BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024087
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense
GN=glnD PE=3 SV=1
Length = 933
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PPRV+IDNN TVI+V+ ++ G+L + + L ++ L I A IS+ G +DVF V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903
Query: 74 IDCDGKKIRDKEVIDYIQQRL 94
D G K+ + + I++RL
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPK 175
HT IE G DRPGL ++ L +L + +A+I T+ ++A V +V D G +
Sbjct: 857 HTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYVKD-VFGLKVTHEN 915
Query: 176 RLSTIKELLFNVL 188
+L+ I+E L + L
Sbjct: 916 KLAQIRERLLHAL 928
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPK 175
T + TD GLFS + LA ++V+A I+T N A V V D + G A +
Sbjct: 745 TEVTIFATDHHGLFSRLAGALAAAGADIVDARIFTMTNGMALDVFTVQDAAGGGAFESGD 804
Query: 176 RLSTIKELLFNVLRG 190
+L+ + ++ VL G
Sbjct: 805 KLAKLSVMIEKVLSG 819
>sp|Q87MD6|GLND_VIBPA [Protein-PII] uridylyltransferase OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=glnD PE=3 SV=1
Length = 874
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 6 AKLIRRMNP--PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SS 62
A L+R +P P V+I T + V + ++ + V+ L+ N + A I +S
Sbjct: 668 AHLLRMDDPNKPLVLISKKATRGGTEVFVYTKDQPALFATVVAELDRRNFNVHDAQIMTS 727
Query: 63 DGGWFMDVFNVIDCDGKKI---RDKEVIDYIQQRLET------DASFAPS------LRSS 107
G +D F V+D G+ I R VI ++ LE P+ +++
Sbjct: 728 KDGHVIDTFMVLDQHGEAIDESRHAAVIKHLTHVLEAGRPTKIKTRRTPNKLQHFNVKTK 787
Query: 108 VGVMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH 165
V +PT+ +HT +EF D PGL ++V ADL+ N+ A+I T +RA + +T
Sbjct: 788 VDFLPTKGKKHTLMEFVALDTPGLLAKVGRTFADLNINLHGAKITTIGERAEDLFILTSE 847
Query: 166 STG 168
+ G
Sbjct: 848 AGG 850
>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3
SV=2
Length = 948
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 51/83 (61%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP V+I N+ TVI+V+ +++ G+L ++ VL+D++L I+ A I++ G +D F V
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884
Query: 74 IDCDGKKIRDKEVIDYIQQRLET 96
D G+KI ++ YI RL+
Sbjct: 885 ADLVGQKISNENRRAYITARLKA 907
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T IE DRPGL SE+ AVL+DL ++ +A I T ++ +V D G I + R
Sbjct: 839 TVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVAD-LVGQKISNENR 897
Query: 177 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 207
+ I L V+ G +D + + P GI+
Sbjct: 898 RAYITARLKAVMAGEEDEMRERM---PSGII 925
>sp|Q89VX9|GLND_BRAJA [Protein-PII] uridylyltransferase OS=Bradyrhizobium japonicum
(strain USDA 110) GN=glnD PE=3 SV=2
Length = 929
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
++ +T IE +G DRPGL E+ ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 845 SDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQIN 903
Query: 173 DPKRLSTIKELLFNVLRG 190
P R S IK L +V+ G
Sbjct: 904 APTRQSAIKSALTHVMAG 921
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I+N TVI+V +++ G+L ++ ++ +NL I A++++ G DVF V
Sbjct: 836 PEVTINNQWSDRYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 895
Query: 75 DCDGKKI 81
D G +I
Sbjct: 896 DLLGAQI 902
>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain
MAFF303099) GN=glnD PE=3 SV=1
Length = 933
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLS 178
IE G DRPGL SE+ L+DL ++ +A I T ++ +VTD TG I P R++
Sbjct: 849 IEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYVTD-LTGQKIDSPARIA 907
Query: 179 TIKELLFNVLRGYDDFRKAKT 199
TI+ L L G R K
Sbjct: 908 TIRNRLMATLEGIAPERGGKA 928
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PPR I N +VI+V+ +++ G+L ++ L+D++L I A+I++ G +D F V
Sbjct: 833 PPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892
Query: 74 IDCDGKKIRDKEVIDYIQQRL 94
D G+KI I I+ RL
Sbjct: 893 TDLTGQKIDSPARIATIRNRL 913
>sp|Q1QRM1|GLND_NITHX [Protein-PII] uridylyltransferase OS=Nitrobacter hamburgensis
(strain X14 / DSM 10229) GN=glnD PE=3 SV=1
Length = 931
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
++ HT IE +G DRPGL ++ A ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 846 SDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGERARDVFYVTD-LLGARIT 904
Query: 173 DPKRLSTIKELLFNVL 188
P R + IK L ++L
Sbjct: 905 APTRQAAIKRALIHLL 920
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 11 RMNP----PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGW 66
R+ P P+V+++N TVI+V +++ G+L Q+ ++ +NL I A++++ G
Sbjct: 829 RLRPFVVEPKVIVNNQWSDRHTVIEVSGLDRPGLLFQLTAAISKLNLNIASAHVATFGER 888
Query: 67 FMDVFNVIDCDGKKI 81
DVF V D G +I
Sbjct: 889 ARDVFYVTDLLGARI 903
>sp|A4YKP3|GLND_BRASO [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
ORS278) GN=glnD PE=3 SV=1
Length = 931
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 80 KIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLAD 139
K+R + + R + +F+ S+ +E +T IE +G DRPGL E+ ++
Sbjct: 813 KLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISK 872
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYD 192
L+ N+ +A + T +RA V +VTD G I P R + IK L ++L D
Sbjct: 873 LNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTRQAAIKSALLHLLASED 924
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I+N TVI+V +++ G+L ++ ++ +NL I A++++ G DVF V
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 75 DCDGKKI 81
D G +I
Sbjct: 897 DLLGAQI 903
>sp|A5ETJ9|GLND_BRASB [Protein-PII] uridylyltransferase OS=Bradyrhizobium sp. (strain
BTAi1 / ATCC BAA-1182) GN=glnD PE=3 SV=1
Length = 931
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 80 KIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLAD 139
K+R + + R + +F+ S+ +E +T IE +G DRPGL E+ ++
Sbjct: 813 KLRLPDAVARRTTRGKQHKAFSVEPEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISK 872
Query: 140 LHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
L+ N+ +A + T +RA V +VTD G I P R + IK L ++L
Sbjct: 873 LNLNIASAHVATFGERARDVFYVTD-LLGAQINAPTRQAAIKSALLHLL 920
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I+N TVI+V +++ G+L ++ ++ +NL I A++++ G DVF V
Sbjct: 837 PEVSINNQWSELYTVIEVSGLDRPGLLYELTTAISKLNLNIASAHVATFGERARDVFYVT 896
Query: 75 DCDGKKI 81
D G +I
Sbjct: 897 DLLGAQI 903
>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain
621H) GN=glnD PE=3 SV=1
Length = 949
Score = 54.7 bits (130), Expect = 7e-07, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 2 DDEYAKLIRRMN----PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKK 57
D + RRM PPRVVIDN TVI+V+ ++ G+L V L+ +L I
Sbjct: 839 DASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISS 898
Query: 58 AYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102
A+I++ G +DVF V D G KI D + +++ L + AP
Sbjct: 899 AHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETLLASLTSAP 943
Score = 51.6 bits (122), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
++ HT IE G DRPGL +V + L+ + +A I T+ RA V +V D G I
Sbjct: 865 SDRHTVIEVNGRDRPGLLHDVTSALSSASLQISSAHITTYGMRAVDVFYVRD-LLGMKIT 923
Query: 173 DPKRLSTIKELLFNVL 188
DP RL+ ++E L L
Sbjct: 924 DPVRLARLRETLLASL 939
Score = 44.3 bits (103), Expect = 9e-04, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 5/124 (4%)
Query: 107 SVGVMPTEEHTSIEFT--GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
+V P E E T D PGLFS++ LA ++V+A I T +D A
Sbjct: 744 TVEAYPIPERGVTELTVLCADHPGLFSQIAGALAVSGASIVDARIHTLSDGMALDTFWVQ 803
Query: 165 HSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRLH---QIMFDDR 221
G + ++P +L + L+ L G D RK S R R +H +++ D+
Sbjct: 804 DGEGCSFEEPHQLGRLNHLVEQALSGRLDIRKGIEDASHHSTSRRMRAIHVPPRVVIDNT 863
Query: 222 DYER 225
+R
Sbjct: 864 ASDR 867
>sp|A7N1X9|GLND_VIBHB [Protein-PII] uridylyltransferase OS=Vibrio harveyi (strain ATCC
BAA-1116 / BB120) GN=glnD PE=3 SV=1
Length = 874
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 18/174 (10%)
Query: 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVF 71
+ P V+I T + V S ++ + V+ L+ N + A I +S G+ +D F
Sbjct: 677 SKPLVLISKKATRGGTEVFVYSPDQPALFATVVAELDRRNFNVHDAQIMTSKDGYVLDTF 736
Query: 72 NVIDCDGKKI---RDKEVIDYIQQRLE------TDASFAPS------LRSSVGVMPTE-- 114
V+D GK I R V +I LE P+ +++ V +PT+
Sbjct: 737 MVLDQHGKAIEEGRHSAVTKHITHVLEDGRPTKIKTRRTPNKLQHFNVKTKVDFLPTKSK 796
Query: 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
+ T +EF D PGL ++V ADL N+ A+I T +RA + +T + G
Sbjct: 797 KRTLMEFVALDTPGLLAKVGRTFADLGINLHAAKITTIGERAEDLFILTSEAGG 850
>sp|Q8DBG3|GLND_VIBVU [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain
CMCP6) GN=glnD PE=3 SV=1
Length = 873
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 8 LIRRMNP--PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDG 64
++R NP P V++ T + V + ++H + V+ L+ N + A I SS
Sbjct: 670 ILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSSKD 729
Query: 65 GWFMDVFNVIDCDGKKI---RDKEVIDYIQQRL------ETDASFAP------SLRSSVG 109
G+ +D F V+D G+ I K VI ++ L + P +++ V
Sbjct: 730 GYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLADGRPTKVKTRRTPYKLQHFKVKTKVD 789
Query: 110 VMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST 167
+PT+ + T +E D PGL + A AD+ N+ A+I T +RA + +T +
Sbjct: 790 FLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTSENG 849
Query: 168 GYAIKDPKRLSTIKELLFNV 187
G + + + L ++L+ N+
Sbjct: 850 G-RLSEEQELQLREKLIHNI 868
>sp|Q7MIF8|GLND_VIBVY [Protein-PII] uridylyltransferase OS=Vibrio vulnificus (strain
YJ016) GN=glnD PE=3 SV=1
Length = 873
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 8 LIRRMNP--PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDG 64
++R NP P V++ T + V + ++H + V+ L+ N + A I SS
Sbjct: 670 ILRMDNPEQPLVLMSKKATRGGTEVFVYTKDQHALFATVVAELDRRNFNVHDAQIMSSKD 729
Query: 65 GWFMDVFNVIDCDGKKI---RDKEVIDYIQQRL------ETDASFAP------SLRSSVG 109
G+ +D F V+D G+ I K VI ++ L + P +++ V
Sbjct: 730 GYVLDTFMVLDQHGQAIDVDNHKAVIKHLMHVLTDGRPTKVKTRRTPYKLQHFKVKTKVD 789
Query: 110 VMPTE--EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST 167
+PT+ + T +E D PGL + A AD+ N+ A+I T +RA + +T +
Sbjct: 790 FLPTKSKKRTLMELVALDTPGLLAITGATFADMGFNLHGAKITTIGERAEDLFILTSENG 849
Query: 168 GYAIKDPKRLSTIKELLFNV 187
G + + + L ++L+ N+
Sbjct: 850 G-RLSEEQELQLREKLIHNI 868
>sp|Q3SWE0|GLND_NITWN [Protein-PII] uridylyltransferase OS=Nitrobacter winogradskyi
(strain Nb-255 / ATCC 25391) GN=glnD PE=3 SV=1
Length = 925
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
++ HT IE +G DRPGL ++ ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 844 SDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGARIT 902
Query: 173 DPKRLSTIKELLFNVL 188
P R + IK L ++L
Sbjct: 903 APTRQAAIKRALVHLL 918
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 10 RRMNP----PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGG 65
+R+ P P+V I+N T+I+V +++ G+L Q+ ++ +NL I A++++ G
Sbjct: 826 KRLRPFVVEPKVTINNQWSDRHTMIEVSGLDRPGLLFQLTTAISKLNLNIASAHVATFGE 885
Query: 66 WFMDVFNVIDCDGKKI 81
DVF V D G +I
Sbjct: 886 RARDVFYVTDLLGARI 901
>sp|P62223|GLND_RHOPA [Protein-PII] uridylyltransferase OS=Rhodopseudomonas palustris
(strain ATCC BAA-98 / CGA009) GN=glnD PE=3 SV=1
Length = 929
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIK 172
++ +T IE +G DRPGL ++ ++ L+ N+ +A + T +RA V +VTD G I
Sbjct: 844 SDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGERARDVFYVTD-LLGAQIT 902
Query: 173 DPKRLSTIKELLFNVLRGYDDFRK 196
P R + IK L ++L D K
Sbjct: 903 APTRQAAIKRALVHLLANGDAAEK 926
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%)
Query: 6 AKLIRRMNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGG 65
AKL + P V I+NN TVI+V +++ G+L Q+ ++ +NL I A++++ G
Sbjct: 826 AKLRAFVVEPEVEINNNWSDRYTVIEVSGLDRPGLLYQLTTAISKLNLNIASAHVATFGE 885
Query: 66 WFMDVFNVIDCDGKKI 81
DVF V D G +I
Sbjct: 886 RARDVFYVTDLLGAQI 901
>sp|Q2RNG2|GLND_RHORT [Protein-PII] uridylyltransferase OS=Rhodospirillum rubrum (strain
ATCC 11170 / NCIB 8255) GN=glnD PE=3 SV=1
Length = 936
Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PPRV++DN TVI+++ ++ G L V + L DV + I A +S+ G +D F V
Sbjct: 825 PPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQISSARVSTYGERVVDSFYV 884
Query: 74 IDCDGKKIRDKEVIDYIQQRLE 95
D G KI + + I++ LE
Sbjct: 885 KDVFGMKIVHRAKLAQIREALE 906
Score = 48.1 bits (113), Expect = 6e-05, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 65/159 (40%), Gaps = 24/159 (15%)
Query: 48 LNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVI----DYIQQRLETDASFAPS 103
L VN++ K SDGG +D+F V +G I +E I ++ L D +
Sbjct: 749 LAGVNILDAKITTMSDGG-ALDIFTVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKA 807
Query: 104 LRSSVGVMP------------------TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVV 145
LR +P ++ HT IE G DRPG V L D+ +
Sbjct: 808 LRRQPPRLPERTRHLTVPPRVIVDNQASKTHTVIEINGRDRPGFLYAVTRALTDVAVQIS 867
Query: 146 NAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 184
+A + T+ +R +V D G I +L+ I+E L
Sbjct: 868 SARVSTYGERVVDSFYVKD-VFGMKIVHRAKLAQIREAL 905
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 104 LRSSVGVMPTEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVH 161
L +V V+P E + + D PGLFS++ +A N+++A+I T +D A +
Sbjct: 712 LTVAVEVLPDPERAVSEVLVATDDHPGLFSKIAGAMALAGVNILDAKITTMSDGGALDIF 771
Query: 162 VTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAKTSLSPPGIMNRERRL 213
G+AI+ +R++ + + + +VL G KA PP + R R L
Sbjct: 772 TVQTLEGHAIEKEERIARLAKTVRDVLTGDLPLEKA-LRRQPPRLPERTRHL 822
>sp|Q2N784|GLND_ERYLH [Protein-PII] uridylyltransferase OS=Erythrobacter litoralis
(strain HTCC2594) GN=glnD PE=3 SV=1
Length = 919
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV+ DN+ TVI+V++ ++ +L ++ + L + ++++ A+I++ G D F V
Sbjct: 825 PRVLFDNDASGRFTVIEVNARDRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVT 884
Query: 75 DCDGKKIRDKEVIDYIQQRLETDAS 99
D G KI D+ +D I+Q L AS
Sbjct: 885 DLTGAKITDESRMDTIRQALLDAAS 909
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 75/183 (40%), Gaps = 23/183 (12%)
Query: 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVIDCDGKKIRDKE 85
AT++ V + + G+ ++ ++ I A I ++ GW +D + V D G+ ++
Sbjct: 726 ATLVTVIAADHPGLFYRIAGGIHLAGGNIIDARIHTTRNGWAIDNYLVQDPVGQPFAEER 785
Query: 86 VIDYIQQRLETDASFAPSLRSSVGVMPTEE---------------------HTSIEFTGT 124
+ I+Q + + L + P ++ T IE
Sbjct: 786 QLARIEQAIADAIANRGELVPKLAKRPLKQTRAGAFDVRPRVLFDNDASGRFTVIEVNAR 845
Query: 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELL 184
DR L + + L + V +A I + +RAA +VTD TG I D R+ TI++ L
Sbjct: 846 DRAALLNRLGRALFENQVIVQSAHITAYGERAADTFYVTD-LTGAKITDESRMDTIRQAL 904
Query: 185 FNV 187
+
Sbjct: 905 LDA 907
>sp|Q9KPV0|GLND_VIBCH [Protein-PII] uridylyltransferase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=glnD PE=3
SV=2
Length = 876
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 18/170 (10%)
Query: 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVF 71
+ P V++ T + + + ++ + V+ L+ NL + A I +S G+ +D F
Sbjct: 677 SKPLVLLSKKATRGGTEVFIYTKDQAALFATVVAELDRRNLNVHDAQIMASKDGYVLDTF 736
Query: 72 NVIDCDGKKI---RDKEVIDYIQQRLE------TDASFAP------SLRSSVGVMPTE-- 114
V+D +G+ I R + +I ++ LE A P +++ V +PT+
Sbjct: 737 MVLDQNGQAIEEDRHQALIRHLVHVLEDGRPTTQKARRIPRNLQHFKVKTQVDFLPTKSK 796
Query: 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164
+ T +EF D PGL + V A A+L+ ++ A+I T +RA + +T+
Sbjct: 797 KRTLMEFVALDTPGLLATVGATFAELNLDLHAAKITTIGERAEDLFILTN 846
>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4
/ ATCC BAA-846) GN=glnD PE=3 SV=1
Length = 941
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 49/88 (55%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I N+ TVI+++ +++ G+L +V VL D++L I A I++ G +D F VI
Sbjct: 826 PHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARITTFGEKVIDTFYVI 885
Query: 75 DCDGKKIRDKEVIDYIQQRLETDASFAP 102
D G+KI ++ I RL+ S P
Sbjct: 886 DLVGQKITNENRQGSISVRLKAVMSEQP 913
Score = 37.7 bits (86), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 5/130 (3%)
Query: 78 GKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVL 137
GKK R EVI + + + +F ++ + + T IE DR GL +EV AVL
Sbjct: 801 GKK-RLPEVIATRTKGRKRNKTFTVKPHVTISNSLSNKFTVIEIECLDRIGLLAEVTAVL 859
Query: 138 ADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKA 197
ADL ++ +A I T ++ +V D G I + R +I L V+ D +
Sbjct: 860 ADLSLDIHSARITTFGEKVIDTFYVID-LVGQKITNENRQGSISVRLKAVMSEQPDELRE 918
Query: 198 KTSLSPPGIM 207
+ P GI+
Sbjct: 919 QM---PSGII 925
>sp|A6V1D0|GLND_PSEA7 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
PA7) GN=glnD PE=3 SV=1
Length = 900
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + + I + + ++H + ++ +NL I+ A I+S + +D
Sbjct: 689 PLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDT 748
Query: 71 FNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLRSSV 108
+ V+D DG I + K DY IQ+R+ +FAP + S
Sbjct: 749 YIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIST 808
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
+ + + +E DRPGL + + + D +V NA+I T +R V ++TD +
Sbjct: 809 DAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD-ARN 865
Query: 169 YAIKDP---KRLST 179
+ DP KRL
Sbjct: 866 QPLADPDLCKRLQA 879
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I + +V++V + ++ G+L ++ + D +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
++ A I++ G DVF + D + + D ++ +Q L
Sbjct: 841 SVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
>sp|Q02RD0|GLND_PSEAB [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=glnD PE=3 SV=1
Length = 900
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + + I + + ++H + ++ +NL I+ A I+S + +D
Sbjct: 689 PLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDT 748
Query: 71 FNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLRSSV 108
+ V+D DG I + K DY IQ+R+ +FAP + S
Sbjct: 749 YIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIST 808
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
+ + + +E DRPGL + + + D +V NA+I T +R V ++TD +
Sbjct: 809 DAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD-ARN 865
Query: 169 YAIKDP---KRLST 179
+ DP KRL
Sbjct: 866 QPLADPDLCKRLQA 879
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I + +V++V + ++ G+L ++ + D +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
++ A I++ G DVF + D + + D ++ +Q L
Sbjct: 841 SVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
>sp|B7V7F5|GLND_PSEA8 [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
LESB58) GN=glnD PE=3 SV=1
Length = 900
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + + I + + ++H + ++ +NL I+ A I+S + +D
Sbjct: 689 PLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDT 748
Query: 71 FNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLRSSV 108
+ V+D DG I + K DY IQ+R+ +FAP + S
Sbjct: 749 YIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIST 808
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
+ + + +E DRPGL + + + D +V NA+I T +R V ++TD +
Sbjct: 809 DAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD-ARN 865
Query: 169 YAIKDP---KRLST 179
+ DP KRL
Sbjct: 866 QPLADPDLCKRLQA 879
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I + +V++V + ++ G+L ++ + D +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
++ A I++ G DVF + D + + D ++ +Q L
Sbjct: 841 SVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
>sp|Q9Z9H0|GLND_PSEAE [Protein-PII] uridylyltransferase OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=glnD
PE=3 SV=2
Length = 900
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 32/194 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + + I + + ++H + ++ +NL I+ A I+S + +D
Sbjct: 689 PLVLIKETTQREFESGSQIFIYAADQHDFFAVTVAAMDQLNLSIQDARIITSTSQFTLDT 748
Query: 71 FNVIDCDGKKIRD----------------KEVIDY---IQQRLETDA---SFAPSLRSSV 108
+ V+D DG I + K DY IQ+R+ +FAP + S
Sbjct: 749 YIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVPRQLKHFAFAPQVTIST 808
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
+ + + +E DRPGL + + + D +V NA+I T +R V ++TD +
Sbjct: 809 DAL--RQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITD-ARN 865
Query: 169 YAIKDP---KRLST 179
+ DP KRL
Sbjct: 866 QPLADPDLCKRLQA 879
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I + +V++V + ++ G+L ++ + D +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94
++ A I++ G DVF + D + + D ++ +Q L
Sbjct: 841 SVQNAKIATLGERVEDVFYITDARNQPLADPDLCKRLQAAL 881
>sp|Q3KHB4|GLND_PSEPF [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain Pf0-1) GN=glnD PE=3 SV=1
Length = 900
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 29/200 (14%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + T I + + ++H + ++ +NL I A I+S + +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDT 748
Query: 71 FNVIDCDG----------KKIRD------KEVIDY---IQQRLETDA---SFAPSLRSSV 108
+ V+D DG K+IRD + DY IQ+R+ +FAP + ++
Sbjct: 749 YIVLDTDGDSIGDNPVRVKQIRDGLTEALRNPADYPTIIQRRVPRQLKHFAFAPQV--TI 806
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
T +E T DRPGL + V + + ++ NA+I T +R V +TD +
Sbjct: 807 HNDAQRPVTVLELTAPDRPGLLARVGGIFLEFDLSLQNAKIATLGERVEDVFFITD-AHN 865
Query: 169 YAIKDPKRLSTIKELLFNVL 188
+ DP S +++ + L
Sbjct: 866 QPLSDPLLCSRLQDAIVEQL 885
>sp|A6WV84|GLND_OCHA4 [Protein-PII] uridylyltransferase OS=Ochrobactrum anthropi (strain
ATCC 49188 / DSM 6882 / NCTC 12168) GN=glnD PE=3 SV=1
Length = 934
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T IE G DRPGL SE+ +++DL ++ +A I T ++ +VTD G+ I + R
Sbjct: 847 TVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVTD-LVGHKISNATR 905
Query: 177 LSTIKELLFNVLRG 190
I+ L VL G
Sbjct: 906 QGNIRRKLLGVLSG 919
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV I+N TVI+V+ +++ G+L ++ +++D++L I A+I++ G +D F V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D G KI + I+++L
Sbjct: 894 DLVGHKISNATRQGNIRRKL 913
>sp|Q1I624|GLND_PSEE4 [Protein-PII] uridylyltransferase OS=Pseudomonas entomophila
(strain L48) GN=glnD PE=3 SV=1
Length = 900
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + + +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVGVMP 112
+ V+D DG I D K++ D + + L T + ++ V ++
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRTPEDYPAIIQRRVPRQLKHFDFPPQVTILN 808
Query: 113 TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
+ T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFITD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRG 190
+ DP+ S ++E + L+
Sbjct: 868 LSDPQLCSRLQEAIIQQLQA 887
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 46/79 (58%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+ T++++ + ++ G+L ++ ++ + ++ ++ A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARIGRIFLEFDISLQNAKIATLGERVEDVFFI 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +Q+
Sbjct: 861 TDADNQPLSDPQLCSRLQE 879
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A +A L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMAQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDF 194
P+R+ I++ L LR +D+
Sbjct: 762 NPQRVKQIRDGLTEALRTPEDY 783
>sp|Q5QXT0|GLND_IDILO [Protein-PII] uridylyltransferase OS=Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR) GN=glnD PE=3 SV=1
Length = 879
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 22/193 (11%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNV 73
P ++I + T + + + + V VL+ L I A I ++ G+ MD F V
Sbjct: 687 PLILIGDENNYGTTELFIYHHEEGHLFASVAGVLDSQQLNILDAQILATRDGFVMDTFVV 746
Query: 74 IDCDGKKIRD--------KEVIDYIQQRLETDASFAP--------SLRSSVGVMPTEEH- 116
+ DGK + + ++++D + +R+ ++ P S+ + V +P++ H
Sbjct: 747 LQRDGKPLTEPHRIEEVKQQLLDVLHKRIPVPSTKRPLSRRMKNFSVATEVTFIPSKHHG 806
Query: 117 -TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV-TDHSTGYAIKDP 174
T+ E DRPGL +++ A+L + ++ A+I T ++A + V T+ T + K
Sbjct: 807 RTTFELVTLDRPGLIAKLAAILQQQNVILLAAKITTIGEQAEDLFIVTTEQQTALSDKQK 866
Query: 175 KRLST--IKELLF 185
K L IK+L F
Sbjct: 867 KTLKAKIIKDLEF 879
>sp|P56884|GLND_RHIME [Protein-PII] uridylyltransferase OS=Rhizobium meliloti (strain
1021) GN=glnD PE=3 SV=1
Length = 949
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I N TVI+V+ +++ G+L +V VL+D++L I A+I++ G +D F V
Sbjct: 831 PEVTISNTLSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 75 DCDGKKI 81
D G KI
Sbjct: 891 DLVGSKI 897
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T IE G DR GL SEV AVL+DL ++ +A I T ++ +VTD G I R
Sbjct: 844 TVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD-LVGSKITSENR 902
Query: 177 LSTIKELLFNVLRGYDDFRKAKTSLSPPGIM 207
I L VL G D + + P GI+
Sbjct: 903 QMNIAARLKAVLAGEVDEARERM---PSGII 930
>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv.
viciae GN=glnD PE=3 SV=2
Length = 944
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP V I N+ TVI+V+ +++ G+L ++ VL+D++L I+ A I++ G +D F V
Sbjct: 824 PPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 883
Query: 74 IDCDGKKI 81
D G+KI
Sbjct: 884 TDLVGQKI 891
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKR 176
T IE DRPGL SE+ AVL+DL ++ +A I T ++ +VTD D KR
Sbjct: 838 TVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYVTDLVGQKISGDSKR 897
Query: 177 LSTIKELLFNVLRGYDDFRK---------AKTSLSPPG 205
+ + + D+ R+ A T+ +PP
Sbjct: 898 ANITARMKAVMAEEEDELRERMPSGIIAPAATARTPPA 935
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPK 175
T I D P L + + A N+V+A+I+T +D RA +HV+ T A + +
Sbjct: 727 TEITVLSPDHPRLLAVIAGACAAAGANIVDAQIFTTSDGRALDTIHVSREFTDDA-DELR 785
Query: 176 RLSTIKELLFNVLRGYDDF-----------RKAKTSLSPPGI 206
R +TI ++ +VL G +K+K + PP +
Sbjct: 786 RAATIGRMIEDVLSGRKRLPEVIATRARNRKKSKAFVIPPSV 827
>sp|A4VJR9|GLND_PSEU5 [Protein-PII] uridylyltransferase OS=Pseudomonas stutzeri (strain
A1501) GN=glnD PE=3 SV=1
Length = 900
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+T T++++ + ++ G+L +V Q+ D +L ++ A I++ G DVF V
Sbjct: 801 PPQVTIHNDTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFV 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +QQ
Sbjct: 861 TDADNQPLSDPQLCLRLQQ 879
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 25/211 (11%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARILTSSSQFTLDT 748
Query: 71 FNVIDCDGKKI-----RDKEV--------------IDYIQQRLETDAS-FAPSLRSSVGV 110
+ V++ DG I R +E+ + IQ+R+ FA + ++
Sbjct: 749 YIVLEADGSPIGNNPERIEEIRSGLIAALRNPDDYLTIIQRRVPRQLKHFAFPPQVTIHN 808
Query: 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
T +E DRPGL + V + D +V NA+I T +R V VTD +
Sbjct: 809 DTQRPQTILEIIAPDRPGLLARVGQLFLDFDLSVQNAKIATLGERVEDVFFVTD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRGYDDFRKAKTSL 201
+ DP+ +++ + L+ ++ + + +S+
Sbjct: 868 LSDPQLCLRLQQAIIKELQQENEQQPSPSSI 898
>sp|A6U5G1|GLND_SINMW [Protein-PII] uridylyltransferase OS=Sinorhizobium medicae (strain
WSM419) GN=glnD PE=3 SV=1
Length = 949
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
P V I N TVI+V+ +++ G+L +V VL+D++L I A+I++ G +D F V
Sbjct: 831 PEVTISNALSNKFTVIEVEGLDRTGLLSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVT 890
Query: 75 DCDGKKI 81
D G KI
Sbjct: 891 DLVGSKI 897
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 78 GKKIRD-----KEVIDYIQQRLETDA---SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGL 129
GK I D K++ D I R + +F + ++ + + T IE G DR GL
Sbjct: 797 GKLIEDVLSGRKKLPDVIASRTRSKKRSRAFTVTPEVTISNALSNKFTVIEVEGLDRTGL 856
Query: 130 FSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189
SEV AVL+DL ++ +A I T ++ +VTD G I R I L VL
Sbjct: 857 LSEVTAVLSDLSLDIASAHITTFGEKVIDTFYVTD-LVGSKITSENRQMNIAARLKAVLA 915
Query: 190 GYDDFRKAKTSLSPPGIM 207
G D + + P GI+
Sbjct: 916 GEVDEARERM---PSGII 930
>sp|Q65SZ8|GLND_MANSM [Protein-PII] uridylyltransferase OS=Mannheimia succiniciproducens
(strain MBEL55E) GN=glnD PE=3 SV=1
Length = 875
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 90/184 (48%), Gaps = 18/184 (9%)
Query: 17 VVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVFNVID 75
V I N A T + + ++ + L+V+ + + L I A I +S G+ D F V +
Sbjct: 688 VKISNRFSAGGTEVFIYCKDRPNLFLKVVAAIGNKKLSIHDAQIITSLDGYAFDSFIVTE 747
Query: 76 CDG-------KKIRDKEVIDYIQ-------QRLETDASFAPSLRSSVGVMPTEE--HTSI 119
DG +++ +K +I+ + Q E ++++ V + TE+ HT +
Sbjct: 748 LDGSLLKFDRRRVLEKAIINSLNSNELTKLQGSENHKLQHFNVKTEVRFLNTEKTTHTEM 807
Query: 120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLST 179
E D+ GL ++V V ++L+ ++ NA+I T ++A +T+ + G A+ + +R S
Sbjct: 808 ELFTLDKAGLLADVSLVFSELNLSIQNAKITTIGEKAQDFFILTN-AKGEALSERERQSL 866
Query: 180 IKEL 183
++L
Sbjct: 867 SEKL 870
>sp|Q8UIF1|GLND_AGRT5 [Protein-PII] uridylyltransferase OS=Agrobacterium tumefaciens
(strain C58 / ATCC 33970) GN=glnD PE=3 SV=1
Length = 942
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP V I N TVI+V+ +++ G+L + V+ D++L I A I++ G +D F V
Sbjct: 826 PPSVTISNGLSNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITTFGEKVIDTFYV 885
Query: 74 IDCDGKKIRDKEVIDYIQQRLET 96
D G+K+ + I QRL+
Sbjct: 886 TDLFGQKVTNDNRQASIAQRLKA 908
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 3/102 (2%)
Query: 92 QRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151
+R ++ + PS+ S G+ + + T IE DRPGL +++ AV+ADL ++ +A I T
Sbjct: 817 RRKKSAFTIPPSVTISNGL--SNKFTVIEVECLDRPGLLADMTAVIADLSLDIHSARITT 874
Query: 152 HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDD 193
++ +VTD G + + R ++I + L V+ +D
Sbjct: 875 FGEKVIDTFYVTD-LFGQKVTNDNRQASIAQRLKAVMSEQED 915
>sp|Q6D8E5|GLND_ERWCT [Protein-PII] uridylyltransferase OS=Erwinia carotovora subsp.
atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=glnD
PE=3 SV=1
Length = 904
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 19/189 (10%)
Query: 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDVF 71
N P V+I + T I + S ++ + V L+ NL + A I +S G MD F
Sbjct: 704 NKPLVLISHQASRGGTEIFIWSPDRPYLFAAVAGELDRRNLSVHDAQIFTSRDGMAMDTF 763
Query: 72 NVIDCDGKKIRD--KEVIDYIQQRLETDASF--------APSLR-----SSVGVMPT--E 114
V++ DG + E+I + ++ T + +P LR + V +PT +
Sbjct: 764 IVLEPDGSPLAQDRHEMIRHALEQALTQRHYQHPRVRRTSPKLRHFSVPTEVNFLPTHTD 823
Query: 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDP 174
+ +E + D+PGL + + + +DL+ ++ A I T +R + + D S A+K
Sbjct: 824 RRSYMELSALDQPGLLARIGEIFSDLNLSLHGARISTIGERVEDLFILAD-SDRRALKPE 882
Query: 175 KRLSTIKEL 183
RL + L
Sbjct: 883 LRLKLQERL 891
>sp|A4XWU3|GLND_PSEMY [Protein-PII] uridylyltransferase OS=Pseudomonas mendocina (strain
ymp) GN=glnD PE=3 SV=1
Length = 899
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 29/194 (14%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + T I + + ++H + ++ +NL I A I+S + +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDT 748
Query: 71 FNVIDCDGKKIRDK-------------------EVIDYIQQRLETDA---SFAPSLRSSV 108
+ V+D DG I D E IQ+R+ +FAP + ++
Sbjct: 749 YVVLDADGGSIGDNPARIKQIREGLIEALKNPDEYPTIIQRRVPRQLKHFAFAPQV--TI 806
Query: 109 GVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTG 168
T +E T DRPGL + + + + ++ NA+I T +R V VTD +
Sbjct: 807 HNDAQRPVTILELTAPDRPGLLARIGRIFLEYDLSLQNAKIATLGERVEDVFFVTD-ANN 865
Query: 169 YAIKDPKRLSTIKE 182
+ DP+ + ++E
Sbjct: 866 QPLSDPELCARLQE 879
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
DEY +I+R P P+V I N+ T++++ + ++ G+L ++ ++ + +L
Sbjct: 781 DEYPTIIQRRVPRQLKHFAFAPQVTIHNDAQRPVTILELTAPDRPGLLARIGRIFLEYDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92
++ A I++ G DVF V D + + + D E+ +Q+
Sbjct: 841 SLQNAKIATLGERVEDVFFVTDANNQPLSDPELCARLQE 879
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A ++ L+ N+ +A I T + +V + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSTSQFTLDTYVVLDADGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDF 194
P R+ I+E L L+ D++
Sbjct: 762 NPARIKQIREGLIEALKNPDEY 783
>sp|B1JBR2|GLND_PSEPW [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
W619) GN=glnD PE=3 SV=1
Length = 900
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVGVMP 112
+ V+D DG I D K++ D + + L + ++ V ++
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFNFPPQVTILN 808
Query: 113 TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
+ T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRG 190
+ DP+ S ++E + L+
Sbjct: 868 LSDPQLCSRLQEAIVQQLQA 887
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 46/79 (58%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+ T++++ + ++ G+L ++ ++ + +L ++ A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRAVTILEITAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +Q+
Sbjct: 861 TDADNQPLSDPQLCSRLQE 879
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDF 194
P+R+ I++ L LR +D+
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY 783
>sp|B0KS97|GLND_PSEPG [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
GB-1) GN=glnD PE=3 SV=1
Length = 900
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVGVMP 112
+ V+D DG I D K++ D + + L + ++ V ++
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILN 808
Query: 113 TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
+ T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRG 190
+ DP+ S ++E + L+
Sbjct: 868 LSDPQLCSRLQEAIVQQLQA 887
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 46/79 (58%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+ T++++ + ++ G+L ++ ++ + +L ++ A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +Q+
Sbjct: 861 TDADNQPLSDPQLCSRLQE 879
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDF 194
P+R+ I++ L LR +D+
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY 783
>sp|Q88MI2|GLND_PSEPK [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain
KT2440) GN=glnD PE=3 SV=1
Length = 900
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVGVMP 112
+ V+D DG I D K++ D + + L + ++ V ++
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILN 808
Query: 113 TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
+ T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRG 190
+ DP+ S ++E + L+
Sbjct: 868 LSDPQLCSRLQEAIVQQLQA 887
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 46/79 (58%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+ T++++ + ++ G+L ++ ++ + +L ++ A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +Q+
Sbjct: 861 TDADNQPLSDPQLCSRLQE 879
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDF 194
P+R+ I++ L LR +D+
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY 783
>sp|A5W852|GLND_PSEP1 [Protein-PII] uridylyltransferase OS=Pseudomonas putida (strain F1
/ ATCC 700007) GN=glnD PE=3 SV=1
Length = 900
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWF-MDV 70
P V+I T + T I + + ++H + ++ +NL I A I + F +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRD-----KEVIDYIQQRLETDASFAPSLR-------------SSVGVMP 112
+ V+D DG I D K++ D + + L + ++ V ++
Sbjct: 749 YIVLDNDGGSIGDNPQRVKQIRDGLTEALRNPEDYPTIIQRRVPRQLKHFDFPPQVTILN 808
Query: 113 TEEH--TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYA 170
+ T +E T DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQP 867
Query: 171 IKDPKRLSTIKELLFNVLRG 190
+ DP+ S ++E + L+
Sbjct: 868 LSDPQLCSRLQEAIVQQLQA 887
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 46/79 (58%)
Query: 14 PPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73
PP+V I N+ T++++ + ++ G+L ++ ++ + +L ++ A I++ G DVF +
Sbjct: 801 PPQVTILNDAQRPVTILEITAPDRPGLLARLGRIFLEFDLSLQNAKIATLGERVEDVFFI 860
Query: 74 IDCDGKKIRDKEVIDYIQQ 92
D D + + D ++ +Q+
Sbjct: 861 TDADNQPLSDPQLCSRLQE 879
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A ++ L+ N+ +A I T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMSQLNLNIHDARIITSSSQFTLDTYIVLDNDGGSIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDF 194
P+R+ I++ L LR +D+
Sbjct: 762 NPQRVKQIRDGLTEALRNPEDY 783
>sp|A5VN81|GLND_BRUO2 [Protein-PII] uridylyltransferase OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=glnD PE=3 SV=1
Length = 934
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 158
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 159 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV I+N TVI+V+ +++ G+L ++ +++D++L I A+I++ G +D F V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D G KI + I+++L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2
(strain ATCC 23457) GN=glnD PE=3 SV=1
Length = 934
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV I+N TVI+V+ +++ G+L ++ +++D++L I A+I++ G +D F V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D G KI + I+++L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 158
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 159 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
>sp|B0CIQ3|GLND_BRUSI [Protein-PII] uridylyltransferase OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=glnD PE=3 SV=1
Length = 934
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV I+N TVI+V+ +++ G+L ++ +++D++L I A+I++ G +D F V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D G KI + I+++L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 158
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 159 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1
Length = 934
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 158
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 159 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV I+N TVI+V+ +++ G+L ++ +++D++L I A+I++ G +D F V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D G KI + I+++L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1
(strain 9-941) GN=glnD PE=3 SV=1
Length = 934
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 158
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 159 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV I+N TVI+V+ +++ G+L ++ +++D++L I A+I++ G +D F V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D G KI + I+++L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308)
GN=glnD PE=3 SV=1
Length = 934
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 158
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 159 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV I+N TVI+V+ +++ G+L ++ +++D++L I A+I++ G +D F V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D G KI + I+++L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
>sp|B2S8D8|GLND_BRUA1 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain S19)
GN=glnD PE=3 SV=1
Length = 934
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 158
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 159 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV I+N TVI+V+ +++ G+L ++ +++D++L I A+I++ G +D F V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D G KI + I+++L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain
1330) GN=glnD PE=3 SV=1
Length = 934
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 99 SFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 158
+F R + + + T IE G DRPGL SE+ +++DL ++ +A I T ++
Sbjct: 829 AFKVEPRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVID 888
Query: 159 VVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188
+VTD G+ I + R IK L +L
Sbjct: 889 SFYVTD-LVGHKISNATRQGNIKRKLLALL 917
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74
PRV I+N TVI+V+ +++ G+L ++ +++D++L I A+I++ G +D F V
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893
Query: 75 DCDGKKIRDKEVIDYIQQRL 94
D G KI + I+++L
Sbjct: 894 DLVGHKISNATRQGNIKRKL 913
>sp|C3K5E4|GLND_PSEFS [Protein-PII] uridylyltransferase OS=Pseudomonas fluorescens
(strain SBW25) GN=glnD PE=3 SV=1
Length = 900
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 31/188 (16%)
Query: 15 PRVVIDNNTCAD---ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKA-YISSDGGWFMDV 70
P V+I T + T I + + ++H + ++ +NL I A I+S + +D
Sbjct: 689 PLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDT 748
Query: 71 FNVIDCDGKKIRDKEVI----------------DY---IQQRLETDA---SFAPSLR-SS 107
+ V+D +G+ I D V DY IQ+R+ +FAP + S+
Sbjct: 749 YIVLDTEGESIGDNPVRVKKIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFAPQVTISN 808
Query: 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST 167
P T +E + DRPGL + + + + ++ NA+I T +R V +TD +
Sbjct: 809 DAQRPV---TVLELSAPDRPGLLARIGGIFLEFDLSLQNAKIATLGERVEDVFFITD-AD 864
Query: 168 GYAIKDPK 175
+ DP+
Sbjct: 865 NQPLSDPE 872
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 3 DEYAKLIRRMNP---------PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNL 53
D+Y +I+R P P+V I N+ TV+++ + ++ G+L ++ + + +L
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFAPQVTISNDAQRPVTVLELSAPDRPGLLARIGGIFLEFDL 840
Query: 54 VIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ 91
++ A I++ G DVF + D D + + D E+ +Q
Sbjct: 841 SLQNAKIATLGERVEDVFFITDADNQPLSDPELCRRLQ 878
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKD 173
E T I D+ F+ A + L+ N+ +A + T + + ++ + G +I D
Sbjct: 702 EGGTQIFIYAPDQHDFFAVTVAAMDQLNLNIHDARVITSSSQFTLDTYIVLDTEGESIGD 761
Query: 174 -PKRLSTIKELLFNVLRGYDDF 194
P R+ I+E L LR DD+
Sbjct: 762 NPVRVKKIREGLTEALRNPDDY 783
>sp|B7NIC8|GLND_ECO7I [Protein-PII] uridylyltransferase OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=glnD PE=3 SV=1
Length = 890
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI-SSDGGWFMDV 70
++ P V++ T I + S ++ + V L+ NL + A I ++ G MD
Sbjct: 692 LSKPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTTRDGMAMDT 751
Query: 71 FNVIDCDGKKIRD--KEVIDYIQQRLETDASFAP-------------SLRSSVGVMPT-- 113
F V++ DG + EVI + +++ T +S+ P ++ + V +PT
Sbjct: 752 FIVLEPDGSPLSADRHEVIQFGLEQVLTQSSWQPPQPRRQPAKLRHFTVETEVTFLPTHT 811
Query: 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR 155
+ + +E D+PGL + V + ADL ++ A I T +R
Sbjct: 812 DRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGER 853
>sp|A4TL94|GLND_YERPP [Protein-PII] uridylyltransferase OS=Yersinia pestis (strain
Pestoides F) GN=glnD PE=3 SV=1
Length = 893
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNV 73
P V++ T I + S ++ + V+ L+ NL + A I ++ G MD F V
Sbjct: 697 PLVLVSRQATRGGTEIFIWSPDRPSLFAAVVGELDRRNLSVHDAQIFTNRDGMAMDTFIV 756
Query: 74 IDCDGKKI---RDKEVIDYIQQRL-ETDASFAPSLR------------SSVGVMPT--EE 115
++ DG + R + +QQ + +D P +R + +PT E
Sbjct: 757 LEPDGSPLAQDRHPIISHALQQAINRSDYQHPPRVRRLSPKLRHFSVPTEANFLPTHNER 816
Query: 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR 155
T +E D+PGL + V + ADL ++ +A I T +R
Sbjct: 817 RTYLELIALDQPGLLARVGKIFADLGLSLHSARITTIGER 856
>sp|Q1CFE4|GLND_YERPN [Protein-PII] uridylyltransferase OS=Yersinia pestis bv. Antiqua
(strain Nepal516) GN=glnD PE=3 SV=1
Length = 893
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 19/160 (11%)
Query: 15 PRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNV 73
P V++ T I + S ++ + V+ L+ NL + A I ++ G MD F V
Sbjct: 697 PLVLVSRQATRGGTEIFIWSPDRPSLFAAVVGELDRRNLSVHDAQIFTNRDGMAMDTFIV 756
Query: 74 IDCDGKKI---RDKEVIDYIQQRL-ETDASFAPSLR------------SSVGVMPT--EE 115
++ DG + R + +QQ + +D P +R + +PT E
Sbjct: 757 LEPDGSPLAQDRHPIISHALQQAINRSDYQHPPRVRRLSPKLRHFSVPTEANFLPTHNER 816
Query: 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR 155
T +E D+PGL + V + ADL ++ +A I T +R
Sbjct: 817 RTYLELIALDQPGLLARVGKIFADLGLSLHSARITTIGER 856
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,417,672
Number of Sequences: 539616
Number of extensions: 4085237
Number of successful extensions: 11013
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 10679
Number of HSP's gapped (non-prelim): 415
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)