BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024087
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U8S|A Chain A, Crystal Structure Of Putative Glycine Cleavage System
Transcriptional Repressor
pdb|1U8S|B Chain B, Crystal Structure Of Putative Glycine Cleavage System
Transcriptional Repressor
Length = 192
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEI 149
M +H I GTDRPG+ +EV ++ CN++++ I
Sbjct: 1 MSLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRI 39
>pdb|3KRS|A Chain A, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
pdb|3KRS|B Chain B, Structure Of Triosephosphate Isomerase From
Cryptosporidium Parvum At 1.55a Resolution
Length = 271
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 76 CDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSI--EFTGTDRPGLF 130
C+G K K +ID +Q S S V V PT H S+ EF G D PG+F
Sbjct: 34 CNGTKESLKTLIDSFKQ--------VESSNSEVYVFPTSLHISLVKEFFGNDHPGVF 82
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + R + DF KA
Sbjct: 212 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDRFFKDFSKAFE 266
Query: 200 SLSPPGI 206
L GI
Sbjct: 267 KLLENGI 273
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHV-TDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAK 198
L N N E W D + +H+ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW---DSKSGYMHLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAF 263
Query: 199 TSLSPPGI 206
L GI
Sbjct: 264 EKLLENGI 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYIMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLEDGI 271
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLENGI 271
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLEDGI 271
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLEDGI 274
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLEDGI 271
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 208 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 262
Query: 200 SLSPPGI 206
L GI
Sbjct: 263 KLLENGI 269
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 209 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 263
Query: 200 SLSPPGI 206
L GI
Sbjct: 264 KLLENGI 270
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLENGI 271
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 211 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 265
Query: 200 SLSPPGI 206
L GI
Sbjct: 266 KLLEDGI 272
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLEDGI 271
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLEDGI 274
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 211 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 265
Query: 200 SLSPPGI 206
L GI
Sbjct: 266 KLLENGI 272
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 214 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 268
Query: 200 SLSPPGI 206
L GI
Sbjct: 269 KLLENGI 275
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLENGI 271
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 211 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 265
Query: 200 SLSPPGI 206
L GI
Sbjct: 266 KLLENGI 272
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLEDGI 271
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLENGI 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLENGI 271
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLENGI 271
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 210 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 264
Query: 200 SLSPPGI 206
L GI
Sbjct: 265 KLLENGI 271
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 216 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 270
Query: 200 SLSPPGI 206
L GI
Sbjct: 271 KLLENGI 277
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 212 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 266
Query: 200 SLSPPGI 206
L GI
Sbjct: 267 KLLENGI 273
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ TD+S I+DPK LS +KE + + + DF KA
Sbjct: 206 LEKNDANNEQW--DSKSGYMMLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 260
Query: 200 SLSPPGI 206
L GI
Sbjct: 261 KLLENGI 267
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ + TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYLQLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ + TD+S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYLQLPTDYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ T++S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTNYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ T++S I+DPK LS +KE + + + DF KA
Sbjct: 216 LEKNDANNEQW--DSKSGYMMLPTEYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 270
Query: 200 SLSPPGI 206
L GI
Sbjct: 271 KLLENGI 277
>pdb|1AXI|A Chain A, Structural Plasticity At The Hgh:hghbp Interface
Length = 191
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 207 MNRERRLHQIMFDDRDYERVEKAVGRVEDKSS---RPQTCSMLCFME 250
M R RLHQ+ FD Y+ E+A E K S PQT LCF E
Sbjct: 14 MLRAHRLHQLAFD--TYQEFEEAYIPKEQKYSFLQNPQTS--LCFSE 56
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ T++S I+DPK LS +KE + + + DF KA
Sbjct: 215 LEKNDANNEQW--DSKSGYMMLPTNYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 200 SLSPPGI 206
L GI
Sbjct: 270 KLLENGI 276
>pdb|3HHR|A Chain A, Human Growth Hormone And Extracellular Domain Of Its
Receptor: Crystal Structure Of The Complex
Length = 190
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 207 MNRERRLHQIMFDDRDYERVEKAVGRVEDKSS---RPQTCSMLCFME 250
M R RLHQ+ FD Y+ E+A E K S PQT LCF E
Sbjct: 14 MLRAHRLHQLAFD--TYQEFEEAYIPKEQKYSFLQNPQTS--LCFSE 56
>pdb|1HWG|A Chain A, 1:2 Complex Of Human Growth Hormone With Its Soluble
Binding Protein
Length = 191
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 207 MNRERRLHQIMFDDRDYERVEKAVGRVEDKSS---RPQTCSMLCFME 250
M R RLHQ+ FD Y+ E+A E K S PQT LCF E
Sbjct: 14 MLRAHRLHQLAFD--TYQEFEEAYIPKEQKYSFLQNPQTS--LCFSE 56
>pdb|1HWH|A Chain A, 1:1 Complex Of Human Growth Hormone Mutant G120r With Its
Soluble Binding Protein
pdb|1BP3|A Chain A, The Xray Structure Of A Growth Hormone-Prolactin Receptor
Complex
pdb|1A22|A Chain A, Human Growth Hormone Bound To Single Receptor
Length = 191
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 207 MNRERRLHQIMFDDRDYERVEKAVGRVEDKSS---RPQTCSMLCFME 250
M R RLHQ+ FD Y+ E+A E K S PQT LCF E
Sbjct: 14 MLRAHRLHQLAFD--TYQEFEEAYIPKEQKYSFLQNPQTS--LCFSE 56
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKT 199
L N N E W + ++ ++ T +S I+DPK LS +KE + + + DF KA
Sbjct: 213 LEKNDANNEQW--DSKSGYMMLPTXYSL---IQDPKYLSIVKEYANDQDKFFKDFSKAFE 267
Query: 200 SLSPPGI 206
L GI
Sbjct: 268 KLLENGI 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,031,414
Number of Sequences: 62578
Number of extensions: 318472
Number of successful extensions: 927
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 925
Number of HSP's gapped (non-prelim): 71
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)