 136 EDLTEDDFFDTVEKQAE----QGVDFMTIHA-------GVLLEYVPRTKRSGR--VTGIVSRGGSIMAAWMLHNH----- 197 (432)
T ss_pred hhCCHHHHHHHHHHHHH----hCCcEEEeeh-------hhhHHHHHHHHhcCc--eeeeeccchHHHHHHHHHcC-----
Confidence 46788888888888776 3478889995 235788889999887 57777766555554432211
Q ss_pred cccCccccchhhhHHHHHHHhCCceee
Q 024086 109 MEWSLLTRDIEEEIIPLCRELGIGIVP 135 (272)
Q Consensus 109 ~~~n~~~~~~~~~~~~~~~~~gv~vi~ 135 (272)
.=|++...+ .++++.|+++++.+--
T Consensus 198 -~ENply~~f-d~lleI~k~yDvtlSL 222 (432)
T COG0422 198 -KENPLYEHF-DELLEIFKEYDVTLSL 222 (432)
T ss_pred -CcCchhhhH-HHHHHHHHHhCeeeec
Confidence 235555554 7899999999998743
No 39
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=65.57 E-value=15 Score=30.37 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHH-----------HHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHH
Q 024086 30 KGTPEYVRSCCEA-----------SLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRA 98 (272)
Q Consensus 30 ~~s~~~i~~~le~-----------SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~ 98 (272)
..+.+.+.+++++ .|..+.-+.+|.+.|..- -..+..--+.|+++.+-|+---|++.||.-+.....
T Consensus 43 Eid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt--LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~ 120 (193)
T PF07021_consen 43 EIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQT--LQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQ 120 (193)
T ss_pred ecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhH--HHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHH
Confidence 5567777777554 444555555555555421 011223455677888889988899999976655444
Q ss_pred hc--CCCcceeecccCcccc-chh----hhHHHHHHHhCCceeecccccccc
Q 024086 99 HA--VHPITAVQMEWSLLTR-DIE----EEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 99 ~~--~~~~~~~q~~~n~~~~-~~~----~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
+- ..-+..-..+|+..+- +.. ++.-++|++.|+.+.-..++..+.
T Consensus 121 l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 121 LLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 33 2334455666665542 221 788999999999999999988764
No 40
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=65.51 E-value=26 Score=31.84 Aligned_cols=74 Identities=9% Similarity=0.089 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeeccccccc
Q 024086 69 TIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 69 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
-++.+.+|+++..|. +.|=|.++...+..+++...++.+|+.....-- ....++...|+.+|+.++..+-..+|
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 356666777665554 556667788888888888778888886655421 11267899999999998876544443
No 41
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=64.88 E-value=92 Score=26.87 Aligned_cols=109 Identities=14% Similarity=0.058 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceeec
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQM 109 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 109 (272)
..+.+.+.+..++.++ -|.|+||+=. .|......++....+..+++.-. .-|.+-+++++.++++++.+.-..+-.
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~-~piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPT-VPLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcC-CcEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 3467778877777775 5999999865 23321222333333222322211 247888999999999998631122222
Q ss_pred ccCcccc-chhhhHHHHHHHhCCceeeccccccc
Q 024086 110 EWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 110 ~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
..+.... ....++++.++++|..++.+..-..|
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~~~g 131 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAFDEQG 131 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEeccCCCC
Confidence 3333321 11256788899999999887543333
No 42
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=64.37 E-value=37 Score=26.67 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=44.3
Q ss_pred eeecCCCC--HHHHHHHhcCCCcceeecccCccccchhhhHHHHHHHhCCceeecccccccc
Q 024086 84 YIGLSEAS--PDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 84 ~iGvS~~~--~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
-+|...|+ ...+..++....|+++-.... +. .++++..+.++++.+++.|.+.+|.
T Consensus 19 k~GlDgHd~gakvia~~l~d~GfeVi~~g~~---~t-p~e~v~aA~~~dv~vIgvSsl~g~h 76 (143)
T COG2185 19 KLGLDGHDRGAKVIARALADAGFEVINLGLF---QT-PEEAVRAAVEEDVDVIGVSSLDGGH 76 (143)
T ss_pred ccCccccccchHHHHHHHHhCCceEEecCCc---CC-HHHHHHHHHhcCCCEEEEEeccchH
Confidence 45888875 467888899888888766433 33 3789999999999999999999875
No 43
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=63.86 E-value=40 Score=26.34 Aligned_cols=48 Identities=0% Similarity=0.021 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHHhhhC--CCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 024086 31 GTPEYVRSCCEASLKRLG--VDYIDLYYQHRVDPSVPIEDTIGELKMLVV 78 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~--~d~iDl~~lH~~~~~~~~~e~~~al~~l~~ 78 (272)
..++.|.+.+.++++.+. +...|++++.......+..++...|..+.+
T Consensus 60 V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~ 109 (138)
T PRK00730 60 HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIP 109 (138)
T ss_pred hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHH
Confidence 368888888888888764 346899999998876667776666665544
No 44
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=63.00 E-value=1.4e+02 Score=28.18 Aligned_cols=84 Identities=14% Similarity=0.143 Sum_probs=58.0
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCcccEEEeccCC-CCCCHHHHHHHHHHHHHc--CccceeecCCCC---HHHHHHHhcCC
Q 024086 29 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVD-PSVPIEDTIGELKMLVVE--GKIKYIGLSEAS---PDTIRRAHAVH 102 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~-~~~~~~e~~~al~~l~~~--G~ir~iGvS~~~---~~~l~~~~~~~ 102 (272)
..++++.+.+.+++....++ .++.+-|-.+. +....+.+++.+..++++ |. .+.+|+.. ++.++++.+.
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~- 132 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDL- 132 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHC-
Confidence 35789999999988877663 35667777753 334456789999999988 44 56766543 5677777665
Q ss_pred CcceeecccCccccc
Q 024086 103 PITAVQMEWSLLTRD 117 (272)
Q Consensus 103 ~~~~~q~~~n~~~~~ 117 (272)
.++.+.+..|-.++.
T Consensus 133 gvd~V~islka~d~e 147 (442)
T TIGR01290 133 GVGHVTITINAIDPA 147 (442)
T ss_pred CCCeEEEeccCCCHH
Confidence 357777777766654
No 45
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=62.91 E-value=37 Score=31.34 Aligned_cols=73 Identities=8% Similarity=0.045 Sum_probs=51.9
Q ss_pred HHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeeccccccc
Q 024086 70 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 70 ~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
++.+.+|++...+- +.|-|.++.+.+..+++...++++|+.....-- ....++...|+.+|+.+..++....|
T Consensus 250 ~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~e~~ 324 (395)
T cd03323 250 REGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNNHLG 324 (395)
T ss_pred HHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCcccH
Confidence 55666666665544 556666788888888888888999887665321 11268999999999999888765333
No 46
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=62.22 E-value=28 Score=31.68 Aligned_cols=73 Identities=11% Similarity=0.013 Sum_probs=52.9
Q ss_pred HHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeeccccccc
Q 024086 70 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 70 ~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
++.+.+|++..-+. +.|-|.++...+..++.....+++|+.....-. ..-.++...|+.+|+.++..+.+.+|
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 56666777766554 667778888889999888888999986665321 11267899999999998876555444
No 47
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=62.09 E-value=59 Score=30.09 Aligned_cols=71 Identities=7% Similarity=-0.033 Sum_probs=53.7
Q ss_pred HHHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeecccc
Q 024086 69 TIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 69 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~l 139 (272)
-++.+.+|++...|. +.|=|.++...++.+++...++++|+.....-- ..-.++...|+.+|+.++.++..
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~~ 317 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGPT 317 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccCc
Confidence 367777787776555 567777899999999998889999987665421 11268999999999999987554
No 48
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=61.87 E-value=40 Score=30.98 Aligned_cols=120 Identities=14% Similarity=0.203 Sum_probs=71.6
Q ss_pred HHHHHcCccceeecCCCC----HHHHHHHhcCCCcceeecccCccccchhhhHHHHHHHhCCce---eecccccccccCC
Q 024086 74 KMLVVEGKIKYIGLSEAS----PDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGI---VPYSPLGRGLLGG 146 (272)
Q Consensus 74 ~~l~~~G~ir~iGvS~~~----~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~v---i~~~~la~G~L~~ 146 (272)
.++.++-.||.+|+=.-+ ..++.+.+..+--+...+..++-+- .-=.|-++|..| +++.||. |+..|
T Consensus 164 ~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNG-----ASicAiknGkSvDTSMGfTPLe-Gl~MG 237 (396)
T COG0282 164 YELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNG-----ASICAIKNGKSVDTSMGFTPLE-GLMMG 237 (396)
T ss_pred HHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCc-----hhhhhhhCCeeeccCCCCCccc-ceecc
Confidence 367777789999885433 3456666665533666776776443 122345666655 7889997 67666
Q ss_pred CCcCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCC-HHHHHHhHhc
Q 024086 147 KAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTK-IKNLDENIGS 224 (272)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~-~~~l~~nl~~ 224 (272)
.+.++ .. | ..+.-+++..|+|+.|+.---.-..+ --=|.|-++ .-.|.++...
T Consensus 238 TRsGd-iD--------P--------------~ii~~l~~~~~~s~~~i~~~LNkkSG--llGlSg~ssD~R~l~~~~~~ 291 (396)
T COG0282 238 TRSGD-ID--------P--------------GIILYLMEQEGMSAEEIDTLLNKKSG--LLGLSGLSSDMRDLEEAAAE 291 (396)
T ss_pred CCCCC-CC--------h--------------HHHHHHHHhcCCCHHHHHHHHhhhcc--ccccccccchHHHHHHHhcc
Confidence 54332 11 1 26777888899999986544333333 344445333 5555555543
No 49
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=59.41 E-value=38 Score=30.53 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeeccc
Q 024086 70 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSP 138 (272)
Q Consensus 70 ~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~ 138 (272)
++.+..+++.-.|- ..|=|.++.+.+.++++...+|++|+.....-- ..-.++...|+.+|+.++.++-
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 45555666654443 333455778888888888888899887665431 1126899999999999887653
No 50
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=59.18 E-value=1.4e+02 Score=27.33 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=55.7
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc------CccceeecCCCCHHHHHHHhcCCCcceeecccCccccc-hhhhHHHHHH
Q 024086 55 YYQHRVDPSVPIEDTIGELKMLVVE------GKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRD-IEEEIIPLCR 127 (272)
Q Consensus 55 ~~lH~~~~~~~~~e~~~al~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~ 127 (272)
+++..|-+..+.++-++.+.+++++ +.=-..|-|.++.+.+.++++....+++|+..+-.--- ...++...|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 4555543322222335666666655 33334466777888999998888889999987764321 1268999999
Q ss_pred HhCCceeeccc
Q 024086 128 ELGIGIVPYSP 138 (272)
Q Consensus 128 ~~gv~vi~~~~ 138 (272)
.+|+.++..+.
T Consensus 310 a~Gi~~~~h~~ 320 (369)
T cd03314 310 EHGVGAYLGGS 320 (369)
T ss_pred HcCCcEEEeCC
Confidence 99999998754
No 51
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=59.18 E-value=40 Score=30.39 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=51.9
Q ss_pred HHHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeecc
Q 024086 69 TIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 69 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~ 137 (272)
-++.+.+|+++..|. +.|=|.++...+..+++...++++|+..+..-- ..-.++...|+.+|+.++.+.
T Consensus 210 d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 210 DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 366777787776665 556677888999999998888999987665421 123689999999999988764
No 52
>PRK14017 galactonate dehydratase; Provisional
Probab=58.95 E-value=50 Score=30.23 Aligned_cols=70 Identities=16% Similarity=0.163 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeecccc
Q 024086 70 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 70 ~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~l 139 (272)
++.+.+|++...+. ..|=|.++...+..+++...++++|+..+..-- ..-.++.+.|+.+|+.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 56777777776554 556677889999999998888999987765421 12368999999999999887543
No 53
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=58.81 E-value=34 Score=28.53 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=57.8
Q ss_pred HHhhhCCCcccEEEec-cCCCC-CC----HHHHHHHHHHHHH--cCccceeecCCCCHHHHHHHhcCCCcceeecccCcc
Q 024086 43 SLKRLGVDYIDLYYQH-RVDPS-VP----IEDTIGELKMLVV--EGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLL 114 (272)
Q Consensus 43 SL~~L~~d~iDl~~lH-~~~~~-~~----~~e~~~al~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~ 114 (272)
.+..-|.|+||+=--- +|+.. .. ++.+...++.+++ .+. -+.+-+++++.++++++. ..+++--..+.-
T Consensus 27 ~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~ 103 (210)
T PF00809_consen 27 EQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFE 103 (210)
T ss_dssp HHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTS
T ss_pred HHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEeccccc
Confidence 3445688999986433 22211 11 2335666666665 333 677888999999999987 444443333332
Q ss_pred ccchhhhHHHHHHHhCCceeecccc
Q 024086 115 TRDIEEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 115 ~~~~~~~~~~~~~~~gv~vi~~~~l 139 (272)
. ..++++.+++++..++++..-
T Consensus 104 ~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S---STTHHHHHHHHTSEEEEESES
T ss_pred c---cchhhhhhhcCCCEEEEEecc
Confidence 1 368999999999999987554
No 54
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=58.81 E-value=57 Score=30.38 Aligned_cols=70 Identities=13% Similarity=0.017 Sum_probs=49.0
Q ss_pred HHHHHHHHHc------CccceeecCCCCHHHHHHHhcCCCcceeecccCccccc-hhhhHHHHHHHhCCceeecccc
Q 024086 70 IGELKMLVVE------GKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRD-IEEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 70 ~~al~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gv~vi~~~~l 139 (272)
++.+.+|++. +.=-..+-|.++.+.+..+++....+++|+..+-.--- ...++..+|+.+|+.+...+..
T Consensus 281 ~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 281 IEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred HHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 5555555544 22223355667888889998888889999977754321 1268999999999999987655
No 55
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=58.46 E-value=58 Score=29.47 Aligned_cols=69 Identities=12% Similarity=0.093 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeecc
Q 024086 69 TIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 69 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~ 137 (272)
-++.+.+|+++.-+. +.|=|.++...+..++....++++|+.....-- ..-.++.+.|+++|+.++.++
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 366677777665444 446677888898888887788999987655421 122689999999999998765
No 56
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=57.89 E-value=1.2e+02 Score=26.00 Aligned_cols=65 Identities=15% Similarity=0.034 Sum_probs=36.8
Q ss_pred HHHHHHcCccceeec--CCCCHHHHHHHhcC-CCcceeecccCccccchhhhHHHHHHHhCCceeeccc
Q 024086 73 LKMLVVEGKIKYIGL--SEASPDTIRRAHAV-HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 138 (272)
Q Consensus 73 l~~l~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~ 138 (272)
+.+..++|+. .+|+ +.-++..++.+... .++.++-.+++.++.......+..++..|+.++.+-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 3445556775 3444 33444555554443 3334445578887654335577777777877777644
No 57
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=57.13 E-value=6 Score=36.05 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=35.6
Q ss_pred HHHcCccceeecCCCCHHHHHHHhcCCC-cceeecccCccccchhhhHHHHHHHhCCc
Q 024086 76 LVVEGKIKYIGLSEASPDTIRRAHAVHP-ITAVQMEWSLLTRDIEEEIIPLCRELGIG 132 (272)
Q Consensus 76 l~~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gv~ 132 (272)
.-=-|+|||+||-=++++++.++..... -+..+.+.+++--..+..+++.|++.||.
T Consensus 260 eTCVGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 260 ETCVGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhhhcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 3446999999999999999988876532 23333333322211234667777777664
No 58
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=56.24 E-value=20 Score=27.66 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=22.1
Q ss_pred ccchhhhHHHHHHHhCCceeeccccc
Q 024086 115 TRDIEEEIIPLCRELGIGIVPYSPLG 140 (272)
Q Consensus 115 ~~~~~~~~~~~~~~~gv~vi~~~~la 140 (272)
.++...++++.|+++||.|++|-.+.
T Consensus 42 ~~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 42 KRDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred CcCHHHHHHHHHHHCCCEEEEEEeee
Confidence 35566899999999999999997765
No 59
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=54.80 E-value=49 Score=31.28 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=48.7
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhcCCCcceeecc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 110 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 110 (272)
+.+.+..+.+ +|.|++=+.+........+.+.+-+....+ . ++.+||- +.+++.+.++++...+|++|++
T Consensus 266 ~~eda~~a~~-----~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l-~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLH 336 (454)
T PRK09427 266 RPQDAKAAYD-----AGAVYGGLIFVEKSPRYVSLEQAQEIIAAA-P---LRYVGVFRNADIEDIVDIAKQLSLAAVQLH 336 (454)
T ss_pred CHHHHHHHHh-----CCCCEEeeEeCCCCCCCCCHHHHHHHHHhC-C---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeC
Confidence 4566655544 799999887544322223333333333222 2 8889997 6788999999999999999997
Q ss_pred cCc
Q 024086 111 WSL 113 (272)
Q Consensus 111 ~n~ 113 (272)
-+-
T Consensus 337 G~e 339 (454)
T PRK09427 337 GDE 339 (454)
T ss_pred CCC
Confidence 754
No 60
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=54.52 E-value=18 Score=26.50 Aligned_cols=55 Identities=24% Similarity=0.189 Sum_probs=41.4
Q ss_pred cCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeeccccccc
Q 024086 87 LSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 87 vS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
=|.++...+.++++...++++|+.....-- ..-..+.+.|+++|+.++..+. .++
T Consensus 2 E~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 2 ESLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TTSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 356788899999998888999987554321 1126899999999999999986 554
No 61
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=54.09 E-value=1e+02 Score=30.38 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhcCCCcceeecc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 110 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 110 (272)
+.++++.+ ..+|.||+=+++..........+.+...+.+....-.+..+||- +.+++.+.++.+...+|++|+.
T Consensus 12 ~~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLH 86 (610)
T PRK13803 12 DSALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLH 86 (610)
T ss_pred cHHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 45666555 44899999998666443444445523444443333357789996 6789999999999999999997
Q ss_pred cCc
Q 024086 111 WSL 113 (272)
Q Consensus 111 ~n~ 113 (272)
-+.
T Consensus 87 G~e 89 (610)
T PRK13803 87 GAE 89 (610)
T ss_pred CCC
Confidence 654
No 62
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=53.25 E-value=3.1e+02 Score=29.43 Aligned_cols=106 Identities=13% Similarity=0.063 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHH-cCcc--ceeecCCCCHHHHHHHhcCCCcceee
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVV-EGKI--KYIGLSEASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~-~G~i--r~iGvS~~~~~~l~~~~~~~~~~~~q 108 (272)
+.+.+.+...+. ..-|-+.||+-.= ....+-++.+..+..+.+ .-.+ --|.+-+.+++.++.++....-..+-
T Consensus 366 d~~~a~~~A~~q-ve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~II 441 (1178)
T TIGR02082 366 DYDEALDIAKQQ-VENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIV 441 (1178)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEE
Confidence 444444444443 3668899998752 111233333444444443 3222 34777889999999999974334444
Q ss_pred cccCccc--cchhhhHHHHHHHhCCceeeccccccc
Q 024086 109 MEWSLLT--RDIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 109 ~~~n~~~--~~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
...|... ... .++++.++++|..++++.--..|
T Consensus 442 NsIs~~~g~~~~-~~~~~l~~~yga~vV~m~~de~G 476 (1178)
T TIGR02082 442 NSISLKDGEERF-IETAKLIKEYGAAVVVMAFDEEG 476 (1178)
T ss_pred EeCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCC
Confidence 4555542 232 47999999999999998533333
No 63
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=52.88 E-value=94 Score=26.62 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=34.2
Q ss_pred hhHHHHHHHhCCceeecccccccccCCCCcCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCC
Q 024086 120 EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC 189 (272)
Q Consensus 120 ~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~ 189 (272)
+..+++|+..|...+...|...|... ...+..++..+.++.+.++|+++|+
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~l~~~a~~~gv 143 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT-------------------PPNVIWGRLAENLSELCEYAENIGM 143 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC-------------------CHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56789999999999877665433100 0012345566777888889999886
No 64
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=52.54 E-value=51 Score=29.21 Aligned_cols=73 Identities=12% Similarity=0.026 Sum_probs=52.0
Q ss_pred HHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeeccccccc
Q 024086 70 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 70 ~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
++.+.++++...|. +.|=+-++.+.+..+++....+.+|+.-...-. ..-.++...|+++|+.++.++-+..|
T Consensus 217 ~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 217 DDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 55666677665555 334455788888888888888999987665421 12267899999999999987665544
No 65
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=51.88 E-value=1.8e+02 Score=26.14 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCcc-ceeecCCCCHHHHHHHhcCCCcceeecccCccccchhhhHHHHHHHhCCceeecccccccc
Q 024086 70 IGELKMLVVEGKI-KYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 70 ~~al~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
++.+.+++++-.| -+.|=|-++.+.+.+++.....+++|+..+.+-. -.+.++.|+++|+.++..+.+.+++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG--it~~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG--VRAALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC--HHHHHHHHHHcCCcEEEeCCcccHH
Confidence 4445555444222 2445566777888888888888999988776543 2567889999999999887776553
No 66
>PLN02363 phosphoribosylanthranilate isomerase
Probab=51.70 E-value=72 Score=27.65 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC-CCCHHHHHHHhcCCCcceeecc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS-EASPDTIRRAHAVHPITAVQME 110 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 110 (272)
+.+.++.+. ++|.||+=+++..........+ ....+.+......+..+||. +.+++.+.++++...++++|+.
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 556666554 4899999987544322223333 33333333333246679996 6788999999999999999997
Q ss_pred cCc
Q 024086 111 WSL 113 (272)
Q Consensus 111 ~n~ 113 (272)
-+-
T Consensus 130 G~e 132 (256)
T PLN02363 130 GNG 132 (256)
T ss_pred CCC
Confidence 543
No 67
>PRK10200 putative racemase; Provisional
Probab=50.50 E-value=75 Score=26.94 Aligned_cols=65 Identities=22% Similarity=0.061 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCC------------CCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHH
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDP------------SVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRR 97 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~------------~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~ 97 (272)
+.++.++-++..-.+++-++++.+.+|+++. +.+...+.+.++.|.+.| +..|-+....+....+
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~~~~ 91 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHKVAD 91 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHHHHH
Confidence 6778888888888889999999999999842 123456788888888887 6888887776655433
No 68
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=50.43 E-value=1.2e+02 Score=27.63 Aligned_cols=95 Identities=16% Similarity=0.200 Sum_probs=66.3
Q ss_pred CCCCcEEEEecccccCCCC------cccccCCCHHHHHHHHHHHHhhhCCC----cccEEEeccCCCCCCHHHHHHHHHH
Q 024086 6 LPRKKIQLASKFGVVSMAP------TSVIVKGTPEYVRSCCEASLKRLGVD----YIDLYYQHRVDPSVPIEDTIGELKM 75 (272)
Q Consensus 6 ~~R~~~~IstK~~~~~~~~------~~~~~~~s~~~i~~~le~SL~~L~~d----~iDl~~lH~~~~~~~~~e~~~al~~ 75 (272)
..|.-+.|||=+|..-.+. .+...+++...|..|+....++++.. --.++++---+|..+++.+..+++-
T Consensus 98 ~~r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i 177 (349)
T COG0820 98 KDRNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEI 177 (349)
T ss_pred cCCceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHh
Confidence 4677899999998765542 24567899999999999999999864 2334444444555677889999988
Q ss_pred HHH-cCc---cceeecCCCC-HHHHHHHhc
Q 024086 76 LVV-EGK---IKYIGLSEAS-PDTIRRAHA 100 (272)
Q Consensus 76 l~~-~G~---ir~iGvS~~~-~~~l~~~~~ 100 (272)
+.+ .|. .|.|-+|+-. ...+.++.+
T Consensus 178 ~~~~~G~~ls~R~iTvSTsGi~~~I~~l~~ 207 (349)
T COG0820 178 INDDEGLGLSKRRITVSTSGIVPRIRKLAD 207 (349)
T ss_pred hcCcccccccceEEEEecCCCchhHHHHHh
Confidence 873 332 1667777755 456666664
No 69
>TIGR00035 asp_race aspartate racemase.
Probab=50.41 E-value=63 Score=27.23 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCC------------CCHHHHHHHHHHHHHcCccceeecCCCCHHHH
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS------------VPIEDTIGELKMLVVEGKIKYIGLSEASPDTI 95 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~------------~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l 95 (272)
+.+++++-++.+-.+.+-++++++.+++++.. .....+.+.++.|.+.| +.+|-+.......+
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~ 89 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKF 89 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHH
Confidence 67788888888888899999999999998531 12235677777777765 78999888776654
No 70
>smart00642 Aamy Alpha-amylase domain.
Probab=50.33 E-value=27 Score=28.00 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=19.1
Q ss_pred hhhHHHHHHHhCCceeecccccc
Q 024086 119 EEEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 119 ~~~~~~~~~~~gv~vi~~~~la~ 141 (272)
.+++++.|+++||.|+.=-++..
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC
Confidence 37899999999999987766654
No 71
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=50.25 E-value=3.5e+02 Score=29.19 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=76.1
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcC-cc--ceeecCCCCHHHHHHHhcCCCccee
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPIEDTIGELKMLVVEG-KI--KYIGLSEASPDTIRRAHAVHPITAV 107 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~-~~~~e~~~al~~l~~~G-~i--r~iGvS~~~~~~l~~~~~~~~~~~~ 107 (272)
+.+.+.+...+. -.-|.+.||+- ++.. .+.++.+..+..+.+.- .+ --|.+-+.+++.++.++....-..+
T Consensus 382 d~~~al~~A~~q-ve~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~I 456 (1229)
T PRK09490 382 DYDEALDVARQQ-VENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGI 456 (1229)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCE
Confidence 334444443333 35678999995 3321 23334443333333321 11 2477888999999999997443445
Q ss_pred ecccCccc--cchhhhHHHHHHHhCCceeecccccccccCCCCcCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHH
Q 024086 108 QMEWSLLT--RDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAK 185 (272)
Q Consensus 108 q~~~n~~~--~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~ 185 (272)
-...|... .++ .++++.|+++|..|+++.--..|. +...++..+..+++..++.
T Consensus 457 INSIs~~~~~~~~-~~~~~l~~kyga~vV~m~~de~G~-----------------------~~t~e~r~~ia~r~~~~~~ 512 (1229)
T PRK09490 457 VNSISLKEGEEKF-IEHARLVRRYGAAVVVMAFDEQGQ-----------------------ADTRERKIEICKRAYDILT 512 (1229)
T ss_pred EEeCCCCCCCccH-HHHHHHHHHhCCCEEEEecCCCCC-----------------------CCCHHHHHHHHHHHHHHHH
Confidence 55556543 222 479999999999999985333332 2224555666666777665
Q ss_pred h-cCCC
Q 024086 186 R-NKCT 190 (272)
Q Consensus 186 ~-~~~s 190 (272)
+ +|++
T Consensus 513 ~~~Gi~ 518 (1229)
T PRK09490 513 EEVGFP 518 (1229)
T ss_pred HHcCCC
Confidence 4 7764
No 72
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=49.97 E-value=1.4e+02 Score=25.69 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHc-CccceeecC---CCCHHHHHHHhc
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP-----SVPIEDTIGELKMLVVE-GKIKYIGLS---EASPDTIRRAHA 100 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~-----~~~~~e~~~al~~l~~~-G~ir~iGvS---~~~~~~l~~~~~ 100 (272)
.++.+...+-++ .|.++|+++|.+-+...... .......++.++.+++. +..+...+. ......++.+.+
T Consensus 18 ~~~~~~k~~i~~-~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRAIAR-ALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 456666655554 58999999999986532110 00111234555555332 345655553 224566666665
Q ss_pred CCCcceeecccCccccchhhhHHHHHHHhCCceeec
Q 024086 101 VHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 101 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~ 136 (272)
. .++.+.+.+..-+...-.+.+++++.+|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 4566666554433223367899999999766543
No 73
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=49.81 E-value=43 Score=31.82 Aligned_cols=80 Identities=20% Similarity=0.241 Sum_probs=57.1
Q ss_pred CCcEEEEecccccCCCCc-------c--cccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 024086 8 RKKIQLASKFGVVSMAPT-------S--VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVV 78 (272)
Q Consensus 8 R~~~~IstK~~~~~~~~~-------~--~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~ 78 (272)
+.++||++=+|.-....| . .....++..| -+|+.+.|+|.+ ..+++|+++..++.++
T Consensus 157 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri-------~kR~~~gyld~~-------~~~ldeal~~~~~a~~ 222 (545)
T TIGR01228 157 KGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRI-------DKRLETKYCDEQ-------TDSLDEALARAEEAKA 222 (545)
T ss_pred ceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHH-------HHHHhcCcceeE-------cCCHHHHHHHHHHHHH
Confidence 556777777764433222 0 0123344444 457778899854 3568999999999999
Q ss_pred cCccceeecCCCCHHHHHHHhcC
Q 024086 79 EGKIKYIGLSEASPDTIRRAHAV 101 (272)
Q Consensus 79 ~G~ir~iGvS~~~~~~l~~~~~~ 101 (272)
+|+...||+-..-.+.+.++++.
T Consensus 223 ~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 223 EGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred cCCceEEEeeccHHHHHHHHHHc
Confidence 99999999998888888888875
No 74
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=49.61 E-value=1.1e+02 Score=25.94 Aligned_cols=80 Identities=10% Similarity=0.120 Sum_probs=51.8
Q ss_pred CHHHHHHHhcCCCcceeec----ccCccccchh---hhHHHHHHHhCCceeecccccccccCCCCcCCCCCCCcccccCC
Q 024086 91 SPDTIRRAHAVHPITAVQM----EWSLLTRDIE---EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHP 163 (272)
Q Consensus 91 ~~~~l~~~~~~~~~~~~q~----~~n~~~~~~~---~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~~~~~~~~ 163 (272)
++.++..+.+...+.++.+ +||..+.... +++.++++.-|-.-+...|+..|-..+.
T Consensus 50 p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~---------------- 113 (272)
T COG4130 50 PAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT---------------- 113 (272)
T ss_pred CHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc----------------
Confidence 4555666555555444433 5555554322 6789999999999999999988632221
Q ss_pred CCCCCchhhhHHHHHHHHHHHHhcCC
Q 024086 164 RFTGENLGKNKQIYARVENLAKRNKC 189 (272)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~la~~~~~ 189 (272)
..........+.+++.+-+++|+
T Consensus 114 ---~vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 114 ---AVRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ---ccchHHHHHHHHHhhHHHHHhCc
Confidence 12234556778888888888886
No 75
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.42 E-value=97 Score=28.17 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=59.7
Q ss_pred CCCcEEEEecccccCCCC----c--ccccCCCHHHHHHHHHHHHhhhCCCcccEEEecc-CCCCCCHHHHHHHHHHHHHc
Q 024086 7 PRKKIQLASKFGVVSMAP----T--SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHR-VDPSVPIEDTIGELKMLVVE 79 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~----~--~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~-~~~~~~~~e~~~al~~l~~~ 79 (272)
.|..++|||=+|..-.+. + +....++.+.|..++...-+. +.++-+.+-. =.|..+++++++++..+.+.
T Consensus 101 ~r~t~cvSsQvGC~~~C~FC~Tg~~g~~rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~ 177 (345)
T PRK14466 101 DRATLCVSSQVGCKMNCLFCMTGKQGFTGNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAP 177 (345)
T ss_pred CceEEEEEcCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhc
Confidence 577889999888655431 2 223458999999998876322 2244444433 34456678999999999876
Q ss_pred Ccc----ceeecCCCCH-HHHHHHhcC
Q 024086 80 GKI----KYIGLSEASP-DTIRRAHAV 101 (272)
Q Consensus 80 G~i----r~iGvS~~~~-~~l~~~~~~ 101 (272)
.-. +.|-||+-.. ..+.++.+.
T Consensus 178 ~g~~~s~r~ItVsT~G~~~~i~~l~~~ 204 (345)
T PRK14466 178 YGYGWSPKRITVSTVGLKKGLKRFLEE 204 (345)
T ss_pred cccCcCCceEEEEcCCCchHHHHHhhc
Confidence 444 6788887654 346665553
No 76
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=49.04 E-value=1e+02 Score=28.03 Aligned_cols=79 Identities=10% Similarity=0.204 Sum_probs=54.5
Q ss_pred CCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceee
Q 024086 7 PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIG 86 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iG 86 (272)
.+.-++|.||+-.... ..+.+.+.+-+.+-++.+|....|++.+-. -....++++++.+.++.+.+.+-.+|
T Consensus 90 ~~piilV~NK~DLl~k-------~~~~~~~~~~l~~~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG 161 (360)
T TIGR03597 90 GNPVLLVGNKIDLLPK-------SVNLSKIKEWMKKRAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVG 161 (360)
T ss_pred CCCEEEEEEchhhCCC-------CCCHHHHHHHHHHHHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEEC
Confidence 3445778999875421 234566666666667777765446666543 34467889999998887777899999
Q ss_pred cCCCCHH
Q 024086 87 LSEASPD 93 (272)
Q Consensus 87 vS~~~~~ 93 (272)
.+|-.=.
T Consensus 162 ~~nvGKS 168 (360)
T TIGR03597 162 VTNVGKS 168 (360)
T ss_pred CCCCCHH
Confidence 9997643
No 77
>PRK05414 urocanate hydratase; Provisional
Probab=48.80 E-value=46 Score=31.78 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=57.9
Q ss_pred CCCcEEEEecccccCCCCc-------c--cccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHH
Q 024086 7 PRKKIQLASKFGVVSMAPT-------S--VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLV 77 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~~-------~--~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~ 77 (272)
-+.++||++=+|.-....| . .....++..| -+|+.+.|+|.+ ..+++|+++..++.+
T Consensus 165 L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri-------~kR~~~gyld~~-------~~~Ldeal~~~~~a~ 230 (556)
T PRK05414 165 LAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRI-------DKRLRTGYLDEK-------ADDLDEALALAEEAK 230 (556)
T ss_pred CceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHH-------HHHHhCCcceeE-------cCCHHHHHHHHHHHH
Confidence 3566788877764433322 0 1123344444 467788899854 356899999999999
Q ss_pred HcCccceeecCCCCHHHHHHHhcC
Q 024086 78 VEGKIKYIGLSEASPDTIRRAHAV 101 (272)
Q Consensus 78 ~~G~ir~iGvS~~~~~~l~~~~~~ 101 (272)
++|+...||+-..-++.+.++++.
T Consensus 231 ~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 231 AAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred HcCCceEEEEeccHHHHHHHHHHc
Confidence 999999999988888888888875
No 78
>PRK13796 GTPase YqeH; Provisional
Probab=48.45 E-value=1e+02 Score=28.17 Aligned_cols=80 Identities=11% Similarity=0.178 Sum_probs=56.3
Q ss_pred CCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceee
Q 024086 7 PRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIG 86 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iG 86 (272)
.+.-++|.||+-.... ....+.+..-+....+.+|....|++.+..-. ...++++++.+.+..+.+.+-.+|
T Consensus 96 ~kpviLViNK~DLl~~-------~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG 167 (365)
T PRK13796 96 NNPVLLVGNKADLLPK-------SVKKNKVKNWLRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVG 167 (365)
T ss_pred CCCEEEEEEchhhCCC-------ccCHHHHHHHHHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEc
Confidence 3455779999865421 22456666666766777776555777776543 356889999998888888899999
Q ss_pred cCCCCHHH
Q 024086 87 LSEASPDT 94 (272)
Q Consensus 87 vS~~~~~~ 94 (272)
.+|-.=..
T Consensus 168 ~~NvGKST 175 (365)
T PRK13796 168 VTNVGKST 175 (365)
T ss_pred CCCCcHHH
Confidence 99986443
No 79
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=48.07 E-value=1.8e+02 Score=25.08 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEE-eccCCCC-CCHH-H---HHHHHHHHHHc-CccceeecCCCCHHHHHHHhcCCC
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYY-QHRVDPS-VPIE-D---TIGELKMLVVE-GKIKYIGLSEASPDTIRRAHAVHP 103 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~-lH~~~~~-~~~~-e---~~~al~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 103 (272)
.+++.+.+...+.+ .-|.++||+-- --+|+.. ...+ | +...++.+++. +. -+.+-+++++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 46777777766665 56889999932 1223322 1222 3 56666666665 54 48889999999999998743
Q ss_pred cceeecccCccccchhhhHHHHHHHhCCceeecc
Q 024086 104 ITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 104 ~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~ 137 (272)
--++-+ +... ..++++.++++|..++.+.
T Consensus 97 ~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 222222 2221 3578899999999999853
No 80
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=47.92 E-value=58 Score=27.57 Aligned_cols=98 Identities=17% Similarity=0.177 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHcCccceeec----CCCCHHHHHHHhcCCCcceeecccCccccchhhhHHHHHHHhCCceeecccccc
Q 024086 66 IEDTIGELKMLVVEGKIKYIGL----SEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 66 ~~e~~~al~~l~~~G~ir~iGv----S~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~ 141 (272)
.+++.+++..++ +.+|.. |.+...+++.+++...+.+.-. +=....++++...-..|..++..+.-+.
T Consensus 75 ve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~P----LWg~d~~ell~e~~~~Gf~~~Iv~Vsa~ 146 (223)
T COG2102 75 VEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKVYAP----LWGRDPEELLEEMVEAGFEAIIVAVSAE 146 (223)
T ss_pred HHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEEeec----ccCCCHHHHHHHHHHcCCeEEEEEEecc
Confidence 456677777775 555544 3445556777766554443333 2222237888888888988888888887
Q ss_pred cccCCCCcCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCH
Q 024086 142 GLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTP 191 (272)
Q Consensus 142 G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~ 191 (272)
|+-..- .... + ..+..+.+..+++++|+++
T Consensus 147 gL~~~~----------lGr~--------i--~~~~~e~l~~l~~~ygi~~ 176 (223)
T COG2102 147 GLDESW----------LGRR--------I--DREFLEELKSLNRRYGIHP 176 (223)
T ss_pred CCChHH----------hCCc--------c--CHHHHHHHHHHHHhcCCCc
Confidence 762100 0000 0 1245678888999999876
No 81
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=47.00 E-value=93 Score=27.39 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceeec
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQM 109 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 109 (272)
.++.+...+ +-+.|.++|+++|.+-.+++|..--...+.++.+..+.+...++..++. .+...++.+++.. ++.+.+
T Consensus 22 ~~s~e~k~~-ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i 98 (287)
T PRK05692 22 FIPTADKIA-LIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAV 98 (287)
T ss_pred CcCHHHHHH-HHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEE
Confidence 456666554 5555899999999998666553211122335555555544445555554 4677788877752 234433
Q ss_pred ccCccc--------cch------hhhHHHHHHHhCCceee
Q 024086 110 EWSLLT--------RDI------EEEIIPLCRELGIGIVP 135 (272)
Q Consensus 110 ~~n~~~--------~~~------~~~~~~~~~~~gv~vi~ 135 (272)
.++.-+ ... -.+.+++++++|+.+.+
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 322211 111 14689999999988753
No 82
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=46.66 E-value=2.4e+02 Score=26.07 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=65.8
Q ss_pred HHHHHHHHHHH-----------hhhCCCcccEEEeccCCCC-----CCHHHHHHHHHHHHHcCccce-eecC---CCCHH
Q 024086 34 EYVRSCCEASL-----------KRLGVDYIDLYYQHRVDPS-----VPIEDTIGELKMLVVEGKIKY-IGLS---EASPD 93 (272)
Q Consensus 34 ~~i~~~le~SL-----------~~L~~d~iDl~~lH~~~~~-----~~~~e~~~al~~l~~~G~ir~-iGvS---~~~~~ 93 (272)
+.|.+.++... +.++ +|++.||.-..+ .+.++..++.++..+.=.+=- |+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55777776655 5666 588888865332 345567777777644332222 2222 46888
Q ss_pred HHHHHhcCCCc-ceeecccCccccchhhhHHHHHHHhCCceeecccccccc
Q 024086 94 TIRRAHAVHPI-TAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 94 ~l~~~~~~~~~-~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
.++++++...- .++...-|.-+ + .+++...|+++|..|+++++..-|.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~-N-y~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL-D-YEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh-h-HHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 88888876321 23333333321 2 3689999999999999999887654
No 83
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=46.43 E-value=1e+02 Score=26.68 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHHhhhCC--------------------------CcccEEEeccCCCCCCH---HHHHHHHHHHHHcC
Q 024086 30 KGTPEYVRSCCEASLKRLGV--------------------------DYIDLYYQHRVDPSVPI---EDTIGELKMLVVEG 80 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~--------------------------d~iDl~~lH~~~~~~~~---~e~~~al~~l~~~G 80 (272)
..++++ .+.++++|++.|. ...|+++|..|....+. .++++.|.+|+++|
T Consensus 111 ~~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg 189 (254)
T COG1121 111 RLNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEG 189 (254)
T ss_pred cccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCC
Confidence 345555 7888999998887 44688888888554333 47899999999998
Q ss_pred ccceeecCCCCHHHHHHHhc
Q 024086 81 KIKYIGLSEASPDTIRRAHA 100 (272)
Q Consensus 81 ~ir~iGvS~~~~~~l~~~~~ 100 (272)
+ .|=+.+|+...+.+..+
T Consensus 190 ~--tIl~vtHDL~~v~~~~D 207 (254)
T COG1121 190 K--TVLMVTHDLGLVMAYFD 207 (254)
T ss_pred C--EEEEEeCCcHHhHhhCC
Confidence 8 77778888877766655
No 84
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=46.28 E-value=1.3e+02 Score=27.69 Aligned_cols=87 Identities=14% Similarity=0.231 Sum_probs=55.5
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcCccceeec-----C--CCCHHHH---HHHhcCC------Ccce
Q 024086 54 LYYQHRVDPS-----------VPIEDTIGELKMLVVEGKIKYIGL-----S--EASPDTI---RRAHAVH------PITA 106 (272)
Q Consensus 54 l~~lH~~~~~-----------~~~~e~~~al~~l~~~G~ir~iGv-----S--~~~~~~l---~~~~~~~------~~~~ 106 (272)
.+.||.|+.+ .+++++++++.+..++.. |.|-+ . |.+.+.+ .+++... +..+
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~V 309 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHV 309 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEE
Confidence 3678888542 356789999988764432 23322 2 4445544 4445444 5689
Q ss_pred eecccCccccc----hh----hhHHHHHHHhCCceeecccccc
Q 024086 107 VQMEWSLLTRD----IE----EEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 107 ~q~~~n~~~~~----~~----~~~~~~~~~~gv~vi~~~~la~ 141 (272)
+.|+||+.... +. ....+....+|+.+..+...+.
T Consensus 310 NLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 310 NLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 99999986431 11 4567778888999988877654
No 85
>PLN02444 HMP-P synthase
Probab=45.09 E-value=1.6e+02 Score=28.59 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=57.0
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceee
Q 024086 29 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 108 (272)
.+++.+.+...|++..+. -+|.+-||.- -..+.++.++ | |..|+-+-....+..++....
T Consensus 295 ~~lt~d~~~d~ieeQaeq----GVDfmTIH~G-------v~~~~v~~~~--~--R~tgIVSRGGSi~a~Wml~~~----- 354 (642)
T PLN02444 295 ENLTWEVFRETLIEQAEQ----GVDYFTIHAG-------VLLRYIPLTA--K--RMTGIVSRGGSIHAKWCLAYH----- 354 (642)
T ss_pred hhCCHHHHHHHHHHHHHh----CCCEEEEChh-------hHHHHHHHHh--C--cccCceeCCcHHHHHHHHHcC-----
Confidence 367788888887777663 4678888863 1344455554 3 677887776665555543221
Q ss_pred cccCccccchhhhHHHHHHHhCCceeecccccccc
Q 024086 109 MEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 109 ~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
.=|++...+ +++++.|++++|.+- |+.|+
T Consensus 355 -kENPlYe~F-D~ileI~k~YDVtlS----LGDGL 383 (642)
T PLN02444 355 -KENFAYEHW-DDILDICNQYDIALS----IGDGL 383 (642)
T ss_pred -CcCchHHHH-HHHHHHHHHhCeeee----ccCCc
Confidence 235555544 789999999999874 45554
No 86
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=44.64 E-value=51 Score=27.47 Aligned_cols=88 Identities=10% Similarity=0.197 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCC-CCHHHHHHHhcCCCcceeecc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQME 110 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~ 110 (272)
+.+.....+ +.|-+-|+.-+-+ -+- ..+..+.+++++++..=-.||..+ .+.++++.+++..- +++
T Consensus 14 ~~~~a~~ia-~al~~gGi~~iEi---t~~-----tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~Fi--- 80 (201)
T PRK06015 14 DVEHAVPLA-RALAAGGLPAIEI---TLR-----TPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFI--- 80 (201)
T ss_pred CHHHHHHHH-HHHHHCCCCEEEE---eCC-----CccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEE---
Confidence 444444443 4455556544333 222 133566666666554335689877 58899999988643 222
Q ss_pred cCccccchhhhHHHHHHHhCCceee
Q 024086 111 WSLLTRDIEEEIIPLCRELGIGIVP 135 (272)
Q Consensus 111 ~n~~~~~~~~~~~~~~~~~gv~vi~ 135 (272)
+.+....+++++|+++|+.++.
T Consensus 81 ---vSP~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 81 ---VSPGTTQELLAAANDSDVPLLP 102 (201)
T ss_pred ---ECCCCCHHHHHHHHHcCCCEeC
Confidence 2233457999999999998887
No 87
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=44.42 E-value=2.3e+02 Score=25.26 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCccceeecCC---------CCHHHHHHHhcC
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSV-PIEDTIGELKMLVVEGKIKYIGLSE---------ASPDTIRRAHAV 101 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~-~~~e~~~al~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~ 101 (272)
+.+.+.+.++..-...+ |.-+.|-.-++.. +...+.+.++.+++.|-+..|.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 44555555544333323 3334454444443 2356777788888888776444433 233334444443
Q ss_pred CCcceeecccCcccc--chhhhHHHHHHHhCCceeecccccccc
Q 024086 102 HPITAVQMEWSLLTR--DIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 102 ~~~~~~q~~~n~~~~--~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
.....+.+..|-... ..-.+.++.+++.|+.+...+++.+|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 322234444432110 111467888888999999989998874
No 88
>PF01876 RNase_P_p30: RNase P subunit p30; InterPro: IPR002738 Members of this protein family are part of the ribonuclease P complex () that takes part in endonucleolytic cleavage of RNA, removing 5'-extra-nucleotide from tRNA precursor. This process is essential for tRNA processing.; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 1V77_A 2CZV_A.
Probab=43.82 E-value=51 Score=25.76 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=37.4
Q ss_pred ccceeecCCCCHHHHHHHhcCCCcceeecccC-ccccchhhhHHHHHHHhCCce-eeccccc
Q 024086 81 KIKYIGLSEASPDTIRRAHAVHPITAVQMEWS-LLTRDIEEEIIPLCRELGIGI-VPYSPLG 140 (272)
Q Consensus 81 ~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n-~~~~~~~~~~~~~~~~~gv~v-i~~~~la 140 (272)
+..-|.|...+.+.+..++....+|++.+.+. -....+....+..|.++|+.+ +.++|+-
T Consensus 24 ~~divav~p~~~~~~~~a~~~~~vDiIt~d~~~~~~~~~~~~~~~~a~~~gi~~EI~~~~~l 85 (150)
T PF01876_consen 24 KYDIVAVRPGSEKAFRAACSDPRVDIITFDLTERLPFYIKRKQARLAIERGIFFEISYSPLL 85 (150)
T ss_dssp --SEEEEE-S-HHHHHHHHHTT--SEEE-TTTTSSS-S--HHHHHHHHHHT-EEEEESHHHH
T ss_pred CceEEEEEcCCHHHHHHHHhcCCCCEEEeCcccccccccCHHHHHHHHHCCEEEEEEehHhh
Confidence 44566777777888888889888999998874 223334578999999999977 5666665
No 89
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=43.33 E-value=2.2e+02 Score=24.66 Aligned_cols=104 Identities=15% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCC------CCHHHHHHHHHHHHHcCccceeecCCC---CHHHHHHHhc
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS------VPIEDTIGELKMLVVEGKIKYIGLSEA---SPDTIRRAHA 100 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~------~~~~e~~~al~~l~~~G~ir~iGvS~~---~~~~l~~~~~ 100 (272)
.++.+...+ +-+.|.++|+|+|.+-+....... ..-.+.++.+..+.+ +..+..+++.. ..+.+..+.+
T Consensus 16 ~f~~~~~~~-ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVKA-IYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred cCCHHHHHH-HHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHhc
Confidence 566666554 555599999999999876654211 011455666655543 23555555433 3455555544
Q ss_pred CCCcceeecccCccccchhhhHHHHHHHhCCceeec
Q 024086 101 VHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 101 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~ 136 (272)
. .++.+.+.+..-.-+.-.+.+++++++|+.|...
T Consensus 94 ~-gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 S-VVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred C-CcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3 3566655543333222367889999999866543
No 90
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=43.15 E-value=1.2e+02 Score=25.67 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=52.2
Q ss_pred cCCCHHHHHHHHHHHHhhhCC-Ccc-------------------------cEEEeccCCCCCC---HHHHHHHHHHHHHc
Q 024086 29 VKGTPEYVRSCCEASLKRLGV-DYI-------------------------DLYYQHRVDPSVP---IEDTIGELKMLVVE 79 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~-d~i-------------------------Dl~~lH~~~~~~~---~~e~~~al~~l~~~ 79 (272)
++++...+.+.++..-++|++ +|+ +++.+..|..-.+ .....+.+.+++.+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 477888889999999999886 232 3444444432222 24678899999999
Q ss_pred CccceeecCCCCHHHHHHHhcC
Q 024086 80 GKIKYIGLSEASPDTIRRAHAV 101 (272)
Q Consensus 80 G~ir~iGvS~~~~~~l~~~~~~ 101 (272)
|+ .+=+|+|..+.++++++.
T Consensus 183 gr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 183 GR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred Cc--EEEEecccHHHHHHhhhe
Confidence 98 788999999999999874
No 91
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=42.23 E-value=2e+02 Score=27.89 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceeec
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQM 109 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 109 (272)
+++.+.+...|++..+. -+|.+-||.- -..+.++.++ + |..|+-+-....+..++....
T Consensus 291 ~lt~e~~~d~ieeQAeq----GVDf~TIHaG-------v~~~~v~~~~--~--R~tgIVSRGGSima~Wml~h~------ 349 (607)
T PRK09284 291 DLTWEIFRDTLIEQAEQ----GVDYFTIHAG-------VLLRYVPLTA--K--RVTGIVSRGGSIMAKWCLAHH------ 349 (607)
T ss_pred hCCHHHHHHHHHHHHHh----CCCEEEEChh-------hHHHHHHHHh--C--cccCcccCCHHHHHHHHHHcC------
Confidence 67788888888777663 4678888853 1344455554 2 778888877776666644321
Q ss_pred ccCccccchhhhHHHHHHHhCCceeecccccccc
Q 024086 110 EWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 110 ~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
.=|++...+ +++++.|++++|.+- |+.|+
T Consensus 350 kENplYe~F-D~ileI~k~YDVtlS----LGDGL 378 (607)
T PRK09284 350 KENFLYTHF-EEICEIMAAYDVSFS----LGDGL 378 (607)
T ss_pred CcCcHHHHH-HHHHHHHHHhCeeee----ccCCc
Confidence 235555443 789999999999874 45554
No 92
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=42.22 E-value=58 Score=27.23 Aligned_cols=88 Identities=16% Similarity=0.243 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCC-CCHHHHHHHhcCCCcceeecc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQME 110 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~ 110 (272)
+++... .+-+.|-.-|+..+-+=+ - ..+.++.+++++++..=-.||..+ .+.++++.+++..- +++.
T Consensus 18 ~~e~a~-~~~~al~~~Gi~~iEit~---~-----t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fiv-- 85 (204)
T TIGR01182 18 DVDDAL-PLAKALIEGGLRVLEVTL---R-----TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFIV-- 85 (204)
T ss_pred CHHHHH-HHHHHHHHcCCCEEEEeC---C-----CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEEE--
Confidence 444443 344556666755444322 1 134566666666654335689977 58899999988643 3332
Q ss_pred cCccccchhhhHHHHHHHhCCceee
Q 024086 111 WSLLTRDIEEEIIPLCRELGIGIVP 135 (272)
Q Consensus 111 ~n~~~~~~~~~~~~~~~~~gv~vi~ 135 (272)
.+....+++++|+++|+.++.
T Consensus 86 ----sP~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 ----SPGLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred ----CCCCCHHHHHHHHHcCCcEEC
Confidence 223346899999999998877
No 93
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=42.14 E-value=2.1e+02 Score=24.14 Aligned_cols=98 Identities=15% Similarity=0.275 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc------cceeecCCC-CHHHHHHHhcCCCcce
Q 024086 34 EYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGK------IKYIGLSEA-SPDTIRRAHAVHPITA 106 (272)
Q Consensus 34 ~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~------ir~iGvS~~-~~~~l~~~~~~~~~~~ 106 (272)
.+....|+...+--..-.|+-+++-..+....+.|.+.-.++|.+.|- ..+-|+++. +.-+..++.....|.+
T Consensus 76 ~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftI 155 (235)
T COG2949 76 RYYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTI 155 (235)
T ss_pred HhHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEE
Confidence 455666777667777778999999999888889999999999999996 345688874 4556677777677666
Q ss_pred eecccCccccchhhhHHHHHHHhCCceeecc
Q 024086 107 VQMEWSLLTRDIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 107 ~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~ 137 (272)
+-=.|+. +..+=.|+++|+.-+++.
T Consensus 156 ItQ~FHc------eRAlfiA~~~gIdAic~~ 180 (235)
T COG2949 156 ITQRFHC------ERALFIARQMGIDAICFA 180 (235)
T ss_pred Eeccccc------HHHHHHHHHhCCceEEec
Confidence 5444443 456778999999888764
No 94
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=41.97 E-value=1.8e+02 Score=24.91 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=53.9
Q ss_pred HHHHhhhCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCccceeecCC-CCHHHHHHHhcCCCcceeecccCccccc-
Q 024086 41 EASLKRLGVDYIDLYYQHRVDPSVPIE-DTIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQMEWSLLTRD- 117 (272)
Q Consensus 41 e~SL~~L~~d~iDl~~lH~~~~~~~~~-e~~~al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~- 117 (272)
-+-++.+|. |.+.+|..+...... --++.+.++++.-.+.-|+... .+.+.+.+++.....+.+.+---+....
T Consensus 161 ~~~l~~~G~---~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~ 237 (254)
T TIGR00735 161 AKEVEKLGA---GEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREI 237 (254)
T ss_pred HHHHHHcCC---CEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCC
Confidence 344456664 666666654432111 1255566666665666666654 4778888888887677766622222211
Q ss_pred hhhhHHHHHHHhCCce
Q 024086 118 IEEEIIPLCRELGIGI 133 (272)
Q Consensus 118 ~~~~~~~~~~~~gv~v 133 (272)
...++.+.|+++|+.+
T Consensus 238 ~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 238 TIGEVKEYLAERGIPV 253 (254)
T ss_pred CHHHHHHHHHHCCCcc
Confidence 1267889999998865
No 95
>PRK08392 hypothetical protein; Provisional
Probab=41.82 E-value=1.3e+02 Score=24.97 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=45.5
Q ss_pred HHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCC--------CHHHHHHHhcCCCcceeecccCc
Q 024086 42 ASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEA--------SPDTIRRAHAVHPITAVQMEWSL 113 (272)
Q Consensus 42 ~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~--------~~~~l~~~~~~~~~~~~q~~~n~ 113 (272)
+.++. .||+ |..+|.........+-.+.+.++.+.|.+.-+|=-.. ..+.+.++++...=.-+.++.|.
T Consensus 81 ~~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt 157 (215)
T PRK08392 81 DFAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS 157 (215)
T ss_pred HHHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC
Confidence 34443 5776 7888954332334566778888888887766654211 11233333222000112222222
Q ss_pred cccchhhhHHHHHHHhCCce
Q 024086 114 LTRDIEEEIIPLCRELGIGI 133 (272)
Q Consensus 114 ~~~~~~~~~~~~~~~~gv~v 133 (272)
..+.+...+++.|++.|+.+
T Consensus 158 ~~~~p~~~~l~~~~~~G~~~ 177 (215)
T PRK08392 158 RYRVPDLEFIRECIKRGIKL 177 (215)
T ss_pred CCCCCCHHHHHHHHHcCCEE
Confidence 22223457888888888654
No 96
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.75 E-value=1e+02 Score=27.73 Aligned_cols=73 Identities=19% Similarity=0.114 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCc-cceeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeeccccccc
Q 024086 70 IGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 70 ~~al~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
++.+.++++.-. =-+.|=|.++.+.+..+++...++++|+..+..-- ....++...|+.+|+.++..+....|
T Consensus 217 ~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~ 291 (354)
T cd03317 217 LIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESG 291 (354)
T ss_pred HHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccch
Confidence 556666665432 23556677899999999988888999997765432 12267899999999999876554443
No 97
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=41.63 E-value=1.5e+02 Score=27.17 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=64.1
Q ss_pred CCCcEEEEecccccCCCC----c--ccccCCCHHHHHHHHHHHHhhhCC-------------Ccc-cEEEeccCCCCCCH
Q 024086 7 PRKKIQLASKFGVVSMAP----T--SVIVKGTPEYVRSCCEASLKRLGV-------------DYI-DLYYQHRVDPSVPI 66 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~----~--~~~~~~s~~~i~~~le~SL~~L~~-------------d~i-Dl~~lH~~~~~~~~ 66 (272)
.|..+.|||=+|..-.+. + +....+++..|..|+....+.|+. ..| .|+++---.|-.++
T Consensus 105 ~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Ny 184 (371)
T PRK14461 105 DRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANY 184 (371)
T ss_pred CCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhH
Confidence 688899999998765542 2 345788999999999888776642 112 34444444555677
Q ss_pred HHHHHHHHHHHHc-Cc---cceeecCCCCH-HHHHHHhcC
Q 024086 67 EDTIGELKMLVVE-GK---IKYIGLSEASP-DTIRRAHAV 101 (272)
Q Consensus 67 ~e~~~al~~l~~~-G~---ir~iGvS~~~~-~~l~~~~~~ 101 (272)
+.++++++-+.+. |. -|.|-||+-.. ..+.++.+.
T Consensus 185 dnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~ 224 (371)
T PRK14461 185 DRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANE 224 (371)
T ss_pred HHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhc
Confidence 8999999999765 32 35777777643 456666553
No 98
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=41.45 E-value=2.8e+02 Score=26.37 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-ccceeecCC----C--CHHHHHHHhcCCC
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG-KIKYIGLSE----A--SPDTIRRAHAVHP 103 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G-~ir~iGvS~----~--~~~~l~~~~~~~~ 103 (272)
.+++.+.+.++...++.|+.+ +.+...+...+.+.+.+.++++++.| .-..+++++ . +.+.+ +++....
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell-~~l~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADIL-HLYRRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHH-HHHHHhC
Confidence 488999999999888888654 34444444445566778888888887 323344432 1 33333 3333334
Q ss_pred cceeecccCccccc------------hhhhHHHHHHHhCCceee
Q 024086 104 ITAVQMEWSLLTRD------------IEEEIIPLCRELGIGIVP 135 (272)
Q Consensus 104 ~~~~q~~~n~~~~~------------~~~~~~~~~~~~gv~vi~ 135 (272)
+..+.+..--.++. ...+.+..++++|+.+.+
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 44444432222211 114678899999987654
No 99
>PHA02128 hypothetical protein
Probab=41.03 E-value=72 Score=23.68 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcC------------------CCcceeec---ccCccccchhhhHHHH
Q 024086 67 EDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV------------------HPITAVQM---EWSLLTRDIEEEIIPL 125 (272)
Q Consensus 67 ~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~------------------~~~~~~q~---~~n~~~~~~~~~~~~~ 125 (272)
..++.-..++..+|-+|-|-+...+-..++..+.. +.+.+.++ +|.+..+....+++++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 46788889999999999999987766555555432 23344444 5556555445789999
Q ss_pred HHHhCCceeec
Q 024086 126 CRELGIGIVPY 136 (272)
Q Consensus 126 ~~~~gv~vi~~ 136 (272)
+-.+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999987654
No 100
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=40.82 E-value=2.8e+02 Score=26.55 Aligned_cols=100 Identities=22% Similarity=0.223 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc-----Ccccee--ecCCCC--------HHHHHHHhcC
Q 024086 37 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVE-----GKIKYI--GLSEAS--------PDTIRRAHAV 101 (272)
Q Consensus 37 ~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~-----G~ir~i--GvS~~~--------~~~l~~~~~~ 101 (272)
.+.+++..++++ +.-=|+.+.+.|..+.+.+-+.|++.+.++ |+|..+ |..+.. ...+++++..
T Consensus 272 ~~~~~~lr~~~~-~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~ 350 (487)
T TIGR02398 272 REMMERIRSELA-GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGR 350 (487)
T ss_pred HHHHHHHHHHcC-CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHH
Confidence 344566667777 666788999999999999999999998653 677776 554321 1233333322
Q ss_pred -----CCcc--eeecccCccccchhhhHHHHHHHhCCceeeccccccc
Q 024086 102 -----HPIT--AVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 102 -----~~~~--~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
..++ .+...+..+. .+++..+-+..++.++. |+-.|
T Consensus 351 IN~~fg~~~~~pv~~~~~~v~---~~el~alYr~ADV~lvT--~lrDG 393 (487)
T TIGR02398 351 INGRFARIGWTPLQFFTRSLP---YEEVSAWFAMADVMWIT--PLRDG 393 (487)
T ss_pred HhhccCCCCCccEEEEcCCCC---HHHHHHHHHhCCEEEEC--ccccc
Confidence 1112 1222222222 26777777777777666 55554
No 101
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=40.49 E-value=1.4e+02 Score=30.85 Aligned_cols=72 Identities=14% Similarity=0.039 Sum_probs=57.2
Q ss_pred cCCCHHHHHHHHHHHHhhhCC--------------------------CcccEEEeccCCCCCCH---HHHHHHHHHHHHc
Q 024086 29 VKGTPEYVRSCCEASLKRLGV--------------------------DYIDLYYQHRVDPSVPI---EDTIGELKMLVVE 79 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~--------------------------d~iDl~~lH~~~~~~~~---~e~~~al~~l~~~ 79 (272)
.+....++.+.++.+|+.++. -...+++|..|....+. ..+|+.+.++++.
T Consensus 668 rG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~ 747 (885)
T KOG0059|consen 668 RGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKN 747 (885)
T ss_pred cCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 355678999999999998875 23567777776544332 4799999999999
Q ss_pred CccceeecCCCCHHHHHHHhcCC
Q 024086 80 GKIKYIGLSEASPDTIRRAHAVH 102 (272)
Q Consensus 80 G~ir~iGvS~~~~~~l~~~~~~~ 102 (272)
|+ ++=+.+|+.++.+.++..-
T Consensus 748 g~--aiiLTSHsMeE~EaLCtR~ 768 (885)
T KOG0059|consen 748 GK--AIILTSHSMEEAEALCTRT 768 (885)
T ss_pred CC--EEEEEcCCHHHHHHHhhhh
Confidence 99 9999999999999988763
No 102
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=40.30 E-value=2.5e+02 Score=24.40 Aligned_cols=98 Identities=8% Similarity=-0.019 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCC----HHHHHHHHHHHHHcCccceeecCCCCH-----HHHHHHhcCC
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP----IEDTIGELKMLVVEGKIKYIGLSEASP-----DTIRRAHAVH 102 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~----~~e~~~al~~l~~~G~ir~iGvS~~~~-----~~l~~~~~~~ 102 (272)
..+.+.+-....++.++ +++..|=++..-.... +.++.+.++.+++.|+.-..=+--++. ...+.+....
T Consensus 35 ~~~~~~~f~~~ii~~l~-~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnTv~~~a~a~~~~~ 113 (261)
T TIGR02127 35 SAAGLQAFCLRIIDATA-EYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIGSTASAYAKAWLGHL 113 (261)
T ss_pred hHHHHHHHHHHHHHhcC-CcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChHHHHHHHHHHHHhhc
Confidence 45666677788999998 8999988887633221 234555566677777543332222222 2233333223
Q ss_pred CcceeecccCccccchhhhHHHHHHHhCC
Q 024086 103 PITAVQMEWSLLTRDIEEEIIPLCRELGI 131 (272)
Q Consensus 103 ~~~~~q~~~n~~~~~~~~~~~~~~~~~gv 131 (272)
.+|.+-+.- +.-...-+..++.+.++|.
T Consensus 114 g~D~vTvh~-~~G~d~l~~~~~~~~~~~~ 141 (261)
T TIGR02127 114 HADALTVSP-YLGLDSLRPFLEYARANGA 141 (261)
T ss_pred CCCEEEECC-cCCHHHHHHHHHHHhhcCC
Confidence 345544432 2222233556666666554
No 103
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=40.30 E-value=1.7e+02 Score=25.97 Aligned_cols=73 Identities=10% Similarity=0.004 Sum_probs=49.2
Q ss_pred HHHHHHHHcC-ccceeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeecccccccc
Q 024086 71 GELKMLVVEG-KIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 71 ~al~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
+.+..+.+.- .=-+.|=|.++.+.+..+++....+++|+.....-- ....++.+.|+.+|+.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 3444454442 222445566778888888887777888887665431 122689999999999999887776654
No 104
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=39.81 E-value=1.4e+02 Score=27.70 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=50.5
Q ss_pred HHHHHHHHHHcCcc---ceeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeec
Q 024086 69 TIGELKMLVVEGKI---KYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 69 ~~~al~~l~~~G~i---r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~ 136 (272)
-++.+.+|++.-.+ -..|-+.++...+..+++...+|++|+.....-- ....++...|+.+|+.++.+
T Consensus 247 d~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 247 DYWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred cHHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 46777777776542 2337777888999999999889999997765421 11268999999999998775
No 105
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.75 E-value=3e+02 Score=24.96 Aligned_cols=94 Identities=17% Similarity=0.099 Sum_probs=63.7
Q ss_pred CCCcEEEEecccccCCCC------cccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc-
Q 024086 7 PRKKIQLASKFGVVSMAP------TSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVE- 79 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~------~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~- 79 (272)
.|..+.|||=+|..-.+. .+.....++..|..++-..-+.++....-++++--=.|..+++.++++++-+++.
T Consensus 103 ~~~t~CvSsQvGC~m~C~FC~tg~~g~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~ 182 (342)
T PRK14465 103 GRKTICISSQIGCTLNCKFCATAKLEFQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPD 182 (342)
T ss_pred CceEEEEEecCCCCCCCCCCcCCCCCccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChh
Confidence 467799999887654431 2234577899999998776666665555666666556666778899999988775
Q ss_pred C---ccceeecCCCCH-HHHHHHhc
Q 024086 80 G---KIKYIGLSEASP-DTIRRAHA 100 (272)
Q Consensus 80 G---~ir~iGvS~~~~-~~l~~~~~ 100 (272)
| .-+.|-||+... ..+.++.+
T Consensus 183 ~~~~~~r~itvST~G~~~~i~~l~~ 207 (342)
T PRK14465 183 AFNLGAKRITISTSGVVNGIRRFIE 207 (342)
T ss_pred hhcCCCCeEEEeCCCchHHHHHHHh
Confidence 3 356888887654 45555554
No 106
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=38.72 E-value=89 Score=28.48 Aligned_cols=88 Identities=10% Similarity=0.179 Sum_probs=52.6
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHH-cCc---cceeecC--CCCHHH---HHHHhcCCCcceeecccCc
Q 024086 54 LYYQHRVDPS-----------VPIEDTIGELKMLVV-EGK---IKYIGLS--EASPDT---IRRAHAVHPITAVQMEWSL 113 (272)
Q Consensus 54 l~~lH~~~~~-----------~~~~e~~~al~~l~~-~G~---ir~iGvS--~~~~~~---l~~~~~~~~~~~~q~~~n~ 113 (272)
.+-||.++++ .+++++++++.++.+ .|+ |+++=+. |.+.+. +.+++...++.++.++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3679998642 236788888877644 442 3333333 233344 4455555556788889997
Q ss_pred cccc----hh----hhHHHHHHHhCCceeecccccc
Q 024086 114 LTRD----IE----EEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 114 ~~~~----~~----~~~~~~~~~~gv~vi~~~~la~ 141 (272)
.... +. ..+.+...++|+.+......+.
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 5421 11 2355666778999988766654
No 107
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=38.68 E-value=71 Score=22.37 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=23.2
Q ss_pred hhhhHHHHHHHHHHHHhcCCCHHHHHH
Q 024086 170 LGKNKQIYARVENLAKRNKCTPAQLSL 196 (272)
Q Consensus 170 ~~~~~~~~~~l~~la~~~~~s~~~lal 196 (272)
.++..+.+..|.++|++.|++.+++|.
T Consensus 47 P~~V~~sl~kL~~La~~N~v~feeLc~ 73 (82)
T PF11020_consen 47 PEKVMDSLSKLYKLAKENNVSFEELCV 73 (82)
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 356678889999999999999999875
No 108
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=38.59 E-value=43 Score=22.21 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred HHHHHHHhcCCCHHHHHHHHHH
Q 024086 179 RVENLAKRNKCTPAQLSLAWLL 200 (272)
Q Consensus 179 ~l~~la~~~~~s~~~lal~~~l 200 (272)
.+.+||+.+|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999985
No 109
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=38.36 E-value=67 Score=28.11 Aligned_cols=76 Identities=20% Similarity=0.274 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceeecccCccc
Q 024086 36 VRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLT 115 (272)
Q Consensus 36 i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~ 115 (272)
.+.-...+|..+. .+++- +|....-...+++-+.+++.+++ -..+-|.+.+
T Consensus 18 Ae~v~~A~l~QF~--~~~~~-~~~~p~v~~~~~~~~i~~~~~~~--------------------------~~iV~~Tlv~ 68 (269)
T PRK05339 18 AETVGRAALSQFP--NVEFE-EHRYPFVRTEEKADEVLEEINAE--------------------------RPIVFYTLVD 68 (269)
T ss_pred HHHHHHHHHHhCC--CCCee-EEEeCCcCCHHHHHHHHHHHHhc--------------------------CCEEEEeCCC
Confidence 3444444555553 23333 34433334566777777777641 1134566777
Q ss_pred cchhhhHHHHHHHhCCceeec-cccc
Q 024086 116 RDIEEEIIPLCRELGIGIVPY-SPLG 140 (272)
Q Consensus 116 ~~~~~~~~~~~~~~gv~vi~~-~~la 140 (272)
+...+.+.+.|..+|+.++-. +|+-
T Consensus 69 ~elr~~l~~~~~~~~i~~vdll~p~i 94 (269)
T PRK05339 69 PELREILEERCAEFGIPCIDILGPLI 94 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEeccHHHH
Confidence 766556668999998876653 4544
No 110
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=38.29 E-value=81 Score=28.01 Aligned_cols=144 Identities=19% Similarity=0.175 Sum_probs=80.4
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSV------PIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPIT 105 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~------~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 105 (272)
..+.+++.|.+-+++.++|++ +.|.....+. ...+++++|++..+++.-. +--|..- ...++. ....
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~v--Vvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~~aS~~Y---A~AAl~-~g~~ 202 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRV--VVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-ISASMLY---AYAALE-AGVP 202 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCE--EEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-HHHHHHH---HHHHHH-TTEE
T ss_pred HHHHHHHHHHHHHHHhCCCcE--EEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-CChHHHH---HHHHHH-CCCC
Confidence 356778889999999998743 3333332222 2235788888888876633 3222211 112222 2222
Q ss_pred eeec-ccCccccchhhhHHHHHHHhCCceeec---ccccccccCCCCcCCCCCCCcccccCCCCCCCchhhhHHHHHHHH
Q 024086 106 AVQM-EWSLLTRDIEEEIIPLCRELGIGIVPY---SPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVE 181 (272)
Q Consensus 106 ~~q~-~~n~~~~~~~~~~~~~~~~~gv~vi~~---~~la~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 181 (272)
++-. +-+.++- ..+.+.++++|+.+++- ++++. ...-.+-++.
T Consensus 203 fvN~tP~~~a~~---P~l~ela~~~gvpi~GdD~KT~lAA------------------------------plvlDLirl~ 249 (295)
T PF07994_consen 203 FVNGTPSNIADD---PALVELAEEKGVPIAGDDGKTPLAA------------------------------PLVLDLIRLA 249 (295)
T ss_dssp EEE-SSSTTTTS---HHHHHHHHHHTEEEEESSBS-HHHH------------------------------HHHHHHHHHH
T ss_pred eEeccCccccCC---HHHHHHHHHcCCCeecchHhhhhhh------------------------------HHHHHHHHHH
Confidence 3222 2223211 47899999999988763 23332 3344566888
Q ss_pred HHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHH
Q 024086 182 NLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNL 218 (272)
Q Consensus 182 ~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l 218 (272)
++|.+.|+.-.+-.+.|-+-.|. +=.|....-.+
T Consensus 250 ~la~r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 250 KLALRRGMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp HHHHHTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HHHHHcCCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 99999999889999999999983 33344444433
No 111
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=37.70 E-value=1.2e+02 Score=25.98 Aligned_cols=73 Identities=23% Similarity=0.148 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeeccccccc
Q 024086 69 TIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 69 ~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
-++.+.++. .+.=-+.|=|-++...+..+++....+++|+.....-- ....++...|+.+|+.++..+-+..+
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 345555554 33333455566777778888887778888887654321 12267899999999999887555444
No 112
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=37.64 E-value=87 Score=29.52 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=46.6
Q ss_pred HhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcC-CCccee
Q 024086 44 LKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV-HPITAV 107 (272)
Q Consensus 44 L~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 107 (272)
-.||.+.|+|. ....++|+++..++..++|+-.+||+-..-++.+.++++. ..+|.+
T Consensus 204 ~~Rl~t~y~d~-------~a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 204 DKRLRTGYLDE-------IAETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred HHHHhcchhhh-------hcCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 35778899983 3356899999999999999999999998888888888886 345554
No 113
>PRK07945 hypothetical protein; Provisional
Probab=37.56 E-value=3e+02 Score=24.74 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=22.2
Q ss_pred CCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceee
Q 024086 49 VDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIG 86 (272)
Q Consensus 49 ~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iG 86 (272)
.||+ |..+|+... ...++..+.+.++.+.|.+.-+|
T Consensus 191 ~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlg 226 (335)
T PRK07945 191 LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLG 226 (335)
T ss_pred CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEe
Confidence 4665 677776533 22345567777777777766666
No 114
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=36.97 E-value=1e+02 Score=25.99 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=26.9
Q ss_pred Ccceeec--ccCccccchhhhHHHHHHHhCCceeec
Q 024086 103 PITAVQM--EWSLLTRDIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 103 ~~~~~q~--~~n~~~~~~~~~~~~~~~~~gv~vi~~ 136 (272)
...++-+ +||++++...-++.+..++.|+.|+..
T Consensus 183 ~~~Ivl~GrpY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 183 KPAIVLLGRPYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred CceEEEEcCCCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 3444444 899999888889999999999998864
No 115
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=36.92 E-value=3.5e+02 Score=25.17 Aligned_cols=111 Identities=13% Similarity=-0.050 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCC---C-CHHHHHHHhcCCCcc
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSE---A-SPDTIRRAHAVHPIT 105 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~---~-~~~~l~~~~~~~~~~ 105 (272)
..+.+.+.+.+.+.+..... ..+-+.+-...+..-...+.+.++.+++.|.--+|+.+| + +.+.++++.+. .++
T Consensus 53 ~~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~-gld 130 (404)
T TIGR03278 53 FIPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDN-GVR 130 (404)
T ss_pred cCCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHc-CCC
Confidence 45788899999988876643 356677776655555678999999999999877777444 3 55666666553 245
Q ss_pred eeecccCccccchh---------h---hHHHHHHHhCCceeecccccccc
Q 024086 106 AVQMEWSLLTRDIE---------E---EIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 106 ~~q~~~n~~~~~~~---------~---~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
.+++..+..++... + +.+....+ ++.+++..++..|+
T Consensus 131 ~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~~v~~~ivlIPGi 179 (404)
T TIGR03278 131 EVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SCEVHAASVIIPGV 179 (404)
T ss_pred EEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cCCEEEEEEEeCCc
Confidence 66666665554211 1 22333444 46666666776664
No 116
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=36.80 E-value=1.2e+02 Score=21.31 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=36.3
Q ss_pred CCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-ccceeecCCC-CHHHHHHHhcCCCcceeecccC
Q 024086 48 GVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG-KIKYIGLSEA-SPDTIRRAHAVHPITAVQMEWS 112 (272)
Q Consensus 48 ~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G-~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~n 112 (272)
+...+|++++-..-+.....++++.+ ++.+ .++-|.+|+. +.....++++.+-.+++.-+++
T Consensus 40 ~~~~~d~iiid~~~~~~~~~~~~~~i---~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~ 103 (112)
T PF00072_consen 40 KKHPPDLIIIDLELPDGDGLELLEQI---RQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFS 103 (112)
T ss_dssp HHSTESEEEEESSSSSSBHHHHHHHH---HHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSS
T ss_pred cccCceEEEEEeeecccccccccccc---ccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCC
Confidence 33448899888665554444455544 4444 6667777654 5566677766654445544443
No 117
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=36.44 E-value=1.6e+02 Score=27.49 Aligned_cols=69 Identities=12% Similarity=0.072 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcC----ccceeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeecc
Q 024086 69 TIGELKMLVVEG----KIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 69 ~~~al~~l~~~G----~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~ 137 (272)
-++.+.+|++.. .=-+.|=|.++.+.+..+++...++++|+.....-- ....++...|+.+|+.+..+.
T Consensus 279 d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a~dil~~d~~~~GGit~~~kia~lA~a~gi~~~pH~ 352 (415)
T cd03324 279 DILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGAIDVVQIDSCRLGGVNENLAVLLMAAKFGVPVCPHA 352 (415)
T ss_pred cHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCeEEEcC
Confidence 356666676653 333445567788899999988888999987665431 123689999999999988764
No 118
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=36.37 E-value=1.7e+02 Score=26.69 Aligned_cols=106 Identities=11% Similarity=0.172 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHH-hhhCCCcccEEEeccCCCC-----------CCHHHHHHHHHHHHHcCccceeec-------CCCCH
Q 024086 32 TPEYVRSCCEASL-KRLGVDYIDLYYQHRVDPS-----------VPIEDTIGELKMLVVEGKIKYIGL-------SEASP 92 (272)
Q Consensus 32 s~~~i~~~le~SL-~~L~~d~iDl~~lH~~~~~-----------~~~~e~~~al~~l~~~G~ir~iGv-------S~~~~ 92 (272)
|..++...|.+.. +.+++ -=-+.||.++.+ .+.++++++.+....... +.|-+ -|.+.
T Consensus 194 STsGi~~~I~~l~~~~~~v--~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~ 270 (349)
T COG0820 194 STSGIVPRIRKLADEQLGV--ALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSL 270 (349)
T ss_pred ecCCCchhHHHHHhhcCCe--EEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCH
Confidence 3344444555544 33432 345789998642 345788888888776555 44432 13334
Q ss_pred H---HHHHHhcCCCcceeecccCccccch-h-------hhHHHHHHHhCCceeeccccc
Q 024086 93 D---TIRRAHAVHPITAVQMEWSLLTRDI-E-------EEIIPLCRELGIGIVPYSPLG 140 (272)
Q Consensus 93 ~---~l~~~~~~~~~~~~q~~~n~~~~~~-~-------~~~~~~~~~~gv~vi~~~~la 140 (272)
+ .+.+++...+-.++.++||+..-.. . ....+...++|+.+.....-+
T Consensus 271 e~A~~L~~ll~~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g 329 (349)
T COG0820 271 EHAKELAKLLKGIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRG 329 (349)
T ss_pred HHHHHHHHHhcCCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHHhCCeeEEeccccc
Confidence 4 4555555556689999999976432 1 345556666778777765554
No 119
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=35.92 E-value=55 Score=27.16 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=32.1
Q ss_pred ceeecCC-CCHHHHHHHhcCCCcceeecccCccccchhhhHHHHHHHhCCceee
Q 024086 83 KYIGLSE-ASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVP 135 (272)
Q Consensus 83 r~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~ 135 (272)
-.||..+ .+.++++.+++..- +++ +.+....+++++|+++|+.++.
T Consensus 60 ~~vGAGTV~~~e~a~~a~~aGA-~Fi------vSP~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 60 LLVGAGTVLTAEQAEAAIAAGA-QFI------VSPGFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp SEEEEES--SHHHHHHHHHHT--SEE------EESS--HHHHHHHHHHTSEEEE
T ss_pred CeeEEEeccCHHHHHHHHHcCC-CEE------ECCCCCHHHHHHHHHcCCcccC
Confidence 4689877 58899999888642 222 2234457999999999999887
No 120
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.57 E-value=3.3e+02 Score=24.50 Aligned_cols=105 Identities=23% Similarity=0.246 Sum_probs=59.7
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCcccEEEecc---------CCCCCCHHHHHHHHHHHHHcCccceeecCC-CCHHHHHHH
Q 024086 29 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHR---------VDPSVPIEDTIGELKMLVVEGKIKYIGLSE-ASPDTIRRA 98 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~---------~~~~~~~~e~~~al~~l~~~G~ir~iGvS~-~~~~~l~~~ 98 (272)
..++.+.+.+- -+.|.+.|+++|.+-+.-. +.. .+-.+.++.+.+..+.-++..+-+.. .+.+.++.+
T Consensus 19 ~~f~~~~~~~i-a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~-~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVRAI-AAALDEAGVDAIEVTHGDGLGGSSFNYGFSA-HTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHHHH-HHHHHHcCCCEEEEecCCCCCCccccCCCCC-CChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 36677766554 4558999999999863211 111 12223333333333333333232222 256667776
Q ss_pred hcCCCcceeecccCccccchhhhHHHHHHHhCCceeec
Q 024086 99 HAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 99 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~ 136 (272)
.+. .++.+.+..+.-+-+...+.++++++.|+.+...
T Consensus 97 ~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~ 133 (333)
T TIGR03217 97 YDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVGF 133 (333)
T ss_pred HHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEE
Confidence 664 4577777665544434478899999999876543
No 121
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.36 E-value=3.5e+02 Score=24.62 Aligned_cols=136 Identities=14% Similarity=0.161 Sum_probs=82.0
Q ss_pred CCCcEEEEecccccCCC----Ccc--cccCCCHHHHHHHHHHHHhhhCCCc-ccEEEeccCCCCCCHHHHHHHHHHHHH-
Q 024086 7 PRKKIQLASKFGVVSMA----PTS--VIVKGTPEYVRSCCEASLKRLGVDY-IDLYYQHRVDPSVPIEDTIGELKMLVV- 78 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~----~~~--~~~~~s~~~i~~~le~SL~~L~~d~-iDl~~lH~~~~~~~~~e~~~al~~l~~- 78 (272)
.|..++|||=+|..-.+ .+. ...+.+++.|..++......++.+. =-+.++-.=.+..+.+.+.++++.+++
T Consensus 97 ~~~t~cvSsq~GC~l~C~FC~t~~~G~~rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~N~d~v~~~l~~l~~~ 176 (348)
T PRK14467 97 DHLTLCVSSQVGCAVGCKFCATAKDGLIRNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLANYENVRKAVQIMTSP 176 (348)
T ss_pred CCcEEEEEcCCCCCCcCcCCCCCCCCCcCCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhcCHHHHHHHHHHHcCh
Confidence 57889999999875443 222 2358899999999987766654222 234444434556677899999999986
Q ss_pred cCc---cceeecCCCC-HHHHHHHhcC---CCcceeecccCccccchh------------hhHHHHHH----HhCCceee
Q 024086 79 EGK---IKYIGLSEAS-PDTIRRAHAV---HPITAVQMEWSLLTRDIE------------EEIIPLCR----ELGIGIVP 135 (272)
Q Consensus 79 ~G~---ir~iGvS~~~-~~~l~~~~~~---~~~~~~q~~~n~~~~~~~------------~~~~~~~~----~~gv~vi~ 135 (272)
.|. -|++-||+-. ...+.++... ..++.. +..+..++... .++++.++ +.|..+..
T Consensus 177 ~gl~~~~r~itvsT~G~~~~i~~l~~~~~l~~v~La-lSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~~V~i 255 (348)
T PRK14467 177 WGLDLSKRRITISTSGIIHQIKRMAEDPVMPEVNLA-VSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGRRIML 255 (348)
T ss_pred hccCcCCCcEEEECCCChhHHHHHHhhccccCeeEE-EECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCCeEEE
Confidence 675 3577777654 2334443322 233333 44444333211 33555554 56777776
Q ss_pred cccccccc
Q 024086 136 YSPLGRGL 143 (272)
Q Consensus 136 ~~~la~G~ 143 (272)
.-+|-.|.
T Consensus 256 eyvLIpGv 263 (348)
T PRK14467 256 EYVLIKGV 263 (348)
T ss_pred EEEEECCc
Confidence 66776664
No 122
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=35.17 E-value=2.1e+02 Score=23.44 Aligned_cols=67 Identities=22% Similarity=0.377 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCccceeecCCCCH--HHHHHHhcCCCcceeecccCcccc--------chhhhHHHHHHHhCCceeec
Q 024086 67 EDTIGELKMLVVEGKIKYIGLSEASP--DTIRRAHAVHPITAVQMEWSLLTR--------DIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 67 ~e~~~al~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~~n~~~~--------~~~~~~~~~~~~~gv~vi~~ 136 (272)
..+.+.++.|++.|- .+.+.+++. ..+..+. ..+++.+=+..+++.. ..-+.+...|+..|+.+++-
T Consensus 133 ~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~-~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 133 ESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK-RLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred HHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH-hCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 345689999999997 666666543 2333333 3345666554433321 22356789999999998885
No 123
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=35.17 E-value=1.3e+02 Score=27.15 Aligned_cols=67 Identities=10% Similarity=0.014 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCcc-ceeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeec
Q 024086 70 IGELKMLVVEGKI-KYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 70 ~~al~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~ 136 (272)
++.+.++++..-| -+.|=|.++...+..+++...++++|+..+..-- ....++...|+.+|+.++.+
T Consensus 226 ~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia~~A~~~gi~~~~h 294 (355)
T cd03321 226 YEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRASALAEQAGIPMSSH 294 (355)
T ss_pred HHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHHHHHHHcCCeeccc
Confidence 4555566655332 2345566788888888887778888887665421 11257899999999988644
No 124
>COG0218 Predicted GTPase [General function prediction only]
Probab=35.05 E-value=1.6e+02 Score=24.60 Aligned_cols=67 Identities=12% Similarity=-0.045 Sum_probs=46.7
Q ss_pred ccccCCCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccE--EEeccCCCCCCHHHHHHHHHHHHHc
Q 024086 2 VLKQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDL--YYQHRVDPSVPIEDTIGELKMLVVE 79 (272)
Q Consensus 2 aL~~~~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl--~~lH~~~~~~~~~e~~~al~~l~~~ 79 (272)
||.+....=++|.||.--. ......+.+....+.|+.+..|- +.+.+......+++++.++.+....
T Consensus 130 ~l~~~~i~~~vv~tK~DKi-----------~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 130 FLLELGIPVIVVLTKADKL-----------KKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHcCCCeEEEEEccccC-----------ChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 3444455567888997633 55667788888898898777765 5555555556688888888776543
No 125
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=34.38 E-value=4.2e+02 Score=25.26 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=66.5
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHH----cCccceeecC--CCCHHHHHHHhcCC
Q 024086 29 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVV----EGKIKYIGLS--EASPDTIRRAHAVH 102 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~----~G~ir~iGvS--~~~~~~l~~~~~~~ 102 (272)
+.++.+.|.+.++. +...|...+-|+.=..| +..+++-+.+.++.+++ .|.++.++++ ..+.+.+.++-+.+
T Consensus 113 ~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 113 KKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred eECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 35689999999986 47788777655422222 33456767777777765 5777777775 35677777776643
Q ss_pred --CcceeecccCc-----ccc-----chh--hhHHHHHHHhCCceeeccccc
Q 024086 103 --PITAVQMEWSL-----LTR-----DIE--EEIIPLCRELGIGIVPYSPLG 140 (272)
Q Consensus 103 --~~~~~q~~~n~-----~~~-----~~~--~~~~~~~~~~gv~vi~~~~la 140 (272)
.+-..|=.||. +++ ++. -+.++.+++.|+.-++.+.|-
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~ 242 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLF 242 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEE
Confidence 23334444431 111 111 357888888888755554443
No 126
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.19 E-value=2.7e+02 Score=25.26 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=54.8
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHc-Cc---cceeecCC--CCH---HHHHHHhcCCCcceeecccCc
Q 024086 54 LYYQHRVDPS-----------VPIEDTIGELKMLVVE-GK---IKYIGLSE--ASP---DTIRRAHAVHPITAVQMEWSL 113 (272)
Q Consensus 54 l~~lH~~~~~-----------~~~~e~~~al~~l~~~-G~---ir~iGvS~--~~~---~~l~~~~~~~~~~~~q~~~n~ 113 (272)
.+.||.++.+ .+++++++++.++.++ |+ ++++=+.+ .+. +.+.+++...+..++.++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 5789988642 3457889998877644 22 22443332 344 445555555567888999997
Q ss_pred cccc---hh----hhHHHHHHHhCCceeecccccc
Q 024086 114 LTRD---IE----EEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 114 ~~~~---~~----~~~~~~~~~~gv~vi~~~~la~ 141 (272)
-... +. ....+..+.+|+.+..+...+.
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~ 329 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGK 329 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 4321 11 3466667778999988876654
No 127
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=33.79 E-value=3.6e+02 Score=24.33 Aligned_cols=104 Identities=24% Similarity=0.266 Sum_probs=60.3
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCcccEEEeccC-------C-CCCCHHHHHHHHHHHHHcCccceeecC---CCCHHHHHH
Q 024086 29 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRV-------D-PSVPIEDTIGELKMLVVEGKIKYIGLS---EASPDTIRR 97 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~-------~-~~~~~~e~~~al~~l~~~G~ir~iGvS---~~~~~~l~~ 97 (272)
..++.+.+.+-++ .|.+.|+++|.+-+.-.. + ...+-.+.++++.+.. ...+...+. ..+.+.++.
T Consensus 20 ~~f~~~~~~~i~~-~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 20 HQYTLEQVRAIAR-ALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CccCHHHHHHHHH-HHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHHH
Confidence 3667777666555 499999999998643211 1 1122234444443332 234444322 224566766
Q ss_pred HhcCCCcceeecccCccccchhhhHHHHHHHhCCceeec
Q 024086 98 AHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 98 ~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~ 136 (272)
+.+. .++.+.+.++.-+.+...+.+++++++|+.+.+.
T Consensus 97 a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 6654 4567666655544444478899999999877664
No 128
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=33.79 E-value=1.3e+02 Score=27.46 Aligned_cols=90 Identities=11% Similarity=0.006 Sum_probs=47.3
Q ss_pred HHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceeecccCccccchhhhHHHHHHHhCCceeecccccccccCCCC
Q 024086 69 TIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKA 148 (272)
Q Consensus 69 ~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~ 148 (272)
-.+++.+|.+.|.+.+|-.-.-. +.-..+....+..--.--|.....+..+.+++.|+++||.||.-+.=..+
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~La-E~tma~~~~~~~~~p~~gY~~~~~~~L~~~L~~~~~~gIkvI~NaGg~np------ 83 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLA-ERTMAILARAKRKDPTKGYAPDFVRDLRPLLPAAAEKGIKVITNAGGLNP------ 83 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHH-HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhCCCCEEEeCCCCCH------
Confidence 35566666677777777552211 11111111000000011233222223378999999999999986321111
Q ss_pred cCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCC
Q 024086 149 VVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCT 190 (272)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s 190 (272)
....+.+++++++.|++
T Consensus 84 -------------------------~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 84 -------------------------AGCADIVREIARELGLS 100 (362)
T ss_pred -------------------------HHHHHHHHHHHHhcCCC
Confidence 22556888999998876
No 129
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=33.42 E-value=64 Score=28.17 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCH----HHHHHHHHHHHHcCccceeecCCC-CHHHH-HHHhcCCC
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPI----EDTIGELKMLVVEGKIKYIGLSEA-SPDTI-RRAHAVHP 103 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~----~e~~~al~~l~~~G~ir~iGvS~~-~~~~l-~~~~~~~~ 103 (272)
+.+.+.+.+-+.+++++++...++++.+...+..... -+-.+.++++.++|+ ..|-++.| ..+.+ ...+....
T Consensus 66 ~~~~~e~~~l~~~~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~g~e~l~~a~~~g~-gvIl~t~H~GnwE~~~~~l~~~~ 144 (295)
T PF03279_consen 66 EKSEAERKKLIRESFRNFGRTLAEFFKLPKMSKEQLKKRVEIEGEEHLEAALAEGR-GVILLTGHFGNWELAGRALARRG 144 (295)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhcceEEEEECHHHHHHHHhcCC-CCEEeCcCcChHHHHHHHHHhhC
Confidence 5578888888999999999988888777765432111 133677777788887 45556655 44443 34443322
Q ss_pred cceeecccCccccchhhhHHHHHHHhCCceeeccc
Q 024086 104 ITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 138 (272)
Q Consensus 104 ~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~ 138 (272)
..+..+.-+.-++..++-+.+...+.|+.++....
T Consensus 145 ~~~~~i~~~~~n~~~~~~~~~~R~~~g~~~i~~~~ 179 (295)
T PF03279_consen 145 PPVAVIYRPQKNPYIDRLLNKLRERFGIELIPKGE 179 (295)
T ss_pred CceEEEecCCccHhHHHHHHHHHHhcCCeEecchh
Confidence 22322222222333334445555566777766544
No 130
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=33.32 E-value=2.6e+02 Score=24.86 Aligned_cols=108 Identities=12% Similarity=0.111 Sum_probs=65.7
Q ss_pred CccceeecCCCCHHHHHHHhcCC--Cc-ceeecccCccc---cchhhhHHHHHHHhCCceeecccccccccCCCCcCCCC
Q 024086 80 GKIKYIGLSEASPDTIRRAHAVH--PI-TAVQMEWSLLT---RDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESL 153 (272)
Q Consensus 80 G~ir~iGvS~~~~~~l~~~~~~~--~~-~~~q~~~n~~~---~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~ 153 (272)
.++-.+.-++++.+.+.++++.. .+ ...-..+|-.- .+-+..+.+.+++.++-++.- |.=+ .
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVVG-----g~~S-------s 223 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVVG-----SKNS-------S 223 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEEC-----CCCC-------c
Confidence 56666666778887766665531 11 11111122111 112356888888877766652 2100 0
Q ss_pred CCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCC------CHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhH
Q 024086 154 PANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENI 222 (272)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl 222 (272)
+ -..|.++|++.|. ++.++-..|..... ...+..|+|+|+.+-+.+
T Consensus 224 N----------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 224 N----------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred c----------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 0 1278888988874 57899889986543 478899999999876655
No 131
>PRK00077 eno enolase; Provisional
Probab=33.20 E-value=4.1e+02 Score=24.82 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ccceeecC--CCCHHHHHHHhcCCCcce
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG--KIKYIGLS--EASPDTIRRAHAVHPITA 106 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~ 106 (272)
.+++.....+.+.++. .++.+|-.|-+.. -++.+.+|.++- ++.-.|=- ..+++.+..+++....++
T Consensus 261 ~s~~e~~~~~~~l~e~-----y~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDK-----YPIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhh-----CCcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 3555555555555544 4677888775433 366666676653 45443332 246899999999888899
Q ss_pred eecccCcccc-chhhhHHHHHHHhCCceee
Q 024086 107 VQMEWSLLTR-DIEEEIIPLCRELGIGIVP 135 (272)
Q Consensus 107 ~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~ 135 (272)
+|+..|-.-- ....++...|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 9997775432 1126789999999998665
No 132
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=32.76 E-value=2.3e+02 Score=23.67 Aligned_cols=98 Identities=21% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhc---CCCcce
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHA---VHPITA 106 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~~ 106 (272)
.++.+...+-+ +.|.++|+++|.+- .+.......+.++.+.+.....+ ..++.......++..++ ...++.
T Consensus 10 ~~~~~~k~~i~-~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 10 AFSTEEKLEIA-KALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPNAR--LQALCRANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp T--HHHHHHHH-HHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHSSE--EEEEEESCHHHHHHHHHHHHHTTSSE
T ss_pred CcCHHHHHHHH-HHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcccc--cceeeeehHHHHHHHHHhhHhccCCE
Confidence 34555555544 45999999999988 22221122344555555555533 34445455555555443 345555
Q ss_pred eecccCccc--------------cchhhhHHHHHHHhCCce
Q 024086 107 VQMEWSLLT--------------RDIEEEIIPLCRELGIGI 133 (272)
Q Consensus 107 ~q~~~n~~~--------------~~~~~~~~~~~~~~gv~v 133 (272)
+.+..+.-+ ...-.+.+.+++++|..+
T Consensus 84 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 84 IRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 555444332 111256899999999888
No 133
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=32.35 E-value=4.4e+02 Score=24.96 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHH----HhhhC-CCcccEEEeccCCCCCCHHHHHHHHHHHHHc-CccceeecCCCCHHHHHHHhcCCC
Q 024086 30 KGTPEYVRSCCEAS----LKRLG-VDYIDLYYQHRVDPSVPIEDTIGELKMLVVE-GKIKYIGLSEASPDTIRRAHAVHP 103 (272)
Q Consensus 30 ~~s~~~i~~~le~S----L~~L~-~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 103 (272)
..+.+.+.+.++.- ..+.| .=..|++-|+.... ..+.+..+++.+++. +. -+.+.+++++.++++++...
T Consensus 101 ~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--dp~~v~~~Vk~V~~~~dv--PLSIDT~dpevleaAleaga 176 (450)
T PRK04165 101 TMDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--DPEKFAKAVKKVAETTDL--PLILCSEDPAVLKAALEVVA 176 (450)
T ss_pred CCChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--CHHHHHHHHHHHHHhcCC--CEEEeCCCHHHHHHHHHhcC
Confidence 45667777776655 12333 22367777887654 344566666666653 44 47788899999999987642
Q ss_pred cceeecccCccccchhhhHHHHHHHhCCceeeccc
Q 024086 104 ITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSP 138 (272)
Q Consensus 104 ~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~ 138 (272)
+.+-.-+++-..+. .++.+.|.++|..++...+
T Consensus 177 -d~~plI~Sat~dN~-~~m~~la~~yg~pvVv~~~ 209 (450)
T PRK04165 177 -DRKPLLYAATKENY-EEMAELAKEYNCPLVVKAP 209 (450)
T ss_pred -CCCceEEecCcchH-HHHHHHHHHcCCcEEEEch
Confidence 11111112211121 5678888888888887654
No 134
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=32.27 E-value=1.9e+02 Score=22.25 Aligned_cols=49 Identities=31% Similarity=0.412 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhhhC--CCcccEEEeccCCCCCCH-HHHHHHHHHHHHcC
Q 024086 32 TPEYVRSCCEASLKRLG--VDYIDLYYQHRVDPSVPI-EDTIGELKMLVVEG 80 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~--~d~iDl~~lH~~~~~~~~-~e~~~al~~l~~~G 80 (272)
-...+.+..+...++|+ .+.+.+.+.-..++..++ ..+-++++++.++|
T Consensus 39 Y~~~~~~~~~~v~~~l~~~~~~~~~~fqS~~g~~~Wl~P~~~~~l~~l~~~G 90 (135)
T cd00419 39 YPDQCEETARLVAERLGLPFDEYELAYQSRFGPGEWLEPSTDDALEELAKEG 90 (135)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEecCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 46788888888889998 444556666544443333 24788889999988
No 135
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=32.10 E-value=3.7e+02 Score=24.43 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=55.0
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcC-c---cceeecC--CCCHH---HHHHHhcCCCcceeecccCc
Q 024086 54 LYYQHRVDPS-----------VPIEDTIGELKMLVVEG-K---IKYIGLS--EASPD---TIRRAHAVHPITAVQMEWSL 113 (272)
Q Consensus 54 l~~lH~~~~~-----------~~~~e~~~al~~l~~~G-~---ir~iGvS--~~~~~---~l~~~~~~~~~~~~q~~~n~ 113 (272)
.+.||.++.+ .+++++++++.+..++. . +-|+=+. |.+.+ .+.+++...+..++.++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 6889988532 34688899998865443 1 2223222 44444 44555555567888999997
Q ss_pred cccc----hh----hhHHHHHHHhCCceeecccccc
Q 024086 114 LTRD----IE----EEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 114 ~~~~----~~----~~~~~~~~~~gv~vi~~~~la~ 141 (272)
.... +. .+..+..+++|+.+..+...+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~ 325 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGE 325 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 4321 11 3566777888999888876654
No 136
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=32.09 E-value=2.4e+02 Score=25.16 Aligned_cols=90 Identities=11% Similarity=0.014 Sum_probs=57.9
Q ss_pred cEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHH---HHHHHHHHHHcCccceee
Q 024086 10 KIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIED---TIGELKMLVVEGKIKYIG 86 (272)
Q Consensus 10 ~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e---~~~al~~l~~~G~ir~iG 86 (272)
++-|+.|+...+. +.+. ...+-+.++..| +|.+.+|.-.....+.. -|+...++++.-.|--||
T Consensus 133 ~~pVsvKiR~g~~---------~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~ 199 (312)
T PRK10550 133 HLPVTVKVRLGWD---------SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIA 199 (312)
T ss_pred CcceEEEEECCCC---------CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEE
Confidence 4667888654321 1122 245666677777 57778886433222211 267788888877788888
Q ss_pred cCC-CCHHHHHHHhcCCCcceeecccC
Q 024086 87 LSE-ASPDTIRRAHAVHPITAVQMEWS 112 (272)
Q Consensus 87 vS~-~~~~~l~~~~~~~~~~~~q~~~n 112 (272)
... .+++.+.++++....|.+|+.=-
T Consensus 200 nGdI~t~~da~~~l~~~g~DgVmiGRg 226 (312)
T PRK10550 200 NGEIWDWQSAQQCMAITGCDAVMIGRG 226 (312)
T ss_pred eCCcCCHHHHHHHHhccCCCEEEEcHH
Confidence 877 48888888888888888888443
No 137
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=31.81 E-value=52 Score=27.10 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=41.4
Q ss_pred HHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCC-CCHHHHHHHhcCCCcceeecccCc
Q 024086 43 SLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQMEWSL 113 (272)
Q Consensus 43 SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~ 113 (272)
.+..+|.||+=+.+. +.....+ ..+...++.+.-.-+.+||.. .+.+.+.+.+....++++|+.-+.
T Consensus 14 ~~~~~g~d~~Gfi~~--~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIFY--PKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeecC--CCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 456789999888643 4322211 233344444444444889864 578889999999999999986665
No 138
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.70 E-value=3.9e+02 Score=24.16 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=62.9
Q ss_pred CCCcEEEEecccccCCCC----c--ccccCCCHHHHHHHHHHHHhhhCC--CcccEEEecc-CCCCCCHHHHHHHHHHHH
Q 024086 7 PRKKIQLASKFGVVSMAP----T--SVIVKGTPEYVRSCCEASLKRLGV--DYIDLYYQHR-VDPSVPIEDTIGELKMLV 77 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~----~--~~~~~~s~~~i~~~le~SL~~L~~--d~iDl~~lH~-~~~~~~~~e~~~al~~l~ 77 (272)
.|..+.|||=+|..-.+. + +....++++.|..++......+|+ ..++-+.+-. =++..+.+.+++++..+.
T Consensus 91 ~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~ 170 (343)
T PRK14468 91 DRKTICVSTMVGCPAGCAFCATGAMGFGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIML 170 (343)
T ss_pred CCCEEEEEecCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhc
Confidence 578899999887654431 1 234578999999999877666654 2456555555 355566788999999884
Q ss_pred -HcCc---cceeecCCCC-HHHHHHHhc
Q 024086 78 -VEGK---IKYIGLSEAS-PDTIRRAHA 100 (272)
Q Consensus 78 -~~G~---ir~iGvS~~~-~~~l~~~~~ 100 (272)
..|. .+.|.+|+.. ...+.++.+
T Consensus 171 ~~~g~~l~~r~itvST~G~~~~i~~L~~ 198 (343)
T PRK14468 171 HPQALAMSPRRVTLSTVGIPKGIRRLAE 198 (343)
T ss_pred ccccccccCceEEEECCCChHHHHHHHH
Confidence 4453 2578888764 455566654
No 139
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=31.57 E-value=3e+02 Score=25.91 Aligned_cols=70 Identities=7% Similarity=0.026 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCcceeecccCccccchhhhHHHHHHHhCCceeecccc
Q 024086 70 IGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 70 ~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~l 139 (272)
++.+.++++...|- ..|-|.++...+..+++...++++|......--....++.+.|+.+|+.+..++..
T Consensus 268 ~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~v~~h~~~ 338 (441)
T TIGR03247 268 REVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLTWGSHSNN 338 (441)
T ss_pred HHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCEEEEeCCc
Confidence 44555665544332 23556677888888888888888887653211111368999999999988876543
No 140
>COG2055 Malate/L-lactate dehydrogenases [Energy production and conversion]
Probab=31.52 E-value=2.4e+02 Score=25.75 Aligned_cols=89 Identities=17% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcC--------
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV-------- 101 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-------- 101 (272)
..+.+.++.-+++.|.+.|++.-| ...+.+.|-..- .-|+.+|...++...++.
T Consensus 5 ~~~~e~L~~~~~~vl~~~G~~ee~------------A~~vA~~lv~ad------~~G~~SHGv~r~p~yi~~l~~G~i~~ 66 (349)
T COG2055 5 KVSAEELKALIEEVLRKAGVPEED------------ARAVADVLVAAD------LRGVDSHGVGRLPGYVRRLKAGKINP 66 (349)
T ss_pred EecHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHH------hcCCcccchHHHHHHHHHHHcCCcCC
Confidence 458899999999999999975311 223333333332 457888888887766553
Q ss_pred -CCcceee-------cccC--ccc---cchhhhHHHHHHHhCCceeec
Q 024086 102 -HPITAVQ-------MEWS--LLT---RDIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 102 -~~~~~~q-------~~~n--~~~---~~~~~~~~~~~~~~gv~vi~~ 136 (272)
..+.+++ +.=+ +-+ ...-+..++.|+++||++++-
T Consensus 67 ~a~~~i~~~~~a~~~iDa~~g~G~~a~~~am~~aie~Ak~~Gia~vav 114 (349)
T COG2055 67 DAEPEIVREAPAVAVLDADGGFGQVAAKKAMELAIEKAKQHGIAAVAV 114 (349)
T ss_pred CCceEEEeecCcEEEEeCCCCcchHHHHHHHHHHHHHHHHhCeeEEEE
Confidence 1122222 1111 100 011167899999999998764
No 141
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=31.45 E-value=2.3e+02 Score=21.35 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhhhCC---CcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 024086 30 KGTPEYVRSCCEASLKRLGV---DYIDLYYQHRVDPS-VPIEDTIGELKMLVVE 79 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~---d~iDl~~lH~~~~~-~~~~e~~~al~~l~~~ 79 (272)
...++.|.+.+.+.++.+.. ...|++++-.+... .+..++.+.|..+.++
T Consensus 61 AV~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 61 AVVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred hhhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 34678888888888887642 35799999998654 4567787777776654
No 142
>PLN00191 enolase
Probab=31.34 E-value=3.7e+02 Score=25.53 Aligned_cols=97 Identities=9% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceee-cC-CCCHHHHHHHhcCCCcceee
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIG-LS-EASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iG-vS-~~~~~~l~~~~~~~~~~~~q 108 (272)
.|++...+-+.+.+++ .++.+|-.|-.. +-|+.+.+|.++.++.-+| =+ ..+++.+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 4666666665555433 367778776433 3477788888888887666 23 36789999999988889999
Q ss_pred cccCcccc-chhhhHHHHHHHhCCceeec
Q 024086 109 MEWSLLTR-DIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 109 ~~~n~~~~-~~~~~~~~~~~~~gv~vi~~ 136 (272)
+..|-.-- ....++.+.|+.+|+.++..
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 98775432 12267899999999998764
No 143
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=31.18 E-value=3.4e+02 Score=23.23 Aligned_cols=97 Identities=19% Similarity=0.197 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-ccceeecCCCCHHHHHHHhcCCCcceee
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG-KIKYIGLSEASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q 108 (272)
.++.+...+-+ +.|.++|+++|.+-+ |. . -+.-++.++.+.+.+ .++..+....+.+.++.+.+. .++.+.
T Consensus 16 ~~~~~~k~~i~-~~L~~~Gv~~iE~g~---p~--~-~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~ 87 (259)
T cd07939 16 AFSREEKLAIA-RALDEAGVDEIEVGI---PA--M-GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVH 87 (259)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEec---CC--C-CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEE
Confidence 45666655544 459999999999853 21 1 123356666666643 366667766777888777765 335554
Q ss_pred cccCcccc--------c------hhhhHHHHHHHhCCcee
Q 024086 109 MEWSLLTR--------D------IEEEIIPLCRELGIGIV 134 (272)
Q Consensus 109 ~~~n~~~~--------~------~~~~~~~~~~~~gv~vi 134 (272)
+.++.-+. . .-.+.+++|+++|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 43322111 0 01467889999998654
No 144
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=30.99 E-value=31 Score=25.07 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhcc-------CCCCCHHHHHHHHhhCCC
Q 024086 174 KQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSL-------MMKLTKEDMKEILNFVPI 243 (272)
Q Consensus 174 ~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~-------~~~Lt~e~~~~l~~~~~~ 243 (272)
.+.++++..+++..|+.+.... -..+.+|. ....+|..+.+.|.+.+... +.+||+-+...|++.+.-
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~-~q~~~~~~-p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~ 81 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTV-VQKRRKPD-PKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALGV 81 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEE-EecCCCCC-cceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCC
Confidence 4567889999999888664422 12233343 58889999999999988654 347999999999998843
No 145
>PLN02428 lipoic acid synthase
Probab=30.92 E-value=4.1e+02 Score=24.22 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHc--Cccce----eecCCCCHHHHHHHhc---CCCcceeec-cc----------C-ccccchhhhHH
Q 024086 65 PIEDTIGELKMLVVE--GKIKY----IGLSEASPDTIRRAHA---VHPITAVQM-EW----------S-LLTRDIEEEII 123 (272)
Q Consensus 65 ~~~e~~~al~~l~~~--G~ir~----iGvS~~~~~~l~~~~~---~~~~~~~q~-~~----------n-~~~~~~~~~~~ 123 (272)
.+++.++.++.+++. |..-. +|+ ..+.+.+.+.+. ...++.+.+ +| + +..+...+.+-
T Consensus 229 sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~ 307 (349)
T PLN02428 229 GYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWR 307 (349)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHH
Confidence 467889999999988 76532 366 445555544443 355555544 33 1 11122225677
Q ss_pred HHHHHhCCceeecccccc
Q 024086 124 PLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 124 ~~~~~~gv~vi~~~~la~ 141 (272)
+++.+.|...++.+||.+
T Consensus 308 ~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 308 EYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHHcCCceEEecCccc
Confidence 788888888888888875
No 146
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=30.91 E-value=2.9e+02 Score=24.33 Aligned_cols=107 Identities=15% Similarity=0.138 Sum_probs=65.4
Q ss_pred CccceeecCCCCHHHHHHHhcC--CCcceeecccCccc---cchhhhHHHHHHHhCCceeecccccccccCCCCcCCCCC
Q 024086 80 GKIKYIGLSEASPDTIRRAHAV--HPITAVQMEWSLLT---RDIEEEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLP 154 (272)
Q Consensus 80 G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~---~~~~~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~ 154 (272)
.++..+.-++.+.+.+.++++. ..+.-+.+ +|-.. .+-+..+.+.+.+-++-++.-+.=.+ +
T Consensus 157 ~kv~~vsQTT~~~~~~~~iv~~l~~~~~~~~v-~~TIC~aT~~RQ~a~~~La~~vD~miVVGg~~Ss------------N 223 (281)
T PRK12360 157 DKACVVAQTTIIPELWEDILNVIKLKSKELVF-FNTICSATKKRQESAKELSKEVDVMIVIGGKHSS------------N 223 (281)
T ss_pred cCEEEEECCCCcHHHHHHHHHHHHHhCccccc-CCCcchhhhhHHHHHHHHHHhCCEEEEecCCCCc------------c
Confidence 5555666677777776666553 11111111 22211 12235688888888876665211110 0
Q ss_pred CCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCC------CHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhH
Q 024086 155 ANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENI 222 (272)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl 222 (272)
-..|.++|.+.|. ++.++-..|..... ...+..|+|+|+.+-+.+
T Consensus 224 ----------------------T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~-~VGitaGASTP~~li~eV 274 (281)
T PRK12360 224 ----------------------TQKLVKICEKNCPNTFHIETADELDLEMLKDYK-IIGITAGASTPDWIIEEV 274 (281)
T ss_pred ----------------------HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCC-EEEEEccCCCCHHHHHHH
Confidence 1268888888875 57888888987654 478899999999887665
No 147
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=30.79 E-value=2.8e+02 Score=23.77 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=31.1
Q ss_pred hhHHHHHHHhCCceeecccccccccCCCCcCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCC
Q 024086 120 EEIIPLCRELGIGIVPYSPLGRGLLGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC 189 (272)
Q Consensus 120 ~~~~~~~~~~gv~vi~~~~la~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~ 189 (272)
+..++.|+..|..++.... .....+. -.........+.+..+.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~--~~~~~~~-----------------~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLAG--YDVYYEE-----------------HDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred HHHHHHHHHhCCCEEEecC--cccccCc-----------------CCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5789999999998886521 1000000 0112234555677788888999887
No 148
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=30.76 E-value=78 Score=27.83 Aligned_cols=60 Identities=5% Similarity=0.080 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCH----H--HHHHHHHHHHHcCccceeecCCC
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPI----E--DTIGELKMLVVEGKIKYIGLSEA 90 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~----~--e~~~al~~l~~~G~ir~iGvS~~ 90 (272)
+.|++.+++-+.++.++++...++++.+...+.+... - +-.+.++++.++|+ ..|-++.|
T Consensus 51 e~s~~e~~~i~~~~~~~~~~~~~E~~~~~~~~~~~~~~~v~i~~~g~e~l~~a~~~gk-gvIllt~H 116 (298)
T PRK07920 51 DAPAAVLDALVRAAMRSYARYWREAFRLPSMSRERLAARVRVSIEGLEHLDAALAAGR-GVVLALPH 116 (298)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHhhhhhccCCHHHHHHHHhcCC-CeEEEecC
Confidence 5689999999999999999888887777654332110 1 23466788888877 46666665
No 149
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=30.70 E-value=2.5e+02 Score=25.00 Aligned_cols=86 Identities=9% Similarity=0.038 Sum_probs=57.9
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHhcCCCcceeecccCccccchhhhHHHHHHHhC
Q 024086 52 IDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELG 130 (272)
Q Consensus 52 iDl~~lH~~~~~~~~~e~~~al~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g 130 (272)
.++.+|-.|-+.. -++.+.+|++.-. =-+.|=|-++...+..+++....+++|+.....-- -.++.+.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 3566666553322 3555666655432 23556677888888888888778888887766432 246788999999
Q ss_pred Cceeecccccccc
Q 024086 131 IGIVPYSPLGRGL 143 (272)
Q Consensus 131 v~vi~~~~la~G~ 143 (272)
+.++..+.+.+|+
T Consensus 266 i~~~~~~~~es~i 278 (320)
T PRK02714 266 LDAVFSSVFETAI 278 (320)
T ss_pred CCEEEEechhhHH
Confidence 9999876665543
No 150
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=30.64 E-value=1.4e+02 Score=28.71 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=52.1
Q ss_pred CCCcEEEEecccccCCCCc-------c--cccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHH
Q 024086 7 PRKKIQLASKFGVVSMAPT-------S--VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLV 77 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~~-------~--~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~ 77 (272)
-+.++||++=+|.-....| . .....++..|+ +|+.+.|+|.+. .+++++++..++.+
T Consensus 155 L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~vEvd~~ri~-------kR~~~g~ld~~~-------~~ldea~~~~~ea~ 220 (546)
T PF01175_consen 155 LAGKLFLTAGLGGMGGAQPLAATMAGGVGLIVEVDPSRIE-------KRLEQGYLDEVT-------DDLDEALARAKEAR 220 (546)
T ss_dssp -TT-EEEEE--STTCCHHHHHHHHTT-EEEEEES-HHHHH-------HHHHTTSSSEEE-------SSHHHHHHHHHHHH
T ss_pred CcceEEEEecccccccchHHHHHhcCceEEEEEECHHHHH-------HHHhCCCeeEEc-------CCHHHHHHHHHHhh
Confidence 4567888887764433211 0 12244555554 566678888653 46899999999999
Q ss_pred HcCccceeecCCCCHHHHHHHhcC
Q 024086 78 VEGKIKYIGLSEASPDTIRRAHAV 101 (272)
Q Consensus 78 ~~G~ir~iGvS~~~~~~l~~~~~~ 101 (272)
++|+...||+-..-.+.++++++.
T Consensus 221 ~~~~~~SIg~~GN~ad~~~~l~~~ 244 (546)
T PF01175_consen 221 AKKEPLSIGLLGNAADLWEELVER 244 (546)
T ss_dssp HTT--EEEEEES-HHHHHHHHHHT
T ss_pred ccCCeeEEEEeccHHHHHHHHHHc
Confidence 999999999988888888888775
No 151
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=30.59 E-value=3.2e+02 Score=22.84 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=14.3
Q ss_pred hhHHHHHHHhCCceeecc
Q 024086 120 EEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 120 ~~~~~~~~~~gv~vi~~~ 137 (272)
..+++.|++.|+.+.+|.
T Consensus 195 ~~~v~~~~~~Gl~v~vwT 212 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYT 212 (237)
T ss_pred HHHHHHHHHCCCEEEEEe
Confidence 567888888888888884
No 152
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=30.38 E-value=2.4e+02 Score=25.47 Aligned_cols=38 Identities=21% Similarity=0.150 Sum_probs=21.0
Q ss_pred HHHHHHHcCccceeecCC-CCHHHHHHHhcCCCcceeec
Q 024086 72 ELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQM 109 (272)
Q Consensus 72 al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~ 109 (272)
...++++.=.+--++... .+++.++++++....|.+++
T Consensus 267 ~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 267 ATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred HHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 344555544455455444 35666666666666666655
No 153
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=30.21 E-value=4.2e+02 Score=24.00 Aligned_cols=135 Identities=17% Similarity=0.150 Sum_probs=82.7
Q ss_pred CCCcEEEEecccccCCC----Cc--ccccCCCHHHHHHHHHHHHhhhCCCcc-cEEEeccCCCCCCHHHHHHHHHHHHH-
Q 024086 7 PRKKIQLASKFGVVSMA----PT--SVIVKGTPEYVRSCCEASLKRLGVDYI-DLYYQHRVDPSVPIEDTIGELKMLVV- 78 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~----~~--~~~~~~s~~~i~~~le~SL~~L~~d~i-Dl~~lH~~~~~~~~~e~~~al~~l~~- 78 (272)
.|..++|||=+|..-.+ .+ +.....+++.|..+|......++. .+ -++++-.=.|....+.+.++++.+++
T Consensus 99 ~~~t~cvSsqvGC~~~C~FC~tg~~G~~rnlt~~EI~~qv~~~~~~~~~-~~~gvV~mggGEPLln~d~v~~~l~~l~~~ 177 (342)
T PRK14454 99 HGNSICVSTQVGCRMGCKFCASTIGGMVRNLTAGEMLDQILAAQNDIGE-RISNIVLMGSGEPLDNYENVMKFLKIVNSP 177 (342)
T ss_pred CCCEEEEEcCCCCCCcCCcCCCCCCCCcccCCHHHHHHHHHHHHHHhcC-CCCCEEEECCchhhcCHHHHHHHHHHHhcc
Confidence 57778899888865443 12 223468999999999988876652 23 44556555666677889999999997
Q ss_pred cCc---cceeecCC--CCHHHHHHHhcCCCcceeecccCccccchh------------hhHHHH----HHHhCCceeecc
Q 024086 79 EGK---IKYIGLSE--ASPDTIRRAHAVHPITAVQMEWSLLTRDIE------------EEIIPL----CRELGIGIVPYS 137 (272)
Q Consensus 79 ~G~---ir~iGvS~--~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~------------~~~~~~----~~~~gv~vi~~~ 137 (272)
.|. -|++-||+ +.+ .+.++.+......+.+..+..+.... .++++. ..+.+-.+.-.-
T Consensus 178 ~gi~~~~r~itvsTsG~~p-~i~~l~~~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~rv~iey 256 (342)
T PRK14454 178 YGLNIGQRHITLSTCGIVP-KIYELADENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNRRITFEY 256 (342)
T ss_pred cccCcCCCceEEECcCChh-HHHHHHhhcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCCEEEEEE
Confidence 576 34677766 333 35666554221223444444443211 234333 345566666666
Q ss_pred cccccc
Q 024086 138 PLGRGL 143 (272)
Q Consensus 138 ~la~G~ 143 (272)
||-.|+
T Consensus 257 ~LI~gv 262 (342)
T PRK14454 257 ALVKGV 262 (342)
T ss_pred EeECCC
Confidence 776664
No 154
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=30.16 E-value=2.7e+02 Score=24.50 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHhhh---CCCcccEEEeccCCC--CCCHH----HHHHHHHHHHHcCccce-ee---cCCCCHHHHHH
Q 024086 31 GTPEYVRSCCEASLKRL---GVDYIDLYYQHRVDP--SVPIE----DTIGELKMLVVEGKIKY-IG---LSEASPDTIRR 97 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L---~~d~iDl~~lH~~~~--~~~~~----e~~~al~~l~~~G~ir~-iG---vS~~~~~~l~~ 97 (272)
.+++.+.......++.+ |+.|+|+.+--.... ....+ .+++++++.+++--|+. +. ....+.+.+++
T Consensus 66 ~~~ed~~~~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~~~~~~~~~~~ 145 (325)
T cd01320 66 QTEEDFERLAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGLRHLSPESAQE 145 (325)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEecCCCCHHHHHH
Confidence 46777777766665544 788998764322111 12233 34667777766543432 22 22344455544
Q ss_pred HhcC----CCcceeecccC--c--cccchhhhHHHHHHHhCCceeeccc
Q 024086 98 AHAV----HPITAVQMEWS--L--LTRDIEEEIIPLCRELGIGIVPYSP 138 (272)
Q Consensus 98 ~~~~----~~~~~~q~~~n--~--~~~~~~~~~~~~~~~~gv~vi~~~~ 138 (272)
.++. ..-.++-+... - ........+++.|+++|+.+..+..
T Consensus 146 ~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~ 194 (325)
T cd01320 146 TLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAG 194 (325)
T ss_pred HHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCC
Confidence 4432 11112222221 1 1112236789999999999888743
No 155
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=30.02 E-value=2.7e+02 Score=25.22 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCC-CCHHH-HHHHHHHHHHcCccceeecCCCCHHHHH
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPS-VPIED-TIGELKMLVVEGKIKYIGLSEASPDTIR 96 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~-~~~~e-~~~al~~l~~~G~ir~iGvS~~~~~~l~ 96 (272)
+-+.|.++++.-+++=. .|+.+||+.... .+.++ -+.+|..|.+.= .--||+|.|+..-+.
T Consensus 158 ~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a 220 (347)
T COG2089 158 TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILA 220 (347)
T ss_pred cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhH
Confidence 56778888876655544 399999987433 44554 356666665552 557899999865433
No 156
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=29.80 E-value=3.4e+02 Score=26.40 Aligned_cols=51 Identities=20% Similarity=0.241 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEeccCC---CCCCHHHHHHHHHHHHHcCccceeec
Q 024086 34 EYVRSCCEASLKRLGVDYIDLYYQHRVD---PSVPIEDTIGELKMLVVEGKIKYIGL 87 (272)
Q Consensus 34 ~~i~~~le~SL~~L~~d~iDl~~lH~~~---~~~~~~e~~~al~~l~~~G~ir~iGv 87 (272)
+...+-|+..++...-.+.+ -|-.- ....+.++++.+.++++.|+||.+.+
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~---~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~ 413 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSE---KHKIVVGFSHESILAAADPLIELIASGKIKGVVV 413 (576)
T ss_pred hhHHHHHHHHHhccCCcccc---cceeEEeecHHHHHHHHHHHHHHHhcCCcceEEE
Confidence 67788899999999877777 22110 11224467778889999999999844
No 157
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=29.78 E-value=2.4e+02 Score=21.16 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHhhhCC--CcccEEEeccCCCC-CCHHHHHHHHHHHHH
Q 024086 31 GTPEYVRSCCEASLKRLGV--DYIDLYYQHRVDPS-VPIEDTIGELKMLVV 78 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~--d~iDl~~lH~~~~~-~~~~e~~~al~~l~~ 78 (272)
..++.|.+.+.++++.... .-.|++++..++.. .+..++.+.|..|.+
T Consensus 59 V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~ 109 (120)
T PRK04390 59 VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMA 109 (120)
T ss_pred hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHH
Confidence 4678888888888875542 34699999998644 345566555555544
No 158
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=29.78 E-value=3.6e+02 Score=23.68 Aligned_cols=71 Identities=17% Similarity=0.061 Sum_probs=51.9
Q ss_pred cCCCHHHHHHHHHHHHhhhCC-----C---------------------cccEEEeccCCCC---CCHHHHHHHHHHHHHc
Q 024086 29 VKGTPEYVRSCCEASLKRLGV-----D---------------------YIDLYYQHRVDPS---VPIEDTIGELKMLVVE 79 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~-----d---------------------~iDl~~lH~~~~~---~~~~e~~~al~~l~~~ 79 (272)
.......++..++.-|+||.+ + ..+++.|..|-.- .+.+-+=++..+++++
T Consensus 100 kGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~ 179 (300)
T COG4152 100 KGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEE 179 (300)
T ss_pred cCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhc
Confidence 356788999999999999986 1 2234444433211 2334466778899999
Q ss_pred CccceeecCCCCHHHHHHHhcC
Q 024086 80 GKIKYIGLSEASPDTIRRAHAV 101 (272)
Q Consensus 80 G~ir~iGvS~~~~~~l~~~~~~ 101 (272)
|. .|=+|+|..+.++++++.
T Consensus 180 Ga--tIifSsH~Me~vEeLCD~ 199 (300)
T COG4152 180 GA--TIIFSSHRMEHVEELCDR 199 (300)
T ss_pred CC--EEEEecchHHHHHHHhhh
Confidence 99 889999999999999884
No 159
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=29.62 E-value=2e+02 Score=26.01 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=50.9
Q ss_pred HHHHHHHHHHc--Ccc-ceeecCCCCHHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeecc
Q 024086 69 TIGELKMLVVE--GKI-KYIGLSEASPDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 69 ~~~al~~l~~~--G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~ 137 (272)
-++.+.+|+++ -.| -+.|=|.++...+..+++....|++|+.....-- ....++...|+.+|+.++.+.
T Consensus 221 d~~~~~~l~~~~~~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit~~~~ia~~A~a~gi~~~~h~ 293 (352)
T cd03328 221 DLAGLRLVRERGPAGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVTGFLQAAALAAAHHVDLSAHC 293 (352)
T ss_pred hHHHHHHHHhhCCCCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeccCc
Confidence 46777777776 222 2456677899999999998888999997765421 113689999999999998864
No 160
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.59 E-value=1.2e+02 Score=25.36 Aligned_cols=60 Identities=22% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCccc---eeecCC-CCHHHHHHHhcC-CCcceeecccCccccchhhhHHHHHHHhCCceee
Q 024086 68 DTIGELKMLVVEGKIK---YIGLSE-ASPDTIRRAHAV-HPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVP 135 (272)
Q Consensus 68 e~~~al~~l~~~G~ir---~iGvS~-~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~ 135 (272)
...+.+++++++-.-+ .||..+ .+.++++.+++. ..| ++.+....+++++|+++|+.++.
T Consensus 50 ~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F--------ivsP~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 50 FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF--------IVSPSFNRETAKICNLYQIPYLP 114 (213)
T ss_pred cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE--------EECCCCCHHHHHHHHHcCCCEEC
No 161
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=29.27 E-value=4.4e+02 Score=23.98 Aligned_cols=100 Identities=12% Similarity=0.012 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCC--C-CCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcce
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP--S-VPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITA 106 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~--~-~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~ 106 (272)
.++.+.- -.+-+.|.++|+++|++-..-+|.. . ...+++++.+.. ...++..++. .+...++.+++... +.
T Consensus 64 ~~s~e~K-i~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~-~~ 137 (347)
T PLN02746 64 IVPTSVK-VELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGA-KE 137 (347)
T ss_pred CCCHHHH-HHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCc-CE
Confidence 4555554 4455569999999999876555521 1 122345555543 2234444553 47788888887632 33
Q ss_pred eecccCc--c------ccchh------hhHHHHHHHhCCceee
Q 024086 107 VQMEWSL--L------TRDIE------EEIIPLCRELGIGIVP 135 (272)
Q Consensus 107 ~q~~~n~--~------~~~~~------~~~~~~~~~~gv~vi~ 135 (272)
+.+.++. . +...+ .+.+++++++|+.|.+
T Consensus 138 v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 138 VAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 3332111 1 11111 4689999999988853
No 162
>PTZ00081 enolase; Provisional
Probab=28.95 E-value=5e+02 Score=24.49 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ccceeec--CCCCHHHHHHHhcCCCcce
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG--KIKYIGL--SEASPDTIRRAHAVHPITA 106 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~ 106 (272)
.+++.+..-+.+.++.+ ++++|-.|-+. +-|+.+.+|.++- .+.-+|= +..+++.+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y-----~I~~IEDPl~~----~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKY-----PIVSIEDPFDQ----DDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCc----ccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 57777777777777765 46777766432 3466667776653 5544443 2467899999999988899
Q ss_pred eecccCcccc-chhhhHHHHHHHhCCceeec
Q 024086 107 VQMEWSLLTR-DIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 107 ~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~ 136 (272)
+|+..|-.-- ....++...|+.+|+.++..
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~iis 382 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMVS 382 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEEe
Confidence 9998875431 12267899999999988773
No 163
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=28.92 E-value=4.8e+02 Score=24.33 Aligned_cols=98 Identities=10% Similarity=0.082 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--ccceeec-CC-CCHHHHHHHhcCCCccee
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEG--KIKYIGL-SE-ASPDTIRRAHAVHPITAV 107 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G--~ir~iGv-S~-~~~~~l~~~~~~~~~~~~ 107 (272)
+++...+-+.+.++. .++.+|-.|-+. +-++.+.+|.++- .+.-.|= +. .+...+..+++....+++
T Consensus 263 s~~eai~~~~~lle~-----~~i~~iEdPl~~----~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v 333 (425)
T TIGR01060 263 TSEEMIEYYKELVEK-----YPIVSIEDGLSE----EDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSI 333 (425)
T ss_pred CHHHHHHHHHHHHhc-----CCcEEEEcCCCc----ccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEE
Confidence 444444444444433 467778776432 2366677776654 4443332 22 358999999998888999
Q ss_pred ecccCcccc-chhhhHHHHHHHhCCcee-eccc
Q 024086 108 QMEWSLLTR-DIEEEIIPLCRELGIGIV-PYSP 138 (272)
Q Consensus 108 q~~~n~~~~-~~~~~~~~~~~~~gv~vi-~~~~ 138 (272)
|+..|-.-- ....++...|+.+|+.++ .+..
T Consensus 334 ~ik~~~iGGItea~~ia~lA~~~Gi~~vv~h~s 366 (425)
T TIGR01060 334 LIKPNQIGTLTETLDAVELAKKAGYTAVISHRS 366 (425)
T ss_pred EecccccCCHHHHHHHHHHHHHcCCcEEEecCC
Confidence 997775431 112678999999999855 4443
No 164
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=28.63 E-value=1.1e+02 Score=24.55 Aligned_cols=64 Identities=23% Similarity=0.215 Sum_probs=37.7
Q ss_pred HHHHHHHHHhhhCCCc----ccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcC
Q 024086 36 VRSCCEASLKRLGVDY----IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV 101 (272)
Q Consensus 36 i~~~le~SL~~L~~d~----iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 101 (272)
.+..++..++.+|.+. ++.+. ..........++.++|+.|+++|. +-.-+||.+...+...++.
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~~L~~~g~-~~~i~Sn~~~~~~~~~l~~ 128 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLA-EAYLRLPPHPDVPAGLRALKERGY-RLAILSNGSPAMLKSLVKH 128 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHHhcCCCCCCHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHH
Confidence 3566777777777652 11111 111112334678899999999984 4445677776666665554
No 165
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=28.45 E-value=2.1e+02 Score=27.70 Aligned_cols=73 Identities=19% Similarity=0.110 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCccee---ecccCccccchhhhHHHHHHHhCCceeecccc
Q 024086 64 VPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAV---QMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 64 ~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~---q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~l 139 (272)
...+++.+.+.+.++..+|+.+|+-.+..-.+...++...+..+ |-.+++-.+ -..++..-..|.-+.+-.|+
T Consensus 410 id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g~~lv~i~Q~~~~l~~~---~k~~e~~~~~g~i~~~dnp~ 485 (546)
T COG4626 410 IDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAGIKVVGIPQGFKKLSGA---IKTIERKLAEGVLVHGDNPL 485 (546)
T ss_pred cCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCCCceeeccchhhhhCch---hHHHHHHHhcCcEEECCCcH
Confidence 34578999999999999999999999999988888887665544 333333222 34455555555555554444
No 166
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=27.92 E-value=98 Score=27.13 Aligned_cols=102 Identities=13% Similarity=0.063 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHH----HHHHHHHHHHHcCccceeecCCC-CHHHH-HHHhcCC--
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIE----DTIGELKMLVVEGKIKYIGLSEA-SPDTI-RRAHAVH-- 102 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~----e~~~al~~l~~~G~ir~iGvS~~-~~~~l-~~~~~~~-- 102 (272)
.|.+.+++-+.++.++++..-++.+.+...+.+.... +-.+.++++.++|+ ..|-+++| +.+++ ...+...
T Consensus 59 ~s~~e~~~l~~~~~~~~~~~~~E~~~~~~~~~~~~~~~v~i~g~e~l~~a~~~g~-gvI~~t~H~GnwE~~~~~l~~~~~ 137 (298)
T PRK08419 59 KSQEEKKRIIKKCYENFAFFGLDFIRNQNTTKEEILNKVTFINEENLLDALKKKR-PIIVTTAHYGYWELFSLALAAYYG 137 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhhcCcEEEECHHHHHHHHHcCC-CEEEEeeCccHHHHHHHHHHhcCC
Confidence 6889999999999999998888888776543321100 22466777777777 55667766 33333 3233322
Q ss_pred CcceeecccCccccchhhhHHHHHHHhCCceee
Q 024086 103 PITAVQMEWSLLTRDIEEEIIPLCRELGIGIVP 135 (272)
Q Consensus 103 ~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~ 135 (272)
++.++.= ..-++..++-+.....+.|+.++.
T Consensus 138 ~~~~v~~--~~~n~~~~~~~~~~R~~~g~~~i~ 168 (298)
T PRK08419 138 AVSIVGR--LLKSAPINEMISKRREQFGIELID 168 (298)
T ss_pred CeEEEEe--CCCChHHHHHHHHHHHHcCCeeEE
Confidence 2222211 122233333344555566777773
No 167
>PRK08084 DNA replication initiation factor; Provisional
Probab=27.67 E-value=1.8e+02 Score=24.57 Aligned_cols=45 Identities=7% Similarity=0.113 Sum_probs=32.7
Q ss_pred cccEEEeccCCCCC----CHHHHHHHHHHHHHcCccceeecCCCCHHHH
Q 024086 51 YIDLYYQHRVDPSV----PIEDTIGELKMLVVEGKIKYIGLSEASPDTI 95 (272)
Q Consensus 51 ~iDl~~lH~~~~~~----~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l 95 (272)
..|++.|...+.-. .-+++.+.+..+.+.|+++-|+.|+..+..+
T Consensus 97 ~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l 145 (235)
T PRK08084 97 QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL 145 (235)
T ss_pred hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc
Confidence 35888877664321 2245678899999999999999998776663
No 168
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.56 E-value=3.8e+02 Score=24.69 Aligned_cols=88 Identities=9% Similarity=0.130 Sum_probs=0.0
Q ss_pred EEEeccC-----------CCCCCHHHHHHHHHHHH-HcCc---cceeecCCCCHHH-----HHHHhcCC---Ccceeecc
Q 024086 54 LYYQHRV-----------DPSVPIEDTIGELKMLV-VEGK---IKYIGLSEASPDT-----IRRAHAVH---PITAVQME 110 (272)
Q Consensus 54 l~~lH~~-----------~~~~~~~e~~~al~~l~-~~G~---ir~iGvS~~~~~~-----l~~~~~~~---~~~~~q~~ 110 (272)
.+.||.+ +...+++++++++.++. +.|+ |.|+=+.+.+-.. +.+++... ...++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Q ss_pred cCccccchh--------hhHHHHHHHhCCceeecccccc
Q 024086 111 WSLLTRDIE--------EEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 111 ~n~~~~~~~--------~~~~~~~~~~gv~vi~~~~la~ 141 (272)
||....... ....+..+++|+.+..+...+.
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~ 359 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQ 359 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCc
No 169
>PRK07328 histidinol-phosphatase; Provisional
Probab=27.48 E-value=3.4e+02 Score=23.34 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHHHHHHHhhhCCCcccEEEeccCCCC-------------CCHHHHH----HHHHHHHHcCccceeec
Q 024086 37 RSCCEASLKRLGVDYIDLYYQHRVDPS-------------VPIEDTI----GELKMLVVEGKIKYIGL 87 (272)
Q Consensus 37 ~~~le~SL~~L~~d~iDl~~lH~~~~~-------------~~~~e~~----~al~~l~~~G~ir~iGv 87 (272)
...+++.|+.-..||+ |..+|..+.. ...++++ +.+.++.+.|.+.-+|=
T Consensus 94 ~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH 160 (269)
T PRK07328 94 EEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGH 160 (269)
T ss_pred HHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeC
Confidence 4445556667667877 8888986421 1122333 34666777777766654
No 170
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=27.36 E-value=3e+02 Score=21.64 Aligned_cols=19 Identities=11% Similarity=0.336 Sum_probs=16.0
Q ss_pred hhHHHHHHHhCCceeeccc
Q 024086 120 EEIIPLCRELGIGIVPYSP 138 (272)
Q Consensus 120 ~~~~~~~~~~gv~vi~~~~ 138 (272)
.++++.++++|+.+++|..
T Consensus 150 ~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred HHHHHHHHHcCCEEEEEcC
Confidence 5789999999999999853
No 171
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=27.29 E-value=3.2e+02 Score=22.30 Aligned_cols=33 Identities=3% Similarity=-0.122 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCC
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDP 62 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~ 62 (272)
.++-+.+...++.+++.+|.+++..+.+|....
T Consensus 126 ~~~~~~ll~p~~~~~~~~Gm~~~~~~~~~~~~~ 158 (184)
T PRK04930 126 RYPMSDILRPFELTAAMCRMHWLSPIIIYWARR 158 (184)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEcCcEEEecCCC
Confidence 468888999999999999999999999998754
No 172
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=27.09 E-value=3.1e+02 Score=24.48 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCccceeecCCCCHH----HHHHHhcC---CC
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSV-PIEDTIGELKMLVVEGKIKYIGLSEASPD----TIRRAHAV---HP 103 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~-~~~e~~~al~~l~~~G~ir~iGvS~~~~~----~l~~~~~~---~~ 103 (272)
+.+.+.+-++...+ ..++..+-+|.-.+.. +..-.-+.++.|++.|+.-+||+-...+. ...++++. ..
T Consensus 151 ~~~~L~~ll~~l~~---i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~G 227 (321)
T TIGR03822 151 SPRRLGDIMARLAA---IDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAG 227 (321)
T ss_pred CHHHHHHHHHHHHh---CCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcC
Confidence 34555555555433 3356666677421111 11111244445666775556776543222 22222221 22
Q ss_pred c-ceeecccC-ccccc--hhhhHHHHHHHhCCc
Q 024086 104 I-TAVQMEWS-LLTRD--IEEEIIPLCRELGIG 132 (272)
Q Consensus 104 ~-~~~q~~~n-~~~~~--~~~~~~~~~~~~gv~ 132 (272)
+ -.+|.... -.+.+ ...++.+++.+.|+.
T Consensus 228 i~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~ 260 (321)
T TIGR03822 228 IPMVSQSVLLRGVNDDPETLAALMRAFVECRIK 260 (321)
T ss_pred CEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCe
Confidence 2 22443221 11122 125677788887765
No 173
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=27.01 E-value=3.5e+02 Score=23.84 Aligned_cols=116 Identities=16% Similarity=0.214 Sum_probs=69.8
Q ss_pred HHHHHHHHcCccceeecCCCCHHHHHHHhcCC--Cc--ceeecccC-ccc--cchhhhHHHHHHHhCCceeecccccccc
Q 024086 71 GELKMLVVEGKIKYIGLSEASPDTIRRAHAVH--PI--TAVQMEWS-LLT--RDIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 71 ~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~--~~--~~~q~~~n-~~~--~~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
+-++.+....++..+.-++++.+.+.++++.- .+ .-+.+ +| +.+ ++-+..+.+.+.+-++-++. +|.
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~-~nTIC~AT~~RQ~a~~~la~~vD~miVV-----Gg~ 218 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPV-FNTICYATQNRQDAVKELAPEVDLMIVI-----GGK 218 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCC-CCCcccccHHHHHHHHHHHhhCCEEEEE-----CCC
Confidence 33444444456666666778877766665531 11 11111 12 111 12236688888887766665 221
Q ss_pred cCCCCcCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCC------CHHHHHHHHHHhCCCCeEeecCCCCHHH
Q 024086 144 LGGKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTKIKN 217 (272)
Q Consensus 144 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~------s~~~lal~~~l~~~~v~~vl~G~~~~~~ 217 (272)
=+ .+ ...|.++|++.|. ++.++-..|.-... ...+..|+|+|+.
T Consensus 219 nS-------sN----------------------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGiTAGASTP~~ 268 (280)
T TIGR00216 219 NS-------SN----------------------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVK-VVGITAGASTPDW 268 (280)
T ss_pred CC-------ch----------------------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCC-EEEEEecCCCCHH
Confidence 00 00 1378889998874 57888889987654 4789999999998
Q ss_pred HHHhH
Q 024086 218 LDENI 222 (272)
Q Consensus 218 l~~nl 222 (272)
+-+.+
T Consensus 269 li~eV 273 (280)
T TIGR00216 269 IIEEV 273 (280)
T ss_pred HHHHH
Confidence 87654
No 174
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=26.72 E-value=2.1e+02 Score=25.54 Aligned_cols=88 Identities=24% Similarity=0.267 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCcccee-----ecCCCCHHHHHHHhcCCCcc
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIE-DTIGELKMLVVEGKIKYI-----GLSEASPDTIRRAHAVHPIT 105 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~-e~~~al~~l~~~G~ir~i-----GvS~~~~~~l~~~~~~~~~~ 105 (272)
-.+.+.+..+...++||...+.+-+.-..++..++. .+-+.|++|.++| ++.| |+...+.+.
T Consensus 205 Y~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lET----------- 272 (316)
T PF00762_consen 205 YPAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLET----------- 272 (316)
T ss_dssp HHHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHH-----------
T ss_pred hHHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhH-----------
Confidence 467888889999999998776666665555544443 5889999999999 4444 443334333
Q ss_pred eeecccCccccchhhhHHHHHHHhCCceeeccccc
Q 024086 106 AVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLG 140 (272)
Q Consensus 106 ~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la 140 (272)
-|.+ +.+..+.+.++|+.-+.+-|.-
T Consensus 273 ----l~ei-----die~re~~~~~G~~~~~~ip~l 298 (316)
T PF00762_consen 273 ----LYEI-----DIEYRELAEEAGGEEFVRIPCL 298 (316)
T ss_dssp ----HCCC-----CCHHHHHHHHHTCCEEEE---S
T ss_pred ----HHHH-----HHHHHHHHHHcCCceEEEeCCC
Confidence 2222 2456788888898666665554
No 175
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.71 E-value=1.8e+02 Score=25.14 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhCCCcccEEEeccCCCCCCHHH-HHHHHHHHHHcCccceeec-------CCCCHHHHHHHhcCCCcceee
Q 024086 37 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIED-TIGELKMLVVEGKIKYIGL-------SEASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 37 ~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e-~~~al~~l~~~G~ir~iGv-------S~~~~~~l~~~~~~~~~~~~q 108 (272)
.+.++..|+-.| +|||++-+-|-.......+ +-+.++-+++-|---+.|= .....+...+.+....|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 467888888999 8999999998754432233 4444444555554434332 112223333334446777777
Q ss_pred cccCccccchh--hhHHHHHHHhCCceee
Q 024086 109 MEWSLLTRDIE--EEIIPLCRELGIGIVP 135 (272)
Q Consensus 109 ~~~n~~~~~~~--~~~~~~~~~~gv~vi~ 135 (272)
+.=..++-..+ ..++..++++|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 76655544322 4577777777766655
No 176
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=26.67 E-value=3.2e+02 Score=24.79 Aligned_cols=68 Identities=9% Similarity=0.010 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCccc-eeecCCCC-HHHHHHHhcCCCcceeecccCcccc-chhhhHHHHHHHhCCceeecc
Q 024086 70 IGELKMLVVEGKIK-YIGLSEAS-PDTIRRAHAVHPITAVQMEWSLLTR-DIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 70 ~~al~~l~~~G~ir-~iGvS~~~-~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gv~vi~~~ 137 (272)
++.+.+++++--|- ..|=+-++ ...+..+++...++++|+..+..-- ..-.++...|+.+|+.++.++
T Consensus 229 ~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 229 ISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGAMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 46666777664443 22334466 8888888888888999997776421 123689999999999997654
No 177
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=26.41 E-value=5.7e+02 Score=24.44 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccC---CCCCCH----HHHHHHHHHHHH-cCccc--eeecCCCCHHHHH---
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRV---DPSVPI----EDTIGELKMLVV-EGKIK--YIGLSEASPDTIR--- 96 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~---~~~~~~----~e~~~al~~l~~-~G~ir--~iGvS~~~~~~l~--- 96 (272)
.+|++...+.+.+.. .=|+ |++==... .+..++ ..+.+++.+..+ .|+-+ ++-++.-+.+++.
T Consensus 179 GLsp~~~A~~~y~~~-~GGv---D~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~~em~~ra 254 (475)
T CHL00040 179 GLSAKNYGRAVYECL-RGGL---DFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMYKRA 254 (475)
T ss_pred CCCHHHHHHHHHHHH-cCCC---cccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeeeccCCCCHHHHHHHH
Confidence 668888888776665 3344 43321111 011233 346777777654 46533 4455533445443
Q ss_pred -HHhcCCCcceeecccCccccchhhhHHHHHHHhCCceeecccccc
Q 024086 97 -RAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 97 -~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~ 141 (272)
.+.+ ....++++.++..--.....+.+.|+..++.++++..+.+
T Consensus 255 ~~a~e-~G~~~~mv~~~~~G~~al~~l~~~~~~~~l~IhaHrA~~g 299 (475)
T CHL00040 255 VFARE-LGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHA 299 (475)
T ss_pred HHHHH-cCCceEEEeccccccchHHHHHHHhhhcCceEEecccccc
Confidence 3333 3446777777775544456778888889999999988874
No 178
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=26.15 E-value=3.7e+02 Score=22.11 Aligned_cols=19 Identities=21% Similarity=0.429 Sum_probs=16.0
Q ss_pred hhHHHHHHHhCCceeeccc
Q 024086 120 EEIIPLCRELGIGIVPYSP 138 (272)
Q Consensus 120 ~~~~~~~~~~gv~vi~~~~ 138 (272)
.++++.++++|+.|.+|..
T Consensus 189 ~~~v~~~~~~g~~v~~wTv 207 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTV 207 (229)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 5789999999999999843
No 179
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.01 E-value=4.5e+02 Score=22.99 Aligned_cols=120 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeec---------------------CCCC
Q 024086 34 EYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGL---------------------SEAS 91 (272)
Q Consensus 34 ~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~-ir~iGv---------------------S~~~ 91 (272)
..+...+++.-..-+--.|-.+.+-+|+ .+.+.+.+..|.+.|- +-.+|+ .+++
T Consensus 2 ~r~~~~F~~l~~~~~~a~i~yit~GdP~----~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t 77 (265)
T COG0159 2 SRLDQKFAQLKAENRGALIPYVTAGDPD----LETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVT 77 (265)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCC----HHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCC
Q ss_pred HHHHHHHhcCCC------cceeecccCccccchhhhHHHHHHHhCC-ceeecccccccccCCCCcCCCCCCCcccccCCC
Q 024086 92 PDTIRRAHAVHP------ITAVQMEWSLLTRDIEEEIIPLCRELGI-GIVPYSPLGRGLLGGKAVVESLPANSFLISHPR 164 (272)
Q Consensus 92 ~~~l~~~~~~~~------~~~~q~~~n~~~~~~~~~~~~~~~~~gv-~vi~~~~la~G~L~~~~~~~~~~~~~~~~~~~~ 164 (272)
.+...+++.... +-+.+.-||+..+.-.+..++.|++.|+ |++. .++|.
T Consensus 78 ~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGliv---------------pDLP~--------- 133 (265)
T COG0159 78 LEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLV---------------PDLPP--------- 133 (265)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEe---------------CCCCh---------
Q ss_pred CCCCchhhhHHHHHHHHHHHHhcCCCH
Q 024086 165 FTGENLGKNKQIYARVENLAKRNKCTP 191 (272)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~la~~~~~s~ 191 (272)
+..+.+.+.|+++|+.+
T Consensus 134 ----------ee~~~~~~~~~~~gi~~ 150 (265)
T COG0159 134 ----------EESDELLKAAEKHGIDP 150 (265)
T ss_pred ----------HHHHHHHHHHHHcCCcE
No 180
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=25.93 E-value=1.4e+02 Score=25.94 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceeecccCc
Q 024086 34 EYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWSL 113 (272)
Q Consensus 34 ~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~ 113 (272)
+..+.-....|..+. .+++ -+|....-...+++-+.+++.+++.- .+-|.+
T Consensus 10 eTAe~v~~A~l~QF~--~~~~-~~~~~p~I~~~~~~~~il~~i~~~~~--------------------------iV~~Tl 60 (255)
T PF03618_consen 10 ETAETVARAALAQFP--DVEF-EIHRFPFIRTEEQLDEILEEIKEENA--------------------------IVFYTL 60 (255)
T ss_pred HHHHHHHHHHHHhCC--CCce-EEEECCCcCCHHHHHHHHHHHhccCC--------------------------EEEEeC
Confidence 334444455556663 2332 44444343455667777777665322 344556
Q ss_pred cccchhhhHHHHHHHhCCceee
Q 024086 114 LTRDIEEEIIPLCRELGIGIVP 135 (272)
Q Consensus 114 ~~~~~~~~~~~~~~~~gv~vi~ 135 (272)
.++...+.+.++|+++|+..+-
T Consensus 61 v~~~lr~~l~~~~~~~~i~~~D 82 (255)
T PF03618_consen 61 VDPELREYLEEFCREHGIPCVD 82 (255)
T ss_pred CCHHHHHHHHHHHHhcCCCEEe
Confidence 6665545566688888776554
No 181
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=25.90 E-value=1.4e+02 Score=24.48 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=24.3
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHH
Q 024086 52 IDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDT 94 (272)
Q Consensus 52 iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~ 94 (272)
+|.+|||..++ .+.+..+.+......++.+|++++....
T Consensus 74 ~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~ 112 (203)
T cd00405 74 LDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLE 112 (203)
T ss_pred CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHH
Confidence 68899997642 2233333333345688889998876443
No 182
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=25.89 E-value=4.8e+02 Score=23.29 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHH-HHHHHHHHHHcCccceeecCC----CCHHH----HHHHhcCC
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIED-TIGELKMLVVEGKIKYIGLSE----ASPDT----IRRAHAVH 102 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e-~~~al~~l~~~G~ir~iGvS~----~~~~~----l~~~~~~~ 102 (272)
+.+.+.+.++..-+..+ +.-+.+-.=++-...+. +.+.++.+..-..++.+|+.+ ..+.. +.+.+...
T Consensus 126 ~~~~~~~~i~~i~~~~~---i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~ 202 (321)
T TIGR03821 126 NKAQWKEALEYIAQHPE---INEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANS 202 (321)
T ss_pred CHHHHHHHHHHHHhcCC---CCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhc
Confidence 34444444444333323 33344444344332222 556666677767777888764 33332 22333334
Q ss_pred Cccee-ecccCcccc--chhhhHHHHHHHhCCceeecccccccc
Q 024086 103 PITAV-QMEWSLLTR--DIEEEIIPLCRELGIGIVPYSPLGRGL 143 (272)
Q Consensus 103 ~~~~~-q~~~n~~~~--~~~~~~~~~~~~~gv~vi~~~~la~G~ 143 (272)
.+..+ ++.+|=... +...+.++.+++.|+.+...+++..|.
T Consensus 203 ~~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 203 RLQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred CCcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCC
Confidence 44444 456653211 112568888999999999999998875
No 183
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=25.78 E-value=3.2e+02 Score=25.13 Aligned_cols=65 Identities=11% Similarity=-0.082 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCccc-eeecCCCCHHHHHHHhcCCCc----ceeecccCcccc-chhhhHHHHHHHhCCce
Q 024086 69 TIGELKMLVVEGKIK-YIGLSEASPDTIRRAHAVHPI----TAVQMEWSLLTR-DIEEEIIPLCRELGIGI 133 (272)
Q Consensus 69 ~~~al~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~----~~~q~~~n~~~~-~~~~~~~~~~~~~gv~v 133 (272)
-++.+.+|++...+- +.|=|.++...+..+++.... +++|+...-.-- ....++.+.|+.+|+.+
T Consensus 244 d~~~~~~L~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit~~~kia~lA~a~gi~~ 314 (385)
T cd03326 244 DYALQAELADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLPEYLRMLDVLEAHGWSR 314 (385)
T ss_pred CHHHHHHHHhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHHHHHHHHHHHHHcCCCC
Confidence 366666777665443 456677888888888887655 888887654321 11268999999999984
No 184
>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins. Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.
Probab=25.73 E-value=38 Score=23.98 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=25.1
Q ss_pred CCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcccee
Q 024086 48 GVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYI 85 (272)
Q Consensus 48 ~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~i 85 (272)
|.|-+| +++.+...-...+|+...-..|.+.|.|+++
T Consensus 32 GsdlVd-WL~~~~~~~~~R~eAv~~g~~Ll~~G~i~HV 68 (84)
T cd04438 32 GSDLVD-WLLSHVEGLTDRREARKYASSLLKLGYIRHT 68 (84)
T ss_pred chHHHH-HHHHhCCCCCCHHHHHHHHHHHHHCCcEEec
Confidence 444455 3333332223468999999999999999987
No 185
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=25.64 E-value=3.6e+02 Score=22.95 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=32.2
Q ss_pred CHHHHHHHhcCCCcceeecccCc-------cccchhhhHHHHHHHhCCceeeccccccc
Q 024086 91 SPDTIRRAHAVHPITAVQMEWSL-------LTRDIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 91 ~~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
+..+..+.+....++.+++..+. +.....+++.+.+.++|+.+.++.+...+
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 34445555555677777764321 11112267888999999999888775543
No 186
>PRK08609 hypothetical protein; Provisional
Probab=25.50 E-value=2.7e+02 Score=27.16 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=17.8
Q ss_pred CcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceee
Q 024086 50 DYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIG 86 (272)
Q Consensus 50 d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iG 86 (272)
||+ |.-+|++. ..+.+++.+.+.++.+.|.+.-||
T Consensus 430 D~v-I~SvH~~~-~~~~~~~~~~l~~a~~~~~~dILa 464 (570)
T PRK08609 430 DYV-IAAIHSSF-SQSEEEIMKRLENACRNPYVRLIA 464 (570)
T ss_pred CEE-EEEeecCC-CCCHHHHHHHHHHHhcCCCceEEE
Confidence 444 55555432 223445556666666666555444
No 187
>PLN02449 ferrochelatase
Probab=25.27 E-value=4.7e+02 Score=25.06 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHHhhhCCC----cccEEEeccCCCCCCHH-HHHHHHHHHHHcCc----cceeecCCCCHHHHHHH
Q 024086 32 TPEYVRSCCEASLKRLGVD----YIDLYYQHRVDPSVPIE-DTIGELKMLVVEGK----IKYIGLSEASPDTIRRA 98 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d----~iDl~~lH~~~~~~~~~-e~~~al~~l~~~G~----ir~iGvS~~~~~~l~~~ 98 (272)
-.+.+++..+...++|+.+ ...+.+--+.++..++. .+-++|++|.++|. |--||+.+.+.+.+.++
T Consensus 298 Y~~q~~~ta~lI~~~L~~~~~~~~~~layQSR~Gp~eWL~P~t~d~L~~L~~~Gvk~VlvvPigFvSDhiETL~Ei 373 (485)
T PLN02449 298 YKAQMEECVDLIMEELKARGILNRHTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSLLAVPISFVSEHIETLEEI 373 (485)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHcCCCeEEEECCcccccchHHHHHH
Confidence 3688999999999999873 24455444455544432 57788899999985 23335555566655444
No 188
>PRK15005 universal stress protein F; Provisional
Probab=25.05 E-value=2.9e+02 Score=20.53 Aligned_cols=27 Identities=7% Similarity=0.214 Sum_probs=20.5
Q ss_pred ccccchhhhHHHHHHHhCCceeecccc
Q 024086 113 LLTRDIEEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 113 ~~~~~~~~~~~~~~~~~gv~vi~~~~l 139 (272)
+....+...+++++.++++.++.++.-
T Consensus 90 v~~G~p~~~I~~~a~~~~~DLIV~Gs~ 116 (144)
T PRK15005 90 VEEGSPKDRILELAKKIPADMIIIASH 116 (144)
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 334455678999999999998888654
No 189
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=24.98 E-value=3.2e+02 Score=23.51 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=45.2
Q ss_pred ccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCccc
Q 024086 28 IVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVP-IEDTIGELKMLVVEGKIK 83 (272)
Q Consensus 28 ~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~-~~e~~~al~~l~~~G~ir 83 (272)
..+.+++...+...-..+-+++|.|-+=.|-......+ .-|++++-|.|+++|.+-
T Consensus 77 aGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 77 AGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred cccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE
Confidence 34778899889899999999999998888776655433 468999999999999743
No 190
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=24.96 E-value=1.1e+02 Score=27.01 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhhCCCccc--EEE-eccCCCCCCHHHHHHHHHHHHHcCccce
Q 024086 33 PEYVRSCCEASLKRLGVDYID--LYY-QHRVDPSVPIEDTIGELKMLVVEGKIKY 84 (272)
Q Consensus 33 ~~~i~~~le~SL~~L~~d~iD--l~~-lH~~~~~~~~~e~~~al~~l~~~G~ir~ 84 (272)
.+...+.+.+.+++||+.+ | .++ =+.+ ...+.+++.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 5667778899999999854 4 322 2222 235679999999999999765
No 191
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=24.90 E-value=3.5e+02 Score=22.27 Aligned_cols=94 Identities=12% Similarity=0.042 Sum_probs=58.6
Q ss_pred HHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceeecccC-cccc
Q 024086 38 SCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQMEWS-LLTR 116 (272)
Q Consensus 38 ~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n-~~~~ 116 (272)
+.+-+.|.. .-..+..+.+.. .-+...++.+.|- ..+-.+-.+.+.+.+++......++.+..+ ....
T Consensus 12 ~~v~~~L~~---~~~~V~~l~R~~-------~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~ 80 (233)
T PF05368_consen 12 RSVVRALLS---AGFSVRALVRDP-------SSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSHPSEL 80 (233)
T ss_dssp HHHHHHHHH---TTGCEEEEESSS-------HHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHH
T ss_pred HHHHHHHHh---CCCCcEEEEecc-------chhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcchhhhh
Confidence 444444444 336788888764 1223445666776 456666678889999988665444444433 2222
Q ss_pred chhhhHHHHHHHhCCceeeccccccc
Q 024086 117 DIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 117 ~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
.....+++.|++.||..+.++.++..
T Consensus 81 ~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 81 EQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhhhHHHhhhccccceEEEEEeccc
Confidence 33478999999999999998888754
No 192
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.75 E-value=5.2e+02 Score=23.32 Aligned_cols=109 Identities=13% Similarity=-0.028 Sum_probs=68.5
Q ss_pred CCCcEEEEecccccCCCC----cc--cccCCCHHHHHHHHHHHHhhhCCCcccEEEeccC-CCCCCHHHHHHHHHHHHHc
Q 024086 7 PRKKIQLASKFGVVSMAP----TS--VIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRV-DPSVPIEDTIGELKMLVVE 79 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~----~~--~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~-~~~~~~~e~~~al~~l~~~ 79 (272)
.|..+.|||..|....+. +. .....++..|..++....+.++ +.+|-+.+-.. .|..+.+.+..+++.+++.
T Consensus 95 ~~~t~cvSsq~GC~l~C~fC~tg~~g~~r~l~~~EI~~qi~~~~~~~~-~~i~nIvfmGmGEPllN~d~v~~~i~~l~~~ 173 (336)
T PRK14470 95 THHVVCLSSQAGCALGCAFCATGKLGLDRSLRSWEIVAQLLAVRADSE-RPITGVVFMGQGEPFLNYDEVLRAAYALCDP 173 (336)
T ss_pred CCCEEEEeCCCCcCCCCccccCCCCCCCCCCCHHHHHHHHHHHHHhcC-CCCCEEEEEecCccccCHHHHHHHHHHHhCc
Confidence 477899999988665431 21 3346788999998887776664 45677776664 3445567788888888753
Q ss_pred ---C-ccceeecCCCC-HHHHHHHhcCCCcceeecccCcccc
Q 024086 80 ---G-KIKYIGLSEAS-PDTIRRAHAVHPITAVQMEWSLLTR 116 (272)
Q Consensus 80 ---G-~ir~iGvS~~~-~~~l~~~~~~~~~~~~q~~~n~~~~ 116 (272)
+ --+.|.||+-. ...+.+++.....+.+.+..|..++
T Consensus 174 ~~~~~~~~~ItVsTnG~~p~i~~l~~~~~~~~LaiSLhA~~~ 215 (336)
T PRK14470 174 AGARIDGRRISISTAGVVPMIRRYTAEGHKFRLCISLNAAIP 215 (336)
T ss_pred cccccCCCceEEEecCChHHHHHHHhcCCCceEEEecCCCCH
Confidence 1 13577777653 3455666554433445555555444
No 193
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=24.63 E-value=1.5e+02 Score=24.19 Aligned_cols=52 Identities=19% Similarity=0.239 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCC
Q 024086 37 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEAS 91 (272)
Q Consensus 37 ~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~ 91 (272)
+.+++++|..-. -+|++++..-.....++-++.++++..+|++|++-+.-++
T Consensus 66 e~~f~~~L~e~s---n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 66 EQSFEDALLEAS---NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred HHHHHHHHHHHh---CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 344555555543 4788888665544557789999999999999998664433
No 194
>PRK15456 universal stress protein UspG; Provisional
Probab=24.57 E-value=3.1e+02 Score=20.56 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=25.9
Q ss_pred ecccCccccchhhhHHHHHHHhCCceeeccccccc
Q 024086 108 QMEWSLLTRDIEEEIIPLCRELGIGIVPYSPLGRG 142 (272)
Q Consensus 108 q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~la~G 142 (272)
++...+....+.+.+.++++++++.++.++.-++|
T Consensus 83 ~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~ 117 (142)
T PRK15456 83 RIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPS 117 (142)
T ss_pred ceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCC
Confidence 34444444455678999999999999999887655
No 195
>PRK06424 transcription factor; Provisional
Probab=24.55 E-value=2.1e+02 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 024086 175 QIYARVENLAKRNKCTPAQLSLAWLLR 201 (272)
Q Consensus 175 ~~~~~l~~la~~~~~s~~~lal~~~l~ 201 (272)
...+.+..+..+.|+|..++|-+--.+
T Consensus 84 ~~g~~Ir~lRe~~GLSQ~eLA~~iGvs 110 (144)
T PRK06424 84 DYAELVKNARERLSMSQADLAAKIFER 110 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCC
Confidence 345677788888999999988665544
No 196
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=24.40 E-value=4.3e+02 Score=23.79 Aligned_cols=40 Identities=13% Similarity=0.053 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCccceeecCC-CCHHHHHHHhcCCCcceeec
Q 024086 70 IGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQM 109 (272)
Q Consensus 70 ~~al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~ 109 (272)
++.....++.=.+--|++.+ ++++.++++++....|.+.+
T Consensus 274 ~~~~~~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~ 314 (343)
T cd04734 274 LPLAARIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVGM 314 (343)
T ss_pred HHHHHHHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeeee
Confidence 44444444443455555555 36677777776666666655
No 197
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=24.36 E-value=1.9e+02 Score=21.31 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHhcCCCcceeecccCccccchhhhHHHHHHHhCCceeecccc
Q 024086 88 SEASPDTIRRAHAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 88 S~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~l 139 (272)
+.-+.+.+..++....++++-+...--.+.+..++.++++++|+++..+..-
T Consensus 37 ~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~ 88 (109)
T cd00248 37 SDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTG 88 (109)
T ss_pred ccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcH
Confidence 3345555655555433556655444333344567899999999999887543
No 198
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=24.22 E-value=3.5e+02 Score=21.20 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhhhC--CCcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 024086 31 GTPEYVRSCCEASLKRLG--VDYIDLYYQHRVDPS-VPIEDTIGELKMLVVE 79 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~--~d~iDl~~lH~~~~~-~~~~e~~~al~~l~~~ 79 (272)
..++.|.+.+.++++.+. +...|++++-.+... .+..++.+.|..|.++
T Consensus 63 V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 63 VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 367788888888877553 233499999887643 4567888888887665
No 199
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=24.21 E-value=1.4e+02 Score=22.86 Aligned_cols=40 Identities=8% Similarity=0.019 Sum_probs=16.2
Q ss_pred HHHHHhhhCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 024086 40 CEASLKRLGVDYIDLYYQHRVDPS-VPIEDTIGELKMLVVE 79 (272)
Q Consensus 40 le~SL~~L~~d~iDl~~lH~~~~~-~~~~e~~~al~~l~~~ 79 (272)
+.+.|+.+....+|+++++..+.- ....+....++.+.+.
T Consensus 57 l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~ 97 (140)
T cd03770 57 FNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPK 97 (140)
T ss_pred HHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhh
Confidence 333333333344455554444332 2233344444444443
No 200
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=24.21 E-value=1.2e+02 Score=26.72 Aligned_cols=66 Identities=21% Similarity=0.162 Sum_probs=49.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhHhccC--------CC--CCHHHHHHHHhhCCCC
Q 024086 179 RVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENIGSLM--------MK--LTKEDMKEILNFVPIE 244 (272)
Q Consensus 179 ~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl~~~~--------~~--Lt~e~~~~l~~~~~~~ 244 (272)
....+++++|+...---+.=.+..+.|..|++.+.+..|.+-.+++++ +| +|.+|.++|-++.+..
T Consensus 42 ~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 42 RAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 577888899987222235667888889999999999888888887763 34 4888888887777554
No 201
>PRK11024 colicin uptake protein TolR; Provisional
Probab=24.11 E-value=1.7e+02 Score=22.54 Aligned_cols=53 Identities=23% Similarity=0.251 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS 88 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS 88 (272)
.+.+.+...+.+.+.. .-|...+=+.|.+.+++.+++.|+.+++.|. ..+++.
T Consensus 85 v~~~~L~~~l~~~~~~----~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~-~~v~l~ 137 (141)
T PRK11024 85 LPEEQVVAEAKSRFKA----NPKTVFLIGGAKDVPYDEIIKALNLLHSAGV-KSVGLM 137 (141)
T ss_pred cCHHHHHHHHHHHHhh----CCCceEEEEcCCCCCHHHHHHHHHHHHHcCC-CeEEEE
Confidence 3556666555555443 2244344455777889999999999999984 446654
No 202
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=24.10 E-value=3.8e+02 Score=21.49 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=52.5
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcC--CCcceeecccCcccc-----chhhhHHHHHH
Q 024086 55 YYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV--HPITAVQMEWSLLTR-----DIEEEIIPLCR 127 (272)
Q Consensus 55 ~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~-----~~~~~~~~~~~ 127 (272)
+++..|..+ +-+++++..-+=-+++-|++|=|.+-+.....++++. ..+.++-+.|+.-.. ..+.++-+..+
T Consensus 2 ~yf~~pG~e-NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~ 80 (186)
T COG1751 2 VYFEKPGKE-NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELK 80 (186)
T ss_pred ccccCCccc-chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHH
Confidence 445555443 3466666555555566688887766555555555554 224566666654332 23478899999
Q ss_pred HhCCceeeccccccc
Q 024086 128 ELGIGIVPYSPLGRG 142 (272)
Q Consensus 128 ~~gv~vi~~~~la~G 142 (272)
++|..|..-+-.-+|
T Consensus 81 erGa~v~~~sHalSg 95 (186)
T COG1751 81 ERGAKVLTQSHALSG 95 (186)
T ss_pred HcCceeeeehhhhhc
Confidence 999988876554444
No 203
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=24.07 E-value=1.1e+02 Score=27.22 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcc
Q 024086 33 PEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKI 82 (272)
Q Consensus 33 ~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~i 82 (272)
.+...+.+.+.+++||++ +|.+.-.. .....+.+.+.+++|+++|.|
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~tt--~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRTT--SPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeCC--CHHHHHHHHHHHHHHHHCCCE
Confidence 556677889999999986 57543221 111335688999999999998
No 204
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=23.93 E-value=5.7e+02 Score=23.70 Aligned_cols=85 Identities=14% Similarity=0.217 Sum_probs=48.6
Q ss_pred cccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCC-cceeecccCccccchhhhHHHHHHHh
Q 024086 51 YIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHP-ITAVQMEWSLLTRDIEEEIIPLCREL 129 (272)
Q Consensus 51 ~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~ 129 (272)
.+|++.||.-..+ +.++..++.++..+.-.+ -+=+.+.+++.+.++++... -... -|..-..+. +++.+.|.++
T Consensus 69 ~~D~Ialr~~S~D-Pae~fa~~vk~V~~a~~~-PLIL~~~D~evl~aale~~~~~kpL--L~aAt~eNy-k~m~~lA~~y 143 (386)
T PF03599_consen 69 GADMIALRLESGD-PAEEFAKAVKKVAEAVDV-PLILCGCDPEVLKAALEACAGKKPL--LYAATEENY-KAMAALAKEY 143 (386)
T ss_dssp E-SEEEEE-GGGS-THHHHHHHHHHHHHC-SS-EEEEESSHHHHHHHHHHHTTTS--E--EEEEBTTTH-HHHHHHHHHC
T ss_pred cccEEEEEecCCC-hHHHHHHHHHHHHHhcCC-CEEEEeCCHHHHHHHHHHhCcCCcE--EeEcCHHHH-HHHHHHHHHc
Confidence 6788889876432 146666666666664333 33333448888888877522 1111 122222232 6889999999
Q ss_pred CCceeeccccc
Q 024086 130 GIGIVPYSPLG 140 (272)
Q Consensus 130 gv~vi~~~~la 140 (272)
|..+++++|..
T Consensus 144 ~~pl~v~sp~D 154 (386)
T PF03599_consen 144 GHPLIVSSPID 154 (386)
T ss_dssp T-EEEEE-SSC
T ss_pred CCeEEEEeccc
Confidence 99999999774
No 205
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=23.90 E-value=3.4e+02 Score=20.83 Aligned_cols=48 Identities=15% Similarity=0.083 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhhhCC----CcccEEEeccCCCC-CCHHHHHHHHHHHHH
Q 024086 31 GTPEYVRSCCEASLKRLGV----DYIDLYYQHRVDPS-VPIEDTIGELKMLVV 78 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~----d~iDl~~lH~~~~~-~~~~e~~~al~~l~~ 78 (272)
..++.|.+-|.++++.+.. ...|++++-.+... .+..++.+.|+.+.+
T Consensus 61 V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 61 VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 4688899999999887753 45799999998653 455666666666554
No 206
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=23.75 E-value=1.1e+02 Score=29.10 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccce
Q 024086 33 PEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKY 84 (272)
Q Consensus 33 ~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~ 84 (272)
.+.....+.+.|++||++ +|.+. +.......+.+.+.+++|.++|.|-.
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~--~t~~~~~~~~v~~~~~~L~~~G~iY~ 117 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFI--RTTDPRHKEAVQEIFQRLLANGDIYL 117 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCce--eCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 556677889999999987 67542 11111235789999999999999754
No 207
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=23.73 E-value=6.2e+02 Score=23.80 Aligned_cols=102 Identities=12% Similarity=0.095 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHhhh-CCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeec--CCCCHHHHHHHhcCCCcce
Q 024086 30 KGTPEYVRSCCEASLKRL-GVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGL--SEASPDTIRRAHAVHPITA 106 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L-~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGv--S~~~~~~l~~~~~~~~~~~ 106 (272)
..+++.|.+.++...++. ++ .-+++...+.....+.+.+.++.+++.|. ..... .+.+.+.++.+.+. .+..
T Consensus 226 ~rs~e~V~~Ei~~~~~~~~~~---~~i~f~Dd~f~~~~~~~~~l~~~l~~~~i-~~~~~~~~~~~~e~l~~l~~a-G~~~ 300 (472)
T TIGR03471 226 TRSAESVIEEVKYALENFPEV---REFFFDDDTFTDDKPRAEEIARKLGPLGV-TWSCNARANVDYETLKVMKEN-GLRL 300 (472)
T ss_pred eCCHHHHHHHHHHHHHhcCCC---cEEEEeCCCCCCCHHHHHHHHHHHhhcCc-eEEEEecCCCCHHHHHHHHHc-CCCE
Confidence 347889999999888776 33 33444433333334445555555565553 22221 23455544444332 3333
Q ss_pred eecccCccccc------------hhhhHHHHHHHhCCceeec
Q 024086 107 VQMEWSLLTRD------------IEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 107 ~q~~~n~~~~~------------~~~~~~~~~~~~gv~vi~~ 136 (272)
+.+..--.++. ...+.++.++++|+.+.+.
T Consensus 301 v~iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~ 342 (472)
T TIGR03471 301 LLVGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGT 342 (472)
T ss_pred EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 33333222111 1146788888888876654
No 208
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=23.72 E-value=3.3e+02 Score=20.61 Aligned_cols=48 Identities=2% Similarity=-0.121 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhhhCCC---cccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 024086 32 TPEYVRSCCEASLKRLGVD---YIDLYYQHRVDPS-VPIEDTIGELKMLVVE 79 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d---~iDl~~lH~~~~~-~~~~e~~~al~~l~~~ 79 (272)
-++.|.+-|.++.+.+..+ -.|++++-.+... .+..++.+.|+.+.+.
T Consensus 63 ~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 63 IRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 5788888888888777643 3699999988654 4566777777766544
No 209
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=23.70 E-value=5.4e+02 Score=23.17 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=70.5
Q ss_pred ccCCCCcEEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc
Q 024086 4 KQLPRKKIQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK 83 (272)
Q Consensus 4 ~~~~R~~~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir 83 (272)
-...|+++=++|+++......|=+.-..+. .|.+.+-...++.| -+..+|.. ..++.....++.+..|++-
T Consensus 18 p~~s~~dvdlst~~~~~~l~~P~~inAM~t-~iN~~LA~~a~~~G----~~~~~~k~----~~e~~~~~~r~~~~~~l~v 88 (326)
T PRK05458 18 IVNSRSECDTSVTLGPRTFKLPVVPANMQT-IIDEKIAEWLAENG----YFYIMHRF----DPEARIPFIKDMHEQGLIA 88 (326)
T ss_pred CCCCHHHcccceEECCcEecCcEEEecccc-hhHHHHHHHHHHcC----CEEEEecC----CHHHHHHHHHhccccccEE
Confidence 334788999999987432222211112233 88888999999987 36677873 2344444445555667765
Q ss_pred eeecCC--CCHHHHHHHhcCC-CcceeecccCccccchhhhHHHHHHHh--CCceee
Q 024086 84 YIGLSE--ASPDTIRRAHAVH-PITAVQMEWSLLTRDIEEEIIPLCREL--GIGIVP 135 (272)
Q Consensus 84 ~iGvS~--~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~~~~~~~~~~~--gv~vi~ 135 (272)
.++++. ...+++.++++.. ..|++++....-+.+.-.+++...++. ++.|++
T Consensus 89 ~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~ 145 (326)
T PRK05458 89 SISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA 145 (326)
T ss_pred EEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE
Confidence 555543 3345666666653 357888754443333234555555554 355555
No 210
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.69 E-value=5.6e+02 Score=23.26 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=60.6
Q ss_pred CCCcEEEEecccccCCCC----c--ccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHH-c
Q 024086 7 PRKKIQLASKFGVVSMAP----T--SVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVV-E 79 (272)
Q Consensus 7 ~R~~~~IstK~~~~~~~~----~--~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~-~ 79 (272)
.|..+.|||=.|....+. + ......+.+.|..++....+..+++.| .++-.-+|..+.+++++++..+.+ .
T Consensus 101 ~~~t~cvSsq~GC~~~C~FC~tg~~~~~r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~ 178 (349)
T PRK14463 101 DRNTLCISSQVGCAMGCAFCLTGTFRLTRNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPD 178 (349)
T ss_pred CCcEEEEEecCCcCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhccc
Confidence 578888998887654431 1 123467899999999887766555433 444434455567889999999885 5
Q ss_pred Cc---cceeecCCCC-HHHHHHHhc
Q 024086 80 GK---IKYIGLSEAS-PDTIRRAHA 100 (272)
Q Consensus 80 G~---ir~iGvS~~~-~~~l~~~~~ 100 (272)
|. .+.+.||+.. ...+.++..
T Consensus 179 gl~~s~r~itVsTnGl~~~i~~l~~ 203 (349)
T PRK14463 179 GLQFSTRKVTVSTSGLVPEMEELGR 203 (349)
T ss_pred ccCcCCceEEEECCCchHHHHHHhh
Confidence 65 4677777653 345555544
No 211
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=23.60 E-value=88 Score=29.51 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=15.3
Q ss_pred HHHHHHHHcCccc-eeecCCCCHHHH
Q 024086 71 GELKMLVVEGKIK-YIGLSEASPDTI 95 (272)
Q Consensus 71 ~al~~l~~~G~ir-~iGvS~~~~~~l 95 (272)
+.++.+++.|..+ .+|+=+.+.+.+
T Consensus 288 e~l~~l~~aG~~~v~iGiES~s~~~L 313 (472)
T TIGR03471 288 ETLKVMKENGLRLLLVGYESGDQQIL 313 (472)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCHHHH
Confidence 3455566677654 788866665443
No 212
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=23.53 E-value=2e+02 Score=22.23 Aligned_cols=55 Identities=24% Similarity=0.166 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCC
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSE 89 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~ 89 (272)
..+.+.+...+++..+.- -+.-.+=..|.+.+++.+.+.|..+++.| +..+|+.+
T Consensus 80 ~v~~~~L~~~L~~~~~~~----~~~~V~I~aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 80 PVTDETMITALDALTEGK----KDTTIFFRADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred cccHHHHHHHHHHHHhcC----CCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 345566666666544322 23333334567788999999999999999 45677755
No 213
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=23.39 E-value=4.3e+02 Score=22.64 Aligned_cols=109 Identities=18% Similarity=0.257 Sum_probs=62.5
Q ss_pred EEEEecccccCCCCcccccCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHH-------HHHcCccc
Q 024086 11 IQLASKFGVVSMAPTSVIVKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKM-------LVVEGKIK 83 (272)
Q Consensus 11 ~~IstK~~~~~~~~~~~~~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~-------l~~~G~ir 83 (272)
.-||..+|-. .+.+..+..+....- .-|+|||=+=+.-..+ .++.++.|+. .-...++-
T Consensus 53 ~pvSAtiGDl---------p~~p~~~~~aa~~~a-~~GvdyvKvGl~g~~~----~~~a~e~l~~v~~av~~~~~~~~vV 118 (235)
T PF04476_consen 53 KPVSATIGDL---------PMKPGTASLAALGAA-ATGVDYVKVGLFGCKD----YDEAIEALEAVVRAVKDFDPDKKVV 118 (235)
T ss_pred CceEEEecCC---------CCCchHHHHHHHHHH-hcCCCEEEEecCCCCC----HHHHHHHHHHHHHHHhhhCCCcEEE
Confidence 4566666633 234555655555444 3588888876664332 3333333333 33345677
Q ss_pred eeecCCCC------HHHHHHHhcCCCcceeeccc------Ccccc---chhhhHHHHHHHhCCce
Q 024086 84 YIGLSEAS------PDTIRRAHAVHPITAVQMEW------SLLTR---DIEEEIIPLCRELGIGI 133 (272)
Q Consensus 84 ~iGvS~~~------~~~l~~~~~~~~~~~~q~~~------n~~~~---~~~~~~~~~~~~~gv~v 133 (272)
+.+++.+. +..+.++.....++.+|+.. ++++. ....+.++.|+.+|+.+
T Consensus 119 Av~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 119 AVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred EEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 88888763 45566666666788888843 23322 22256788888888643
No 214
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=23.27 E-value=4.7e+02 Score=22.31 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEE
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYY 56 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~ 56 (272)
..+.+.-.+.+....+.-+.||+||=+
T Consensus 74 ~~~~~~~i~ll~~la~~~~~d~iDiEl 100 (231)
T COG0710 74 PGSEEEYIELLKKLAELNGPDYIDIEL 100 (231)
T ss_pred CCCHHHHHHHHHHHHhhcCCCEEEEEc
Confidence 446667777777777777789999643
No 215
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=23.23 E-value=45 Score=26.87 Aligned_cols=99 Identities=13% Similarity=0.150 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhhCCCcccEEEeccCCC--------------CCCHHHHHHHHHHHHHcC-ccceeecCCC--CHHHHHHH
Q 024086 36 VRSCCEASLKRLGVDYIDLYYQHRVDP--------------SVPIEDTIGELKMLVVEG-KIKYIGLSEA--SPDTIRRA 98 (272)
Q Consensus 36 i~~~le~SL~~L~~d~iDl~~lH~~~~--------------~~~~~e~~~al~~l~~~G-~ir~iGvS~~--~~~~l~~~ 98 (272)
+..+++...+.+-.+-.|++.-+.... ..+..+++++|.++++.| +|..+|..+. +...+..+
T Consensus 19 ~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~l 98 (176)
T PF06506_consen 19 LEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEEL 98 (176)
T ss_dssp HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHH
Confidence 344555444442335678777664411 123458899999998777 7777777775 35666666
Q ss_pred hcCCCcceeecccCccccchhhhHHHHHHHhCCceeecccc
Q 024086 99 HAVHPITAVQMEWSLLTRDIEEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 99 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gv~vi~~~~l 139 (272)
+. ++..+..|+- ..--+..+..++..|+.++.-+..
T Consensus 99 l~---~~i~~~~~~~--~~e~~~~i~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 99 LG---VDIKIYPYDS--EEEIEAAIKQAKAEGVDVIVGGGV 134 (176)
T ss_dssp HT----EEEEEEESS--HHHHHHHHHHHHHTT--EEEESHH
T ss_pred hC---CceEEEEECC--HHHHHHHHHHHHHcCCcEEECCHH
Confidence 64 3555555543 222367888999999988875433
No 216
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.14 E-value=2.9e+02 Score=23.72 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhCCCcccEEEeccCCCCCCHHH-HHHHHHHHHHcCccceeecCCC-CH----HHHHH---HhcCCCccee
Q 024086 37 RSCCEASLKRLGVDYIDLYYQHRVDPSVPIED-TIGELKMLVVEGKIKYIGLSEA-SP----DTIRR---AHAVHPITAV 107 (272)
Q Consensus 37 ~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e-~~~al~~l~~~G~ir~iGvS~~-~~----~~l~~---~~~~~~~~~~ 107 (272)
.+.++..|+-.| +|||++=+-|-......++ +-+.++-+++-|---+.| .++ .. ..+.+ .+....|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 467888899999 8999999988655433333 444455566677766666 221 11 11222 2333567788
Q ss_pred ecccCccccchh--hhHHHHHHHhCCceee
Q 024086 108 QMEWSLLTRDIE--EEIIPLCRELGIGIVP 135 (272)
Q Consensus 108 q~~~n~~~~~~~--~~~~~~~~~~gv~vi~ 135 (272)
.+.=..++-..+ ..+++.++++|+-+.+
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 776665554322 4678888888877764
No 217
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=23.03 E-value=2.9e+02 Score=24.49 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=35.8
Q ss_pred HHHHHHHhcCC------CHHHHHHHHHHhCCCCeEeecCCCCHHHHHHhH
Q 024086 179 RVENLAKRNKC------TPAQLSLAWLLRQGDDIVPIPGTTKIKNLDENI 222 (272)
Q Consensus 179 ~l~~la~~~~~------s~~~lal~~~l~~~~v~~vl~G~~~~~~l~~nl 222 (272)
+|.++|++.|. ++.++=..|..... ...+-.|+|+|+.|-+++
T Consensus 229 rL~eiA~~~g~~aylId~~~ei~~~w~~~~~-~VGvTAGAStPd~lV~~V 277 (294)
T COG0761 229 RLAEIAKRHGKPAYLIDDAEEIDPEWLKGVK-TVGVTAGASTPDWLVQEV 277 (294)
T ss_pred HHHHHHHHhCCCeEEeCChHhCCHHHhcCcc-EEEEecCCCCCHHHHHHH
Confidence 78899999987 56888888888744 478889999999998876
No 218
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.98 E-value=5.7e+02 Score=23.17 Aligned_cols=87 Identities=11% Similarity=0.169 Sum_probs=54.1
Q ss_pred EEeccCCCC-----------CCHHHHHHHHHHHHHcC----ccceeecC--CCCHHHHHH---HhcCCCcceeecccCcc
Q 024086 55 YYQHRVDPS-----------VPIEDTIGELKMLVVEG----KIKYIGLS--EASPDTIRR---AHAVHPITAVQMEWSLL 114 (272)
Q Consensus 55 ~~lH~~~~~-----------~~~~e~~~al~~l~~~G----~ir~iGvS--~~~~~~l~~---~~~~~~~~~~q~~~n~~ 114 (272)
+-||.++++ .+++++++++.+....+ +++++=+. |.+.+.+.+ ++...+..++-++||..
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 568888542 23567888887776654 23345443 344455444 44445567888999986
Q ss_pred ccc----hh----hhHHHHHHHhCCceeecccccc
Q 024086 115 TRD----IE----EEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 115 ~~~----~~----~~~~~~~~~~gv~vi~~~~la~ 141 (272)
... +. ..+.+..+++|+.+..+...+.
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~ 325 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGS 325 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 421 11 3456677888999988877654
No 219
>PRK10551 phage resistance protein; Provisional
Probab=22.95 E-value=3.4e+02 Score=26.05 Aligned_cols=102 Identities=12% Similarity=0.179 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEE-eccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCH--HHHHHHhcCCCcceee
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYY-QHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASP--DTIRRAHAVHPITAVQ 108 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~-lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q 108 (272)
..+.+...+.+.++.++.+..-+.+ +........ .++.+.++.|++.|- .|.+.+|+. ..+.. +...++|.+-
T Consensus 362 ~~~~f~~~l~~~l~~~~~~~~~LvlEItE~~~~~~-~~~~~~l~~Lr~~G~--~ialDDFGtg~ssl~~-L~~l~vD~lK 437 (518)
T PRK10551 362 HSDSFKADVQRLLASLPADHFQIVLEITERDMVQE-EEATKLFAWLHSQGI--EIAIDDFGTGHSALIY-LERFTLDYLK 437 (518)
T ss_pred CCchHHHHHHHHHHhCCCCcceEEEEEechHhcCC-HHHHHHHHHHHHCCC--EEEEECCCCCchhHHH-HHhCCCCEEE
Confidence 4455677788888888876433222 332211122 456788999999999 666655532 22222 2223445554
Q ss_pred cccCcc--------ccchhhhHHHHHHHhCCceeecc
Q 024086 109 MEWSLL--------TRDIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 109 ~~~n~~--------~~~~~~~~~~~~~~~gv~vi~~~ 137 (272)
+.-++. .+..-..++..|++.|+.+++-+
T Consensus 438 ID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAEG 474 (518)
T PRK10551 438 IDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAEG 474 (518)
T ss_pred ECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 433222 12223568999999999998853
No 220
>KOG3380 consensus Actin-related protein Arp2/3 complex, subunit ARPC5 [Cytoskeleton]
Probab=22.94 E-value=64 Score=25.46 Aligned_cols=47 Identities=19% Similarity=0.190 Sum_probs=34.1
Q ss_pred HHHHHHhhhCCCcccEEEec------cCCCCCCHHHHHHHHHHHHHcCcccee
Q 024086 39 CCEASLKRLGVDYIDLYYQH------RVDPSVPIEDTIGELKMLVVEGKIKYI 85 (272)
Q Consensus 39 ~le~SL~~L~~d~iDl~~lH------~~~~~~~~~e~~~al~~l~~~G~ir~i 85 (272)
.|+++++.|-++++|+++=. .|........++.+.|++.+.|=+..|
T Consensus 90 dI~~~v~~Ls~e~~DiLmKYiYkGm~~p~d~~s~~~LL~WHEk~~~~~GvG~I 142 (152)
T KOG3380|consen 90 DIEAAVKKLSTEEIDILMKYIYKGMEIPSDNSSCVSLLQWHEKLVAKSGVGCI 142 (152)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHhcCCceE
Confidence 58899999999999987622 233333334589999999988866655
No 221
>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins. DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.
Probab=22.84 E-value=34 Score=24.03 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHcCccceee
Q 024086 64 VPIEDTIGELKMLVVEGKIKYIG 86 (272)
Q Consensus 64 ~~~~e~~~al~~l~~~G~ir~iG 86 (272)
...+|+++..++|.+.|.|.++.
T Consensus 47 ~~r~eAv~lgq~Ll~~g~I~hv~ 69 (83)
T cd04449 47 DTREEAVELGQELMNEGLIEHVS 69 (83)
T ss_pred CCHHHHHHHHHHHHHCCCEEecC
Confidence 45689999999999999999874
No 222
>PF02971 FTCD: Formiminotransferase domain; InterPro: IPR013802 The formiminotransferase (FT) domain of formiminotransferase-cyclodeaminase (FTCD) forms a homodimer, with each protomer being comprised of two subdomains. The formiminotransferase domain has an N-terminal subdomain that is made up of a six-stranded mixed beta-pleated sheet and five alpha helices, which are arranged on the external surface of the beta sheet. This, in turn, faces the beta-sheet of the C-terminal subdomain to form a double beta-sheet layer. The two subdomains are separated by a short linker sequence, which is not thought to be any more flexible than the remainder of the molecule. The substrate is predicted to form a number of contacts with residues found in both the N-terminal and C-terminal subdomains []. In humans, deficiency of this enzyme results in a disease phenotype []. This entry represents the C-terminal subdomain of the formiminotransferase domain.; GO: 0005542 folic acid binding, 0016740 transferase activity, 0008152 metabolic process; PDB: 1QD1_B 2PFD_C.
Probab=22.39 E-value=1.4e+02 Score=23.49 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=22.7
Q ss_pred ceeecccCccccch------hhhHHHHHHHhCCceeecccc
Q 024086 105 TAVQMEWSLLTRDI------EEEIIPLCRELGIGIVPYSPL 139 (272)
Q Consensus 105 ~~~q~~~n~~~~~~------~~~~~~~~~~~gv~vi~~~~l 139 (272)
...|+.+|+.+... .+.+-..|+++|+.|.+..-.
T Consensus 50 ~~aQVSmNltd~~~Tpl~~vfe~v~~eA~~~Gv~v~gsElV 90 (145)
T PF02971_consen 50 GIAQVSMNLTDYEKTPLHRVFEEVKREAARYGVPVVGSELV 90 (145)
T ss_dssp TEEEEEEEES-TTTS-HHHHHHHHHHHHHCTT--EEEEEEE
T ss_pred CeeEEEEeeecCCCCcHHHHHHHHHHHHHHhCCCccceEEE
Confidence 57888888887641 256777788889998876543
No 223
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=22.33 E-value=1e+02 Score=29.46 Aligned_cols=17 Identities=12% Similarity=0.016 Sum_probs=10.3
Q ss_pred hhHHHHHHHhCCceeec
Q 024086 120 EEIIPLCRELGIGIVPY 136 (272)
Q Consensus 120 ~~~~~~~~~~gv~vi~~ 136 (272)
.+.++++.+.+...+.+
T Consensus 356 ~~t~~~~~~l~~~~~~~ 372 (497)
T TIGR02026 356 EETYRQLLDWDPDQANW 372 (497)
T ss_pred HHHHHHHHHcCCCceEE
Confidence 45677777776554443
No 224
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=22.30 E-value=2.8e+02 Score=22.39 Aligned_cols=47 Identities=15% Similarity=0.080 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHH
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLV 77 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~ 77 (272)
.+.+.+...+...++-+|.+.++.+.++..+....-+..-++++++.
T Consensus 150 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
T PF02525_consen 150 RSMDHLLPYLRGILKFCGIKDVESFSFEGVDNPDREEALEKALERAA 196 (199)
T ss_dssp SHHHHHHHHHHHHHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHH
T ss_pred CChhhhHHHHHHHHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHH
Confidence 35788888899999999999999999998762222233444555443
No 225
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=22.18 E-value=4.7e+02 Score=21.91 Aligned_cols=85 Identities=12% Similarity=0.057 Sum_probs=45.6
Q ss_pred HHHhhhCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCccceeecCC-CCHHHHHHHhcCCCcceeecccCccccch-
Q 024086 42 ASLKRLGVDYIDLYYQHRVDPSVPIE-DTIGELKMLVVEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQMEWSLLTRDI- 118 (272)
Q Consensus 42 ~SL~~L~~d~iDl~~lH~~~~~~~~~-e~~~al~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~- 118 (272)
+.++.+|. |.+.+|..+...... --++.+.++++.-.+.-|.... .+++.+.++++....+.+++.--+.....
T Consensus 156 ~~l~~~G~---d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELGA---GEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCCC---CEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 44556665 556666554321111 1255566666655566666554 46778888877766677766333222211
Q ss_pred hhhHHHHHHHh
Q 024086 119 EEEIIPLCREL 129 (272)
Q Consensus 119 ~~~~~~~~~~~ 129 (272)
..++..+|+++
T Consensus 233 ~~~~~~~~~~~ 243 (243)
T cd04731 233 IAELKEYLAER 243 (243)
T ss_pred HHHHHHHHhhC
Confidence 24556666543
No 226
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=22.13 E-value=1.8e+02 Score=24.05 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCcc
Q 024086 33 PEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKI 82 (272)
Q Consensus 33 ~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~i 82 (272)
.+...+.+.+.+++||+. +|.+.--+ .....+.+.++.|.++|.+
T Consensus 67 ~~~~~~~~~~~~~~L~i~-~d~~~~es----~~~~~~~~~i~~L~~~g~~ 111 (212)
T cd00671 67 VEESIKADLETYGRLDVR-FDVWFGES----SYLGLMGKVVELLEELGLL 111 (212)
T ss_pred HHHHHHHHHHHHHHhCCc-Cceecchh----hhhhHHHHHHHHHHHCCCE
Confidence 455567788899999987 58765211 2256788888999999987
No 227
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=21.92 E-value=2.1e+02 Score=27.45 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccce
Q 024086 33 PEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKY 84 (272)
Q Consensus 33 ~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~ 84 (272)
.+...+.+.+.+++|++.+.|.+ |.....++++++..+.|+++|.+=.
T Consensus 100 a~~~~~~f~~d~~~Lni~~~~~~----~rat~hi~~ii~~i~~L~~kG~aY~ 147 (490)
T PRK14536 100 AAHYTAAFFRDTARLNIERPSIV----CNATEHIQDMIALIKRLEARGHTYC 147 (490)
T ss_pred HHHHHHHHHHHHHHcCCCCCcee----cCcccHHHHHHHHHHHHHHCCCEEE
Confidence 45566678888999999887765 3334668899999999999998753
No 228
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=21.90 E-value=1.3e+02 Score=28.38 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecC
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLS 88 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS 88 (272)
.-+.+.....+.++|++||+++ |-++. .....+..-+++++|+++|++ |...+
T Consensus 47 ~Rs~~~~~~~I~e~L~wLGI~~-De~y~----QSer~~~y~~~~e~L~e~G~A-Y~C~C 99 (445)
T PRK12558 47 ERSKQEYADAIAEDLKWLGINW-DRTFR----QSDRFDRYDEAAEKLKAAGRL-YPCYE 99 (445)
T ss_pred ccchHHHHHHHHHHHHHcCCCC-Ccccc----HHHHHHHHHHHHHHHHHCCCE-EEecC
Confidence 4467899999999999999974 74321 112234567888899999985 44443
No 229
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=21.89 E-value=5.2e+02 Score=22.30 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHhcCCCcceee
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q 108 (272)
.++.+...+-++. |.++|++.|.+-. |.. ..+..++.+.+.+.++ .+..+....+.+.++.+.+. .++.+-
T Consensus 18 ~~s~~~k~~i~~~-L~~~Gv~~IEvG~---P~~---~~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIEIAKA-LDAFGVDYIELTS---PAA---SPQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVD 89 (262)
T ss_pred CCCHHHHHHHHHH-HHHcCCCEEEEEC---CCC---CHHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEE
Confidence 5667766655555 9999988888763 432 2445556666655454 33345556677888888775 334444
Q ss_pred cccCc--------cccchh------hhHHHHHHHhCCceeec
Q 024086 109 MEWSL--------LTRDIE------EEIIPLCRELGIGIVPY 136 (272)
Q Consensus 109 ~~~n~--------~~~~~~------~~~~~~~~~~gv~vi~~ 136 (272)
+.+.. +....+ .+.+.+++.+|+.|...
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 43211 111111 45678888888776554
No 230
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=21.72 E-value=1.4e+02 Score=28.89 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=19.2
Q ss_pred hhhHHHHHHHhCCceeecccccc
Q 024086 119 EEEIIPLCRELGIGIVPYSPLGR 141 (272)
Q Consensus 119 ~~~~~~~~~~~gv~vi~~~~la~ 141 (272)
.+++++.||++||.||.=.++..
T Consensus 162 ~k~lV~~aH~~Gi~VilD~V~NH 184 (542)
T TIGR02402 162 LKALVDAAHGLGLGVILDVVYNH 184 (542)
T ss_pred HHHHHHHHHHCCCEEEEEEccCC
Confidence 37899999999999988766654
No 231
>PF14502 HTH_41: Helix-turn-helix domain
Probab=21.67 E-value=84 Score=19.78 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCH--HHHHHHHHHhCCCC
Q 024086 178 ARVENLAKRNKCTP--AQLSLAWLLRQGDD 205 (272)
Q Consensus 178 ~~l~~la~~~~~s~--~~lal~~~l~~~~v 205 (272)
+.+.+++++++++. .|-||++.-..+.|
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI 36 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAI 36 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcE
Confidence 36788899998874 99999999988843
No 232
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=21.62 E-value=6.2e+02 Score=23.02 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=59.5
Q ss_pred CCCCcEEEEecccccCCCC----c--ccccCCCHHHHHHHHHHHHhhhCCC--ccc-EEEeccCCCCCCHHHHHHHHHHH
Q 024086 6 LPRKKIQLASKFGVVSMAP----T--SVIVKGTPEYVRSCCEASLKRLGVD--YID-LYYQHRVDPSVPIEDTIGELKML 76 (272)
Q Consensus 6 ~~R~~~~IstK~~~~~~~~----~--~~~~~~s~~~i~~~le~SL~~L~~d--~iD-l~~lH~~~~~~~~~e~~~al~~l 76 (272)
..|..++|||-+|..-.+. + +.....+++.|..++......++.. .+. +.++-.=+|....+.+.++++.+
T Consensus 102 ~~~~t~cVSsQ~GC~l~C~fC~t~~~g~~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPLln~d~v~~~l~~l 181 (355)
T TIGR00048 102 KDRATVCVSSQVGCALGCTFCATAKGGFNRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPLLNLNEVVKAMEIM 181 (355)
T ss_pred CCCcEEEEecCCCCCCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchhhCHHHHHHHHHHh
Confidence 3678899999977644331 1 2234678999999887766555422 233 44444344555677889999988
Q ss_pred HH-cCc---cceeecCCCC-HHHHHHHhc
Q 024086 77 VV-EGK---IKYIGLSEAS-PDTIRRAHA 100 (272)
Q Consensus 77 ~~-~G~---ir~iGvS~~~-~~~l~~~~~ 100 (272)
.+ .|. .+.+.+|+.. ...+.++.+
T Consensus 182 ~~~~g~~i~~~~itisT~G~~~~i~~l~~ 210 (355)
T TIGR00048 182 NDDFGLGISKRRITISTSGVVPKIDILAD 210 (355)
T ss_pred hcccccCcCCCeEEEECCCchHHHHHHHH
Confidence 75 552 3578787753 345556655
No 233
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=21.61 E-value=1.9e+02 Score=27.36 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccc
Q 024086 33 PEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIK 83 (272)
Q Consensus 33 ~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir 83 (272)
.+...+.+.+.+++||+...|.+ +......+++.+..++|.++|.+-
T Consensus 90 ~~~~~~~f~~~~~~Lgi~~~d~~----~r~t~~~~~~~~~i~~L~~kG~aY 136 (463)
T PRK00260 90 TERYIAAFHEDMDALNVLPPDIE----PRATEHIPEIIELIERLIDKGHAY 136 (463)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcc----ccccccHHHHHHHHHHHHHCCCEE
Confidence 45566678889999998767753 223346788999999999999974
No 234
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=21.52 E-value=3.6e+02 Score=20.25 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHhhhCCC------cccEEEeccCCCC-CCHHHHHHHHHHH
Q 024086 31 GTPEYVRSCCEASLKRLGVD------YIDLYYQHRVDPS-VPIEDTIGELKML 76 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d------~iDl~~lH~~~~~-~~~~e~~~al~~l 76 (272)
..++.|.+.+.++++.+..+ -.|++++-.+... .+..++.+.|+.+
T Consensus 61 V~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l 113 (118)
T PRK01492 61 VVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKI 113 (118)
T ss_pred hhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHH
Confidence 36889999999999887642 4799999988654 3455666666555
No 235
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=21.50 E-value=2.4e+02 Score=22.11 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcC-CCcceeecccCccccchhhhHHH-HHHHhCC
Q 024086 65 PIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAV-HPITAVQMEWSLLTRDIEEEIIP-LCRELGI 131 (272)
Q Consensus 65 ~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~-~~~~~gv 131 (272)
...++.+.|+.|++.|..-.|.-++.+...+.+.... ..|+.+..........+..+.+. .+++.++
T Consensus 88 ~~pg~~~~L~~L~~~g~~~~i~s~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~ 156 (185)
T TIGR01990 88 VLPGIKNLLDDLKKNNIKIALASASKNAPTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGV 156 (185)
T ss_pred cCccHHHHHHHHHHCCCeEEEEeCCccHHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCC
Confidence 4577889999999999755553333333333233332 23455544443333334444444 4444453
No 236
>PF09639 YjcQ: YjcQ protein; InterPro: IPR018597 YjcQ is a protein of approx. 100 residues containing four alpha helices and three beta strands. It is found in bacteria and also in the Lactococcus phage Tuc2009. In bacteria it appears to be under the regulation of SigD RNA polymerase which is responsible for the expression of many genes encoding cell-surface proteins related to flagellar assembly, motility, chemotaxis and autolysis in the late exponential growth phase. The exact function of YjcQ is unknown []. However, it is thought to be the major head protein in viruses [] and is found in prophage in bacteria. ; PDB: 2HGC_A.
Probab=21.48 E-value=1.3e+02 Score=21.25 Aligned_cols=24 Identities=29% Similarity=0.195 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHcCccceeecCCC
Q 024086 67 EDTIGELKMLVVEGKIKYIGLSEA 90 (272)
Q Consensus 67 ~e~~~al~~l~~~G~ir~iGvS~~ 90 (272)
.....++..|+++|.|.-+-+...
T Consensus 25 ~~~~~il~~L~d~GyI~G~~~~~~ 48 (88)
T PF09639_consen 25 SYWSDILRMLQDEGYIKGVSVVRY 48 (88)
T ss_dssp HHHHHHHHHHHHHTSEE--EESSS
T ss_pred HHHHHHHHHHHHCCCccceEEEec
Confidence 667899999999999987776544
No 237
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=21.24 E-value=2e+02 Score=21.81 Aligned_cols=62 Identities=11% Similarity=0.007 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHH
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRA 98 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~ 98 (272)
+.+.+.|.+.|++.|+..+...-+|-.|..++....-..++++-+++ .+-+-.|+.+.+...
T Consensus 13 ~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~l-------g~pl~~~~~~eL~~~ 74 (126)
T PRK07027 13 GVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARH-------GWPLRAFSAAQLAAS 74 (126)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHh-------CCCeEEeCHHHHHhc
Confidence 45899999999999999999888888888887665545566655555 133344566666554
No 238
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.14 E-value=2.1e+02 Score=20.79 Aligned_cols=30 Identities=23% Similarity=0.138 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 024086 171 GKNKQIYARVENLAKRNKCTPAQLSLAWLL 200 (272)
Q Consensus 171 ~~~~~~~~~l~~la~~~~~s~~~lal~~~l 200 (272)
..+..+...+.++|++.|+++.++.-.+.-
T Consensus 44 ~~N~~R~~~Y~~iA~~ng~t~~~V~~~~a~ 73 (95)
T PF07027_consen 44 AINADRRALYQEIAKKNGITVEQVAATAAQ 73 (95)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 456678889999999999999888766543
No 239
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=21.06 E-value=92 Score=19.14 Aligned_cols=23 Identities=22% Similarity=-0.083 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHH
Q 024086 178 ARVENLAKRNKCTPAQLSLAWLL 200 (272)
Q Consensus 178 ~~l~~la~~~~~s~~~lal~~~l 200 (272)
+.+..+..+.|++..++|-..-+
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~gv 27 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLAGV 27 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCC
Confidence 35666677778888777755433
No 240
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=20.96 E-value=98 Score=26.47 Aligned_cols=50 Identities=8% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHH---HHhCCCCeEeecCCCCHHHHHHhHhc
Q 024086 174 KQIYARVENLAKRNKCTPAQLSLAW---LLRQGDDIVPIPGTTKIKNLDENIGS 224 (272)
Q Consensus 174 ~~~~~~l~~la~~~~~s~~~lal~~---~l~~~~v~~vl~G~~~~~~l~~nl~~ 224 (272)
...+.++..||.-|++++.+++..| ++.+.. ...-+...+++.++..+..
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~-~~~~l~~~~L~~F~~~lq~ 61 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQL-DDTKLTLDNLDQFKQYLQD 61 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT--SC----TTTTTGGGTTTSG
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC-CcCcCCHHHHHHHHHHHHH
Confidence 4678899999999999999999998 444442 2233666677777666643
No 241
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=20.91 E-value=1.5e+02 Score=27.13 Aligned_cols=165 Identities=16% Similarity=0.168 Sum_probs=75.0
Q ss_pred HHHHcCccceeecCCCCHHHHHHHhcCC-CcceeecccCccccchh--------hhHHHHHHHhCCceeecccccccccC
Q 024086 75 MLVVEGKIKYIGLSEASPDTIRRAHAVH-PITAVQMEWSLLTRDIE--------EEIIPLCRELGIGIVPYSPLGRGLLG 145 (272)
Q Consensus 75 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~--------~~~~~~~~~~gv~vi~~~~la~G~L~ 145 (272)
+|-+.|.--.+=.|+.+.+.+..+.+.. .++-+...+|+.-+ +. .+.-.+.++.|+.+.|+-|-..+ ..
T Consensus 106 ~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr-~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~-~r 183 (357)
T PF05913_consen 106 KLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPR-PYTGLSEEFFIEKNQLLKEYGIKTAAFIPGDEN-KR 183 (357)
T ss_dssp HHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-S-TT-SB-HHHHHHHHHHHHHTT-EEEEEE--SSS--B
T ss_pred HHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCC-CCCCCCHHHHHHHHHHHHHCCCcEEEEecCCCc-cc
Confidence 4444466555666777777777777753 56666777777433 22 34566778889999998776532 22
Q ss_pred CCCcCCCCCCCcccccCCCCCCCchhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCCeEeecCCC--CHHHHHHhHh
Q 024086 146 GKAVVESLPANSFLISHPRFTGENLGKNKQIYARVENLAKRNKCTPAQLSLAWLLRQGDDIVPIPGTT--KIKNLDENIG 223 (272)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~s~~~lal~~~l~~~~v~~vl~G~~--~~~~l~~nl~ 223 (272)
|. -.+.+|. .+.|.--+..+|.+..+..+.|.-|++|-. +.+.+++-..
T Consensus 184 GP-l~~GLPT----------------------------lE~hR~~~p~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~ 234 (357)
T PF05913_consen 184 GP-LYEGLPT----------------------------LEKHRNLPPYAAALELFALGLIDDVIIGDPFASEEELKQLAQ 234 (357)
T ss_dssp TT-T-S--BS----------------------------BGGGTTS-HHHHHHHHHHTTT--EEEE-SC---HHHHHHHHH
T ss_pred CC-ccCCCCc----------------------------cHHHcCCCHHHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHH
Confidence 21 0011111 012322234567888888888999999876 4555555554
Q ss_pred ccC-----C------CCCHHHHHHHHhhCCCCcCCCCCCcc--cccchhccccCCCCCCC
Q 024086 224 SLM-----M------KLTKEDMKEILNFVPIEEVAGDRTYG--GMLKVTWKFTNTPPKDC 270 (272)
Q Consensus 224 ~~~-----~------~Lt~e~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 270 (272)
... . .+++.+.+.|....=..|.+.++|.= .+--..|+..+-||.+|
T Consensus 235 ~~~~~~i~L~v~~~~~~~~~~~~~l~~~~h~~R~D~s~~vIRs~~sR~~~~~~~i~p~~~ 294 (357)
T PF05913_consen 235 YFNKDVITLRVKLLEDISEEEKEILLDQIHTNRPDSSEYVIRSTESRVKYKGESIPPQNT 294 (357)
T ss_dssp CHHCSCEEEEEEE-TT--CCHHHHCHSCEEEB-SS-BTTEEEE-THHHHHTTS-------
T ss_pred HhccCeeEEEEEEcCCCCHHHHHHHhcCCceeCCCchhheEEcccccccccCCCcCCcCC
Confidence 421 1 13556666663333344666666642 11122355566666655
No 242
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=20.80 E-value=1.4e+02 Score=25.09 Aligned_cols=35 Identities=23% Similarity=0.067 Sum_probs=23.2
Q ss_pred CcccEEEeccCCCCCCHHHHHHHHHHHHH---cCccceeecCCCC
Q 024086 50 DYIDLYYQHRVDPSVPIEDTIGELKMLVV---EGKIKYIGLSEAS 91 (272)
Q Consensus 50 d~iDl~~lH~~~~~~~~~e~~~al~~l~~---~G~ir~iGvS~~~ 91 (272)
-.+|++|||...+ .+.++++++ -.-++++.++.-.
T Consensus 74 ~~ld~VQlHG~e~-------~~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 74 LGLDAVQLHGDED-------PEYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred cCCCEEEECCCCC-------HHHHHHHHhhcCCceEEEEEeCCcc
Confidence 3479999998733 334444444 4588888887643
No 243
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=20.76 E-value=42 Score=31.04 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=45.5
Q ss_pred cCCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCccceeecCCCCHHHHHHHhcCCCcceee
Q 024086 29 VKGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGKIKYIGLSEASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 29 ~~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 108 (272)
.+++.+.+.+.+++..+. =+|++-+|.-- +.+.++.+++.|+ ..|+-+-...-+..++....
T Consensus 134 ~~~t~d~~~~~ie~qa~~----GVDfmtiH~gi-------t~~~~~~~~~~~R--~~giVSRGGs~l~~WM~~n~----- 195 (420)
T PF01964_consen 134 VDMTEDDFFDVIEKQAKD----GVDFMTIHCGI-------TRETLERLKKSGR--IMGIVSRGGSILAAWMLHNG----- 195 (420)
T ss_dssp GG--HHHHHHHHHHHHHH----T--EEEE-TT---------GGGGGGGT--TS--SS----HHHHHHHHHHHHHT-----
T ss_pred hhCCHHHHHHHHHHHHHc----CCCEEEEccch-------hHHHHHHHhhhcc--ccCccccchHHHHHHHHhcC-----
Confidence 367888888888887764 37888888642 2455667777766 55665555444444422111
Q ss_pred cccCccccchhhhHHHHHHHhCCceeec
Q 024086 109 MEWSLLTRDIEEEIIPLCRELGIGIVPY 136 (272)
Q Consensus 109 ~~~n~~~~~~~~~~~~~~~~~gv~vi~~ 136 (272)
.=|++...+ +++++.|+++++.+---
T Consensus 196 -~ENPly~~f-D~lLeI~k~yDVtLSLG 221 (420)
T PF01964_consen 196 -KENPLYEHF-DRLLEIAKEYDVTLSLG 221 (420)
T ss_dssp -S--HHHHTH-HHHHHHHTTTT-EEEE-
T ss_pred -CcCcHHHhH-HHHHHHHHHhCeeEecc
Confidence 224555443 78999999999987543
No 244
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.54 E-value=6.5e+02 Score=22.85 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=58.9
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCc-cceeecCCCCHHHHHHHhcCCCcceee
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLVVEGK-IKYIGLSEASPDTIRRAHAVHPITAVQ 108 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q 108 (272)
.++.+...+-+ +.|.++|+++|.+- .|.. -+.-++.++.+.+.+. .+..+++....+.++.+.+.. ++.+.
T Consensus 19 ~~s~~~k~~ia-~~L~~~Gv~~IEvG---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g-~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKLAIA-RALDEAGVDELEVG---IPAM---GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARCG-VDAVH 90 (365)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEEe---CCCC---CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCC-cCEEE
Confidence 46666655544 55999999998885 2221 1334666777766643 666677767778888877752 34444
Q ss_pred cccCcc--c------cchh------hhHHHHHHHhCCcee
Q 024086 109 MEWSLL--T------RDIE------EEIIPLCRELGIGIV 134 (272)
Q Consensus 109 ~~~n~~--~------~~~~------~~~~~~~~~~gv~vi 134 (272)
+....- + ...+ .+.+++++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 432221 1 1111 367889999997654
No 245
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=20.45 E-value=4.6e+02 Score=22.39 Aligned_cols=16 Identities=38% Similarity=0.717 Sum_probs=9.0
Q ss_pred hhHHHHHHHhCCceee
Q 024086 120 EEIIPLCRELGIGIVP 135 (272)
Q Consensus 120 ~~~~~~~~~~gv~vi~ 135 (272)
+..++.|++.|...+.
T Consensus 88 ~~~i~~A~~lG~~~v~ 103 (279)
T cd00019 88 KDEIERCEELGIRLLV 103 (279)
T ss_pred HHHHHHHHHcCCCEEE
Confidence 3456666666666544
No 246
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=20.40 E-value=1.9e+02 Score=26.39 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=17.9
Q ss_pred CCHHHHHHHHHHHHhhhCCCcccEEEec
Q 024086 31 GTPEYVRSCCEASLKRLGVDYIDLYYQH 58 (272)
Q Consensus 31 ~s~~~i~~~le~SL~~L~~d~iDl~~lH 58 (272)
-+.+.+.+.++..++ |+.++|.+|.+.
T Consensus 167 qt~~~~~~~l~~~~~-l~~~~is~y~l~ 193 (370)
T PRK06294 167 QSLSDFIVDLHQAIT-LPITHISLYNLT 193 (370)
T ss_pred CCHHHHHHHHHHHHc-cCCCeEEEeeeE
Confidence 366777777766553 677777777665
No 247
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=20.37 E-value=2.8e+02 Score=20.98 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=20.4
Q ss_pred HHHHHHHhhhCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcC
Q 024086 38 SCCEASLKRLGVDYIDLYYQHRVDPS-VPIEDTIGELKMLVVEG 80 (272)
Q Consensus 38 ~~le~SL~~L~~d~iDl~~lH~~~~~-~~~~e~~~al~~l~~~G 80 (272)
..+.+.|+.+....+|.+++...+.- ....+....++.+...|
T Consensus 52 p~l~~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~g 95 (148)
T smart00857 52 PGLQRLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKG 95 (148)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCC
Confidence 34444444444444555555555432 22334555555555554
No 248
>PRK10508 hypothetical protein; Provisional
Probab=20.25 E-value=2.4e+02 Score=25.35 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEeccCCCCCCHHHHHHHHHHHH
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHRVDPSVPIEDTIGELKMLV 77 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~~~~~~e~~~al~~l~ 77 (272)
-.|++.+.+.|++..+++|+|.+ +++.+. .+.++.++.++-|.
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del-~~~~~~----~~~e~~~~S~~lla 327 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEI-MVNGQI----FDHQARLHSFELAM 327 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEE-EEECCC----CCHHHHHHHHHHHH
Confidence 35899999999999999999887 333332 24555555555444
No 249
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=20.21 E-value=1.7e+02 Score=26.89 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEecc
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHR 59 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~ 59 (272)
.-+.+.+++.++..++ |+.++|.+|.+.-
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i 201 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTI 201 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEE
Confidence 4478888999988886 7899999998763
No 250
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.17 E-value=1.7e+02 Score=27.46 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHhhhCCCcccEEEecc
Q 024086 30 KGTPEYVRSCCEASLKRLGVDYIDLYYQHR 59 (272)
Q Consensus 30 ~~s~~~i~~~le~SL~~L~~d~iDl~~lH~ 59 (272)
.-+.+.+++.++..++ |+.++|++|.+.-
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 3477888888777664 8899999988764
No 251
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=20.16 E-value=2e+02 Score=21.34 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=28.2
Q ss_pred HHHHHHHHhhhCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCccceeec
Q 024086 37 RSCCEASLKRLGVDYIDLYYQHRVDPS-VPIEDTIGELKMLVVEGKIKYIGL 87 (272)
Q Consensus 37 ~~~le~SL~~L~~d~iDl~~lH~~~~~-~~~~e~~~al~~l~~~G~ir~iGv 87 (272)
+..+++.|+.+....+|.+++...+.- ....+....++.|...| |+-+-+
T Consensus 51 R~~~~~ll~~~~~~~~d~ivv~~~~Rl~R~~~~~~~~~~~l~~~g-i~l~~~ 101 (137)
T cd00338 51 RPGLQRLLADVKAGKIDVVLVEKLDRLSRNLVDLLELLELLEAHG-VRVVTA 101 (137)
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecchhhCCHHHHHHHHHHHHHCC-CEEEEe
Confidence 445555555555556677777766543 23345666666666554 444444
No 252
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=20.13 E-value=1.9e+02 Score=16.48 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHH
Q 024086 175 QIYARVENLAKRNKCTPAQLS 195 (272)
Q Consensus 175 ~~~~~l~~la~~~~~s~~~la 195 (272)
+..+.+.++|++.|+|..++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 456789999999999987754
No 253
>PRK10060 RNase II stability modulator; Provisional
Probab=20.01 E-value=7.6e+02 Score=24.37 Aligned_cols=102 Identities=12% Similarity=0.239 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhhhCCCcccEEEeccCCC--CCCHHHHHHHHHHHHHcCccceeecCCCCH--HHHHHHhcCCCccee
Q 024086 32 TPEYVRSCCEASLKRLGVDYIDLYYQHRVDP--SVPIEDTIGELKMLVVEGKIKYIGLSEASP--DTIRRAHAVHPITAV 107 (272)
Q Consensus 32 s~~~i~~~le~SL~~L~~d~iDl~~lH~~~~--~~~~~e~~~al~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~ 107 (272)
..+.+...+.+.|++.+++. ..+.|-=... -.+.+.+.+.+.+|++.|- .|++..|.. ..+..+.. .++|.+
T Consensus 505 ~~~~~~~~l~~~l~~~~~~~-~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~--~ialDdfGtg~ssl~~L~~-l~~d~i 580 (663)
T PRK10060 505 ADQTIFTALKQALQELNFEY-CPIDVELTESCLIENEELALSVIQQFSQLGA--QVHLDDFGTGYSSLSQLAR-FPIDAI 580 (663)
T ss_pred CCCcHHHHHHHHHHHHCcCc-ceEEEEECCchhhcCHHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHh-CCCCEE
Confidence 34557777888888887642 3333332221 2345678999999999998 677766642 33333333 345555
Q ss_pred ecccC--------ccccchhhhHHHHHHHhCCceeecc
Q 024086 108 QMEWS--------LLTRDIEEEIIPLCRELGIGIVPYS 137 (272)
Q Consensus 108 q~~~n--------~~~~~~~~~~~~~~~~~gv~vi~~~ 137 (272)
-+.-+ ...+..-+.++..|+..|+.|++=+
T Consensus 581 KiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAeG 618 (663)
T PRK10060 581 KLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEG 618 (663)
T ss_pred EECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEec
Confidence 55432 2223333678999999999999853
Done!