Query 024087
Match_columns 272
No_of_seqs 267 out of 1647
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024087.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024087hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01759 glnD PII uridylyl-tra 100.0 7.1E-31 1.5E-35 270.9 24.5 175 12-188 662-853 (854)
2 PRK05007 PII uridylyl-transfer 100.0 7.8E-31 1.7E-35 271.4 24.1 176 13-190 687-880 (884)
3 PRK00275 glnD PII uridylyl-tra 100.0 5.2E-28 1.1E-32 250.6 25.0 178 13-191 687-888 (895)
4 TIGR01693 UTase_glnD [Protein- 100.0 1.8E-27 3.9E-32 246.0 23.3 174 13-188 654-849 (850)
5 PRK03381 PII uridylyl-transfer 100.0 1.6E-26 3.5E-31 236.5 23.9 170 12-185 585-773 (774)
6 PRK04374 PII uridylyl-transfer 99.9 2E-26 4.3E-31 237.8 24.2 174 14-189 676-867 (869)
7 PRK05092 PII uridylyl-transfer 99.9 6.6E-26 1.4E-30 236.2 25.5 178 13-191 718-917 (931)
8 PRK03059 PII uridylyl-transfer 99.9 2.1E-25 4.5E-30 230.4 23.8 172 13-189 664-855 (856)
9 COG2844 GlnD UTP:GlnB (protein 99.9 1.7E-25 3.7E-30 223.1 20.9 181 8-190 664-863 (867)
10 cd04895 ACT_ACR_1 ACT domain-c 99.9 1.4E-21 3E-26 143.7 10.2 70 116-186 1-70 (72)
11 cd04897 ACT_ACR_3 ACT domain-c 99.9 1E-21 2.3E-26 145.4 9.5 73 116-189 1-73 (75)
12 cd04896 ACT_ACR-like_3 ACT dom 99.8 6.9E-20 1.5E-24 135.6 9.1 71 117-189 1-73 (75)
13 cd04897 ACT_ACR_3 ACT domain-c 99.7 2.3E-17 4.9E-22 122.2 10.6 71 27-97 1-71 (75)
14 cd04895 ACT_ACR_1 ACT domain-c 99.7 5.2E-17 1.1E-21 119.4 10.8 70 27-96 1-70 (72)
15 cd04925 ACT_ACR_2 ACT domain-c 99.7 7.8E-17 1.7E-21 119.0 10.0 73 117-190 1-74 (74)
16 cd04900 ACT_UUR-like_1 ACT dom 99.7 9.8E-16 2.1E-20 112.6 10.0 71 117-188 2-73 (73)
17 PRK11589 gcvR glycine cleavage 99.6 5.8E-15 1.2E-19 127.9 12.0 134 24-164 5-145 (190)
18 cd04927 ACT_ACR-like_2 Second 99.6 9.5E-15 2.1E-19 108.5 9.6 71 118-190 2-73 (76)
19 cd04900 ACT_UUR-like_1 ACT dom 99.6 2.7E-14 5.9E-19 104.9 10.6 70 27-96 1-71 (73)
20 cd04925 ACT_ACR_2 ACT domain-c 99.6 3.9E-14 8.4E-19 104.6 10.3 69 28-96 1-70 (74)
21 cd04896 ACT_ACR-like_3 ACT dom 99.5 5.1E-14 1.1E-18 104.3 9.9 69 28-97 1-71 (75)
22 cd04927 ACT_ACR-like_2 Second 99.5 1.7E-13 3.7E-18 101.8 10.7 68 29-97 2-70 (76)
23 cd04928 ACT_TyrKc Uncharacteri 99.4 1E-12 2.2E-17 95.6 9.9 65 28-94 2-67 (68)
24 cd04899 ACT_ACR-UUR-like_2 C-t 99.4 3.4E-12 7.4E-17 92.0 9.7 70 117-188 1-70 (70)
25 cd04926 ACT_ACR_4 C-terminal 99.4 4E-12 8.7E-17 93.3 9.9 67 117-185 2-68 (72)
26 cd04926 ACT_ACR_4 C-terminal 99.4 6.7E-12 1.5E-16 92.0 10.6 68 28-96 2-69 (72)
27 PRK00275 glnD PII uridylyl-tra 99.4 4.2E-12 9.1E-17 132.5 13.2 85 13-97 800-884 (895)
28 PRK00227 glnD PII uridylyl-tra 99.4 7.5E-12 1.6E-16 126.8 14.3 143 28-189 547-691 (693)
29 PRK01759 glnD PII uridylyl-tra 99.3 6.3E-12 1.4E-16 130.7 11.5 84 13-97 769-852 (854)
30 PRK05007 PII uridylyl-transfer 99.3 9.3E-12 2E-16 129.8 12.0 84 13-97 794-877 (884)
31 PRK04374 PII uridylyl-transfer 99.3 1.3E-11 2.7E-16 128.4 12.8 84 13-97 782-865 (869)
32 PRK03381 PII uridylyl-transfer 99.3 1.3E-11 2.8E-16 127.1 12.3 81 13-95 693-773 (774)
33 COG2716 GcvR Glycine cleavage 99.3 1.5E-11 3.1E-16 103.6 9.2 153 25-187 3-162 (176)
34 PRK05092 PII uridylyl-transfer 99.3 4.3E-11 9.3E-16 125.6 13.1 85 13-97 829-913 (931)
35 cd04899 ACT_ACR-UUR-like_2 C-t 99.2 1.1E-10 2.4E-15 84.0 10.4 68 28-96 1-68 (70)
36 TIGR01693 UTase_glnD [Protein- 99.2 2.1E-10 4.4E-15 119.5 11.9 83 13-96 765-847 (850)
37 PRK03059 PII uridylyl-transfer 99.2 2.6E-10 5.6E-15 118.7 12.6 82 13-97 772-853 (856)
38 cd04873 ACT_UUR-ACR-like ACT d 99.1 1.5E-09 3.3E-14 77.5 9.6 70 117-188 1-70 (70)
39 COG2844 GlnD UTP:GlnB (protein 99.0 2.1E-09 4.4E-14 108.8 10.0 83 13-96 777-859 (867)
40 cd04873 ACT_UUR-ACR-like ACT d 98.9 1.6E-08 3.4E-13 72.2 10.3 68 28-96 1-68 (70)
41 cd04928 ACT_TyrKc Uncharacteri 98.9 1.6E-08 3.5E-13 73.6 8.6 65 117-188 2-67 (68)
42 PF13740 ACT_6: ACT domain; PD 98.7 7.2E-08 1.6E-12 71.3 8.8 65 116-188 2-66 (76)
43 PF01842 ACT: ACT domain; Int 98.6 2.3E-07 4.9E-12 65.4 8.3 48 117-164 1-50 (66)
44 cd04894 ACT_ACR-like_1 ACT dom 98.6 1.2E-07 2.7E-12 67.0 6.6 66 28-96 1-66 (69)
45 PF13740 ACT_6: ACT domain; PD 98.6 5.7E-07 1.2E-11 66.5 10.0 64 27-97 2-65 (76)
46 PF01842 ACT: ACT domain; Int 98.5 1.2E-06 2.6E-11 61.6 9.6 48 28-75 1-50 (66)
47 COG4747 ACT domain-containing 98.5 7.8E-06 1.7E-10 65.3 13.7 113 28-163 4-117 (142)
48 cd04893 ACT_GcvR_1 ACT domains 98.4 2E-06 4.4E-11 63.7 8.9 48 28-75 2-49 (77)
49 cd04870 ACT_PSP_1 CT domains f 98.4 1.6E-06 3.5E-11 63.7 8.0 47 118-164 1-47 (75)
50 cd04870 ACT_PSP_1 CT domains f 98.2 7.8E-06 1.7E-10 60.0 8.4 50 29-78 1-50 (75)
51 cd04893 ACT_GcvR_1 ACT domains 98.2 6.2E-06 1.3E-10 61.1 7.2 47 117-163 2-48 (77)
52 PF13291 ACT_4: ACT domain; PD 98.2 2.6E-05 5.6E-10 57.7 9.7 64 116-186 6-71 (80)
53 cd04872 ACT_1ZPV ACT domain pr 98.1 1.1E-05 2.5E-10 60.9 7.0 48 117-164 2-49 (88)
54 cd04875 ACT_F4HF-DF N-terminal 98.1 7.3E-06 1.6E-10 59.9 5.4 45 118-164 1-45 (74)
55 PRK00194 hypothetical protein; 98.0 2.1E-05 4.4E-10 59.6 7.4 47 116-162 3-49 (90)
56 PRK11589 gcvR glycine cleavage 98.0 1.5E-05 3.4E-10 69.2 7.1 51 114-164 6-56 (190)
57 cd04869 ACT_GcvR_2 ACT domains 98.0 5E-05 1.1E-09 56.0 8.4 36 118-153 1-36 (81)
58 cd04875 ACT_F4HF-DF N-terminal 98.0 5.3E-05 1.2E-09 55.2 8.4 46 29-74 1-48 (74)
59 PRK00194 hypothetical protein; 98.0 4.2E-05 9E-10 57.9 7.9 48 27-74 3-50 (90)
60 cd04872 ACT_1ZPV ACT domain pr 97.9 3.7E-05 8.1E-10 58.1 7.2 49 28-76 2-50 (88)
61 cd04869 ACT_GcvR_2 ACT domains 97.9 8.7E-05 1.9E-09 54.7 8.9 48 29-76 1-54 (81)
62 PRK13010 purU formyltetrahydro 97.9 0.00057 1.2E-08 63.1 14.8 49 26-74 8-58 (289)
63 cd04894 ACT_ACR-like_1 ACT dom 97.8 6.9E-05 1.5E-09 53.2 6.5 67 117-187 1-67 (69)
64 cd04887 ACT_MalLac-Enz ACT_Mal 97.8 0.00024 5.3E-09 51.3 9.4 62 119-187 2-64 (74)
65 TIGR00655 PurU formyltetrahydr 97.8 0.0012 2.5E-08 60.8 15.6 110 29-145 2-113 (280)
66 cd04877 ACT_TyrR N-terminal AC 97.7 0.00022 4.7E-09 52.1 8.0 60 118-187 2-61 (74)
67 PF13291 ACT_4: ACT domain; PD 97.6 0.00065 1.4E-08 50.1 9.6 65 27-97 6-72 (80)
68 PRK06027 purU formyltetrahydro 97.6 0.0018 3.9E-08 59.7 14.5 49 26-74 5-55 (286)
69 PRK06027 purU formyltetrahydro 97.6 0.00048 1E-08 63.5 9.5 42 114-155 4-47 (286)
70 COG3830 ACT domain-containing 97.5 0.00013 2.9E-09 55.5 4.4 47 116-162 3-49 (90)
71 cd04886 ACT_ThrD-II-like C-ter 97.5 0.00095 2.1E-08 47.0 8.4 34 119-152 1-34 (73)
72 PRK13011 formyltetrahydrofolat 97.5 0.0066 1.4E-07 56.0 15.8 52 27-78 7-60 (286)
73 cd04887 ACT_MalLac-Enz ACT_Mal 97.5 0.0019 4E-08 46.6 9.7 62 30-97 2-64 (74)
74 cd04881 ACT_HSDH-Hom ACT_HSDH_ 97.4 0.0012 2.5E-08 47.3 8.5 63 118-186 2-65 (79)
75 cd04889 ACT_PDH-BS-like C-term 97.4 0.00065 1.4E-08 46.6 6.2 45 119-163 1-46 (56)
76 COG2716 GcvR Glycine cleavage 97.4 0.00022 4.7E-09 60.5 4.4 65 114-186 3-67 (176)
77 cd04878 ACT_AHAS N-terminal AC 97.4 0.0022 4.7E-08 45.0 8.9 62 118-186 2-64 (72)
78 cd04908 ACT_Bt0572_1 N-termina 97.4 0.00088 1.9E-08 47.7 6.9 44 117-162 2-45 (66)
79 PRK06737 acetolactate synthase 97.3 0.0023 4.9E-08 47.6 8.7 66 117-189 3-69 (76)
80 PRK13011 formyltetrahydrofolat 97.3 0.00052 1.1E-08 63.3 6.3 45 116-162 7-51 (286)
81 cd04888 ACT_PheB-BS C-terminal 97.3 0.0025 5.5E-08 45.9 8.6 62 118-186 2-65 (76)
82 cd04909 ACT_PDH-BS C-terminal 97.2 0.0029 6.2E-08 45.0 8.5 47 117-163 2-50 (69)
83 CHL00100 ilvH acetohydroxyacid 97.2 0.002 4.4E-08 55.2 8.2 64 117-188 3-68 (174)
84 cd04879 ACT_3PGDH-like ACT_3PG 97.2 0.0014 3.1E-08 45.8 6.1 44 119-162 2-47 (71)
85 PRK13010 purU formyltetrahydro 97.2 0.0019 4.2E-08 59.6 8.5 35 116-150 9-43 (289)
86 cd04898 ACT_ACR-like_4 ACT dom 97.2 0.00056 1.2E-08 50.3 3.9 72 118-190 2-76 (77)
87 cd04903 ACT_LSD C-terminal ACT 97.1 0.0039 8.5E-08 43.6 8.3 33 119-151 2-34 (71)
88 TIGR00119 acolac_sm acetolacta 97.1 0.0043 9.3E-08 52.4 9.6 66 118-190 3-69 (157)
89 COG3830 ACT domain-containing 97.1 0.00099 2.1E-08 50.8 5.0 48 27-74 3-50 (90)
90 cd04882 ACT_Bt0572_2 C-termina 97.1 0.0021 4.6E-08 44.7 6.5 36 118-153 1-36 (65)
91 COG0788 PurU Formyltetrahydrof 97.1 0.0029 6.3E-08 57.4 8.7 44 26-69 6-51 (287)
92 cd04905 ACT_CM-PDT C-terminal 97.1 0.0055 1.2E-07 45.2 8.7 48 117-164 2-50 (80)
93 PRK11895 ilvH acetolactate syn 97.0 0.0058 1.3E-07 51.8 9.6 67 117-190 3-70 (161)
94 PRK13562 acetolactate synthase 97.0 0.0054 1.2E-07 46.4 8.3 66 118-189 4-70 (84)
95 cd04874 ACT_Af1403 N-terminal 97.0 0.0061 1.3E-07 42.8 8.2 36 118-153 2-37 (72)
96 PRK08577 hypothetical protein; 97.0 0.0085 1.8E-07 49.0 9.8 43 111-153 51-93 (136)
97 cd04877 ACT_TyrR N-terminal AC 97.0 0.007 1.5E-07 44.0 8.4 60 29-97 2-61 (74)
98 cd04886 ACT_ThrD-II-like C-ter 97.0 0.009 2E-07 41.9 8.7 62 30-97 1-67 (73)
99 cd04889 ACT_PDH-BS-like C-term 96.9 0.0045 9.7E-08 42.3 6.3 46 30-75 1-47 (56)
100 cd04879 ACT_3PGDH-like ACT_3PG 96.9 0.0085 1.8E-07 41.7 7.9 44 30-73 2-47 (71)
101 cd04876 ACT_RelA-SpoT ACT dom 96.8 0.011 2.4E-07 40.0 8.2 61 119-185 1-61 (71)
102 TIGR00655 PurU formyltetrahydr 96.8 0.0067 1.5E-07 55.8 9.0 35 118-152 2-36 (280)
103 PRK00227 glnD PII uridylyl-tra 96.8 0.014 3.1E-07 60.0 12.2 68 117-190 547-615 (693)
104 PRK08178 acetolactate synthase 96.8 0.013 2.8E-07 45.5 8.7 67 116-190 8-75 (96)
105 PRK11152 ilvM acetolactate syn 96.6 0.014 3E-07 43.4 7.6 65 117-189 4-69 (76)
106 cd04901 ACT_3PGDH C-terminal A 96.6 0.003 6.5E-08 44.7 4.0 45 30-74 2-46 (69)
107 cd04902 ACT_3PGDH-xct C-termin 96.6 0.011 2.3E-07 42.1 6.8 43 120-162 3-47 (73)
108 cd04908 ACT_Bt0572_1 N-termina 96.6 0.012 2.5E-07 41.8 6.9 45 28-74 2-46 (66)
109 COG0788 PurU Formyltetrahydrof 96.6 0.01 2.2E-07 53.9 7.9 66 115-186 6-73 (287)
110 cd04903 ACT_LSD C-terminal ACT 96.6 0.022 4.8E-07 39.7 8.2 45 30-74 2-48 (71)
111 cd04901 ACT_3PGDH C-terminal A 96.5 0.0028 6E-08 44.9 3.5 40 119-158 2-41 (69)
112 cd04882 ACT_Bt0572_2 C-termina 96.5 0.012 2.6E-07 40.9 6.4 45 29-73 1-47 (65)
113 cd04884 ACT_CBS C-terminal ACT 96.5 0.022 4.9E-07 40.9 8.0 34 119-152 2-35 (72)
114 PRK07334 threonine dehydratase 96.4 0.053 1.2E-06 52.2 12.7 64 116-186 326-394 (403)
115 cd04874 ACT_Af1403 N-terminal 96.4 0.028 6.1E-07 39.3 8.2 46 29-74 2-48 (72)
116 cd04902 ACT_3PGDH-xct C-termin 96.3 0.021 4.5E-07 40.6 7.1 46 30-75 2-49 (73)
117 cd02116 ACT ACT domains are co 96.3 0.018 3.8E-07 37.0 6.2 46 119-164 1-47 (60)
118 PRK04435 hypothetical protein; 96.3 0.045 9.8E-07 45.6 9.7 68 112-186 65-134 (147)
119 cd04888 ACT_PheB-BS C-terminal 96.2 0.051 1.1E-06 39.0 8.8 64 29-97 2-66 (76)
120 cd04909 ACT_PDH-BS C-terminal 96.2 0.056 1.2E-06 38.2 8.8 36 28-63 2-37 (69)
121 cd04881 ACT_HSDH-Hom ACT_HSDH_ 96.1 0.023 4.9E-07 40.4 6.5 62 29-96 2-65 (79)
122 cd02116 ACT ACT domains are co 96.1 0.039 8.5E-07 35.3 7.0 45 30-74 1-46 (60)
123 cd04878 ACT_AHAS N-terminal AC 96.0 0.041 9E-07 38.3 7.4 45 30-74 3-49 (72)
124 PF13710 ACT_5: ACT domain; PD 96.0 0.033 7.1E-07 39.7 6.7 57 125-189 1-59 (63)
125 cd04883 ACT_AcuB C-terminal AC 96.0 0.036 7.8E-07 39.4 6.8 34 117-150 2-35 (72)
126 PRK13562 acetolactate synthase 96.0 0.09 1.9E-06 39.8 9.0 63 29-97 4-68 (84)
127 cd04876 ACT_RelA-SpoT ACT dom 95.8 0.13 2.7E-06 34.6 8.9 61 30-96 1-62 (71)
128 PRK08577 hypothetical protein; 95.8 0.17 3.7E-06 41.3 11.1 77 16-97 43-123 (136)
129 cd04880 ACT_AAAH-PDT-like ACT 95.8 0.06 1.3E-06 39.0 7.5 45 120-164 3-48 (75)
130 PRK06635 aspartate kinase; Rev 95.6 0.29 6.2E-06 46.9 13.6 109 26-147 261-374 (404)
131 PRK11092 bifunctional (p)ppGpp 95.6 0.065 1.4E-06 55.3 9.3 65 115-186 625-690 (702)
132 cd04904 ACT_AAAH ACT domain of 95.6 0.064 1.4E-06 39.1 6.8 47 118-164 2-49 (74)
133 cd04931 ACT_PAH ACT domain of 95.5 0.09 1.9E-06 40.2 7.8 69 116-189 14-83 (90)
134 PRK10872 relA (p)ppGpp synthet 95.4 0.09 1.9E-06 54.5 9.8 66 115-187 665-732 (743)
135 TIGR00656 asp_kin_monofn aspar 95.4 0.41 9E-06 45.8 13.8 107 25-146 258-370 (401)
136 cd04884 ACT_CBS C-terminal ACT 95.3 0.15 3.3E-06 36.5 8.1 61 30-96 2-65 (72)
137 PRK08178 acetolactate synthase 95.3 0.52 1.1E-05 36.6 11.3 64 26-97 7-72 (96)
138 TIGR00119 acolac_sm acetolacta 95.1 0.25 5.4E-06 41.7 10.0 105 29-147 3-114 (157)
139 cd04883 ACT_AcuB C-terminal AC 95.1 0.16 3.4E-06 36.0 7.6 47 28-74 2-50 (72)
140 cd04905 ACT_CM-PDT C-terminal 95.1 0.29 6.3E-06 35.9 9.1 46 28-74 2-49 (80)
141 PRK04435 hypothetical protein; 95.1 0.29 6.3E-06 40.7 10.1 74 19-97 61-135 (147)
142 TIGR00691 spoT_relA (p)ppGpp s 95.1 0.12 2.6E-06 53.3 9.3 66 115-187 609-675 (683)
143 PRK08210 aspartate kinase I; R 94.9 0.76 1.7E-05 44.1 14.0 100 25-146 269-372 (403)
144 cd04929 ACT_TPH ACT domain of 94.9 0.094 2E-06 38.6 6.0 47 118-164 2-49 (74)
145 PRK06737 acetolactate synthase 94.8 0.37 8E-06 35.8 8.9 61 29-96 4-66 (76)
146 CHL00100 ilvH acetohydroxyacid 94.8 0.11 2.3E-06 44.7 6.9 35 28-62 3-37 (174)
147 PRK11895 ilvH acetolactate syn 94.7 0.36 7.7E-06 40.9 9.9 105 29-147 4-115 (161)
148 PRK11899 prephenate dehydratas 94.7 0.17 3.8E-06 46.5 8.5 57 116-175 194-251 (279)
149 COG0317 SpoT Guanosine polypho 94.6 0.17 3.7E-06 52.0 8.9 68 113-186 624-691 (701)
150 PRK07334 threonine dehydratase 94.4 0.3 6.6E-06 47.0 9.9 64 28-97 327-395 (403)
151 PRK06291 aspartate kinase; Pro 94.3 1.2 2.5E-05 43.9 13.8 109 25-148 319-433 (465)
152 TIGR00719 sda_beta L-serine de 94.2 0.24 5.2E-06 43.5 8.1 44 111-154 143-186 (208)
153 cd04885 ACT_ThrD-I Tandem C-te 94.1 0.34 7.5E-06 34.4 7.3 59 120-185 2-60 (68)
154 PRK10872 relA (p)ppGpp synthet 94.0 0.46 9.9E-06 49.4 10.8 65 27-97 666-732 (743)
155 COG4747 ACT domain-containing 93.8 0.8 1.7E-05 36.9 9.5 59 28-97 70-129 (142)
156 PRK11152 ilvM acetolactate syn 93.8 0.54 1.2E-05 34.9 8.0 61 28-96 4-66 (76)
157 COG1707 ACT domain-containing 93.7 0.25 5.3E-06 42.2 6.6 45 29-73 4-50 (218)
158 PRK11092 bifunctional (p)ppGpp 93.4 0.66 1.4E-05 48.0 10.7 65 27-97 626-691 (702)
159 PRK06382 threonine dehydratase 93.4 0.48 1E-05 45.7 9.2 38 113-150 327-364 (406)
160 cd04930 ACT_TH ACT domain of t 93.4 0.23 5.1E-06 39.7 5.9 49 116-164 41-90 (115)
161 PRK08818 prephenate dehydrogen 93.3 0.23 4.9E-06 47.6 6.6 49 115-164 294-343 (370)
162 COG0077 PheA Prephenate dehydr 93.0 0.53 1.2E-05 43.3 8.4 54 115-170 193-247 (279)
163 cd04880 ACT_AAAH-PDT-like ACT 92.8 1.2 2.5E-05 32.1 8.5 42 30-71 2-45 (75)
164 COG1707 ACT domain-containing 92.8 0.36 7.8E-06 41.2 6.4 47 118-164 4-50 (218)
165 cd04871 ACT_PSP_2 ACT domains 92.8 0.077 1.7E-06 39.9 2.1 32 118-149 1-33 (84)
166 TIGR00691 spoT_relA (p)ppGpp s 92.5 1.2 2.5E-05 46.1 10.9 65 27-97 610-675 (683)
167 PRK09034 aspartate kinase; Rev 92.2 3.1 6.6E-05 40.8 13.1 111 26-151 307-423 (454)
168 cd04885 ACT_ThrD-I Tandem C-te 92.1 0.91 2E-05 32.2 7.0 61 31-97 2-62 (68)
169 PRK11790 D-3-phosphoglycerate 92.0 0.8 1.7E-05 44.4 8.5 61 115-181 337-397 (409)
170 PRK11790 D-3-phosphoglycerate 91.9 0.24 5.2E-06 47.9 4.9 48 26-73 337-384 (409)
171 TIGR00657 asp_kinases aspartat 91.7 7.8 0.00017 37.7 15.2 109 25-148 300-413 (441)
172 PRK09436 thrA bifunctional asp 91.7 3.7 8E-05 43.4 13.7 113 25-148 313-431 (819)
173 PRK10622 pheA bifunctional cho 91.4 1.2 2.5E-05 43.0 9.0 58 115-175 296-354 (386)
174 PLN02551 aspartokinase 91.4 7.2 0.00016 39.1 14.8 112 25-149 364-480 (521)
175 PF13840 ACT_7: ACT domain ; P 91.4 0.31 6.8E-06 34.6 3.9 45 115-164 5-53 (65)
176 PRK06349 homoserine dehydrogen 91.4 0.48 1E-05 46.0 6.4 52 113-164 345-396 (426)
177 TIGR00719 sda_beta L-serine de 91.2 1.2 2.7E-05 39.0 8.2 48 26-73 147-196 (208)
178 COG0317 SpoT Guanosine polypho 90.9 1.6 3.6E-05 45.0 9.9 66 26-97 626-692 (701)
179 PRK09181 aspartate kinase; Val 90.9 7.6 0.00016 38.5 14.3 104 26-148 328-436 (475)
180 cd04906 ACT_ThrD-I_1 First of 90.9 2 4.3E-05 32.0 8.0 30 118-149 3-32 (85)
181 PRK06545 prephenate dehydrogen 90.6 1 2.2E-05 42.6 7.8 52 113-164 287-338 (359)
182 PRK07431 aspartate kinase; Pro 90.5 6.2 0.00013 39.9 13.6 111 25-148 437-554 (587)
183 cd04931 ACT_PAH ACT domain of 90.4 3.8 8.1E-05 31.2 9.2 58 20-79 7-66 (90)
184 PF13710 ACT_5: ACT domain; PD 90.2 1.5 3.3E-05 31.0 6.5 38 36-73 1-40 (63)
185 cd04871 ACT_PSP_2 ACT domains 90.0 0.2 4.3E-06 37.6 1.9 31 29-59 1-32 (84)
186 COG0440 IlvH Acetolactate synt 89.3 1.1 2.3E-05 38.1 5.9 66 118-190 6-72 (163)
187 PF13840 ACT_7: ACT domain ; P 88.9 0.53 1.1E-05 33.4 3.3 36 24-59 3-42 (65)
188 TIGR01127 ilvA_1Cterm threonin 88.8 2.7 6E-05 39.9 9.2 37 114-150 303-339 (380)
189 cd04898 ACT_ACR-like_4 ACT dom 88.3 0.74 1.6E-05 34.0 3.7 47 30-76 3-53 (77)
190 PRK13581 D-3-phosphoglycerate 87.7 1.6 3.5E-05 43.6 7.0 66 113-182 449-514 (526)
191 PRK08198 threonine dehydratase 87.5 4.3 9.3E-05 38.9 9.7 38 113-150 324-361 (404)
192 PRK07431 aspartate kinase; Pro 87.5 8.6 0.00019 38.8 12.2 102 34-148 278-383 (587)
193 PRK09084 aspartate kinase III; 87.4 12 0.00026 36.6 12.8 103 25-141 304-412 (448)
194 cd04904 ACT_AAAH ACT domain of 86.9 3.2 7E-05 30.0 6.6 47 30-78 3-51 (74)
195 cd04922 ACT_AKi-HSDH-ThrA_2 AC 86.4 6.7 0.00014 26.8 7.8 32 118-149 3-37 (66)
196 KOG2663 Acetolactate synthase, 86.4 1.4 3E-05 40.0 5.1 36 116-151 77-112 (309)
197 cd04919 ACT_AK-Hom3_2 ACT doma 86.0 7.3 0.00016 26.7 7.8 34 118-151 3-39 (66)
198 cd04906 ACT_ThrD-I_1 First of 85.8 6.6 0.00014 29.1 7.9 62 29-97 3-65 (85)
199 COG0527 LysC Aspartokinases [A 85.0 19 0.00041 35.4 12.7 108 25-148 305-418 (447)
200 PRK11899 prephenate dehydratas 84.6 7.1 0.00015 36.0 9.1 51 27-79 194-246 (279)
201 PLN02317 arogenate dehydratase 84.6 6 0.00013 38.1 8.9 56 116-174 283-353 (382)
202 TIGR01327 PGDH D-3-phosphoglyc 84.2 2.3 5E-05 42.5 6.1 65 114-182 449-513 (525)
203 PRK06382 threonine dehydratase 84.0 8.1 0.00018 37.2 9.6 67 25-97 328-399 (406)
204 COG2150 Predicted regulator of 83.6 1.3 2.9E-05 37.4 3.5 35 26-60 92-128 (167)
205 COG2150 Predicted regulator of 82.1 2.3 5E-05 36.0 4.3 34 116-149 93-128 (167)
206 PRK06545 prephenate dehydrogen 81.8 5.7 0.00012 37.6 7.5 38 25-62 288-325 (359)
207 cd04929 ACT_TPH ACT domain of 81.5 6.6 0.00014 28.7 6.2 48 30-79 3-52 (74)
208 PRK11898 prephenate dehydratas 81.3 8 0.00017 35.6 8.1 56 116-174 196-253 (283)
209 PRK10820 DNA-binding transcrip 81.2 1.8 4E-05 43.1 4.1 42 118-164 2-43 (520)
210 PRK08961 bifunctional aspartat 81.1 27 0.00059 37.1 13.0 104 25-144 320-429 (861)
211 PRK13581 D-3-phosphoglycerate 80.9 4.7 0.0001 40.3 6.9 61 27-92 452-514 (526)
212 cd04890 ACT_AK-like_1 ACT doma 80.5 13 0.00029 25.2 7.3 37 124-164 11-47 (62)
213 cd04891 ACT_AK-LysC-DapG-like_ 80.5 14 0.00029 24.2 7.2 27 123-149 8-34 (61)
214 cd04868 ACT_AK-like ACT domain 80.1 7.5 0.00016 25.2 5.7 32 118-149 2-36 (60)
215 cd04937 ACT_AKi-DapG-BS_2 ACT 80.0 16 0.00034 25.3 7.6 28 118-145 3-33 (64)
216 PRK08198 threonine dehydratase 79.4 18 0.0004 34.6 10.3 66 26-97 326-396 (404)
217 PRK12483 threonine dehydratase 78.9 75 0.0016 31.9 15.0 128 25-161 343-484 (521)
218 PRK08526 threonine dehydratase 78.9 42 0.0009 32.4 12.5 64 116-185 326-393 (403)
219 PF05088 Bac_GDH: Bacterial NA 78.7 20 0.00044 40.5 11.4 85 13-97 473-564 (1528)
220 cd04930 ACT_TH ACT domain of t 78.6 7.3 0.00016 31.0 6.1 46 27-73 41-88 (115)
221 COG0077 PheA Prephenate dehydr 78.6 12 0.00026 34.6 8.2 54 26-80 193-247 (279)
222 TIGR01327 PGDH D-3-phosphoglyc 78.4 5.3 0.00011 40.0 6.3 61 27-92 451-513 (525)
223 TIGR01270 Trp_5_monoox tryptop 78.4 5.9 0.00013 39.0 6.5 51 114-164 29-81 (464)
224 cd04924 ACT_AK-Arch_2 ACT doma 78.2 18 0.0004 24.4 7.9 34 118-151 3-39 (66)
225 PRK08818 prephenate dehydrogen 77.9 6.1 0.00013 37.9 6.4 48 26-74 294-342 (370)
226 PRK09466 metL bifunctional asp 77.8 47 0.001 35.2 13.3 105 25-147 315-425 (810)
227 KOG2663 Acetolactate synthase, 77.3 3.5 7.5E-05 37.5 4.2 37 26-62 76-112 (309)
228 cd04932 ACT_AKiii-LysC-EC_1 AC 76.7 4.4 9.5E-05 29.6 4.0 31 118-148 3-36 (75)
229 cd04892 ACT_AK-like_2 ACT doma 76.5 19 0.00041 23.7 7.4 32 118-149 2-36 (65)
230 TIGR01268 Phe4hydrox_tetr phen 75.5 14 0.0003 36.3 8.1 53 116-170 16-69 (436)
231 cd04935 ACT_AKiii-DAPDC_1 ACT 75.2 29 0.00062 25.2 8.5 57 123-186 11-67 (75)
232 TIGR01127 ilvA_1Cterm threonin 75.0 24 0.00053 33.4 9.7 65 27-97 305-374 (380)
233 COG3283 TyrR Transcriptional r 74.9 6.9 0.00015 37.8 5.7 59 118-186 2-60 (511)
234 cd04913 ACT_AKii-LysC-BS-like_ 74.8 8.5 0.00018 26.5 5.0 26 123-148 9-34 (75)
235 cd04912 ACT_AKiii-LysC-EC-like 74.5 29 0.00062 24.9 8.1 63 117-186 2-67 (75)
236 COG4492 PheB ACT domain-contai 73.6 5.8 0.00013 32.7 4.2 68 113-186 69-137 (150)
237 cd04916 ACT_AKiii-YclM-BS_2 AC 72.9 26 0.00057 23.7 7.8 34 118-151 3-39 (66)
238 cd04922 ACT_AKi-HSDH-ThrA_2 AC 70.6 27 0.00058 23.6 6.7 35 28-62 2-39 (66)
239 PRK09224 threonine dehydratase 69.5 1.1E+02 0.0024 30.4 13.2 122 26-154 327-460 (504)
240 PRK14633 hypothetical protein; 69.5 60 0.0013 27.0 9.6 89 40-143 6-96 (150)
241 PRK10622 pheA bifunctional cho 67.9 28 0.00061 33.5 8.3 51 27-79 297-349 (386)
242 PRK12483 threonine dehydratase 67.4 87 0.0019 31.5 11.9 46 115-162 344-389 (521)
243 COG0779 Uncharacterized protei 67.4 45 0.00097 28.0 8.4 80 38-130 8-90 (153)
244 cd04921 ACT_AKi-HSDH-ThrA-like 67.1 28 0.00061 24.7 6.5 35 117-151 2-39 (80)
245 PRK06349 homoserine dehydrogen 66.4 30 0.00065 33.6 8.3 51 26-76 347-397 (426)
246 cd04919 ACT_AK-Hom3_2 ACT doma 66.3 37 0.0008 23.0 6.7 35 28-62 2-39 (66)
247 PRK14632 hypothetical protein; 65.5 71 0.0015 27.2 9.5 89 40-143 10-100 (172)
248 PRK08841 aspartate kinase; Val 64.7 94 0.002 29.9 11.3 93 26-147 257-349 (392)
249 PRK14634 hypothetical protein; 64.3 80 0.0017 26.4 9.4 93 38-143 7-102 (155)
250 TIGR02079 THD1 threonine dehyd 64.1 1.4E+02 0.003 28.8 12.4 66 115-186 324-390 (409)
251 PRK00907 hypothetical protein; 63.5 33 0.00071 26.3 6.3 65 27-97 17-85 (92)
252 PRK14646 hypothetical protein; 61.4 96 0.0021 25.9 10.2 93 39-144 8-103 (155)
253 PRK14630 hypothetical protein; 61.4 92 0.002 25.7 9.5 77 36-127 6-85 (143)
254 PRK14647 hypothetical protein; 61.0 99 0.0021 25.9 9.6 89 40-143 10-101 (159)
255 PRK14640 hypothetical protein; 61.0 96 0.0021 25.8 9.4 90 40-144 8-100 (152)
256 PRK14639 hypothetical protein; 60.3 84 0.0018 25.8 8.7 86 44-144 3-91 (140)
257 PRK14636 hypothetical protein; 60.0 1.1E+02 0.0023 26.3 9.6 94 37-143 4-100 (176)
258 PTZ00324 glutamate dehydrogena 59.8 89 0.0019 34.0 10.8 81 12-92 214-299 (1002)
259 PLN02550 threonine dehydratase 59.1 2.2E+02 0.0047 29.2 14.3 127 26-161 416-554 (591)
260 COG3978 Acetolactate synthase 58.9 35 0.00077 25.6 5.5 65 116-189 3-69 (86)
261 PRK00092 ribosome maturation p 58.8 1E+02 0.0023 25.5 9.5 77 40-129 9-88 (154)
262 COG0440 IlvH Acetolactate synt 58.6 42 0.00091 28.5 6.7 34 29-62 6-39 (163)
263 cd07247 SgaA_N_like N-terminal 58.3 49 0.0011 24.6 6.7 51 25-81 60-110 (114)
264 cd04933 ACT_AK1-AT_1 ACT domai 58.2 10 0.00022 28.1 2.6 26 123-148 11-36 (78)
265 PRK09224 threonine dehydratase 58.1 1.6E+02 0.0035 29.3 11.9 47 116-164 328-374 (504)
266 TIGR01124 ilvA_2Cterm threonin 58.1 1.7E+02 0.0038 29.1 12.1 63 116-186 325-387 (499)
267 PRK14646 hypothetical protein; 58.1 1E+02 0.0022 25.8 8.9 89 129-226 9-98 (155)
268 cd04937 ACT_AKi-DapG-BS_2 ACT 57.9 29 0.00063 23.9 4.9 29 28-56 2-33 (64)
269 cd04912 ACT_AKiii-LysC-EC-like 57.9 66 0.0014 22.9 8.0 31 28-58 2-35 (75)
270 cd04868 ACT_AK-like ACT domain 57.7 19 0.00042 23.1 3.8 33 29-61 2-37 (60)
271 cd04923 ACT_AK-LysC-DapG-like_ 56.2 27 0.00059 23.2 4.5 31 118-148 2-35 (63)
272 PRK08639 threonine dehydratase 56.1 2E+02 0.0043 27.8 12.3 66 115-186 335-401 (420)
273 PF04083 Abhydro_lipase: Parti 55.8 38 0.00083 23.9 5.2 34 44-77 1-34 (63)
274 cd04891 ACT_AK-LysC-DapG-like_ 55.3 50 0.0011 21.3 5.6 41 34-74 8-49 (61)
275 cd04892 ACT_AK-like_2 ACT doma 55.1 57 0.0012 21.3 6.2 32 29-60 2-36 (65)
276 PRK14638 hypothetical protein; 54.9 1.2E+02 0.0027 25.1 9.4 90 39-143 9-102 (150)
277 cd04924 ACT_AK-Arch_2 ACT doma 53.6 65 0.0014 21.5 6.7 34 29-62 3-39 (66)
278 cd04918 ACT_AK1-AT_2 ACT domai 53.3 69 0.0015 22.1 6.2 34 118-151 3-38 (65)
279 cd04913 ACT_AKii-LysC-BS-like_ 53.1 47 0.001 22.6 5.4 28 34-61 9-36 (75)
280 cd04936 ACT_AKii-LysC-BS-like_ 52.6 65 0.0014 21.2 7.3 31 118-148 2-35 (63)
281 PF05088 Bac_GDH: Bacterial NA 52.5 4.2E+02 0.009 30.5 21.3 177 14-191 328-568 (1528)
282 PRK00907 hypothetical protein; 50.7 78 0.0017 24.2 6.5 63 116-185 17-83 (92)
283 PRK14644 hypothetical protein; 49.9 1.4E+02 0.0031 24.4 8.4 80 45-143 5-87 (136)
284 cd04932 ACT_AKiii-LysC-EC_1 AC 49.8 96 0.0021 22.4 7.8 32 28-59 2-36 (75)
285 PRK11898 prephenate dehydratas 49.0 92 0.002 28.6 8.0 51 27-79 196-249 (283)
286 PRK14645 hypothetical protein; 48.9 1.6E+02 0.0035 24.6 10.1 94 36-142 7-103 (154)
287 cd04914 ACT_AKi-DapG-BS_1 ACT 48.4 18 0.0004 25.5 2.6 29 119-147 4-33 (67)
288 PRK08526 threonine dehydratase 48.1 1.7E+02 0.0037 28.2 10.0 67 25-97 324-395 (403)
289 COG4492 PheB ACT domain-contai 47.8 47 0.001 27.4 5.1 50 24-73 69-119 (150)
290 COG3978 Acetolactate synthase 47.3 89 0.0019 23.5 6.0 48 27-74 3-52 (86)
291 TIGR00656 asp_kin_monofn aspar 46.5 71 0.0015 30.4 7.1 34 24-57 334-370 (401)
292 PRK14643 hypothetical protein; 46.2 1.8E+02 0.004 24.6 9.3 90 40-144 11-107 (164)
293 cd04920 ACT_AKiii-DAPDC_2 ACT 46.2 96 0.0021 21.3 6.7 27 118-144 2-31 (63)
294 cd07261 Glo_EDI_BRP_like_11 Th 46.0 53 0.0012 24.4 5.1 52 26-81 59-110 (114)
295 cd04916 ACT_AKiii-YclM-BS_2 AC 45.9 89 0.0019 20.9 6.6 34 29-62 3-39 (66)
296 PRK14634 hypothetical protein; 45.6 1.8E+02 0.0038 24.3 8.5 62 128-191 8-69 (155)
297 cd04934 ACT_AK-Hom3_1 CT domai 45.3 19 0.00042 26.0 2.4 53 125-186 13-65 (73)
298 cd04915 ACT_AK-Ectoine_2 ACT d 44.9 58 0.0013 22.8 4.7 31 118-148 4-36 (66)
299 COG2892 Uncharacterized protei 44.7 75 0.0016 23.9 5.3 58 84-141 13-70 (82)
300 PRK14637 hypothetical protein; 44.7 1.8E+02 0.004 24.2 9.4 91 35-141 5-98 (151)
301 PRK14631 hypothetical protein; 44.4 2E+02 0.0044 24.5 9.6 93 39-143 9-119 (174)
302 TIGR02079 THD1 threonine dehyd 43.5 1.7E+02 0.0037 28.2 9.3 68 25-97 323-391 (409)
303 TIGR01124 ilvA_2Cterm threonin 42.4 3E+02 0.0066 27.4 11.0 121 25-153 323-455 (499)
304 cd04921 ACT_AKi-HSDH-ThrA-like 41.8 1.2E+02 0.0027 21.3 6.9 35 28-62 2-39 (80)
305 cd04935 ACT_AKiii-DAPDC_1 ACT 40.7 51 0.0011 23.8 4.0 56 35-96 12-67 (75)
306 PLN02550 threonine dehydratase 40.0 4.1E+02 0.009 27.2 11.6 63 116-186 417-479 (591)
307 PRK14645 hypothetical protein; 39.7 2.2E+02 0.0049 23.7 8.9 62 128-191 10-71 (154)
308 cd04918 ACT_AK1-AT_2 ACT domai 39.4 1.3E+02 0.0027 20.7 6.4 36 29-64 3-40 (65)
309 PRK14636 hypothetical protein; 39.3 2.5E+02 0.0053 24.1 8.8 61 129-191 7-67 (176)
310 PRK10820 DNA-binding transcrip 39.0 53 0.0011 32.8 5.1 37 29-65 2-38 (520)
311 PRK02047 hypothetical protein; 38.9 1.7E+02 0.0037 22.1 6.9 65 27-97 16-84 (91)
312 PF01709 Transcrip_reg: Transc 37.6 1.3E+02 0.0029 26.8 7.0 104 24-150 89-196 (234)
313 cd07247 SgaA_N_like N-terminal 37.5 1.3E+02 0.0028 22.2 6.1 49 116-171 62-110 (114)
314 cd04917 ACT_AKiii-LysC-EC_2 AC 37.5 1.3E+02 0.0028 20.4 7.0 42 118-164 3-48 (64)
315 cd07253 Glo_EDI_BRP_like_2 Thi 36.9 92 0.002 23.0 5.2 50 29-81 70-120 (125)
316 TIGR01268 Phe4hydrox_tetr phen 35.9 1.7E+02 0.0037 28.8 7.9 51 27-79 16-68 (436)
317 PTZ00324 glutamate dehydrogena 35.9 3.9E+02 0.0084 29.3 11.0 44 122-165 239-283 (1002)
318 PRK00341 hypothetical protein; 35.4 2E+02 0.0043 21.8 6.7 63 28-97 18-84 (91)
319 cd08355 Glo_EDI_BRP_like_14 Th 34.7 1.8E+02 0.004 21.7 6.6 50 26-81 68-117 (122)
320 PF13399 LytR_C: LytR cell env 34.4 1.2E+02 0.0025 22.3 5.2 41 121-161 9-49 (90)
321 PRK08639 threonine dehydratase 34.1 2.9E+02 0.0063 26.7 9.2 68 25-97 334-402 (420)
322 cd07241 Glo_EDI_BRP_like_3 Thi 33.9 92 0.002 23.2 4.8 39 41-81 84-122 (125)
323 cd08359 Glo_EDI_BRP_like_22 Th 33.6 1.6E+02 0.0034 21.9 6.0 49 27-81 67-115 (119)
324 PLN02317 arogenate dehydratase 33.0 2.3E+02 0.0049 27.5 8.1 35 27-61 283-317 (382)
325 cd07245 Glo_EDI_BRP_like_9 Thi 32.5 1E+02 0.0022 22.1 4.7 48 27-81 65-112 (114)
326 cd04910 ACT_AK-Ectoine_1 ACT d 31.8 89 0.0019 22.7 4.0 31 117-147 2-35 (71)
327 TIGR01270 Trp_5_monoox tryptop 31.5 84 0.0018 31.1 5.0 37 24-60 28-64 (464)
328 cd07238 Glo_EDI_BRP_like_5 Thi 30.7 1.3E+02 0.0028 22.2 5.1 48 28-81 59-106 (112)
329 PRK06635 aspartate kinase; Rev 30.5 75 0.0016 30.3 4.5 34 25-58 338-374 (404)
330 PRK00341 hypothetical protein; 30.0 2E+02 0.0043 21.8 5.9 33 117-150 18-50 (91)
331 cd07263 Glo_EDI_BRP_like_16 Th 29.5 1.9E+02 0.0041 21.0 5.8 48 27-81 68-115 (119)
332 PRK05925 aspartate kinase; Pro 29.1 5.6E+02 0.012 25.1 13.0 103 26-146 299-404 (440)
333 cd07253 Glo_EDI_BRP_like_2 Thi 29.0 1.3E+02 0.0028 22.2 4.8 42 130-172 79-121 (125)
334 PF09843 DUF2070: Predicted me 28.9 3.6E+02 0.0077 22.8 9.7 79 16-97 64-146 (179)
335 PRK00092 ribosome maturation p 28.5 3.4E+02 0.0073 22.4 7.9 59 129-191 9-67 (154)
336 cd04914 ACT_AKi-DapG-BS_1 ACT 27.8 1.1E+02 0.0024 21.4 3.9 43 29-75 3-46 (67)
337 COG3603 Uncharacterized conser 27.5 1.6E+02 0.0035 23.8 5.1 36 24-59 60-98 (128)
338 PRK06291 aspartate kinase; Pro 27.1 1.9E+02 0.0041 28.4 6.7 36 113-148 318-356 (465)
339 PRK14631 hypothetical protein; 26.8 4E+02 0.0087 22.7 8.8 88 129-226 10-115 (174)
340 PRK08210 aspartate kinase I; R 26.7 94 0.002 29.7 4.4 36 114-149 269-305 (403)
341 PRK03094 hypothetical protein; 26.4 1.6E+02 0.0034 22.1 4.6 19 130-148 10-28 (80)
342 cd04933 ACT_AK1-AT_1 ACT domai 26.2 67 0.0015 23.6 2.6 25 35-59 12-36 (78)
343 cd08349 BLMA_like Bleomycin bi 26.2 2.1E+02 0.0045 20.7 5.5 50 26-81 58-108 (112)
344 COG3603 Uncharacterized conser 25.8 46 0.001 26.9 1.7 45 115-164 62-109 (128)
345 PF12681 Glyoxalase_2: Glyoxal 25.3 2.6E+02 0.0057 20.1 8.4 52 24-81 54-105 (108)
346 PRK14639 hypothetical protein; 25.0 3.9E+02 0.0084 21.9 7.7 55 133-191 3-57 (140)
347 cd07264 Glo_EDI_BRP_like_15 Th 24.7 2.4E+02 0.0052 21.0 5.7 50 26-81 71-120 (125)
348 cd07233 Glyoxalase_I Glyoxalas 24.5 2.7E+02 0.0058 20.5 5.9 48 27-81 71-118 (121)
349 cd07246 Glo_EDI_BRP_like_8 Thi 24.5 2.9E+02 0.0063 20.3 6.1 50 26-81 68-117 (122)
350 cd07265 2_3_CTD_N N-terminal d 24.3 3.1E+02 0.0066 20.5 6.8 51 29-81 64-114 (122)
351 COG2061 ACT-domain-containing 23.2 98 0.0021 26.2 3.3 31 28-58 6-36 (170)
352 PRK14637 hypothetical protein; 22.7 4.5E+02 0.0097 21.8 7.7 60 127-190 8-67 (151)
353 PRK02047 hypothetical protein; 22.5 3.5E+02 0.0075 20.4 6.3 36 116-151 16-51 (91)
354 PRK14638 hypothetical protein; 22.3 4.5E+02 0.0098 21.7 8.5 59 130-191 11-69 (150)
355 PRK14640 hypothetical protein; 21.6 4.7E+02 0.01 21.6 8.5 59 129-191 8-66 (152)
356 PRK09034 aspartate kinase; Rev 21.6 1.2E+02 0.0025 29.8 4.1 48 113-164 305-355 (454)
357 PF00903 Glyoxalase: Glyoxalas 20.6 1.8E+02 0.0038 21.4 4.2 50 119-171 77-126 (128)
358 PF01571 GCV_T: Aminomethyltra 20.1 5.3E+02 0.011 21.6 7.6 100 26-134 6-115 (211)
No 1
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.98 E-value=7.1e-31 Score=270.89 Aligned_cols=175 Identities=25% Similarity=0.380 Sum_probs=149.6
Q ss_pred cCCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH---HHH
Q 024087 12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EVI 87 (272)
Q Consensus 12 ~~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~---~~~ 87 (272)
..+|.|.+++..+.++|+|.|+++||||||++++++|+.+|++|.+|+|+| .+|+++|+|+|++++|.++.++ .+.
T Consensus 662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~~~~~~~l~ 741 (854)
T PRK01759 662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRRRQLE 741 (854)
T ss_pred CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCCHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999998 8999999999999999988542 234
Q ss_pred HHHHHHHhcccCCCC-----------Cccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC
Q 024087 88 DYIQQRLETDASFAP-----------SLRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154 (272)
Q Consensus 88 ~~I~~aL~~~~~~~~-----------~~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~ 154 (272)
+.|+++|........ ..+..|.+ +++..+|+|||.+.||||||++|+++|.++|++|+.|+|+|.|+
T Consensus 742 ~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~ge 821 (854)
T PRK01759 742 QALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGE 821 (854)
T ss_pred HHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCc
Confidence 444555544321111 01223444 77889999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087 155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (272)
Q Consensus 155 rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L 188 (272)
||+|+|||+| .+|.|++++++ +.|+++|..+|
T Consensus 822 rv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l 853 (854)
T PRK01759 822 KAEDFFILTN-QQGQALDEEER-KALKSRLLSNL 853 (854)
T ss_pred eEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHh
Confidence 9999999999 78999998766 99999998776
No 2
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.97 E-value=7.8e-31 Score=271.38 Aligned_cols=176 Identities=22% Similarity=0.337 Sum_probs=151.4
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcH---HHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDK---EVID 88 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~---~~~~ 88 (272)
.+|.|.+++..+.++|+|+|+++||||||++++++|+.+|++|.+|+|+| .+|+++|+|+|++++|.++.++ ++.+
T Consensus 687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~~~~~~~I~~ 766 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRK 766 (884)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCCHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999999998 6789999999999999988542 2445
Q ss_pred HHHHHHhcccCCCC------------Cccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC
Q 024087 89 YIQQRLETDASFAP------------SLRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154 (272)
Q Consensus 89 ~I~~aL~~~~~~~~------------~~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~ 154 (272)
.|+++|.......+ ..+..|.+ +.+..+|+|||.+.|||||||+|+++|.++|++|++|+|+|+|+
T Consensus 767 ~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~ge 846 (884)
T PRK05007 767 ALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGE 846 (884)
T ss_pred HHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCc
Confidence 55555644321110 01223444 77899999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087 155 RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 155 rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
||+|+|||++ .+|.|++ +++++.|+++|..+|..
T Consensus 847 ra~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 847 RVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP 880 (884)
T ss_pred eEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence 9999999999 7899998 77889999999999865
No 3
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.96 E-value=5.2e-28 Score=250.60 Aligned_cols=178 Identities=23% Similarity=0.408 Sum_probs=148.6
Q ss_pred CCCEEEEEeCCC---CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCC-cHHHH
Q 024087 13 NPPRVVIDNNTC---ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIR-DKEVI 87 (272)
Q Consensus 13 ~~p~V~i~n~~~---~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~-~~~~~ 87 (272)
..|.|.+.+... .++++|+|+++||||||+++|++|+.+|+||.+|+|+| .+|+++|+|+|++++|.++. +++.+
T Consensus 687 ~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~ 766 (895)
T PRK00275 687 GGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARI 766 (895)
T ss_pred CCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHH
Confidence 357777887775 58999999999999999999999999999999999986 78999999999999999854 33444
Q ss_pred HHHH----HHHhcccCCCC-------------Cccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEE
Q 024087 88 DYIQ----QRLETDASFAP-------------SLRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 88 ~~I~----~aL~~~~~~~~-------------~~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
++|+ ++|.+...+.. .....|.+ +++..+|.|+|.+.||||||++|+++|+++|+||..|+
T Consensus 767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak 846 (895)
T PRK00275 767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK 846 (895)
T ss_pred HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence 4454 44544322110 01123333 67788999999999999999999999999999999999
Q ss_pred EEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087 149 IWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (272)
Q Consensus 149 i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~ 191 (272)
|+|.|++|.|+|||++ ..|.|+.++++++.|+++|.++|...
T Consensus 847 I~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 847 IATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred EEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999 78999998889999999999999653
No 4
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.96 E-value=1.8e-27 Score=246.04 Aligned_cols=174 Identities=24% Similarity=0.315 Sum_probs=148.6
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-ecCCEEEEEEEEEcCCCCCCCcHHHHH---
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-SDGGWFMDVFNVIDCDGKKIRDKEVID--- 88 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~-T~gg~~~dvF~V~d~~G~~~~~~~~~~--- 88 (272)
..|.|.+.+....++|+|+|+++||||||++++++|+.+|+||.+|+|+ |.+|+++|+|+|++.+|.++.+++..+
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~~i~ 733 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELL 733 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence 4688999987778999999999999999999999999999999999999 589999999999999999887765444
Q ss_pred -HHHHHHhcccCCC--C-------------Cccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087 89 -YIQQRLETDASFA--P-------------SLRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (272)
Q Consensus 89 -~I~~aL~~~~~~~--~-------------~~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~ 150 (272)
.|.++|....... + ..+..|.+ +++..+|+|+|.|.||||||++|+++|.++|++|.+|+|.
T Consensus 734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~ 813 (850)
T TIGR01693 734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT 813 (850)
T ss_pred HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence 4455554432111 0 01123444 7788899999999999999999999999999999999999
Q ss_pred eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087 151 THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (272)
Q Consensus 151 T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L 188 (272)
|.|+++.|+|||++ ..|.|+++ ++++.|+++|.++|
T Consensus 814 t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l 849 (850)
T TIGR01693 814 TFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV 849 (850)
T ss_pred ecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence 99999999999999 78999987 78899999998765
No 5
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=1.6e-26 Score=236.51 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=146.5
Q ss_pred cCCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHH
Q 024087 12 MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQ 91 (272)
Q Consensus 12 ~~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~ 91 (272)
..+|.|.+.+.. .+.++|+|+++||||||++++++|+.+|+||.+|+|+|.+|+++|+|+|.+++|.....+++.+.|+
T Consensus 585 ~~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~ 663 (774)
T PRK03381 585 DGGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLR 663 (774)
T ss_pred cCCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHH
Confidence 367899999988 8999999999999999999999999999999999999999999999999999888655566778888
Q ss_pred HHHhcccCC--C--CC-------------ccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087 92 QRLETDASF--A--PS-------------LRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (272)
Q Consensus 92 ~aL~~~~~~--~--~~-------------~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~ 152 (272)
++|.+.... . .. .+..+.+ +.+..+|+|+|.+.||||||++|+++|+++|+||..|+|.|.
T Consensus 664 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~ 743 (774)
T PRK03381 664 RALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATL 743 (774)
T ss_pred HHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeec
Confidence 888774221 0 00 0112333 556679999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087 153 NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (272)
Q Consensus 153 g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~ 185 (272)
|+++.|+|||+| ..|.+++++ ++.|+++|.
T Consensus 744 g~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~ 773 (774)
T PRK03381 744 GADVVDVFYVTG-AAGGPLADA--RAAVEQAVL 773 (774)
T ss_pred CCeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence 999999999999 789999876 788988875
No 6
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=2e-26 Score=237.84 Aligned_cols=174 Identities=24% Similarity=0.311 Sum_probs=144.7
Q ss_pred CCEEEEEe-CCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCc-HHHHHHH
Q 024087 14 PPRVVIDN-NTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRD-KEVIDYI 90 (272)
Q Consensus 14 ~p~V~i~n-~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~-~~~~~~I 90 (272)
.|.|.+.. ....+.+.|+|+++||||||++++++|+.+|+||.+|+|+| .+|+++|+|+|++++|..... +++.+.|
T Consensus 676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l 755 (869)
T PRK04374 676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAAL 755 (869)
T ss_pred CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHH
Confidence 55666554 67789999999999999999999999999999999999998 899999999999988864211 2356666
Q ss_pred HHHHhcccCCC---C----------Cccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe
Q 024087 91 QQRLETDASFA---P----------SLRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR 155 (272)
Q Consensus 91 ~~aL~~~~~~~---~----------~~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r 155 (272)
+++|.+...+. . ..+.+|.+ +++..+|+|+|.+.||||||++|+++|+++|++|..|+|+|.|++
T Consensus 756 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~ 835 (869)
T PRK04374 756 RQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGER 835 (869)
T ss_pred HHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCE
Confidence 77776642210 0 01223444 677789999999999999999999999999999999999999999
Q ss_pred eEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 156 AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 156 v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
|.|+|||+| ..|.++.++++ +.|+++|..+|.
T Consensus 836 a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 836 AEDQFQITD-EHDRPLSESAR-QALRDALCACLD 867 (869)
T ss_pred EEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence 999999999 78999987766 999999998874
No 7
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.95 E-value=6.6e-26 Score=236.24 Aligned_cols=178 Identities=24% Similarity=0.347 Sum_probs=152.0
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQ 91 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~ 91 (272)
.++.|.+.+....++++|+|+++||||||++++++|+.+|+||.+|+|+| .+|+++|+|+|++++|.+..+++.++.|+
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l~ 797 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARLA 797 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHHH
Confidence 56888899998899999999999999999999999999999999999998 79999999999999998776655555555
Q ss_pred HHHhccc----CCC-------CC--------ccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087 92 QRLETDA----SFA-------PS--------LRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (272)
Q Consensus 92 ~aL~~~~----~~~-------~~--------~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~ 150 (272)
+.|.... .+. .+ ....|.+ +++..+|.|+|.+.||||||++|+++|+++|+||.+|+|.
T Consensus 798 ~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~ 877 (931)
T PRK05092 798 KAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA 877 (931)
T ss_pred HHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE
Confidence 5553322 110 01 0112333 5677899999999999999999999999999999999999
Q ss_pred eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087 151 THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (272)
Q Consensus 151 T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~ 191 (272)
|.|+++.|+|||++ ..|.++.++++++.|++.|..+|.+.
T Consensus 878 T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~ 917 (931)
T PRK05092 878 TYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEG 917 (931)
T ss_pred EcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCc
Confidence 99999999999999 78999999989999999999999763
No 8
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.94 E-value=2.1e-25 Score=230.37 Aligned_cols=172 Identities=19% Similarity=0.338 Sum_probs=141.3
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHH---
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVID--- 88 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~--- 88 (272)
..|.|.+.+....+.+.|+|+++||||||++++++|+.+|+||.+|+|+| .+|+++|+|+|++++|. ..+++..+
T Consensus 664 ~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~-~~~~~~~~~i~ 742 (856)
T PRK03059 664 DTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED-VHYRDIINLVE 742 (856)
T ss_pred CCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC-CChHHHHHHHH
Confidence 46777798888899999999999999999999999999999999999986 79999999999998877 44444444
Q ss_pred -HHHHHHhcccCCCC------C-------ccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087 89 -YIQQRLETDASFAP------S-------LRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (272)
Q Consensus 89 -~I~~aL~~~~~~~~------~-------~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~ 152 (272)
.|+++|.+...+.. + ....|.+ +++..+|.|+|.+.||||||++|+++|+++|+||..|+|+|.
T Consensus 743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~ 822 (856)
T PRK03059 743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTL 822 (856)
T ss_pred HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeec
Confidence 44555554321110 0 1112333 567789999999999999999999999999999999999999
Q ss_pred CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 153 NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 153 g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
|++|.|+|||++ .++.++++++.|++.|.++|.
T Consensus 823 ~~~v~DvF~V~~----~~~~~~~~~~~l~~~L~~~L~ 855 (856)
T PRK03059 823 GERVEDTFLIDG----SGLSDNRLQIQLETELLDALA 855 (856)
T ss_pred CCEEEEEEEEcC----CCCCCHHHHHHHHHHHHHHhc
Confidence 999999999954 335578899999999988775
No 9
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-25 Score=223.08 Aligned_cols=181 Identities=25% Similarity=0.394 Sum_probs=145.1
Q ss_pred HHhc-cCCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHH
Q 024087 8 LIRR-MNPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKE 85 (272)
Q Consensus 8 l~~~-~~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~ 85 (272)
|.+. ...|.|.+.+....+.|+|+|+++|+|.||+.+|+.+...|+||.+|+|+| .+|+++|+|.|.+++|..+....
T Consensus 664 l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~~dr 743 (867)
T COG2844 664 LVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVEEDR 743 (867)
T ss_pred HHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccchhH
Confidence 3444 577999999988889999999999999999999999999999999999997 78999999999999999877432
Q ss_pred ---HHHHHHHHHhcccCCCCC------------ccceeee--CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEE
Q 024087 86 ---VIDYIQQRLETDASFAPS------------LRSSVGV--MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 86 ---~~~~I~~aL~~~~~~~~~------------~~~~v~~--~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
....+.+++......++. ...+|.+ +.+...|+|||.+.||||||++|+++|++++++|++|+
T Consensus 744 ~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~Ak 823 (867)
T COG2844 744 RAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAK 823 (867)
T ss_pred HHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeee
Confidence 223344444333222110 1123444 56778999999999999999999999999999999999
Q ss_pred EEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087 149 IWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 149 i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
|.|.|+||+|+|||++ ..|.+++.+.+ ..+.+.|...|..
T Consensus 824 ItT~GErveD~F~vt~-~~~~~l~~~~~-q~l~~~ll~al~~ 863 (867)
T COG2844 824 ITTFGERVEDVFIVTD-ADGQALNAELR-QSLLQRLLEALLP 863 (867)
T ss_pred eccccccceeEEEEec-cccccCCHHHH-HHHHHHHHHHhcc
Confidence 9999999999999999 78999965444 5555555555543
No 10
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.86 E-value=1.4e-21 Score=143.69 Aligned_cols=70 Identities=27% Similarity=0.368 Sum_probs=67.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
+|+|||.+.||||||++|+++|+++|++|+.|+|.|.|++++|+|||+| ..|.|+.|+++++.|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999999999999999999 789999999999999999864
No 11
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.86 E-value=1e-21 Score=145.35 Aligned_cols=73 Identities=21% Similarity=0.260 Sum_probs=70.5
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
+|+|||.++||||||++|+++|.++|++|..|+|.|+|++|.|+|||+| ..|.|+.++++++.|+++|..+|.
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999999999999999999 799999999999999999998875
No 12
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.82 E-value=6.9e-20 Score=135.64 Aligned_cols=71 Identities=20% Similarity=0.268 Sum_probs=67.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE--eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW--THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~--T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
|+|||.+.|||||||+|+++|.++|++|.+|+|. |.|+|++|+||| + ..|.|+.|+++++.|+++|..+|.
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~ 73 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMV 73 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999 999999999999 7 689999999999999999998775
No 13
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.74 E-value=2.3e-17 Score=122.19 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=67.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
+|+|.|.++||||||++++++|+++|++|.+|+|+|.|+.+.|+|+|++.+|.|+.++...+.|+++|...
T Consensus 1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~a 71 (75)
T cd04897 1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAA 71 (75)
T ss_pred CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999998888998888764
No 14
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.72 E-value=5.2e-17 Score=119.42 Aligned_cols=70 Identities=59% Similarity=0.961 Sum_probs=67.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
+|+|.|.++||||||++++++|.++|++|..|+|+|.|+++.|+|+|++.+|+|+.+++.++.|+++|..
T Consensus 1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~~ 70 (72)
T cd04895 1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLGT 70 (72)
T ss_pred CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999999999999999999999999999899999999875
No 15
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.71 E-value=7.8e-17 Score=119.05 Aligned_cols=73 Identities=66% Similarity=0.996 Sum_probs=68.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCC-CCCCCCHHHHHHHHHHhcccccC
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHST-GYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~-G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
|+|||.++||||||++|+++|+++||||..|++.|.|+++.|+|||+| .. |.|+.+++++++|++.|.++|.+
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~g 74 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLRG 74 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 689999999999999999999999999999999999999999999999 66 88998889999999999988763
No 16
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.65 E-value=9.8e-16 Score=112.64 Aligned_cols=71 Identities=34% Similarity=0.524 Sum_probs=65.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee-CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~-g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L 188 (272)
+.|+|.++||||||++|+++|+.+|+||..|+|.|. ++++.|+|||++ ..|.++.++++++.+++.|.++|
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l 73 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL 73 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence 679999999999999999999999999999999999 589999999999 78999988889999999998764
No 17
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=99.61 E-value=5.8e-15 Score=127.90 Aligned_cols=134 Identities=14% Similarity=0.177 Sum_probs=100.8
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC---C
Q 024087 24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---F 100 (272)
Q Consensus 24 ~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~---~ 100 (272)
...+.+|++.++|||||.+.++++|+++|+||.+++....+|.|.-++.|.. .+ .....|+.+|..... +
T Consensus 5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~---~~----~~~~~le~~L~~l~~~~~L 77 (190)
T PRK11589 5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG---SW----NAITLIESTLPLKGAELDL 77 (190)
T ss_pred cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC---Ch----hHHHHHHHHHHhhhhhcCe
Confidence 4578999999999999999999999999999999999999998887888743 32 245677777765431 1
Q ss_pred CCCccc-eee-eCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC--eeEEEEEEEe
Q 024087 101 APSLRS-SVG-VMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVTD 164 (272)
Q Consensus 101 ~~~~~~-~v~-~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~--rv~dvFyVtd 164 (272)
....++ .-. -......+.++|.|.||||++++||++|+++|+||...+..|++. .....|...-
T Consensus 78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~ 145 (190)
T PRK11589 78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQI 145 (190)
T ss_pred EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEE
Confidence 111111 000 011112489999999999999999999999999999999999985 4455555543
No 18
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=9.5e-15 Score=108.54 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=64.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe-eCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT-HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T-~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
++||.++||||||++|+++|+++|+||..|+|.| .++++.|+|||+| ..|. ..++++++++++.|.++|..
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d-~~~~-~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD-AREL-LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC-CCCC-CCCHHHHHHHHHHHHHHHch
Confidence 6899999999999999999999999999999996 8999999999999 5566 55678889999999888764
No 19
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.57 E-value=2.7e-14 Score=104.92 Aligned_cols=70 Identities=27% Similarity=0.477 Sum_probs=63.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
++.|.|.++||||||++++++|+.+|+||.+|+|+|. +|+++|+|+|++++|.++.+++.+++|++.|..
T Consensus 1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~ 71 (73)
T cd04900 1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED 71 (73)
T ss_pred CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999985 799999999999999988777778888888754
No 20
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.55 E-value=3.9e-14 Score=104.59 Aligned_cols=69 Identities=28% Similarity=0.401 Sum_probs=63.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCC-CCCCCcHHHHHHHHHHHhc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCD-GKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~-G~~~~~~~~~~~I~~aL~~ 96 (272)
|+|.|.++||||||++++++|+++|+||.+|+|+|.+|.++|+|+|++++ |.++.+++.+++|++.|..
T Consensus 1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~ 70 (74)
T cd04925 1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDN 70 (74)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999988 8888787777888887755
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=5.1e-14 Score=104.31 Aligned_cols=69 Identities=29% Similarity=0.473 Sum_probs=64.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE--ecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS--SDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~--T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
|++.|.++||||||++++++|.++|++|..|+|+ |.|..+.|+|+| +.+|.++.+++..+.|+++|...
T Consensus 1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~~L~~~L~~~ 71 (75)
T cd04896 1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQAALCARLREE 71 (75)
T ss_pred CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999 999999999999 88899999988888888888654
No 22
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.51 E-value=1.7e-13 Score=101.79 Aligned_cols=68 Identities=22% Similarity=0.389 Sum_probs=59.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
++.|+++||||||++++++|+++|++|.+|+|+| .+|+++|+|+|++++|. ..+++.++.|+++|...
T Consensus 2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~ 70 (76)
T cd04927 2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAV 70 (76)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999997 89999999999998777 45556667777777553
No 23
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.44 E-value=1e-12 Score=95.56 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=54.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHH
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRL 94 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL 94 (272)
..|.|+++||||||++++++|+.+|+||.+|+|+| .+|+++|+|+|++.+|.. ...+.+.++++|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~--~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE--TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc--hHHHHHHHHHhh
Confidence 57999999999999999999999999999999997 799999999999988863 123444555544
No 24
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.39 E-value=3.4e-12 Score=92.03 Aligned_cols=70 Identities=41% Similarity=0.609 Sum_probs=64.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L 188 (272)
|.|+|.+.||||+|++|+++|+++|++|.++++.|.++.+.++|++++ ..|.|+ +.+++++|++.|.+++
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~~-~~~~~~~i~~~l~~~~ 70 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQPL-DPERQEALRAALGEAL 70 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999999999999999999 778884 5678899999987654
No 25
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.38 E-value=4e-12 Score=93.26 Aligned_cols=67 Identities=34% Similarity=0.495 Sum_probs=62.2
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~ 185 (272)
|.|+|.++||||+|++|+.+|+++|+||.+|.+.|.++.+.++|+|++ ..|.++ ++++++.+++.|.
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~ 68 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG 68 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999889999999999 678888 6788888988886
No 26
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.37 E-value=6.7e-12 Score=92.05 Aligned_cols=68 Identities=25% Similarity=0.507 Sum_probs=62.7
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
+.|.|.++||||+|++++++|+++|+||.+|.++|.+++++|+|+|++++|.++ +++.+++|+++|..
T Consensus 2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~ 69 (72)
T cd04926 2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGP 69 (72)
T ss_pred eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999998889999999999988877 66788899999874
No 27
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=99.37 E-value=4.2e-12 Score=132.47 Aligned_cols=85 Identities=22% Similarity=0.407 Sum_probs=78.2
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
.+|.|.+++....++|+|.|+++||||||++|+++|+.+|++|.+|+|+|.|+.++|+|+|++.+|.++.+++.++.|++
T Consensus 800 ~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~ 879 (895)
T PRK00275 800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQD 879 (895)
T ss_pred CCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999988766677777
Q ss_pred HHhcc
Q 024087 93 RLETD 97 (272)
Q Consensus 93 aL~~~ 97 (272)
+|...
T Consensus 880 ~L~~~ 884 (895)
T PRK00275 880 AICEQ 884 (895)
T ss_pred HHHHH
Confidence 76554
No 28
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=99.37 E-value=7.5e-12 Score=126.79 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=114.3
Q ss_pred EEEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC-CCcc
Q 024087 28 TVIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA-PSLR 105 (272)
Q Consensus 28 t~V~V~s-~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~-~~~~ 105 (272)
-.|+|.. +|++|+|.+++++|+.++++|.+|++.+ +|.+..+|.|...-|.+..+....+.++.++.+..+.. +.+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPAPGIT 625 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCcccCCCC
Confidence 4667766 9999999999999999999999999999 77778999999888888777777888888887775422 1112
Q ss_pred ceeeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087 106 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (272)
Q Consensus 106 ~~v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~ 185 (272)
+ +.. ..+++||.+.||||+|+.|+++|. .|..|++.|.|..++|+||++. |. ..+.++..+.
T Consensus 626 ~-~~~----~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~---~~------~r~~~~~~~~ 687 (693)
T PRK00227 626 A-TFW----HGNILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP---GF------DRATVERDVT 687 (693)
T ss_pred c-eEe----eCcEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC---cc------cHHHHHHHHH
Confidence 2 212 127999999999999999999999 8999999999999999999984 21 1245666666
Q ss_pred cccc
Q 024087 186 NVLR 189 (272)
Q Consensus 186 ~~L~ 189 (272)
.+|.
T Consensus 688 ~~~~ 691 (693)
T PRK00227 688 RVLA 691 (693)
T ss_pred HHHh
Confidence 5554
No 29
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=99.33 E-value=6.3e-12 Score=130.66 Aligned_cols=84 Identities=24% Similarity=0.344 Sum_probs=78.4
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
.||+|.|+|+....+|+|.|.++||||||++|+++|.++|++|..|+|+|.|+.+.|+|+|++.+|.++++++. +.|++
T Consensus 769 ~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~~ 847 (854)
T PRK01759 769 VKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-KALKS 847 (854)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-HHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999988755 88888
Q ss_pred HHhcc
Q 024087 93 RLETD 97 (272)
Q Consensus 93 aL~~~ 97 (272)
+|...
T Consensus 848 ~L~~~ 852 (854)
T PRK01759 848 RLLSN 852 (854)
T ss_pred HHHHH
Confidence 87653
No 30
>PRK05007 PII uridylyl-transferase; Provisional
Probab=99.32 E-value=9.3e-12 Score=129.81 Aligned_cols=84 Identities=19% Similarity=0.342 Sum_probs=76.9
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
.||+|.++|+....+|+|.|.++||||||++|+++|.++|++|..|+|+|.|+.+.|+|+|++.+|.+++ ++.++.|++
T Consensus 794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~~l~~ 872 (884)
T PRK05007 794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQELRQ 872 (884)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999988 455677777
Q ss_pred HHhcc
Q 024087 93 RLETD 97 (272)
Q Consensus 93 aL~~~ 97 (272)
+|...
T Consensus 873 ~L~~~ 877 (884)
T PRK05007 873 RLTEA 877 (884)
T ss_pred HHHHH
Confidence 76553
No 31
>PRK04374 PII uridylyl-transferase; Provisional
Probab=99.32 E-value=1.3e-11 Score=128.41 Aligned_cols=84 Identities=21% Similarity=0.287 Sum_probs=77.4
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
.||+|.+++....++|+|.|.+.||||||++|+++|+++|++|..|+|+|.|+.++|+|+|++.+|.++.+++. +.|++
T Consensus 782 ~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~~~~-~~l~~ 860 (869)
T PRK04374 782 FAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSESAR-QALRD 860 (869)
T ss_pred CCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCChHHH-HHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999998877655 88888
Q ss_pred HHhcc
Q 024087 93 RLETD 97 (272)
Q Consensus 93 aL~~~ 97 (272)
+|...
T Consensus 861 ~L~~~ 865 (869)
T PRK04374 861 ALCAC 865 (869)
T ss_pred HHHHH
Confidence 87654
No 32
>PRK03381 PII uridylyl-transferase; Provisional
Probab=99.31 E-value=1.3e-11 Score=127.13 Aligned_cols=81 Identities=26% Similarity=0.435 Sum_probs=75.5
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
.+|.|.+++....++|+|.|.++||||||++|+++|+++|+||..|+|+|.|+.++|+|+|++.+|.+++++ ++.|++
T Consensus 693 ~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~~l~~ 770 (774)
T PRK03381 693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RAAVEQ 770 (774)
T ss_pred CCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HHHHHH
Confidence 356899999999999999999999999999999999999999999999999999999999999999999876 788888
Q ss_pred HHh
Q 024087 93 RLE 95 (272)
Q Consensus 93 aL~ 95 (272)
+|-
T Consensus 771 ~L~ 773 (774)
T PRK03381 771 AVL 773 (774)
T ss_pred Hhh
Confidence 774
No 33
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=99.29 E-value=1.5e-11 Score=103.57 Aligned_cols=153 Identities=12% Similarity=0.179 Sum_probs=115.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC---CC
Q 024087 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS---FA 101 (272)
Q Consensus 25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~---~~ 101 (272)
..|.+|++.++||||+...+++...++|+||.+++++..|+.|.-+..|. |.| +-...|+++|..... +.
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L~ 75 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDLL 75 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCeE
Confidence 46899999999999999999999999999999999999999888666665 332 456888888876532 11
Q ss_pred CCccce-eee-CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe--eEEEEEEEeCCCCCCCCCHHHH
Q 024087 102 PSLRSS-VGV-MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR--AAAVVHVTDHSTGYAIKDPKRL 177 (272)
Q Consensus 102 ~~~~~~-v~~-~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r--v~dvFyVtd~~~G~~i~d~~~l 177 (272)
..+.+. ... ......+.++|.+.||||++.++|+.|.++|+||.+....|+... -+-.|++.= .-+-|.+ ...
T Consensus 76 v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~--~~i 152 (176)
T COG2716 76 VVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN--LSI 152 (176)
T ss_pred EEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc--CcH
Confidence 111111 111 345568899999999999999999999999999999998887643 455677754 4466765 345
Q ss_pred HHHHHHhccc
Q 024087 178 STIKELLFNV 187 (272)
Q Consensus 178 ~~i~~~L~~~ 187 (272)
+.|+++|.+.
T Consensus 153 ~~l~~~f~al 162 (176)
T COG2716 153 SALRDAFEAL 162 (176)
T ss_pred HHHHHHHHHH
Confidence 6777776543
No 34
>PRK05092 PII uridylyl-transferase; Provisional
Probab=99.26 E-value=4.3e-11 Score=125.61 Aligned_cols=85 Identities=36% Similarity=0.503 Sum_probs=78.0
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
.+|.|.|+|....++|+|.|.++||||||++|+++|+++|+||..|+|.|.++.+.|+|+|++.+|.++.+++.++.|++
T Consensus 829 ~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~~l~~ 908 (931)
T PRK05092 829 VPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQAAIRR 908 (931)
T ss_pred CCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988766677777
Q ss_pred HHhcc
Q 024087 93 RLETD 97 (272)
Q Consensus 93 aL~~~ 97 (272)
+|...
T Consensus 909 ~L~~~ 913 (931)
T PRK05092 909 ALLAA 913 (931)
T ss_pred HHHHH
Confidence 76554
No 35
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.23 E-value=1.1e-10 Score=84.03 Aligned_cols=68 Identities=32% Similarity=0.490 Sum_probs=61.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
|+|.|.++|+||+|++++++|+++|++|.++++.+.+++++|.|++.+++|.+ .+++.+++|+++|..
T Consensus 1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~ 68 (70)
T cd04899 1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQEALRAALGE 68 (70)
T ss_pred CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999888999999999999888 455678889988864
No 36
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=99.16 E-value=2.1e-10 Score=119.52 Aligned_cols=83 Identities=34% Similarity=0.461 Sum_probs=77.7
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
.||.|.|+|...+++|+|.|.++||||||++|+++|+++|++|..|+|.|.|+++.|+|+|++..|.++.+ +..+.|++
T Consensus 765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~~l~~ 843 (850)
T TIGR01693 765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQRLLE 843 (850)
T ss_pred CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999887 56788888
Q ss_pred HHhc
Q 024087 93 RLET 96 (272)
Q Consensus 93 aL~~ 96 (272)
+|..
T Consensus 844 ~L~~ 847 (850)
T TIGR01693 844 VLAA 847 (850)
T ss_pred HHHH
Confidence 8765
No 37
>PRK03059 PII uridylyl-transferase; Provisional
Probab=99.16 E-value=2.6e-10 Score=118.71 Aligned_cols=82 Identities=18% Similarity=0.294 Sum_probs=72.3
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
.+|.|.+++....++|+|.|.++||||||++|+++|+.+|++|..|+|+|.||.++|+|+|++. ++.+++.++.|++
T Consensus 772 ~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~---~~~~~~~~~~l~~ 848 (856)
T PRK03059 772 ITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGS---GLSDNRLQIQLET 848 (856)
T ss_pred CCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCC---CCCCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999543 3456667788888
Q ss_pred HHhcc
Q 024087 93 RLETD 97 (272)
Q Consensus 93 aL~~~ 97 (272)
+|...
T Consensus 849 ~L~~~ 853 (856)
T PRK03059 849 ELLDA 853 (856)
T ss_pred HHHHH
Confidence 87653
No 38
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=99.06 E-value=1.5e-09 Score=77.54 Aligned_cols=70 Identities=43% Similarity=0.649 Sum_probs=61.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L 188 (272)
+.|.+.+.|+||+|++|+.+|+++|++|.++.+.+.+++..++|++.+ ..+.+. ++++.+.|++.|..++
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~~~~l~~~l~~~~ 70 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRPL-DPERIARLEEALEDAL 70 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCcC-CHHHHHHHHHHHHhhC
Confidence 368899999999999999999999999999999999889999999988 666764 4578888998886543
No 39
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.1e-09 Score=108.82 Aligned_cols=83 Identities=33% Similarity=0.502 Sum_probs=74.0
Q ss_pred CCCEEEEEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 13 NPPRVVIDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 13 ~~p~V~i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
-+|.|.|.+......|++.|.+.||||||++++++|++++++|..|+|+|-|..+.|+|+|++..|.+++++ ..+.+.+
T Consensus 777 i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l~~~-~~q~l~~ 855 (867)
T COG2844 777 IPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQALNAE-LRQSLLQ 855 (867)
T ss_pred cCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccCCHH-HHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999999999999999998654 4455555
Q ss_pred HHhc
Q 024087 93 RLET 96 (272)
Q Consensus 93 aL~~ 96 (272)
.|..
T Consensus 856 ~ll~ 859 (867)
T COG2844 856 RLLE 859 (867)
T ss_pred HHHH
Confidence 5443
No 40
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.92 E-value=1.6e-08 Score=72.23 Aligned_cols=68 Identities=38% Similarity=0.580 Sum_probs=59.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
+.|.|.++|+||+|++++++|+.+|++|.++++.+.+++..++|++..+++.. .+++..+.|++.|..
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~ 68 (70)
T cd04873 1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALED 68 (70)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHh
Confidence 36889999999999999999999999999999999766999999999887776 445677888888854
No 41
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.87 E-value=1.6e-08 Score=73.56 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=52.0
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee-CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~-g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L 188 (272)
..|-|.++|||||++.|+.+|..+|+||..|+|.|. ++.+-|+|+|.+ .+|.. .+.++++|+.+|
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~~------~~~~~~~~~~~~ 67 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRGE------TAALGHALQKEI 67 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCccc------hHHHHHHHHHhh
Confidence 367889999999999999999999999999999866 467999999999 44543 234555555443
No 42
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.74 E-value=7.2e-08 Score=71.31 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=53.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L 188 (272)
+.+|.+.|+||||+++.|+++|+++||||...+.++.+++..-++-|.- + +...+.++..|....
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~-~-------~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSI-P-------EDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEE-S-------HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEe-C-------cccHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999999888876 3 446677877776543
No 43
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.63 E-value=2.3e-07 Score=65.37 Aligned_cols=48 Identities=27% Similarity=0.400 Sum_probs=40.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe--eEEEEEEEe
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR--AAAVVHVTD 164 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r--v~dvFyVtd 164 (272)
|.|.+.++||||+|++|+.+|+++|+||..+...+.++. ...++.+.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~ 50 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD 50 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence 578999999999999999999999999999999999884 344444443
No 44
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.62 E-value=1.2e-07 Score=67.00 Aligned_cols=66 Identities=27% Similarity=0.425 Sum_probs=54.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
++|+|.|+|+.||-.+++.++.+.|++|.++.++|+|.|++-+|+|...... + +-..+.|++.|..
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~-~--~~rW~lLK~RL~~ 66 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPS-I--KVRWDLLKNRLMS 66 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCC-C--cccHHHHHHHHHh
Confidence 4799999999999999999999999999999999999999999999854322 1 1245566666654
No 45
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=98.60 E-value=5.7e-07 Score=66.48 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=51.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
..+|+|.++||||++++++++|+++|+||.+.++.+.+|.|.-.+.|.-+ +...+.|+++|...
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~l 65 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEEL 65 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999988888754 23456677777653
No 46
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=98.52 E-value=1.2e-06 Score=61.63 Aligned_cols=48 Identities=27% Similarity=0.318 Sum_probs=41.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCC--EEEEEEEEEc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGG--WFMDVFNVID 75 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg--~~~dvF~V~d 75 (272)
+.|.|.++||||+|++++++|+++|+||..+++.+.++ +.+.++.+.+
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~ 50 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD 50 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence 57899999999999999999999999999999998554 6666666554
No 47
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=98.47 E-value=7.8e-06 Score=65.25 Aligned_cols=113 Identities=24% Similarity=0.227 Sum_probs=85.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccce
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSS 107 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~ 107 (272)
-+|+|...||||-|+.++.+|...|+||..-.|.-.+.+-+-...|.++ ++-.++|+... ..
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-----------d~A~~~Lee~g-------F~ 65 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-----------DEAHSVLEEAG-------FT 65 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-----------HHHHHHHHHCC-------cE
Confidence 4689999999999999999999999999988887666655544554332 23456676642 12
Q ss_pred eeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEE
Q 024087 108 VGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVT 163 (272)
Q Consensus 108 v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVt 163 (272)
|.. .-++-|...|+||-|+.|+.+|.+.++|+..+...++..+ +.-+|-+.
T Consensus 66 Vr~-----~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~e 117 (142)
T COG4747 66 VRE-----TDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVE 117 (142)
T ss_pred EEe-----eeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhh
Confidence 221 2378888999999999999999999999999999887754 44344333
No 48
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.42 E-value=2e-06 Score=63.70 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=43.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID 75 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d 75 (272)
.+|++.|+||||+.+++++.|+++|+||.+++.+..+|+|.-...+..
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~ 49 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG 49 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe
Confidence 689999999999999999999999999999999998888866665553
No 49
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.40 E-value=1.6e-06 Score=63.75 Aligned_cols=47 Identities=30% Similarity=0.338 Sum_probs=42.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
++.+.|.||||++++|+++|+++||||...+-.+.+++..-.|.+.-
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~ 47 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI 47 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc
Confidence 37899999999999999999999999999999999988887787764
No 50
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.24 E-value=7.8e-06 Score=60.04 Aligned_cols=50 Identities=18% Similarity=0.088 Sum_probs=44.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCC
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDG 78 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G 78 (272)
+|+|.++||||+.++++++|+++|+||.+.+..+.++.|.-.+.|.-+.+
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~ 50 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS 50 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence 47999999999999999999999999999998887787777888876654
No 51
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=98.20 E-value=6.2e-06 Score=61.07 Aligned_cols=47 Identities=26% Similarity=0.470 Sum_probs=41.1
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEE
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVT 163 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVt 163 (272)
.+|.+.|+||||+++.|+++|+++||||......+.+++..-.+-+.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~ 48 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE 48 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE
Confidence 58899999999999999999999999999999999888765545444
No 52
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=98.15 E-value=2.6e-05 Score=57.69 Aligned_cols=64 Identities=23% Similarity=0.377 Sum_probs=49.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee--CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~--g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
.+.|+|.+.||||+|++|+.++++.|+||..+++.+. ++.+.-.|.+.= .|.+++..|-+.|+.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKLRQ 71 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHHCT
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHHHC
Confidence 5689999999999999999999999999999999985 445555555532 356788888877764
No 53
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.10 E-value=1.1e-05 Score=60.94 Aligned_cols=48 Identities=23% Similarity=0.332 Sum_probs=42.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
.+|.+.|+||||++++|+++|+++||||...+-.+.+++..-.+.+.-
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~ 49 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI 49 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe
Confidence 478999999999999999999999999999999998877666666654
No 54
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.08 E-value=7.3e-06 Score=59.87 Aligned_cols=45 Identities=22% Similarity=0.423 Sum_probs=36.9
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
+|.+.|+||||++++|+++|+++||||...+..+... ...|++.-
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~--~~~f~~~~ 45 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPD--SGRFFMRV 45 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCC--CCeEEEEE
Confidence 4789999999999999999999999999999887322 23466643
No 55
>PRK00194 hypothetical protein; Validated
Probab=98.04 E-value=2.1e-05 Score=59.61 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=40.5
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV 162 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV 162 (272)
.++|.+.|+||||++++|+++|+++|+||...+-.+.++...-.+.+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v 49 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLV 49 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEE
Confidence 57899999999999999999999999999999988877655554444
No 56
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=98.02 E-value=1.5e-05 Score=69.17 Aligned_cols=51 Identities=16% Similarity=0.364 Sum_probs=47.4
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
.++.+|.+.|+|||||++.|+++|+++||||...+....|+..+-++-|+.
T Consensus 6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~ 56 (190)
T PRK11589 6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG 56 (190)
T ss_pred ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC
Confidence 468899999999999999999999999999999999999999888888854
No 57
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.98 E-value=5e-05 Score=56.01 Aligned_cols=36 Identities=33% Similarity=0.494 Sum_probs=34.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g 153 (272)
+|.+.|+||||++++|+++|+++|+||......|.+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 368999999999999999999999999999999987
No 58
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.98 E-value=5.3e-05 Score=55.24 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=37.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI 74 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~ 74 (272)
+|+|.|+||||++++++++|+++|+||.+.+..+ .++.+.-.+.+.
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~ 48 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFE 48 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEE
Confidence 4789999999999999999999999999999986 344444344443
No 59
>PRK00194 hypothetical protein; Validated
Probab=97.97 E-value=4.2e-05 Score=57.91 Aligned_cols=48 Identities=27% Similarity=0.327 Sum_probs=42.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~ 74 (272)
..+|+|.|+||||++++++++|+++|+||.+....+.++.+.-.+.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~ 50 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence 578999999999999999999999999999999888888777655554
No 60
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.94 E-value=3.7e-05 Score=58.09 Aligned_cols=49 Identities=24% Similarity=0.263 Sum_probs=43.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC 76 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~ 76 (272)
.+|++.|+||||++++++++|+++|+||.+....+.++.+.-.+.+.-+
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence 5789999999999999999999999999999999877777666666644
No 61
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.93 E-value=8.7e-05 Score=54.69 Aligned_cols=48 Identities=21% Similarity=0.209 Sum_probs=40.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC------CEEEEEEEEEcC
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG------GWFMDVFNVIDC 76 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g------g~~~dvF~V~d~ 76 (272)
+|+|.|+|+||+++++++.|+++|+||.+....+.+ +.+.-.+.+.-+
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p 54 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP 54 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence 478999999999999999999999999999998865 556555666544
No 62
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.85 E-value=0.00057 Score=63.10 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=39.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE--ecCCEEEEEEEEE
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS--SDGGWFMDVFNVI 74 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~--T~gg~~~dvF~V~ 74 (272)
...+|+|.|+|||||.+.++++|+++|+||.+.+.+ +..|.+.-.+.+.
T Consensus 8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 356899999999999999999999999999999997 4344443333333
No 63
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.84 E-value=6.9e-05 Score=53.21 Aligned_cols=67 Identities=19% Similarity=0.299 Sum_probs=57.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~ 187 (272)
++|.|.++|+.||=.+|++++.+.|++|.++.++|.|.-.--+|.|... ..++ +.+.+.+|.+|..+
T Consensus 1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~--~~~~--~~rW~lLK~RL~~~ 67 (69)
T cd04894 1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR--PPSI--KVRWDLLKNRLMSA 67 (69)
T ss_pred CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC--CCCC--cccHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999888889999862 3333 45788899988754
No 64
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.81 E-value=0.00024 Score=51.27 Aligned_cols=62 Identities=13% Similarity=0.255 Sum_probs=46.5
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (272)
Q Consensus 119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~ 187 (272)
|.+.+.||||+|++|+.++++.|+||......+.. +.+...|-+. +.+.++++.+...|..+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ve-------v~~~~~l~~i~~~L~~i 64 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVD-------APSEEHAETIVAAVRAL 64 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEE-------cCCHHHHHHHHHHHhcC
Confidence 68899999999999999999999999998887654 3333333332 23467778777777643
No 65
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=97.78 E-value=0.0012 Score=60.82 Aligned_cols=110 Identities=7% Similarity=0.101 Sum_probs=64.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccc
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS 106 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~ 106 (272)
+|+|.|+|||||.+.+++.|+++|+||.+.+.+.+ +|+|.-.+.+.-+ +..++-+++.+.++.++..... .
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~------l 74 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFE------M 74 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhC------C
Confidence 68999999999999999999999999999999984 4776656665533 2223333444444442333221 1
Q ss_pred eeeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEE
Q 024087 107 SVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVV 145 (272)
Q Consensus 107 ~v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~ 145 (272)
.+.+........|-|.+.-+--=|.+|......-.+++.
T Consensus 75 ~i~l~~~~~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~ 113 (280)
T TIGR00655 75 TWELILADKLKRVAILVSKEDHCLGDLLWRWYSGELDAE 113 (280)
T ss_pred EEEEecCCCCcEEEEEEcCCChhHHHHHHHHHcCCCCcE
Confidence 111111111223333333334456666666665555443
No 66
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=97.73 E-value=0.00022 Score=52.11 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=45.8
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~ 187 (272)
.|++.+.||+|+|++|+.++++.|+||.+.++.+. +. ++++- .+.+..+++.+-++|+.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~----i~l~i-----~v~~~~~L~~li~~L~~i 61 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR----IYLNF-----PTIEFEKLQTLMPEIRRI 61 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce----EEEEe-----EecCHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999999775 22 33332 123466777777777643
No 67
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.64 E-value=0.00065 Score=50.08 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=50.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.+.+.|.+.||||+|+++++++++.|+||.+..+.+ .++.+.-.|.+.-. +.+.++.|.+.|...
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~------d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVK------DLEHLNQIIRKLRQI 72 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEES------SHHHHHHHHHHHCTS
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEEC------CHHHHHHHHHHHHCC
Confidence 357899999999999999999999999999999998 47787777776532 345667777777654
No 68
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.63 E-value=0.0018 Score=59.74 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=42.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI 74 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~ 74 (272)
...+|+|.|+|||||.++++++|+++|+||.+.+..+ .+|.|.-.+.+.
T Consensus 5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~ 55 (286)
T PRK06027 5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFE 55 (286)
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEE
Confidence 4678999999999999999999999999999999998 777665555554
No 69
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.55 E-value=0.00048 Score=63.50 Aligned_cols=42 Identities=24% Similarity=0.452 Sum_probs=37.7
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe--eCCe
Q 024087 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT--HNDR 155 (272)
Q Consensus 114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T--~g~r 155 (272)
.+.++|.+.|.||||++++|+++|+++||||......+ .++.
T Consensus 4 ~~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~ 47 (286)
T PRK06027 4 MQRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR 47 (286)
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe
Confidence 34679999999999999999999999999999999988 5553
No 70
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.52 E-value=0.00013 Score=55.54 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=38.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV 162 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV 162 (272)
..+|.|.|.||||+.+.|+++|+++|+||....=.-..+...-.+.|
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV 49 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLV 49 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEE
Confidence 45899999999999999999999999999987644444555555555
No 71
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.49 E-value=0.00095 Score=47.02 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=29.7
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (272)
Q Consensus 119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~ 152 (272)
+.+..+|+||+|++|+.+|++.|+||.+......
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRA 34 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEec
Confidence 3577899999999999999999999998876543
No 72
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.47 E-value=0.0066 Score=56.03 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCC
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDG 78 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G 78 (272)
..+|+|.|+|||||.++++++|+++|+||.+.+..+ .++.|.-.+.+..+.+
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~ 60 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG 60 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC
Confidence 467999999999999999999999999999999875 4556655566654444
No 73
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.46 E-value=0.0019 Score=46.56 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=48.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
+.|.+.||||+|+++++++++.|.||.+....+ ..|++.-.|.+.-. +...++.|.+.|...
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~~i 64 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVRAL 64 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHhcC
Confidence 678999999999999999999999999888876 45776656665432 234667777777664
No 74
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.44 E-value=0.0012 Score=47.30 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=45.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
.|.+.+.||||+|.+|+.+|++.|++|......+..+ ..+.+.+++.. .+...++.+-+.|..
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~------~~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE------TSEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc------CCHHHHHHHHHHHHc
Confidence 5788999999999999999999999999988765432 33444444442 134555656666553
No 75
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=97.38 E-value=0.00065 Score=46.57 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=37.2
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEE
Q 024087 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVT 163 (272)
Q Consensus 119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVt 163 (272)
|++...|+||.|++++.+|.++|+||.+..+...+ +++.-.|-+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 45788999999999999999999999999988776 5555555553
No 76
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00022 Score=60.55 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=56.6
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
.++.+|...|.||||++..|+++..++|||+...++.++|+..+-+..++. + ......++..|..
T Consensus 3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg-s-------~dav~~le~~l~~ 67 (176)
T COG2716 3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG-S-------WDAVTLLEATLPL 67 (176)
T ss_pred ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee-C-------HHHHHHHHHHhhc
Confidence 457899999999999999999999999999999999999999999999976 3 4556677776653
No 77
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=97.36 E-value=0.0022 Score=45.01 Aligned_cols=62 Identities=13% Similarity=0.262 Sum_probs=45.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee-CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~-g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
.|.+.+.|+||+|.+|+.+|+++|++|.+....+. ++....+.+.++ . .+ ..++.+.++|..
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~-----~~-~~~~~l~~~l~~ 64 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE-G-----DD-DVIEQIVKQLNK 64 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE-C-----CH-HHHHHHHHHHhC
Confidence 46788999999999999999999999999998876 444444444444 1 12 455666666653
No 78
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=97.36 E-value=0.00088 Score=47.67 Aligned_cols=44 Identities=14% Similarity=0.295 Sum_probs=37.4
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV 162 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV 162 (272)
..|.|..+|+||.|++|+++|.++|+||.+..+...+++ .++.+
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl 45 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRL 45 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEE
Confidence 367888999999999999999999999999998777664 44444
No 79
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=97.31 E-value=0.0023 Score=47.59 Aligned_cols=66 Identities=5% Similarity=0.113 Sum_probs=49.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE-eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~-T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
..|.+...|+||+|++|+.+|+..|.||.+..+. |.......+..+.. . ++..+++|..+|.....
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~-~------~~~~i~qi~kQL~KLid 69 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV-C------TENEATLLVSQLKKLIN 69 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE-C------CHHHHHHHHHHHhCCcC
Confidence 3688999999999999999999999999999986 44444555444433 1 34567788888876543
No 80
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=97.29 E-value=0.00052 Score=63.26 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=37.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV 162 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV 162 (272)
.++|.+.|+||||++++||++|+++|+||....-.|.. ....|+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~--~~~~F~m 51 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDR--LSGRFFM 51 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecC--CCCeEEE
Confidence 56899999999999999999999999999998877543 3344444
No 81
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.27 E-value=0.0025 Score=45.94 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=44.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCHH-HHHHHHHHhcc
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPK-RLSTIKELLFN 186 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~~-~l~~i~~~L~~ 186 (272)
.|.+.+.||||+|++|+++|++.|+||......+.. +.+.-.|-+.- .+.+ .+..|-++|..
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v-------~~~~~~l~~l~~~L~~ 65 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT-------STMNGDIDELLEELRE 65 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc-------CchHHHHHHHHHHHhc
Confidence 578999999999999999999999999998765433 33333444432 2233 66777777664
No 82
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.24 E-value=0.0029 Score=45.04 Aligned_cols=47 Identities=21% Similarity=0.322 Sum_probs=36.9
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC--eeEEEEEEE
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND--RAAAVVHVT 163 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~--rv~dvFyVt 163 (272)
+.+.+..+|+||.|++|+++|+++|+||.......... ...-.|.+.
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~ 50 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK 50 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEEC
Confidence 46788999999999999999999999999887766532 333345554
No 83
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=97.16 E-value=0.002 Score=55.21 Aligned_cols=64 Identities=11% Similarity=0.288 Sum_probs=45.6
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe--eCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccc
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT--HNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVL 188 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T--~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L 188 (272)
..|.+.+.||||+|++|+.+|+..|+||.+..+.. ..+-...++-+.. ++..+++|+++|....
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~--------~~~~ieqL~kQL~KLi 68 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG--------DDRTIEQLTKQLYKLV 68 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC--------CHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999965 2233333333322 1233567777776543
No 84
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=97.16 E-value=0.0014 Score=45.75 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=37.0
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC--CeeEEEEEE
Q 024087 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHV 162 (272)
Q Consensus 119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g--~rv~dvFyV 162 (272)
+.+.+.|+||+|++|+.+|++.|+||.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 67889999999999999999999999999987765 445555555
No 85
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=97.15 E-value=0.0019 Score=59.65 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=32.7
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~ 150 (272)
.++|.+.|+||||+++.||.+|+++|+||..+.-.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 56899999999999999999999999999998875
No 86
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.15 E-value=0.00056 Score=50.33 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=54.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC--Ce-eEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g--~r-v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
-+|++|.-||-.+|++|-+|..+|+.|-+|+|.-|- ++ .+-..++.+ ..+..+..+..-.+|.+++...|.+
T Consensus 2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~-e~~~~~~~~~~r~~i~drv~~~lmg 76 (77)
T cd04898 2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLL-EHDRLKLGGRQRSKVVDRVTKTLMG 76 (77)
T ss_pred cccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeec-CCCccccchHHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999996553 33 444455555 3355566555567788877777654
No 87
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0039 Score=43.62 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=30.4
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (272)
Q Consensus 119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T 151 (272)
|.+.+.||||.|.+|+.+|+++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 577899999999999999999999999988766
No 88
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=97.12 E-value=0.0043 Score=52.36 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=50.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
.|.+...|+||.|++|+.+|++.|+||.+..+...++ ....+-.+.+ | |+..+++|..+|......
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~---~----d~~~i~qi~kQl~Kli~V 69 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV---G----DDKVLEQITKQLNKLVDV 69 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE---C----CHHHHHHHHHHHhcCccE
Confidence 6889999999999999999999999999998877663 3333333334 2 356778888888875543
No 89
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=97.11 E-value=0.00099 Score=50.82 Aligned_cols=48 Identities=25% Similarity=0.286 Sum_probs=41.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~ 74 (272)
..+|+|.++||||+.+.++.+|+++|.||.+-...--.|||--.+.|-
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~ 50 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD 50 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence 468999999999999999999999999999877766677776566654
No 90
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.09 E-value=0.0021 Score=44.74 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=31.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g 153 (272)
++.+.-+||||-|++++.+|+++|+||.+...+...
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~ 36 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEK 36 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccC
Confidence 367788999999999999999999999988876654
No 91
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.0029 Score=57.36 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=39.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEE
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMD 69 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~d 69 (272)
...++++.|+|++||.+.+++.|..+|+||.++..+++ .|+|+-
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFm 51 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFM 51 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEE
Confidence 56899999999999999999999999999999999973 566543
No 92
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=97.06 E-value=0.0055 Score=45.23 Aligned_cols=48 Identities=27% Similarity=0.290 Sum_probs=40.3
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEe
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTD 164 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd 164 (272)
+.+.+..+|+||.|++|..+|+++|+||.+.+...... ...-+|||.-
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~ 50 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF 50 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence 46777889999999999999999999999998776653 4667888865
No 93
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=97.03 E-value=0.0058 Score=51.77 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=49.5
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
..|.+...|+||.|++|+.+|++.|+||.+..+.... .....+..+.+ | |+..+++|..+|......
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~----~~~~i~qi~kQl~KLidV 70 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---G----DEQVIEQITKQLNKLIDV 70 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---C----CHHHHHHHHHHHhccccE
Confidence 3689999999999999999999999999998886654 23333333334 1 356778888888765443
No 94
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=97.02 E-value=0.0054 Score=46.39 Aligned_cols=66 Identities=11% Similarity=0.158 Sum_probs=50.4
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
.|.+...|+||+|++|+.+|+..|+||.+..+.... .....+-.+.. . .|+..+++|..+|.....
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~-----~d~~~ieqI~kQL~Klid 70 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-I-----QDDTSLHILIKKLKQQIN 70 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-C-----CCHHHHHHHHHHHhCCcc
Confidence 688899999999999999999999999999986544 44555544443 1 245677888888876543
No 95
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.99 E-value=0.0061 Score=42.81 Aligned_cols=36 Identities=17% Similarity=0.466 Sum_probs=32.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g 153 (272)
.|.+.+.|+||.|++|+..|.+++++|.+....+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 578899999999999999999999999988876653
No 96
>PRK08577 hypothetical protein; Provisional
Probab=96.96 E-value=0.0085 Score=49.02 Aligned_cols=43 Identities=23% Similarity=0.474 Sum_probs=37.9
Q ss_pred CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC
Q 024087 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (272)
Q Consensus 111 ~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g 153 (272)
.+....+.|.+.+.||||+|++|+++|++++++|.+....+..
T Consensus 51 ~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 51 LPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELK 93 (136)
T ss_pred CCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEec
Confidence 3455588999999999999999999999999999998887754
No 97
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=96.96 E-value=0.007 Score=44.03 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=44.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.+.|.+.||+|+|++++.++++.|.||.+..+.+. +...-.+.|. +.+.++.|.+.|...
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~--------~~~~L~~li~~L~~i 61 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTI--------EFEKLQTLMPEIRRI 61 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEec--------CHHHHHHHHHHHhCC
Confidence 47899999999999999999999999999999876 5422222332 234456666666654
No 98
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.95 E-value=0.009 Score=41.88 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=43.1
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-----CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-----GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-----gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
+.|..+|+||+|++++.+|++.|+||.+...... .+...-.|.+.-. +....+.+.+.|...
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~l~~~ 67 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR------GAEHIEEIIAALREA 67 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC------CHHHHHHHHHHHHHc
Confidence 3578899999999999999999999998876643 3544444444432 123456666666553
No 99
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=96.86 E-value=0.0045 Score=42.33 Aligned_cols=46 Identities=26% Similarity=0.298 Sum_probs=39.0
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEc
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVID 75 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d 75 (272)
+.+..+|+||.+.+++++|.+.|+||...++... ++.++-.|.+.+
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 3578899999999999999999999999998874 477776777654
No 100
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=96.86 E-value=0.0085 Score=41.69 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=38.0
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC--CEEEEEEEE
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG--GWFMDVFNV 73 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g--g~~~dvF~V 73 (272)
+.|...|++|++++++++|++.|++|.+......+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 57899999999999999999999999999988743 666666666
No 101
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=96.83 E-value=0.011 Score=40.05 Aligned_cols=61 Identities=26% Similarity=0.422 Sum_probs=42.3
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (272)
Q Consensus 119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~ 185 (272)
|.+.+.|+||++.+|+.+|.+++++|....+...++....+.+..... +...++.+.+.|.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~ 61 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR------DLEHLARIMRKLR 61 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC------CHHHHHHHHHHHh
Confidence 467899999999999999999999999998877653333333222211 2344555665554
No 102
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=96.83 E-value=0.0067 Score=55.81 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=32.5
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~ 152 (272)
+|.+.|+||||+++.||.+|+++|+||....-.+.
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~ 36 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTD 36 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEc
Confidence 68999999999999999999999999999887764
No 103
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=96.83 E-value=0.014 Score=59.97 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=55.6
Q ss_pred eEEEEEc-CCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087 117 TSIEFTG-TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 117 T~Iev~~-~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
..+.|.. +|+||+|+.++.+|+.+|.+|.+|.+.+ ++.+...|-|.. ..|.|.+ +. .+++.+...+.+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~~-~~---~~~~~~~~~~~~ 615 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDFD-PQ---EFLQAYKSGVYS 615 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCCC-hH---HHHHHHHHhhcC
Confidence 5777777 9999999999999999999999999999 888899999998 6688764 43 345555555544
No 104
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=96.77 E-value=0.013 Score=45.46 Aligned_cols=67 Identities=19% Similarity=0.283 Sum_probs=49.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
...|.+...|+||+|+.|+.+|+..|.||.+..+.-.+.. ..-+.-+.. + +..+++|..+|......
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~-----~~~i~Qi~kQL~KLidV 75 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---D-----DQRLEQMISQIEKLEDV 75 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---C-----chHHHHHHHHHhCCcCE
Confidence 4578999999999999999999999999999988655543 344333332 1 24778888888765543
No 105
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=96.59 E-value=0.014 Score=43.36 Aligned_cols=65 Identities=9% Similarity=0.173 Sum_probs=46.8
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
..|.+...|+||.|++|+.+|+..|.||.+..+.-.. .....+-.+.+ + +..+++|..+|.....
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~--~------~~~i~ql~kQL~KL~d 69 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA--S------ERPIDLLSSQLNKLVD 69 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC--C------CchHHHHHHHHhcCcC
Confidence 4789999999999999999999999999999986533 33333333332 1 3445677777765443
No 106
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.59 E-value=0.003 Score=44.66 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=37.1
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~ 74 (272)
+.+.+.|+||++++++.+|++.|.||...+..+.+|.+.-.|.+.
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 677999999999999999999999998877666667766555543
No 107
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.58 E-value=0.011 Score=42.12 Aligned_cols=43 Identities=26% Similarity=0.428 Sum_probs=33.6
Q ss_pred EEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee--CCeeEEEEEE
Q 024087 120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHV 162 (272)
Q Consensus 120 ev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~--g~rv~dvFyV 162 (272)
-+...|+||.+++|+.+|+++|+||.+...... ++.+.-+|.+
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 357899999999999999999999998877553 3445444444
No 108
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=96.57 E-value=0.012 Score=41.79 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=37.1
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~ 74 (272)
..+.|..+|+||.|++++.+|.+.|+||...+++..++. -++.+.
T Consensus 2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~ 46 (66)
T cd04908 2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI 46 (66)
T ss_pred EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence 367889999999999999999999999999998875443 334443
No 109
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.01 Score=53.92 Aligned_cols=66 Identities=15% Similarity=0.377 Sum_probs=47.9
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeC--CCCCCCCCHHHHHHHHHHhcc
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDH--STGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~--~~G~~i~d~~~l~~i~~~L~~ 186 (272)
..+++.++|+|+|||++.|+..|.++||||..+.-.+ +.....|+.+-+ ..+.|.+ .+.+++.|..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~--D~~~g~FFmR~~f~~~~~~~~----~~~l~~~f~~ 73 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD--DPETGRFFMRVEFEGEGGPLD----REALRAAFAP 73 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc--ccccCeEEEEEEEecCCCccc----HHHHHHHHHH
Confidence 4679999999999999999999999999999988764 454555665442 3344432 3455555554
No 110
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.55 E-value=0.022 Score=39.70 Aligned_cols=45 Identities=27% Similarity=0.289 Sum_probs=35.5
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEE
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVI 74 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~-gg~~~dvF~V~ 74 (272)
+.+...|+||.+.+++.+|+++|++|....... . ++.+.-.+.+.
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~ 48 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVD 48 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeC
Confidence 578899999999999999999999999888766 2 45544334443
No 111
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=96.54 E-value=0.0028 Score=44.85 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=32.3
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEE
Q 024087 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAA 158 (272)
Q Consensus 119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~d 158 (272)
|-+.+.||||+|++|+.+|++.|+||.+....+.++.+.-
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~ 41 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYV 41 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEE
Confidence 3457999999999999999999999988877665533333
No 112
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.49 E-value=0.012 Score=40.87 Aligned_cols=45 Identities=24% Similarity=0.408 Sum_probs=35.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC--CEEEEEEEE
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG--GWFMDVFNV 73 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g--g~~~dvF~V 73 (272)
++.|.-+|+||-|++++++|.++|+||.+...+... +...-.|.+
T Consensus 1 ~i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 1 VLAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 367889999999999999999999999988876543 555434444
No 113
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.48 E-value=0.022 Score=40.92 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=30.2
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee
Q 024087 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH 152 (272)
Q Consensus 119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~ 152 (272)
+.+.-+||||-|++++.+|+++|.||.+......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5678899999999999999999999998876554
No 114
>PRK07334 threonine dehydratase; Provisional
Probab=96.44 E-value=0.053 Score=52.17 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=47.5
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee----C-CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH----N-DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~----g-~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
.+.|+|.+.||||+|++|+.+|++.++||.+....+. . +.+.-.|-|. +.+.++++.+..+|+.
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-------V~d~~~L~~vi~~Lr~ 394 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-------TRDAAHLQEVIAALRA 394 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-------eCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999988764 2 2322222221 2346777777777764
No 115
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.44 E-value=0.028 Score=39.31 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=36.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEE
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVI 74 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~ 74 (272)
.+.+.++|+||.|++++..|++++++|.+....+. ++.+.-.|.+.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~ 48 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELE 48 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEe
Confidence 57889999999999999999999999998888764 34443334443
No 116
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=96.34 E-value=0.021 Score=40.59 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=37.6
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEc
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVID 75 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d 75 (272)
+.+..+|+||.+++++++|+++|+||.+..... .++..+-+|.+..
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 467899999999999999999999999888754 4566665666643
No 117
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.32 E-value=0.018 Score=36.96 Aligned_cols=46 Identities=37% Similarity=0.576 Sum_probs=35.3
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEe
Q 024087 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTD 164 (272)
Q Consensus 119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd 164 (272)
|.+.+.|+||++++|+.+|.+.|++|........... ...+++..+
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVD 47 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEe
Confidence 4678999999999999999999999999988665422 334444443
No 118
>PRK04435 hypothetical protein; Provisional
Probab=96.26 E-value=0.045 Score=45.55 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=48.5
Q ss_pred CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCCCCCH-HHHHHHHHHhcc
Q 024087 112 PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYAIKDP-KRLSTIKELLFN 186 (272)
Q Consensus 112 ~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~i~d~-~~l~~i~~~L~~ 186 (272)
.......|.+...||||+|++|+.+|++.|+||......... +.+.-.|-+.- .+. ..++.|-++|..
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev-------s~~~~~L~~Li~~L~~ 134 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT-------SSMEGDIDELLEKLRN 134 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe-------CChHHHHHHHHHHHHc
Confidence 466788999999999999999999999999999988765433 33444444432 122 256666666653
No 119
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.24 E-value=0.051 Score=38.99 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=46.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.+.|.+.|+||++++++.+|+++|.+|......+. +|.+--.|.+.-.+. +..++.|.+.|...
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-----~~~l~~l~~~L~~i 66 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-----NGDIDELLEELREI 66 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-----HHHHHHHHHHHhcC
Confidence 47899999999999999999999999998877653 455554566543221 12567777777664
No 120
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.22 E-value=0.056 Score=38.25 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=32.3
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD 63 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~ 63 (272)
..+.+..+|+||.|+++++.|+++|++|...+....
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 357889999999999999999999999998887663
No 121
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.15 E-value=0.023 Score=40.42 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=42.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-C-CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-G-GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-g-g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
.+.|.+.|+||++.+++.+|+++|++|......+. + +.+.-.+.+... +....+.+.+.|..
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~------~~~~l~~~i~~L~~ 65 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET------SEAALNAALAEIEA 65 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC------CHHHHHHHHHHHHc
Confidence 46788999999999999999999999999887653 2 544433333222 23344555555554
No 122
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=96.11 E-value=0.039 Score=35.26 Aligned_cols=45 Identities=27% Similarity=0.474 Sum_probs=35.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEE
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG-GWFMDVFNVI 74 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g-g~~~dvF~V~ 74 (272)
|.+.++|++|++.++.++|.+.|++|.+....... .+...++...
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVV 46 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEE
Confidence 46889999999999999999999999999987643 3333344433
No 123
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=96.05 E-value=0.041 Score=38.29 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=36.4
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEE
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVI 74 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~dvF~V~ 74 (272)
+.+.+.|+||++.+++.+|.++|++|......+. ++.+.-.|.+.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 49 (72)
T cd04878 3 LSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE 49 (72)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence 6788999999999999999999999999888764 45554445544
No 124
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=96.04 E-value=0.033 Score=39.65 Aligned_cols=57 Identities=11% Similarity=0.269 Sum_probs=38.2
Q ss_pred CCcchHHHHHHHHHhCCCcEEEEEEEeeC--CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 125 DRpGLL~~It~vL~~~g~~I~~A~i~T~g--~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
|+||.|..|+.+|...|.||.+..+.... +...-.+-+.. + +..++.|..+|.+...
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~------~~~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--D------DREIEQLVKQLEKLID 59 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---------CCHHHHHHHHHHCSTT
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--C------chhHHHHHHHHhccCC
Confidence 78999999999999999999999998733 33333333322 1 2345667777765543
No 125
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.96 E-value=0.036 Score=39.40 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=30.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~ 150 (272)
+.+.+..+|+||.|.+|+.+|.++|+||.+....
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~ 35 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVY 35 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEe
Confidence 4788899999999999999999999999988653
No 126
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=95.95 E-value=0.09 Score=39.78 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=44.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.+.+...|+||.|++++++|+..|+||.+-.+.. +.|..=-++.+. .| ++...+.|.+-|...
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~----d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQ----DDTSLHILIKKLKQQ 68 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CC----CHHHHHHHHHHHhCC
Confidence 5889999999999999999999999999988874 334332233332 12 245566676666553
No 127
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=95.83 E-value=0.13 Score=34.59 Aligned_cols=61 Identities=20% Similarity=0.334 Sum_probs=43.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG-GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g-g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
+.|.+.|+||.+.++.+.|.+.+++|.+..+...+ +++.-.|.+..++ ......+.+.|..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~ 62 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD------LEHLARIMRKLRQ 62 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC------HHHHHHHHHHHhC
Confidence 46789999999999999999999999999887654 5544344444322 2234555566654
No 128
>PRK08577 hypothetical protein; Provisional
Probab=95.83 E-value=0.17 Score=41.31 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=51.8
Q ss_pred EEEEEeCC--CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCcHHHHHHHH
Q 024087 16 RVVIDNNT--CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQ 91 (272)
Q Consensus 16 ~V~i~n~~--~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~dvF~V~d~~G~~~~~~~~~~~I~ 91 (272)
.+.+.+-. .+....+.|.+.|+||+|++++++|+++|.+|.+....+. ++.+.-.|.+.-.+. +...+.+.
T Consensus 43 ~~~~~~~~~~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-----~~~l~~l~ 117 (136)
T PRK08577 43 EIHLEPIALPGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-----DIDLEELE 117 (136)
T ss_pred EEEEEEcCCCCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-----hhhHHHHH
Confidence 45554433 3457889999999999999999999999999998887763 454443444432221 12345566
Q ss_pred HHHhcc
Q 024087 92 QRLETD 97 (272)
Q Consensus 92 ~aL~~~ 97 (272)
+.|...
T Consensus 118 ~~L~~l 123 (136)
T PRK08577 118 EELKKL 123 (136)
T ss_pred HHHHcC
Confidence 666553
No 129
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=95.79 E-value=0.06 Score=38.96 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=36.7
Q ss_pred EEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEe
Q 024087 120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTD 164 (272)
Q Consensus 120 ev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd 164 (272)
-+...|+||-|++|..+|+++|+||.+.+...... ...-.|||.-
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~ 48 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF 48 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence 34557999999999999999999999997665544 5677888865
No 130
>PRK06635 aspartate kinase; Reviewed
Probab=95.63 E-value=0.29 Score=46.93 Aligned_cols=109 Identities=18% Similarity=0.277 Sum_probs=67.3
Q ss_pred CeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCC
Q 024087 26 DATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISSDG-GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS 103 (272)
Q Consensus 26 ~~t~V~V~-s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g-g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~ 103 (272)
+...|+|. -.++||+++++..+|.+.|++|.....+... |..--.|.|...+. +...+.|.+ +.....
T Consensus 261 ~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~---- 330 (404)
T PRK06635 261 DEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIG---- 330 (404)
T ss_pred CeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcC----
Confidence 44555554 3568999999999999999999976544322 23333455543111 112222333 111000
Q ss_pred ccceeeeCCCCceeEEEEEc---CCCcchHHHHHHHHHhCCCcEEEE
Q 024087 104 LRSSVGVMPTEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNA 147 (272)
Q Consensus 104 ~~~~v~~~~~~~~T~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A 147 (272)
... +....+...+.+.| .++||.+++|.++|++.|+||...
T Consensus 331 -~~~--i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 331 -AES--VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred -cce--EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 001 11223456788876 599999999999999999999875
No 131
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.58 E-value=0.065 Score=55.31 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=49.5
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCee-EEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRA-AAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv-~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
..+.|.|.+.||+|+|++|+.+|++.++||.++.+.+..++. ...|-+. +.+.+++..|-..|+.
T Consensus 625 ~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ie-------V~~~~~L~~i~~~Lr~ 690 (702)
T PRK11092 625 FIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLT-------ARDRVHLANIMRKIRV 690 (702)
T ss_pred eEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEE-------ECCHHHHHHHHHHHhC
Confidence 466899999999999999999999999999999987775433 3222222 2346778877777764
No 132
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=95.56 E-value=0.064 Score=39.13 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=38.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEe
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTD 164 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd 164 (272)
.|-++..|+||-|+++-.+|+.+|+|+.+.+-.....+ ..-.|||.-
T Consensus 2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~ 49 (74)
T cd04904 2 SLIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC 49 (74)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence 34556689999999999999999999999887666544 667788864
No 133
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.54 E-value=0.09 Score=40.22 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=48.9
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
.|.|-+...|+||-|+++-.+|+++|+|+.+.+-..... ...-.|||.- .|. .++ .+..+-+.|...|.
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~--~~~-~~~~~l~~L~~~~~ 83 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK--SAP-ALDPIIKSLRNDIG 83 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC--CCH-HHHHHHHHHHHHhC
Confidence 467777789999999999999999999999998866543 4677888864 464 233 33333344444443
No 134
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=95.44 E-value=0.09 Score=54.51 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=50.2
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC--CeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN--DRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g--~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~ 187 (272)
....|.|.+.||+|||++|+.+|++.++||..+.+.+.. +.+...|-|. +.+..++..|-.+|..+
T Consensus 665 ~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-------V~~~~~L~~l~~~L~~i 732 (743)
T PRK10872 665 YSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-------IYNLQVLGRVLGKLNQV 732 (743)
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-------ECCHHHHHHHHHHHhcC
Confidence 456899999999999999999999999999999987754 3333333332 23467788887777643
No 135
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=95.42 E-value=0.41 Score=45.81 Aligned_cols=107 Identities=18% Similarity=0.298 Sum_probs=67.6
Q ss_pred CCeEEEEEE---ecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087 25 ADATVIKVD---SVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (272)
Q Consensus 25 ~~~t~V~V~---s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~ 101 (272)
++...|+|. -.+++|++.++..+|.+.+++|..-........+ .|.|...+. ++..+.|.+.+....
T Consensus 258 ~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~I--s~~V~~~d~-----~~a~~~L~~~~~~~~--- 327 (401)
T TIGR00656 258 KNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSI--SLTVDETDA-----DEAVRALKDQSGAAG--- 327 (401)
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceE--EEEEeHHHH-----HHHHHHHHHHHHhcC---
Confidence 356778887 4678999999999999999999754432122111 355532110 123333433332110
Q ss_pred CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEE
Q 024087 102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN 146 (272)
Q Consensus 102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~ 146 (272)
...+ ....+...|.|.|. ++||+++++.++|.+.|+||..
T Consensus 328 ---~~~i--~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 328 ---LDRV--EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred ---CceE--EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 0011 12234567888875 7899999999999999999985
No 136
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.33 E-value=0.15 Score=36.53 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=42.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec---CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD---GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~---gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
+.|.-+|+||-|++++.+|+++|.||.+...... .+.-.-.+.+.-.. +...+.|.++|..
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~------~~~~~~i~~~L~~ 65 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMD------RSKENELIEELKA 65 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEec------chHHHHHHHHHhC
Confidence 5788899999999999999999999998866542 33333344443211 1125667777755
No 137
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=95.32 E-value=0.52 Score=36.56 Aligned_cols=64 Identities=13% Similarity=0.170 Sum_probs=44.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
+.-.+.+...|+||+|.++++.|+..|+||.+-...- +.+..=-+..+. + +...+.|.+-|...
T Consensus 7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~---~-----~~~i~Qi~kQL~KL 72 (96)
T PRK08178 7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN---D-----DQRLEQMISQIEKL 72 (96)
T ss_pred CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc---C-----chHHHHHHHHHhCC
Confidence 4456899999999999999999999999999887763 334222122222 1 13556666666554
No 138
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=95.14 E-value=0.25 Score=41.69 Aligned_cols=105 Identities=14% Similarity=0.203 Sum_probs=64.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccc
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS 106 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~ 106 (272)
.+.|...|+||.|++++++|+..|+||.+-.+.. . .|...-++.|.. ++...+.|.+-|..... . .
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-------d~~~i~qi~kQl~Kli~----V-~ 70 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-------DDKVLEQITKQLNKLVD----V-I 70 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-------CHHHHHHHHHHHhcCcc----E-E
Confidence 5788999999999999999999999999888774 2 466655556542 13456667776765422 0 0
Q ss_pred ee-eeC----CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEE
Q 024087 107 SV-GVM----PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNA 147 (272)
Q Consensus 107 ~v-~~~----~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A 147 (272)
+| .+. -..+-..+.|.+... =..+|.+.....+..|...
T Consensus 71 ~V~~~~~~~~v~rEl~LiKv~~~~~--~r~~i~~i~~~f~a~ivdv 114 (157)
T TIGR00119 71 KVSDLTESAIVERELCLVKVSAPGE--GRDEIIRLTNIFRGRIVDV 114 (157)
T ss_pred EEEecCCCcceeeEEEEEEEECCcc--CHHHHHHHHHHhCCEEEEe
Confidence 11 110 122345666766421 2345555555555555443
No 139
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.12 E-value=0.16 Score=36.04 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=37.6
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI 74 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~ 74 (272)
+.+.+..+|+||.|.+++++|.++|+||.+.+..- .++...-+|.+.
T Consensus 2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 57889999999999999999999999999887653 345555455554
No 140
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=95.07 E-value=0.29 Score=35.87 Aligned_cols=46 Identities=28% Similarity=0.354 Sum_probs=34.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI 74 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~ 74 (272)
+-+.+..+|+||.|+++..+|.++|+||.+-.... .+.|.+ +|+|.
T Consensus 2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~-~f~vd 49 (80)
T cd04905 2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEY-VFFID 49 (80)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceE-EEEEE
Confidence 34566778999999999999999999999886554 334554 45554
No 141
>PRK04435 hypothetical protein; Provisional
Probab=95.07 E-value=0.29 Score=40.69 Aligned_cols=74 Identities=15% Similarity=0.095 Sum_probs=53.3
Q ss_pred EEeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 19 IDNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 19 i~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
+..........+.+...|+||+|+++..+|++.|+||....... .+|.+--.|.+...+. ...++.|.+.|...
T Consensus 61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~i 135 (147)
T PRK04435 61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKLRNL 135 (147)
T ss_pred ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHcC
Confidence 33445567789999999999999999999999999999887765 3566555566553221 12456666666654
No 142
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=95.06 E-value=0.12 Score=53.28 Aligned_cols=66 Identities=24% Similarity=0.283 Sum_probs=49.4
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHHHHHHHHHHhccc
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPKRLSTIKELLFNV 187 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~ 187 (272)
..+.|.|.+.||+|+|++|+.+|++.++||.+..+.+..+. +.-.|-| .+.+-.++..|-.+|..+
T Consensus 609 f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~i-------eV~~~~~L~~ii~~L~~i 675 (683)
T TIGR00691 609 FIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITV-------EIKNYKHLLKIMLKIKTK 675 (683)
T ss_pred eEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEE-------EECCHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999876433 2222222 123467788777777643
No 143
>PRK08210 aspartate kinase I; Reviewed
Probab=94.92 E-value=0.76 Score=44.11 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=67.5
Q ss_pred CCeEEEEEEecCC-CcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCC
Q 024087 25 ADATVIKVDSVNK-HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPS 103 (272)
Q Consensus 25 ~~~t~V~V~s~Dr-pGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~ 103 (272)
++...|+|.+.+. ||.++++..+|.+.|++|.....++.. . .|.+.. +..+.+.+.|.... .
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~~--i--s~~v~~---------~~~~~a~~~l~~~~---~- 331 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPTE--V--VFTVSD---------EDSEKAKEILENLG---L- 331 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCce--E--EEEEcH---------HHHHHHHHHHHHhC---C-
Confidence 3566777877665 999999999999999999987554321 1 355432 11233344444421 0
Q ss_pred ccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEE
Q 024087 104 LRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVN 146 (272)
Q Consensus 104 ~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~ 146 (272)
.+. ...+...|.|.|. ++||+++++..+|.+.|++|..
T Consensus 332 ---~v~--~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 332 ---KPS--VRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred ---cEE--EeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 111 1234557777775 8999999999999999999974
No 144
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.91 E-value=0.094 Score=38.55 Aligned_cols=47 Identities=19% Similarity=0.226 Sum_probs=38.3
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEe
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTD 164 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd 164 (272)
.|-++.+|+||-|+++-.+|+.+|+|+.+.+-.... ....-.|||.-
T Consensus 2 sl~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~ 49 (74)
T cd04929 2 SVIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC 49 (74)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence 345566899999999999999999999998886654 34677888865
No 145
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=94.79 E-value=0.37 Score=35.76 Aligned_cols=61 Identities=10% Similarity=0.144 Sum_probs=42.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-e-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-S-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~-T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
.+.+...|+||.|.+++++|+..|+||.+-.+. | +.|..--++.+. |. ++..+.|.+-|..
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~~----~~~i~qi~kQL~K 66 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---CT----ENEATLLVSQLKK 66 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---CC----HHHHHHHHHHHhC
Confidence 588999999999999999999999999988876 3 334332223322 21 3455566666654
No 146
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=94.78 E-value=0.11 Score=44.68 Aligned_cols=35 Identities=11% Similarity=0.237 Sum_probs=32.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T 62 (272)
-.+.|...|+||+|.+++++|+..|+||.+-....
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~ 37 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP 37 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence 36899999999999999999999999999998875
No 147
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=94.74 E-value=0.36 Score=40.94 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=63.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-c-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccc
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-D-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRS 106 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~ 106 (272)
.+.|...|+||.|++++++|+..|+||.+-.+.. . .|...-++.|.. ++...+.|.+-|..... . .
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~-------~~~~i~qi~kQl~KLid----V-~ 71 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG-------DEQVIEQITKQLNKLID----V-L 71 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC-------CHHHHHHHHHHHhcccc----E-E
Confidence 5788999999999999999999999999887764 3 566554555542 13455666666655322 0 0
Q ss_pred ee-eeC----CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEE
Q 024087 107 SV-GVM----PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNA 147 (272)
Q Consensus 107 ~v-~~~----~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A 147 (272)
+| .+. -..+-..+.|.+.. .=-.+|.+.....+..|...
T Consensus 72 ~V~~~~~~~~v~rEl~LiKv~~~~--~~r~~i~~i~~~f~a~ivdv 115 (161)
T PRK11895 72 KVVDLTEEAHVERELALVKVRASG--ENRAEILRLADIFRAKIVDV 115 (161)
T ss_pred EEEecCCcchhheEEEEEEEECCc--ccHHHHHHHHHHhCCEEEEe
Confidence 11 110 12234456666532 11346666655555555544
No 148
>PRK11899 prephenate dehydratase; Provisional
Probab=94.69 E-value=0.17 Score=46.51 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=46.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCCCHH
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIKDPK 175 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~d~~ 175 (272)
-|.|-+..+|+||.|+++-.+|+++|+|+.+.+.--.+.+ ..-+|||.- .|. ..|+.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~--eg~-~~d~~ 251 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI--EGH-PEDRN 251 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE--ECC-CCCHH
Confidence 5778888899999999999999999999999998766544 777888854 464 34554
No 149
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=94.59 E-value=0.17 Score=52.00 Aligned_cols=68 Identities=25% Similarity=0.347 Sum_probs=52.3
Q ss_pred CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
....+.|.|.+.||+|||.+|+++|++.++||.+....+..++.+.+.+-.. +.+-.++..|-.+|..
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~l~~ 691 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLARLKQ 691 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHHHhc
Confidence 3457789999999999999999999999999999988887666555443322 2346677777777664
No 150
>PRK07334 threonine dehydratase; Provisional
Probab=94.40 E-value=0.3 Score=46.97 Aligned_cols=64 Identities=14% Similarity=0.123 Sum_probs=47.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-----CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-----GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-----gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
+.|.|.+.||+|+|.+++.+|++.+.||.+....+. ++.+.-.|.|.- .+.+.++.|.+.|...
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V------~d~~~L~~vi~~Lr~~ 395 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET------RDAAHLQEVIAALRAA 395 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe------CCHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999988764 455544454432 2234556666666553
No 151
>PRK06291 aspartate kinase; Provisional
Probab=94.29 E-value=1.2 Score=43.90 Aligned_cols=109 Identities=11% Similarity=0.196 Sum_probs=71.3
Q ss_pred CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087 25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (272)
Q Consensus 25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~ 101 (272)
++...|+|.+. +.+|+++++.++|.+.|++|.--...+..-.+ .|.|...+- +...+.|.+.+.....
T Consensus 319 ~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sI--sf~V~~~d~-----~~av~~L~~~~~~~~~-- 389 (465)
T PRK06291 319 KNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNI--SLVVDEADL-----EKALKALRREFGEGLV-- 389 (465)
T ss_pred CCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceE--EEEEeHHHH-----HHHHHHHHHHHHHhcC--
Confidence 35678888765 68999999999999999999876554433222 355543211 1234445554443110
Q ss_pred CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087 102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
..+ .-..+...|.+.|. +++|+++++..+|.+.|++|....
T Consensus 390 ----~~i--~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is 433 (465)
T PRK06291 390 ----RDV--TFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS 433 (465)
T ss_pred ----cce--EEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence 011 11234557888886 799999999999999999998543
No 152
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=94.23 E-value=0.24 Score=43.51 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=37.3
Q ss_pred CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC
Q 024087 111 MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154 (272)
Q Consensus 111 ~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~ 154 (272)
+-..+...|-+.-.||||.+..|+.+|.++|+||....+.....
T Consensus 143 d~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~ 186 (208)
T TIGR00719 143 EFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDI 186 (208)
T ss_pred EecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCC
Confidence 34455667778889999999999999999999999999987653
No 153
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.10 E-value=0.34 Score=34.44 Aligned_cols=59 Identities=22% Similarity=0.257 Sum_probs=39.8
Q ss_pred EEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087 120 EFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (272)
Q Consensus 120 ev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~ 185 (272)
.+.-+||||=|..+.+++.+ |.||...+=...+...+.++..-. . .+++..+.+.+.|.
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie-~-----~~~~~~~~i~~~L~ 60 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ-V-----PDREDLAELKERLE 60 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE-e-----CCHHHHHHHHHHHH
Confidence 56789999999999999999 999988765444433333443333 1 23456666666654
No 154
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.04 E-value=0.46 Score=49.42 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=49.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec--CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~--gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
...|.|.+.||+|+|.+++.+|++.++||.+..+.+. ++.+.-.|.|.- .+-..+..|...|...
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV------~~~~~L~~l~~~L~~i 732 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI------YNLQVLGRVLGKLNQV 732 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE------CCHHHHHHHHHHHhcC
Confidence 3588899999999999999999999999999998874 566655565542 2234566676666654
No 155
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=93.84 E-value=0.8 Score=36.95 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=46.4
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.++-|.-.|+||=|+.++.+|.+.++|+--+|-++ ....++-++.+-| +++..++|+..
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed-----------~d~~~~aLed~ 129 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED-----------IDRAIKALEDA 129 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH-----------HHHHHHHHHHc
Confidence 47889999999999999999999999999999986 4567775555433 35556666654
No 156
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=93.82 E-value=0.54 Score=34.87 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=43.8
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
..+.+...|+||.|.++++++...|+||.+-.+.. +++..--++.| . +. ...+.|.+-|..
T Consensus 4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v-~-~~------~~i~ql~kQL~K 66 (76)
T PRK11152 4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV-A-SE------RPIDLLSSQLNK 66 (76)
T ss_pred EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE-C-CC------chHHHHHHHHhc
Confidence 46889999999999999999999999999998875 44544334444 2 22 234555555544
No 157
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=93.66 E-value=0.25 Score=42.20 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=36.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCC-EEEEEEEE
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGG-WFMDVFNV 73 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg-~~~dvF~V 73 (272)
-+.+...|+||.|.++++++++.|.||..|+.+. .+| .+.--|.+
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 4678999999999999999999999999999997 344 44433334
No 158
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=93.45 E-value=0.66 Score=48.02 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=49.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.+.|.|.+.||+|+|.+++.+|+..+.||.+....+. ++.+.-.|.|.- .+-+.++.|...|...
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~Lr~i 691 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKIRVM 691 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHHhCC
Confidence 4478899999999999999999999999999998775 456555555542 2234566666666654
No 159
>PRK06382 threonine dehydratase; Provisional
Probab=93.43 E-value=0.48 Score=45.69 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (272)
Q Consensus 113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~ 150 (272)
....+.|+|.-+||||-|.+|+++|.++|+||.+....
T Consensus 327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVD 364 (406)
T ss_pred cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 45678999999999999999999999999999887764
No 160
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.39 E-value=0.23 Score=39.66 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=40.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEe
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTD 164 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd 164 (272)
.|.|-+..+|+||-|++|-.+|+.+|+|+.+.+.-....+ ..-.|||.-
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi 90 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC 90 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence 4677777799999999999999999999999988776544 556777754
No 161
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.25 E-value=0.23 Score=47.56 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=41.5
Q ss_pred ceeEEEEEcC-CCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 115 EHTSIEFTGT-DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 115 ~~T~Iev~~~-DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
..+.|-+.-+ |+||.|++|+.+|+++|+||.+-++ .+.....-.|||.-
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i~~ 343 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRIGF 343 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEEEE
Confidence 5677788886 9999999999999999999999999 55555665699865
No 162
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=93.03 E-value=0.53 Score=43.32 Aligned_cols=54 Identities=20% Similarity=0.266 Sum_probs=44.5
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCC
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYA 170 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~ 170 (272)
..|.|-+..+|+||.|+++-.+|+.+|+|..+.+..-.+.+ ..=+|||-- .|..
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~--eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI--EGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE--ecCc
Confidence 47888889999999999999999999999999998665544 677777743 4554
No 163
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=92.85 E-value=1.2 Score=32.07 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=31.3
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEE
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVF 71 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF 71 (272)
+.+..+|+||-|+++..+|.++|+||.+-.-.- ...|-+..|
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~ 45 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFF 45 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEE
Confidence 345568999999999999999999999884332 235555433
No 164
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=92.85 E-value=0.36 Score=41.21 Aligned_cols=47 Identities=15% Similarity=0.381 Sum_probs=38.7
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
.|.+.+.++||.|.+++-+++++|.||..|+-...++--...+|..-
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi 50 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI 50 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence 57788999999999999999999999999998777664444556543
No 165
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=92.77 E-value=0.077 Score=39.85 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=28.0
Q ss_pred EEEEEcCC-CcchHHHHHHHHHhCCCcEEEEEE
Q 024087 118 SIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEI 149 (272)
Q Consensus 118 ~Iev~~~D-RpGLL~~It~vL~~~g~~I~~A~i 149 (272)
+|.|.|.| ++|+++.|+++|+++|+||....-
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~ 33 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR 33 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence 36789999 999999999999999999965443
No 166
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=92.49 E-value=1.2 Score=46.14 Aligned_cols=65 Identities=12% Similarity=0.138 Sum_probs=48.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.+.|.|.+.||+|+|++++.+|+..+.||.+..+.+. ++.+.-.|.|.- .+-..+..|...|...
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~ii~~L~~i 675 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI------KNYKHLLKIMLKIKTK 675 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE------CCHHHHHHHHHHHhCC
Confidence 4588899999999999999999999999999999875 466554455442 2234556666666553
No 167
>PRK09034 aspartate kinase; Reviewed
Probab=92.23 E-value=3.1 Score=40.84 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=68.9
Q ss_pred CeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCC
Q 024087 26 DATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (272)
Q Consensus 26 ~~t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~ 102 (272)
+.+.|++.+ .+++|+++++..+|.+.|++|.-- .+. ..-+ .|.|...+-. ...+..+.+.|..... .
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i--~ss-~~si-s~~v~~~~~~----~a~~~~l~~el~~~~~--~ 376 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM--PSG-IDDL-SIIIRERQLT----PKKEDEILAEIKQELN--P 376 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE--cCC-CcEE-EEEEeHHHhh----HHHHHHHHHHHHHhhC--C
Confidence 456777765 568999999999999999999875 222 2112 4666543211 0111233333332211 0
Q ss_pred CccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (272)
Q Consensus 103 ~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i~T 151 (272)
.. +....+...|.+.|. ++||+++++..+|.+.|+||....-.+
T Consensus 377 ---~~--I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~ 423 (454)
T PRK09034 377 ---DE--LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS 423 (454)
T ss_pred ---ce--EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 01 112234567888654 789999999999999999998764333
No 168
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.07 E-value=0.91 Score=32.21 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=40.4
Q ss_pred EEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 31 KVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 31 ~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.|.-+||||-|.+++.+|+. |.||..-+-...+-....++....-. +++..+.|.++|...
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~-----~~~~~~~i~~~L~~~ 62 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVP-----DREDLAELKERLEAL 62 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeC-----CHHHHHHHHHHHHHc
Confidence 57789999999999999999 99999876543221122233322222 234667777777664
No 169
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.96 E-value=0.8 Score=44.35 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=47.0
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHH
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIK 181 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~ 181 (272)
....|-+.-.|+||.++.|+.+|+++|+||...++++.|+.+.-+|-+ | + ++ +++.++.|+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~-D---~-~~-~~~~~~~i~ 397 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV-D---A-DY-AEEALDALK 397 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe-C---C-CC-cHHHHHHHH
Confidence 456777899999999999999999999999999999988666554433 3 2 43 245556665
No 170
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.91 E-value=0.24 Score=47.94 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=42.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEE
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNV 73 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V 73 (272)
+...+.+.-.|+||.++.++.+|+++|+||..-+..+.++.++-+|.+
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 667888899999999999999999999999999998888888765544
No 171
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=91.72 E-value=7.8 Score=37.67 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=66.7
Q ss_pred CCeEEEEEEecCC--CcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCC
Q 024087 25 ADATVIKVDSVNK--HGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (272)
Q Consensus 25 ~~~t~V~V~s~Dr--pGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~ 102 (272)
++...|+|.+..- +|++.++..+|.+.|++|......+...- + .|.|...+- +...+.|.. +.....
T Consensus 300 ~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se~s-I-s~~I~~~~~-----~~a~~~L~~-~~~~~~--- 368 (441)
T TIGR00657 300 RNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETS-I-SFTVDKEDA-----DQAKTLLKS-ELNLSA--- 368 (441)
T ss_pred CCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCce-E-EEEEEHHHH-----HHHHHHHHH-HHHhcC---
Confidence 3566777766443 79999999999999999987654333211 1 344443210 111222211 111100
Q ss_pred CccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087 103 SLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 103 ~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
.. .+....+.+.|.+.|. ++||++++|.++|++.|+||....
T Consensus 369 --~~--~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 369 --LS--SVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred --cc--eEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 00 1122345667888654 789999999999999999997765
No 172
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=91.68 E-value=3.7 Score=43.35 Aligned_cols=113 Identities=16% Similarity=0.253 Sum_probs=72.2
Q ss_pred CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087 25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (272)
Q Consensus 25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~ 101 (272)
++.+.|+|.+. .+||++.++..+|.+.|++|.-...++.. .-+ .|.|...+. +...+.|.+.+.....
T Consensus 313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe-~sI-sf~V~~~d~-----~~av~~L~~~f~~el~-- 383 (819)
T PRK09436 313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE-YSI-SFCVPQSDA-----AKAKRALEEEFALELK-- 383 (819)
T ss_pred CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCC-ceE-EEEEeHHHH-----HHHHHHHHHHHHHHhc--
Confidence 46778888765 68999999999999999999766554322 212 355543211 1233444444432111
Q ss_pred CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087 102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
......+ ....+...|.+.|. ++||+++++..+|.+.|+||....
T Consensus 384 ~~~~~~i--~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is 431 (819)
T PRK09436 384 EGLLEPL--EVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA 431 (819)
T ss_pred cCCcceE--EEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 0000011 12234667888886 789999999999999999998654
No 173
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=91.44 E-value=1.2 Score=42.99 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=45.5
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee-CCeeEEEEEEEeCCCCCCCCCHH
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH-NDRAAAVVHVTDHSTGYAIKDPK 175 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~-g~rv~dvFyVtd~~~G~~i~d~~ 175 (272)
..|.|-+...|+||.|+++-.+|+.+|+|+.+.+---. +....-+|||.- .|. ..|+.
T Consensus 296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~--eg~-~~d~~ 354 (386)
T PRK10622 296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV--QAN-LRSAE 354 (386)
T ss_pred CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE--eCC-CCCHH
Confidence 36667777889999999999999999999999998744 445788888854 464 34443
No 174
>PLN02551 aspartokinase
Probab=91.40 E-value=7.2 Score=39.07 Aligned_cols=112 Identities=13% Similarity=0.127 Sum_probs=67.2
Q ss_pred CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087 25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (272)
Q Consensus 25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~ 101 (272)
++.+.|+|.+. +.+|+++++...|.++|++|.--. |...- -.|.|...+-.. .+...+.+++.+.....
T Consensus 364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe~s--Is~~v~~~~~~~--~~~i~~~l~~l~~el~~-- 435 (521)
T PLN02551 364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVS--ISLTLDPSKLWS--RELIQQELDHLVEELEK-- 435 (521)
T ss_pred CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccCCE--EEEEEehhHhhh--hhhHHHHHHHHHHHhhc--
Confidence 45678888776 589999999999999999998663 32211 135554322111 01111122222111100
Q ss_pred CCccceeeeCCCCceeEEEEEcC--CCcchHHHHHHHHHhCCCcEEEEEE
Q 024087 102 PSLRSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEI 149 (272)
Q Consensus 102 ~~~~~~v~~~~~~~~T~Iev~~~--DRpGLL~~It~vL~~~g~~I~~A~i 149 (272)
...+. -..+...|.|.|. .+||+++++..+|.+.|+||....-
T Consensus 436 ---~~~V~--v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsq 480 (521)
T PLN02551 436 ---IAVVN--LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQ 480 (521)
T ss_pred ---CCeEE--EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEe
Confidence 01111 1234556777765 6899999999999999999976543
No 175
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=91.39 E-value=0.31 Score=34.63 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=34.1
Q ss_pred ceeEEEEEcC----CCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 115 EHTSIEFTGT----DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 115 ~~T~Iev~~~----DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
....|.|.|+ |.||+++.+++.|++.|++|.... |+ ..+.|.|..
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S~---~~~~ilV~~ 53 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--SE---ISISILVKE 53 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--ES---SEEEEEEEG
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--Ee---eeEEEEEeH
Confidence 3557777777 899999999999999999997765 43 356666654
No 176
>PRK06349 homoserine dehydrogenase; Provisional
Probab=91.38 E-value=0.48 Score=46.04 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=42.3
Q ss_pred CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
....+.|.+...|+||.|++|+.+|.++|++|.+.......+....++++|+
T Consensus 345 ~~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~ 396 (426)
T PRK06349 345 IESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH 396 (426)
T ss_pred hceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence 3446789999999999999999999999999998765443335567788887
No 177
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=91.15 E-value=1.2 Score=39.03 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=40.1
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV 73 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V 73 (272)
....+.+.-.|+||.+..+..+|.++|+||-..++.. .+|.++-+..|
T Consensus 147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 3445667779999999999999999999999999986 57888766554
No 178
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=90.93 E-value=1.6 Score=44.99 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=47.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
-...|.|.+.||+|+|.+++++|+..+.||.+....++ ++.+.-.|.+.- .+-..+..|...|...
T Consensus 626 f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v------~n~~~L~~i~~~l~~~ 692 (701)
T COG0317 626 YPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV------KNLNHLGRVLARLKQL 692 (701)
T ss_pred eEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE------CcHHHHHHHHHHHhcC
Confidence 45689999999999999999999999999999998885 444433333332 2234556666666553
No 179
>PRK09181 aspartate kinase; Validated
Probab=90.92 E-value=7.6 Score=38.46 Aligned_cols=104 Identities=13% Similarity=0.222 Sum_probs=67.1
Q ss_pred CeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCC
Q 024087 26 DATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAP 102 (272)
Q Consensus 26 ~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~ 102 (272)
+.+.|+|.+. +.+|++.++..+|.+.|++|. .+.+... --.|.|... . ...+.+.+.|..... .
T Consensus 328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~~--sis~~v~~~--~-----~~~~~~~~~L~~~~~--~ 394 (475)
T PRK09181 328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNAN--TITHYLWGS--L-----KTLKRVIAELEKRYP--N 394 (475)
T ss_pred CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecCc--EEEEEEcCC--h-----HHHHHHHHHHHHhcC--C
Confidence 6777888655 689999999999999999998 3444321 123555432 1 112333333433211 0
Q ss_pred CccceeeeCCCCceeEEEEEcCC--CcchHHHHHHHHHhCCCcEEEEE
Q 024087 103 SLRSSVGVMPTEEHTSIEFTGTD--RPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 103 ~~~~~v~~~~~~~~T~Iev~~~D--RpGLL~~It~vL~~~g~~I~~A~ 148 (272)
..+. ..+..+|.+.|.. +||+.+++..+|.+.|+||....
T Consensus 395 ---~~i~---~~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~ 436 (475)
T PRK09181 395 ---AEVT---VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH 436 (475)
T ss_pred ---ceEE---ECCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence 0111 1345678888765 89999999999999999997654
No 180
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.85 E-value=2 Score=32.00 Aligned_cols=30 Identities=23% Similarity=0.510 Sum_probs=24.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEE
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEI 149 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i 149 (272)
++.+.-+||||=|.+++.+|. +.||....-
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y 32 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNY 32 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEE
Confidence 578889999999999999999 556654433
No 181
>PRK06545 prephenate dehydrogenase; Validated
Probab=90.64 E-value=1 Score=42.58 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=43.6
Q ss_pred CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
...++.|.|.-+||||-|++|+..|.+.|+||.+.+|.-..+....++.+.-
T Consensus 287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~ 338 (359)
T PRK06545 287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF 338 (359)
T ss_pred CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence 3567899999999999999999999999999999999665566666666654
No 182
>PRK07431 aspartate kinase; Provisional
Probab=90.52 E-value=6.2 Score=39.87 Aligned_cols=111 Identities=16% Similarity=0.212 Sum_probs=68.1
Q ss_pred CCeEEEEEE-ecCCCcHHHHHHHHHHhCCceEEEEEEEe-cC--CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCC
Q 024087 25 ADATVIKVD-SVNKHGILLQVIQVLNDVNLVIKKAYISS-DG--GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASF 100 (272)
Q Consensus 25 ~~~t~V~V~-s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~g--g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~ 100 (272)
++...|++. .++++|+++++...|+++|++|..-..+. .+ |..--.|.+...+- .....+.+.|....+
T Consensus 437 ~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~------~~~~~~l~~l~~~~~- 509 (587)
T PRK07431 437 RNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDR------EAAQKVLRELAKQLP- 509 (587)
T ss_pred CCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHH------HHHHHHHHHHHHhcC-
Confidence 456666664 56789999999999999999998765532 12 22222355443110 111222222322111
Q ss_pred CCCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087 101 APSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 101 ~~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
. .++ .-..+...|.+.|. .+||+++++.++|.+.|++|....
T Consensus 510 -~---~~i--~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~ 554 (587)
T PRK07431 510 -G---AEV--EDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA 554 (587)
T ss_pred -C---ceE--EEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence 0 011 11234567888886 889999999999999999996654
No 183
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.39 E-value=3.8 Score=31.24 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=41.0
Q ss_pred EeCCCCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCC
Q 024087 20 DNNTCADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGK 79 (272)
Q Consensus 20 ~n~~~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~ 79 (272)
++....+.+-+.+..+|+||-|+++..+|.+.|+|+.+-.-.- ...|-+ .|+|. .+|.
T Consensus 7 ~~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y-~FfVD-ieg~ 66 (90)
T cd04931 7 ENSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEY-EFFIN-LDKK 66 (90)
T ss_pred cccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceE-EEEEE-EEcC
Confidence 3444445577777779999999999999999999998766442 345555 35554 3454
No 184
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=90.18 E-value=1.5 Score=30.96 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 024087 36 NKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV 73 (272)
Q Consensus 36 DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V 73 (272)
|+||.|.++++++...|+||.+-.+.. +++..--++.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v 40 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV 40 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE
Confidence 789999999999999999999999986 55654433333
No 185
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=90.04 E-value=0.2 Score=37.61 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=28.1
Q ss_pred EEEEEecC-CCcHHHHHHHHHHhCCceEEEEE
Q 024087 29 VIKVDSVN-KHGILLQVIQVLNDVNLVIKKAY 59 (272)
Q Consensus 29 ~V~V~s~D-rpGLl~~v~~vL~d~gl~I~~A~ 59 (272)
+|+|.+++ +.|++++++++|+++|+||.+-+
T Consensus 1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~ 32 (84)
T cd04871 1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIR 32 (84)
T ss_pred CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence 48999999 99999999999999999997644
No 186
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=89.33 E-value=1.1 Score=38.10 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=49.1
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEE-EeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEI-WTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i-~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
.+.+.-.|.||.|+.++..|+..|.||.+..+ .|......-+=.++. | |+..+++|.++|......
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g----~~~~~EQi~kQL~kLidV 72 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---G----DEQVLEQIIKQLNKLIDV 72 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---C----CcchHHHHHHHHHhhccc
Confidence 67788899999999999999999999999887 455544444444544 3 345667787787765544
No 187
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=88.93 E-value=0.53 Score=33.43 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=31.1
Q ss_pred CCCeEEEEEEec----CCCcHHHHHHHHHHhCCceEEEEE
Q 024087 24 CADATVIKVDSV----NKHGILLQVIQVLNDVNLVIKKAY 59 (272)
Q Consensus 24 ~~~~t~V~V~s~----DrpGLl~~v~~vL~d~gl~I~~A~ 59 (272)
+.++..|+|.++ |.||+++++.+.|++.|++|+-..
T Consensus 3 ~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 3 EEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp ESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred cCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 356889999998 799999999999999999998666
No 188
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=88.83 E-value=2.7 Score=39.88 Aligned_cols=37 Identities=24% Similarity=0.332 Sum_probs=32.1
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (272)
Q Consensus 114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~ 150 (272)
.....|.|.-+||||.|++++.++++.|.||....-.
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 3445899999999999999999999999999887543
No 189
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.30 E-value=0.74 Score=34.04 Aligned_cols=47 Identities=13% Similarity=0.314 Sum_probs=36.1
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cC--CEEEEEEEEEcC
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DG--GWFMDVFNVIDC 76 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~g--g~~~dvF~V~d~ 76 (272)
|.+.++-||-.|++++-+|..+|.-|++|.|.. .+ .|=+--|.+.+.
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~ 53 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEH 53 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCC
Confidence 456788999999999999999999999999974 33 344434444443
No 190
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.67 E-value=1.6 Score=43.64 Aligned_cols=66 Identities=15% Similarity=0.298 Sum_probs=45.9
Q ss_pred CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHH
Q 024087 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 182 (272)
Q Consensus 113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~ 182 (272)
..+.+.+=+.-.|+||.+..|+.+|.+.++||....+......-..+..+ . ...++. ++.++.|++
T Consensus 449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i-~--~D~~v~-~~~l~~i~~ 514 (526)
T PRK13581 449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVL-S--VDDPVP-EEVLEELRA 514 (526)
T ss_pred eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEE-E--CCCCCC-HHHHHHHhc
Confidence 34555566667999999999999999999999999887654333333323 2 244554 566777764
No 191
>PRK08198 threonine dehydratase; Provisional
Probab=87.52 E-value=4.3 Score=38.92 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=33.6
Q ss_pred CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (272)
Q Consensus 113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~ 150 (272)
......+.|.-+||||-|+++..++.+.|.||....-.
T Consensus 324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD 361 (404)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence 44567899999999999999999999999999987654
No 192
>PRK07431 aspartate kinase; Provisional
Probab=87.51 E-value=8.6 Score=38.84 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=63.9
Q ss_pred ecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCC
Q 024087 34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMP 112 (272)
Q Consensus 34 s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~ 112 (272)
-.+++|+++++...|.+.|++|-.-..++ ..+..--.|.|...+- +...+.|++ |..... . ..+ .-
T Consensus 278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~--~---~~i--~~ 344 (587)
T PRK07431 278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALG--G---AEV--LV 344 (587)
T ss_pred CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcC--C---CcE--EE
Confidence 46789999999999999999998776543 2222222466643211 111222222 221110 0 111 11
Q ss_pred CCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087 113 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 113 ~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
..+...|.+.|. ++||+++++..+|++.|++|....
T Consensus 345 ~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~ 383 (587)
T PRK07431 345 ETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS 383 (587)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 234567888886 799999999999999999996655
No 193
>PRK09084 aspartate kinase III; Validated
Probab=87.41 E-value=12 Score=36.64 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=63.4
Q ss_pred CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087 25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (272)
Q Consensus 25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~ 101 (272)
++...|+|.+. +.+|++.++..+|.+.|++|.--.. +.. --.|.|...+-..-......+.+.+.|...
T Consensus 304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s-se~---sIs~~i~~~~~~~~~~~~~~~~l~~el~~~---- 375 (448)
T PRK09084 304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT-SEV---SVSLTLDTTGSTSTGDTLLTQALLTELSQL---- 375 (448)
T ss_pred CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec-cCc---EEEEEEechhhhhhhhHHHHHHHHHHHhcC----
Confidence 46778888765 6899999999999999999986652 221 124555532211100011223343334321
Q ss_pred CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCC
Q 024087 102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLH 141 (272)
Q Consensus 102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g 141 (272)
..+.+ ..+...|.+.|. ++||+++++..+|.+.+
T Consensus 376 ----~~i~~--~~~va~IsvvG~gm~~~~gv~arif~aL~~~n 412 (448)
T PRK09084 376 ----CRVEV--EEGLALVALIGNNLSKACGVAKRVFGVLEPFN 412 (448)
T ss_pred ----CeEEE--ECCeEEEEEECCCcccCcChHHHHHHHHHhCC
Confidence 11111 234567888886 79999999999998743
No 194
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=86.90 E-value=3.2 Score=30.00 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=33.2
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCC
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDG 78 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G 78 (272)
+.+..+|+||-|+++.+.|...|+|+.+-.-.- ...|-+ .|+|. .+|
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y-~Ffvd-~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEY-EFFVD-CEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceE-EEEEE-EEc
Confidence 444558999999999999999999998765432 344555 34443 344
No 195
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=86.39 E-value=6.7 Score=26.77 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=26.8
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEE
Q 024087 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEI 149 (272)
Q Consensus 118 ~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i 149 (272)
.|.+.|. +.||++++|.++|.+.|++|....-
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 5666664 8899999999999999999977643
No 196
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=86.36 E-value=1.4 Score=40.00 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=32.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T 151 (272)
..+|.+.-.|-||+|++|+-+|+..|.||.+.-+--
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 347888899999999999999999999999987754
No 197
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.98 E-value=7.3 Score=26.72 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=27.8
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (272)
Q Consensus 118 ~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i~T 151 (272)
.|.+.|. ++||+++++.++|.+.|++|....-.+
T Consensus 3 ~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 3 ILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 5666665 789999999999999999997764444
No 198
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.79 E-value=6.6 Score=29.13 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=38.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
++.|.-+|+||-|.+++.+|. +.||....-.. ..+.+.-.+.+.-+++ ++..+.+.++|...
T Consensus 3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~~ 65 (85)
T cd04906 3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG-----AEELAELLEDLKSA 65 (85)
T ss_pred EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHHC
Confidence 578889999999999999999 66776433332 2232222222322221 24567777788764
No 199
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=84.98 E-value=19 Score=35.41 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=69.4
Q ss_pred CCeEEEEEEecC---CCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087 25 ADATVIKVDSVN---KHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (272)
Q Consensus 25 ~~~t~V~V~s~D---rpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~ 101 (272)
++.+.|+|.+.. ++|.++++.+.|.+.|++|..-.......+ -.|.|...+. +...+.+++.......
T Consensus 305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~-- 375 (447)
T COG0527 305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA-- 375 (447)
T ss_pred CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence 466777776654 459999999999999999976654443333 2466654221 1233444444433210
Q ss_pred CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087 102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
++. .....-.|.+.|. ..||..+.+.++|++.++||....
T Consensus 376 -----~v~--~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is 418 (447)
T COG0527 376 -----EVE--VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS 418 (447)
T ss_pred -----eEE--eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence 111 1122335666654 679999999999999999998876
No 200
>PRK11899 prephenate dehydratase; Provisional
Probab=84.65 E-value=7.1 Score=35.97 Aligned_cols=51 Identities=14% Similarity=0.027 Sum_probs=37.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cC-CEEEEEEEEEcCCCC
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DG-GWFMDVFNVIDCDGK 79 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~g-g~~~dvF~V~d~~G~ 79 (272)
.|.+.+..+|+||.|+++.++|++.|+|+.+-.-.- .+ .|-+ .|+|. -+|.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y-~F~id-~eg~ 246 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTAT-QFYAD-IEGH 246 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceE-EEEEE-EECC
Confidence 566666778999999999999999999998765442 23 3433 56654 5564
No 201
>PLN02317 arogenate dehydratase
Probab=84.61 E-value=6 Score=38.11 Aligned_cols=56 Identities=27% Similarity=0.284 Sum_probs=44.1
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe---------------eEEEEEEEeCCCCCCCCCH
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR---------------AAAVVHVTDHSTGYAIKDP 174 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r---------------v~dvFyVtd~~~G~~i~d~ 174 (272)
-|.|-+.-.|+||.|+++-.+|+..|+|+.+.+-.....+ ..-.|||.- .|.. .|+
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~--eg~~-~d~ 353 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDF--EASM-ADP 353 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEE--EcCc-CCH
Confidence 4778888899999999999999999999999997666544 456888854 3543 444
No 202
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=84.23 E-value=2.3 Score=42.50 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=44.5
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHH
Q 024087 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKE 182 (272)
Q Consensus 114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~ 182 (272)
.+++.+=+.-.||||.+..|+.+|.++++||....+......-..+..+ . ...++. ++.++.|++
T Consensus 449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i-~--~D~~v~-~~~l~~i~~ 513 (525)
T TIGR01327 449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLL-S--LDQPVP-DEVLEEIKA 513 (525)
T ss_pred cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEE-E--cCCCCC-HHHHHHHhc
Confidence 4455555666899999999999999999999998887654332222222 2 134554 556677764
No 203
>PRK06382 threonine dehydratase; Provisional
Probab=84.02 E-value=8.1 Score=37.23 Aligned_cols=67 Identities=16% Similarity=0.174 Sum_probs=47.4
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE----e-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS----S-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~----T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
...+.+.|.-+|+||-|.+++.+|.++|.||.+-... . ..+...-+|.|... ++...+.|.+.|...
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~------~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR------GQDHLDRILNALREM 399 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC------CHHHHHHHHHHHHHC
Confidence 4567899999999999999999999999999877654 1 23444445555432 123445667777554
No 204
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=83.57 E-value=1.3 Score=37.39 Aligned_cols=35 Identities=20% Similarity=0.335 Sum_probs=28.2
Q ss_pred CeEEEEE--EecCCCcHHHHHHHHHHhCCceEEEEEE
Q 024087 26 DATVIKV--DSVNKHGILLQVIQVLNDVNLVIKKAYI 60 (272)
Q Consensus 26 ~~t~V~V--~s~DrpGLl~~v~~vL~d~gl~I~~A~I 60 (272)
|+-+|.+ ..++.||+++.+++.+++.|++|..+-.
T Consensus 92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CCeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 4445554 5678999999999999999999997653
No 205
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=82.07 E-value=2.3 Score=35.99 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=28.6
Q ss_pred eeEEEEEc--CCCcchHHHHHHHHHhCCCcEEEEEE
Q 024087 116 HTSIEFTG--TDRPGLFSEVCAVLADLHCNVVNAEI 149 (272)
Q Consensus 116 ~T~Iev~~--~DRpGLL~~It~vL~~~g~~I~~A~i 149 (272)
.-+||+.. .+-||+|+.++..++++||+|..+-.
T Consensus 93 ~gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~ 128 (167)
T COG2150 93 LGVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS 128 (167)
T ss_pred CeEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence 34777776 45699999999999999999999854
No 206
>PRK06545 prephenate dehydrogenase; Validated
Probab=81.85 E-value=5.7 Score=37.56 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=35.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62 (272)
Q Consensus 25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T 62 (272)
..+..|.|.-+|+||-++++++.|...|+||.+-+|.-
T Consensus 288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~ 325 (359)
T PRK06545 288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE 325 (359)
T ss_pred CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence 56789999999999999999999999999999999964
No 207
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.55 E-value=6.6 Score=28.66 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=34.6
Q ss_pred EEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCC
Q 024087 30 IKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGK 79 (272)
Q Consensus 30 V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~ 79 (272)
+.+..+|+||-|+++-.+|...|+|+.+-.-.. ...|-+. |+|. .+|.
T Consensus 3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~-F~id-~e~~ 52 (74)
T cd04929 3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFE-IFVD-CECD 52 (74)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEE-EEEE-EEcC
Confidence 344458999999999999999999998766543 4556654 4443 3454
No 208
>PRK11898 prephenate dehydratase; Provisional
Probab=81.33 E-value=8 Score=35.56 Aligned_cols=56 Identities=20% Similarity=0.166 Sum_probs=41.9
Q ss_pred eeEEEEEcCC-CcchHHHHHHHHHhCCCcEEEEEEEeeCC-eeEEEEEEEeCCCCCCCCCH
Q 024087 116 HTSIEFTGTD-RPGLFSEVCAVLADLHCNVVNAEIWTHND-RAAAVVHVTDHSTGYAIKDP 174 (272)
Q Consensus 116 ~T~Iev~~~D-RpGLL~~It~vL~~~g~~I~~A~i~T~g~-rv~dvFyVtd~~~G~~i~d~ 174 (272)
.|.|-+.-.+ +||.|+++-.+|+++|+|+.+.+..-..+ ...-.|||.- +|. ..++
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~--eg~-~~~~ 253 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDV--EGH-IDDV 253 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEE--Ecc-CCCH
Confidence 4566666654 69999999999999999999998866543 3667888854 464 3444
No 209
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=81.25 E-value=1.8 Score=43.11 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=37.2
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
.+||.+.||.|+..+|..+|...++|+...+|...| .+|+.-
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~-----~~~~~~ 43 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG-----RIYLNF 43 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC-----eEEEeC
Confidence 589999999999999999999999999999997754 367754
No 210
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=81.08 E-value=27 Score=37.12 Aligned_cols=104 Identities=11% Similarity=0.205 Sum_probs=64.4
Q ss_pred CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087 25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (272)
Q Consensus 25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~ 101 (272)
++.+.|+|.+. +.+|+++++...|.+.|++|.-- ++...-+ .|.+.+.+ ....++.++.+.+.|....
T Consensus 320 ~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I--~sse~si--s~~i~~~~--~~~~~~~~~~l~~~l~~~~--- 390 (861)
T PRK08961 320 NGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLI--SSSETNV--TVSLDPSE--NLVNTDVLAALSADLSQIC--- 390 (861)
T ss_pred CCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEE--EcCCCEE--EEEEcccc--ccchHHHHHHHHHHHhhcC---
Confidence 35678888644 58999999999999999999654 3322111 34444322 1111223444444444311
Q ss_pred CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcE
Q 024087 102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNV 144 (272)
Q Consensus 102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I 144 (272)
.+.. ..+..+|.|.|. .+||+++.+..+|.+.++++
T Consensus 391 -----~i~~--~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~ 429 (861)
T PRK08961 391 -----RVKI--IVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL 429 (861)
T ss_pred -----cEEE--eCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence 1111 123467888886 88999999999999977544
No 211
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.92 E-value=4.7 Score=40.32 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=44.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
+..+.+...|+||.+..+..+|.+.++||...+++. .||.++-++.+-. .++ ++.+++|++
T Consensus 452 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~----~v~-~~~l~~i~~ 514 (526)
T PRK13581 452 GHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD----PVP-EEVLEELRA 514 (526)
T ss_pred ceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC----CCC-HHHHHHHhc
Confidence 344455669999999999999999999999999886 6677876665432 222 345565553
No 212
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=80.50 E-value=13 Score=25.19 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=28.0
Q ss_pred CCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 124 TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 124 ~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
.++||+.++|.++|.+.|+++.... | ++ ..-.|++..
T Consensus 11 ~~~~~~~~~if~~l~~~~i~v~~i~--t-~~-~~is~~v~~ 47 (62)
T cd04890 11 NGEVGFLRKIFEILEKHGISVDLIP--T-SE-NSVTLYLDD 47 (62)
T ss_pred CcccCHHHHHHHHHHHcCCeEEEEe--c-CC-CEEEEEEeh
Confidence 3789999999999999999998873 3 32 344566654
No 213
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.46 E-value=14 Score=24.23 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.8
Q ss_pred cCCCcchHHHHHHHHHhCCCcEEEEEE
Q 024087 123 GTDRPGLFSEVCAVLADLHCNVVNAEI 149 (272)
Q Consensus 123 ~~DRpGLL~~It~vL~~~g~~I~~A~i 149 (272)
..|.||++.++.++|.++|++|.....
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 478899999999999999999977654
No 214
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=80.12 E-value=7.5 Score=25.16 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=25.9
Q ss_pred EEEEEcCC---CcchHHHHHHHHHhCCCcEEEEEE
Q 024087 118 SIEFTGTD---RPGLFSEVCAVLADLHCNVVNAEI 149 (272)
Q Consensus 118 ~Iev~~~D---RpGLL~~It~vL~~~g~~I~~A~i 149 (272)
.|++.+.+ .+|.++++.++|.+++++|.....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~ 36 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQ 36 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEc
Confidence 45556555 899999999999999999976643
No 215
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=80.00 E-value=16 Score=25.32 Aligned_cols=28 Identities=14% Similarity=0.470 Sum_probs=24.8
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCcEE
Q 024087 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVV 145 (272)
Q Consensus 118 ~Iev~~~---DRpGLL~~It~vL~~~g~~I~ 145 (272)
.|.+.|. +.||+++++..+|.+.|++|.
T Consensus 3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 5667775 889999999999999999995
No 216
>PRK08198 threonine dehydratase; Provisional
Probab=79.43 E-value=18 Score=34.56 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=45.7
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-----cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-----DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-----~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
....+.|.-+|+||.|.++..++.+.|.||.+-.... ..+.+ .+....+.. +++..+.|.+.|...
T Consensus 326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~-~v~v~ie~~-----~~~~~~~l~~~L~~~ 396 (404)
T PRK08198 326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEV-EVELTLETR-----GPEHIEEILDALRDA 396 (404)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceE-EEEEEEEeC-----CHHHHHHHHHHHHHC
Confidence 4568899999999999999999999999999887653 12322 233322221 234556777777654
No 217
>PRK12483 threonine dehydratase; Reviewed
Probab=78.93 E-value=75 Score=31.92 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=79.1
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHH-HHHHHHHhcccC---
Q 024087 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVI-DYIQQRLETDAS--- 99 (272)
Q Consensus 25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~-~~I~~aL~~~~~--- 99 (272)
.....+.|.-+||||-|.+++.+|... ||.+-.-.. ..+. ..++....-.+ ++.. +.|.+.|.....
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~-----~~~~~~~i~~~l~~~g~~~~ 414 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHP-----RHDPRAQLLASLRAQGFPVL 414 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCC-----hhhhHHHHHHHHHHCCCCeE
Confidence 356688899999999999999999988 777655443 2222 33444333222 2333 778888866431
Q ss_pred -CCCC------ccceeee-C-CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEE
Q 024087 100 -FAPS------LRSSVGV-M-PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVH 161 (272)
Q Consensus 100 -~~~~------~~~~v~~-~-~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFy 161 (272)
+... .+.-++- . ....--.+.++-+.|||-|....++|.. ..||..-+=--+|...+.+|.
T Consensus 415 dlsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~-~~niTeF~YR~~~~~~a~v~v 484 (521)
T PRK12483 415 DLTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGP-RWNISLFHYRNHGAADGRVLA 484 (521)
T ss_pred ECCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCC-CcceeeeeecCCCCCceEEEE
Confidence 1100 1111221 1 1234557888899999999999999984 245555555555666666664
No 218
>PRK08526 threonine dehydratase; Provisional
Probab=78.91 E-value=42 Score=32.45 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=44.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe----eEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR----AAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r----v~dvFyVtd~~~G~~i~d~~~l~~i~~~L~ 185 (272)
...+.+.-+||||-|.+++.++.+.+.||....-.....+ -+.+..... ..+++..+.|.+.|.
T Consensus 326 ~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e------~~~~~~~~~~~~~l~ 393 (403)
T PRK08526 326 KMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLE------TKGKEHQEEIRKILT 393 (403)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEE------eCCHHHHHHHHHHHH
Confidence 4588999999999999999999999999998766443322 122221111 124667777777764
No 219
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=78.66 E-value=20 Score=40.46 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=64.7
Q ss_pred CCCEEEEEeCC--CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--c-C--CEEEEEEEEEcCCCCCCCcHH
Q 024087 13 NPPRVVIDNNT--CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--D-G--GWFMDVFNVIDCDGKKIRDKE 85 (272)
Q Consensus 13 ~~p~V~i~n~~--~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~-g--g~~~dvF~V~d~~G~~~~~~~ 85 (272)
++..+.+.... .++...++++...++..|++++-+|..+|+.|.+.+-+. . + ..++..|.+..+.+..+....
T Consensus 473 ~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~ 552 (1528)
T PF05088_consen 473 GPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDD 552 (1528)
T ss_pred CCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHH
Confidence 45666666533 346789999999999999999999999999999997654 2 2 345666888888777655566
Q ss_pred HHHHHHHHHhcc
Q 024087 86 VIDYIQQRLETD 97 (272)
Q Consensus 86 ~~~~I~~aL~~~ 97 (272)
..+.++++|...
T Consensus 553 ~~~~~~~a~~~v 564 (1528)
T PF05088_consen 553 IRERFEEAFEAV 564 (1528)
T ss_pred HHHHHHHHHHHH
Confidence 777777777654
No 220
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.60 E-value=7.3 Score=31.03 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=34.1
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEE
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNV 73 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V 73 (272)
.+-+.+..+|+||-|+++...|..+|+|+.+-.-.. ...|-+. |+|
T Consensus 41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~-FfI 88 (115)
T cd04930 41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLE-VLV 88 (115)
T ss_pred cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEE-EEE
Confidence 456666669999999999999999999998765443 3445443 444
No 221
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=78.60 E-value=12 Score=34.56 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=38.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCC
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKK 80 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~ 80 (272)
..|.+.+..+|+||-|+++.++|+..|+|..+-.-.- .++...-.|+| |..|..
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~i-D~eg~~ 247 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFI-DIEGHI 247 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEE-EEecCc
Confidence 3777788888999999999999999999998755432 33323334665 455553
No 222
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.39 E-value=5.3 Score=39.95 Aligned_cols=61 Identities=16% Similarity=0.302 Sum_probs=44.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHH
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQ 92 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~ 92 (272)
+..+.+.-.|+||.+..+..+|.++++||...++.. .||.++-++.+-. .++ ++.+++|++
T Consensus 451 ~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~----~v~-~~~l~~i~~ 513 (525)
T TIGR01327 451 GIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ----PVP-DEVLEEIKA 513 (525)
T ss_pred ccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC----CCC-HHHHHHHhc
Confidence 334455669999999999999999999999998875 6788876665432 222 345565554
No 223
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=78.37 E-value=5.9 Score=39.03 Aligned_cols=51 Identities=25% Similarity=0.267 Sum_probs=41.3
Q ss_pred CceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eE-EEEEEEe
Q 024087 114 EEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AA-AVVHVTD 164 (272)
Q Consensus 114 ~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~-dvFyVtd 164 (272)
...|.|-++..|+||-|+++-++|.++|+|+.+.+--....+ .. -.|||.-
T Consensus 29 ~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~ 81 (464)
T TIGR01270 29 VQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDV 81 (464)
T ss_pred CceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEE
Confidence 345777778899999999999999999999999887665544 44 5788865
No 224
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.21 E-value=18 Score=24.43 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=27.3
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (272)
Q Consensus 118 ~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i~T 151 (272)
.|.+.|. ++||+++++.+.|++.|++|....-.+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566664 789999999999999999997765433
No 225
>PRK08818 prephenate dehydrogenase; Provisional
Probab=77.93 E-value=6.1 Score=37.88 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=37.0
Q ss_pred CeEEEEEEec-CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEE
Q 024087 26 DATVIKVDSV-NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVI 74 (272)
Q Consensus 26 ~~t~V~V~s~-DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~ 74 (272)
..+.+.+.-+ |+||-|+++.++|...|+||.+-.+.-...|-+- |+|.
T Consensus 294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~ 342 (370)
T PRK08818 294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIG 342 (370)
T ss_pred cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEE
Confidence 3566777776 9999999999999999999999988433344443 5554
No 226
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=77.80 E-value=47 Score=35.23 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=67.8
Q ss_pred CCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCC
Q 024087 25 ADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFA 101 (272)
Q Consensus 25 ~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~ 101 (272)
++.+.|+|.+. +.+|.+.++..+|.+.|++|..-...+.+... .|.+... ..+.+.+.|..... .
T Consensus 315 ~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~si--s~~i~~~---------~~~~~~~~l~~~~~-~ 382 (810)
T PRK09466 315 DDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQLL--QLAYTSE---------VADSALKLLDDAAL-P 382 (810)
T ss_pred CCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCcEE--EEEEeHH---------HHHHHHHHHHhhcC-C
Confidence 46778888775 77899999999999999999766544443322 2444321 12233333433210 0
Q ss_pred CCccceeeeCCCCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEE
Q 024087 102 PSLRSSVGVMPTEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNA 147 (272)
Q Consensus 102 ~~~~~~v~~~~~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A 147 (272)
..+. -..+...|.+.|. .+||+.+++..+|.+.++++..-
T Consensus 383 ----~~i~--v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~~ 425 (810)
T PRK09466 383 ----GELK--LREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIWQ 425 (810)
T ss_pred ----CcEE--EeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEEE
Confidence 1111 1234567888885 68999999999999999998443
No 227
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=77.28 E-value=3.5 Score=37.53 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=32.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T 62 (272)
..-++.+.-.|.||++.+++++|+..|+||-+--+.-
T Consensus 76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~ 112 (309)
T KOG2663|consen 76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL 112 (309)
T ss_pred cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence 3457888899999999999999999999999877764
No 228
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.66 E-value=4.4 Score=29.57 Aligned_cols=31 Identities=16% Similarity=0.211 Sum_probs=26.0
Q ss_pred EEEEE---cCCCcchHHHHHHHHHhCCCcEEEEE
Q 024087 118 SIEFT---GTDRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 118 ~Iev~---~~DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
.|.|. ..++||++++|..+|+++|++|....
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 45552 46889999999999999999998763
No 229
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=76.46 E-value=19 Score=23.71 Aligned_cols=32 Identities=19% Similarity=0.395 Sum_probs=26.2
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEE
Q 024087 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEI 149 (272)
Q Consensus 118 ~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i 149 (272)
.|++.|. +++|+++++..+|.+.++++.....
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4666554 8899999999999999999966543
No 230
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=75.54 E-value=14 Score=36.29 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=42.3
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC-CeeEEEEEEEeCCCCCC
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN-DRAAAVVHVTDHSTGYA 170 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g-~rv~dvFyVtd~~~G~~ 170 (272)
.|.|-++..|+||-|++|-++|+++|+|+.+.+.-... ....-.|||.- .|..
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~--eg~~ 69 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEF--DEAS 69 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEE--ecCc
Confidence 46777788999999999999999999999998875543 33566888865 3544
No 231
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.24 E-value=29 Score=25.18 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=36.2
Q ss_pred cCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 123 GTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 123 ~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
..+.||++++|..+|+++|++|...- + +. ..-.|-|.. . ...+.+ +.++.|.+.|..
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~vDmI~--~-s~-~~isftv~~-~-~~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 11 MWQQVGFLADVFAPFKKHGVSVDLVS--T-SE-TNVTVSLDP-D-PNGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeC-c-ccccch-HHHHHHHHHHHh
Confidence 35789999999999999999998773 3 32 223344433 2 211332 356666666654
No 232
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=75.04 E-value=24 Score=33.42 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=44.6
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE---e--cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS---S--DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~---T--~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
...+.|.-+|+||.|++++.++.+.|.||.+-.-. . ..+.+.-.+.+.-. + ++..+.|.+.|...
T Consensus 305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-~-----~~~~~~i~~~L~~~ 374 (380)
T TIGR01127 305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-G-----KEHLDEILKILRDM 374 (380)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-C-----HHHHHHHHHHHHHc
Confidence 34888999999999999999999999999987544 1 23444333443322 1 34556677777553
No 233
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=74.90 E-value=6.9 Score=37.76 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=44.0
Q ss_pred EEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 118 SIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 118 ~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
.|||.+.||.||..++-..|...++++...+|...| .+|+.. ++ -+.+.++.+...++.
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid~~~-----~IYln~-p~----l~~~~fs~L~aei~~ 60 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIG-----RIYLNF-PE----LEFESFSSLMAEIRR 60 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeecCCC-----eEEEec-cc----cCHHHHHHHHHHHhc
Confidence 589999999999999999999999999999995544 366644 21 234555555555543
No 234
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=74.79 E-value=8.5 Score=26.53 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.0
Q ss_pred cCCCcchHHHHHHHHHhCCCcEEEEE
Q 024087 123 GTDRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 123 ~~DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
.+|+||.++++.++|.+.|++|....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 36899999999999999999998553
No 235
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=74.47 E-value=29 Score=24.86 Aligned_cols=63 Identities=14% Similarity=0.162 Sum_probs=38.2
Q ss_pred eEEEEEc---CCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 117 TSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 117 T~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
+.|.+.| .+.||++++|..+|++.|++|...- +.+ ..-.|.|.. ..+..+...+..|...|..
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~--~~is~~v~~---~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSE--VSVSLTLDP---TKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCC--cEEEEEEEc---hhhccchHHHHHHHHHHHh
Confidence 3556643 5789999999999999999996553 322 223344433 2222222355566666654
No 236
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=73.62 E-value=5.8 Score=32.68 Aligned_cols=68 Identities=25% Similarity=0.290 Sum_probs=46.2
Q ss_pred CCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE-eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 113 TEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 113 ~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~-T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
..+-..+.+.-.||.|.|+++-.++++.+|||...+=. ...++|.-++.+.- + + .+.....|-+.|+.
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~-s-s----m~~~V~~ii~kl~k 137 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDT-S-S----MEKDVDKIIEKLRK 137 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEc-h-h----hhhhHHHHHHHHhc
Confidence 34566788899999999999999999999999776532 23456666665543 2 1 13344555555553
No 237
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.95 E-value=26 Score=23.67 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=27.7
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (272)
Q Consensus 118 ~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i~T 151 (272)
.|.+.|. ++||+++++...|++.|+++......+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 5666665 789999999999999999998775433
No 238
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=70.62 E-value=27 Score=23.63 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=27.4
Q ss_pred EEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087 28 TVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISS 62 (272)
Q Consensus 28 t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A~I~T 62 (272)
..|++.+ .+.+|++.++.++|.+.|++|.--...+
T Consensus 2 ~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred eEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3566666 4789999999999999999997654433
No 239
>PRK09224 threonine dehydratase; Reviewed
Probab=69.51 E-value=1.1e+02 Score=30.43 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=75.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC----CC
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS----FA 101 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~----~~ 101 (272)
....+.|.-+||||-|.+++.+|. +.||..-+-.-.+..-..+|....-.+. +...+.|.+.|..... +.
T Consensus 327 re~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~~----~~~~~~i~~~L~~~gy~~~~ls 400 (504)
T PRK09224 327 REALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSRG----QEERAEIIAQLRAHGYPVVDLS 400 (504)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCCh----hhHHHHHHHHHHHcCCCeEECC
Confidence 467889999999999999999999 5777765443322222334443332221 1225677777866431 11
Q ss_pred CC------ccceeee-C-CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCC
Q 024087 102 PS------LRSSVGV-M-PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHND 154 (272)
Q Consensus 102 ~~------~~~~v~~-~-~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~ 154 (272)
.. .+.-|+- . ...+--.+.+.=+.|||-|-+...+|. -+-||..-+=.-+|.
T Consensus 401 ~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fPerpGal~~Fl~~l~-~~~~It~f~Yr~~~~ 460 (504)
T PRK09224 401 DDELAKLHVRYMVGGRPPKPLDERLYRFEFPERPGALLKFLSTLG-THWNISLFHYRNHGA 460 (504)
T ss_pred CCHHHHHHHHhccCCCCCCCCceEEEEEeCCCCCCHHHHHHHhcC-CCCeeEEEEEccCCc
Confidence 00 0111221 1 122345788889999999999988777 778998888754443
No 240
>PRK14633 hypothetical protein; Provisional
Probab=69.48 E-value=60 Score=27.00 Aligned_cols=89 Identities=11% Similarity=0.160 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCceeEE
Q 024087 40 ILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSI 119 (272)
Q Consensus 40 Ll~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~T~I 119 (272)
+-..+..++..+|+.+.+-.+...+++.+-+|. ..++|-.+ +-++.+-++|.....- .++-.+.+.+
T Consensus 6 i~~lv~p~~~~~G~eL~dve~~~~~~~~lrV~I-D~~~Gv~l---ddC~~vSr~i~~~LD~---------~d~i~~~Y~L 72 (150)
T PRK14633 6 LYEIVEPITADLGYILWGIEVVGSGKLTIRIFI-DHENGVSV---DDCQIVSKEISAVFDV---------EDPVSGKYIL 72 (150)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEEE-eCCCCCCH---HHHHHHHHHHHHHhcc---------CcCCCCCeEE
Confidence 445677889999999999999877777776554 33455333 2345555555443210 0222356789
Q ss_pred EEEcC--CCcchHHHHHHHHHhCCCc
Q 024087 120 EFTGT--DRPGLFSEVCAVLADLHCN 143 (272)
Q Consensus 120 ev~~~--DRpGLL~~It~vL~~~g~~ 143 (272)
||+++ ||| |......-+-.|-.
T Consensus 73 EVSSPGldRp--L~~~~~f~r~~G~~ 96 (150)
T PRK14633 73 EVSSPGMNRQ--IFNIIQAQALVGFN 96 (150)
T ss_pred EEeCCCCCCC--CCCHHHHHHhCCCe
Confidence 99965 666 55555555555544
No 241
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=67.88 E-value=28 Score=33.52 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=36.4
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE-ecC-CEEEEEEEEEcCCCC
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS-SDG-GWFMDVFNVIDCDGK 79 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~-T~g-g~~~dvF~V~d~~G~ 79 (272)
.|-+.+..+|+||.|+++.++|+..|+|+.+-.-. +.+ .|-+ .|+|- ..|.
T Consensus 297 ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y-~Ffid-~eg~ 349 (386)
T PRK10622 297 KTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEE-MFYLD-VQAN 349 (386)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceE-EEEEE-EeCC
Confidence 55555666899999999999999999999876544 233 3433 46654 4554
No 242
>PRK12483 threonine dehydratase; Reviewed
Probab=67.36 E-value=87 Score=31.47 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=34.1
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEE
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHV 162 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyV 162 (272)
....+.|.-+||||-|.+++.+|.+. ||...+-...+.+-+.++..
T Consensus 344 r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ 389 (521)
T PRK12483 344 REAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVG 389 (521)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEE
Confidence 35578899999999999999999988 88766655444444444433
No 243
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.36 E-value=45 Score=28.04 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCce
Q 024087 38 HGILLQVIQVLNDVNLVIKKAYISSDG-GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEH 116 (272)
Q Consensus 38 pGLl~~v~~vL~d~gl~I~~A~I~T~g-g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~ 116 (272)
..+..-+-.++.++|+.+.+..+...| +|++-+|.=.+ .|-.+. -++.+-+.+.+.... -++-...
T Consensus 8 ~~v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~-g~v~ld---dC~~vSr~is~~LD~---------edpi~~~ 74 (153)
T COG0779 8 EKVTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKE-GGVTLD---DCADVSRAISALLDV---------EDPIEGA 74 (153)
T ss_pred HHHHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCC-CCCCHH---HHHHHHHHHHHHhcc---------CCccccc
Confidence 456667778999999999999999966 79987765322 333332 344454444443210 0233467
Q ss_pred eEEEEEcC--CCcchH
Q 024087 117 TSIEFTGT--DRPGLF 130 (272)
Q Consensus 117 T~Iev~~~--DRpGLL 130 (272)
|.+||+++ |||=.-
T Consensus 75 Y~LEVSSPGldRpL~~ 90 (153)
T COG0779 75 YFLEVSSPGLDRPLKT 90 (153)
T ss_pred EEEEeeCCCCCCCcCC
Confidence 89999965 888443
No 244
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=67.09 E-value=28 Score=24.73 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=27.4
Q ss_pred eEEEEEc---CCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087 117 TSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (272)
Q Consensus 117 T~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A~i~T 151 (272)
+.|++.| .+++|+++++.++|++.++++....-.+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 3566744 3789999999999999999997664433
No 245
>PRK06349 homoserine dehydrogenase; Provisional
Probab=66.37 E-value=30 Score=33.60 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=39.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcC
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDC 76 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~ 76 (272)
...-|.+...|+||.|++++..|.+.+++|.+-......+....++.+++.
T Consensus 347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~~ 397 (426)
T PRK06349 347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHE 397 (426)
T ss_pred eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEEe
Confidence 456888999999999999999999999999976654433344455666653
No 246
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.25 E-value=37 Score=23.04 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=27.6
Q ss_pred EEEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087 28 TVIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISS 62 (272)
Q Consensus 28 t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T 62 (272)
..|.+.+. ++||++.++.++|.+.|++|.--...+
T Consensus 2 ~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred eEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 35666665 689999999999999999997665444
No 247
>PRK14632 hypothetical protein; Provisional
Probab=65.51 E-value=71 Score=27.22 Aligned_cols=89 Identities=13% Similarity=0.088 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCceeEE
Q 024087 40 ILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSI 119 (272)
Q Consensus 40 Ll~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~T~I 119 (272)
+-..+..++..+|+.+.+..+...++|.+-+|. -...|-.+. -++.+-+++.....- .++-.+.|.|
T Consensus 10 i~~li~pv~~~~G~eLvdve~~~~~~~~lrV~I-D~~~GV~ld---DC~~vSr~is~~LD~---------~d~i~~~Y~L 76 (172)
T PRK14632 10 IADMAGPFLASLGLELWGIELSYGGRTVVRLFV-DGPEGVTID---QCAEVSRHVGLALEV---------EDVISSAYVL 76 (172)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEeCCCcEEEEEE-ECCCCCCHH---HHHHHHHHHHHHhcc---------cccCCCCeEE
Confidence 445567788999999999998766667775555 323453332 344444444443210 0122356789
Q ss_pred EEEcC--CCcchHHHHHHHHHhCCCc
Q 024087 120 EFTGT--DRPGLFSEVCAVLADLHCN 143 (272)
Q Consensus 120 ev~~~--DRpGLL~~It~vL~~~g~~ 143 (272)
||+++ ||| |...-..-+-.|-.
T Consensus 77 EVSSPGldRp--L~~~~~f~r~iG~~ 100 (172)
T PRK14632 77 EVSSPGLERP--FFRAEQMSPYVGRQ 100 (172)
T ss_pred EEeCCCCCCc--CCCHHHHHHhCCCE
Confidence 99955 776 44444444444433
No 248
>PRK08841 aspartate kinase; Validated
Probab=64.66 E-value=94 Score=29.92 Aligned_cols=93 Identities=13% Similarity=0.244 Sum_probs=58.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCcc
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLR 105 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~ 105 (272)
+.+.|++.+ +.+.++.+.|.++|+++..-. +...-+ .|.|.. ...+.++..+..
T Consensus 257 ~~~~i~v~~----~~~~~i~~~l~~~~i~v~~i~--~~~~~~--~~~v~~---------~~~~~~~~~~~~--------- 310 (392)
T PRK08841 257 DLALIEVES----ESLPSLTKQCQMLGIEVWNVI--EEADRA--QIVIKQ---------DACAKLKLVFDD--------- 310 (392)
T ss_pred CeEEEEecc----chHHHHHHHHHHcCCCEEEEE--ecCCcE--EEEECH---------HHHHHHHHhCcc---------
Confidence 455666644 357899999999998887543 222111 244431 112223222211
Q ss_pred ceeeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEE
Q 024087 106 SSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNA 147 (272)
Q Consensus 106 ~~v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A 147 (272)
.+. -..+...|.+.|...||+++.+..+|.+.|+||...
T Consensus 311 -~i~--~~~~~a~vsvVG~~~~gv~~~~~~aL~~~~I~i~~i 349 (392)
T PRK08841 311 -KIR--NSESVSLLTLVGLEANGMVEHACNLLAQNGIDVRQC 349 (392)
T ss_pred -cEE--EeCCEEEEEEECCCChHHHHHHHHHHHhCCCCEEEE
Confidence 111 113456889999999999999999999999999543
No 249
>PRK14634 hypothetical protein; Provisional
Probab=64.31 E-value=80 Score=26.42 Aligned_cols=93 Identities=6% Similarity=-0.089 Sum_probs=55.8
Q ss_pred CcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCce
Q 024087 38 HGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEH 116 (272)
Q Consensus 38 pGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~ 116 (272)
..+...+..++..+|+.+.+..+.. .++|.+-+|. ..++|..++- +.++.+-+++.....- .++-...
T Consensus 7 ~~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~I-D~~~g~~v~l-ddC~~vSr~is~~LD~---------~d~i~~~ 75 (155)
T PRK14634 7 PDLETLASATAADKGFELCGIQVLTHLQPMTLQVQI-RRSSGSDVSL-DDCAGFSGPMGEALEA---------SQLLTEA 75 (155)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEE-ECCCCCcccH-HHHHHHHHHHHHHhcc---------cccCCCC
Confidence 3566667788999999999999887 4678886554 3355632322 2345555555443220 0222356
Q ss_pred eEEEEEcC--CCcchHHHHHHHHHhCCCc
Q 024087 117 TSIEFTGT--DRPGLFSEVCAVLADLHCN 143 (272)
Q Consensus 117 T~Iev~~~--DRpGLL~~It~vL~~~g~~ 143 (272)
|.|||+++ ||| |......-+-.|-.
T Consensus 76 Y~LEVSSPGldRp--L~~~~~f~r~~G~~ 102 (155)
T PRK14634 76 YVLEISSPGIGDQ--LSSDRDFQTFRGFP 102 (155)
T ss_pred eEEEEeCCCCCCc--CCCHHHHHHhCCCe
Confidence 78999965 776 44444444444443
No 250
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=64.12 E-value=1.4e+02 Score=28.84 Aligned_cols=66 Identities=12% Similarity=0.098 Sum_probs=41.9
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE-eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~-T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
....+.+.-+||||=|.++...+...+-||...+-. ..+.....++..-. . .+++..+.|.+.|.+
T Consensus 324 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE-~-----~~~~h~~~i~~~L~~ 390 (409)
T TIGR02079 324 LKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIE-L-----NDKEDFAGLLERMAA 390 (409)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEE-e-----CCHHHHHHHHHHHHH
Confidence 355888999999999999999666666699865544 33333333333222 1 235566666666643
No 251
>PRK00907 hypothetical protein; Provisional
Probab=63.45 E-value=33 Score=26.32 Aligned_cols=65 Identities=15% Similarity=0.196 Sum_probs=48.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE----EecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI----SSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I----~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.+-++|.+.+++++...|..++..+.-......+ |+.|.|.--.+.|+- .+++.++.|-++|.+.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a------ts~eQld~iY~~L~~~ 85 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA------ESREQYDAAHQALRDH 85 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 4789999999999999999999988766655655 345666554555553 3356788899999875
No 252
>PRK14646 hypothetical protein; Provisional
Probab=61.42 E-value=96 Score=25.92 Aligned_cols=93 Identities=10% Similarity=0.052 Sum_probs=56.4
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCcee
Q 024087 39 GILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHT 117 (272)
Q Consensus 39 GLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~T 117 (272)
.+...+..++..+|+.+.+..+.. .++|++-+|. ..++|..++- +-++.+-+.+...... .++-...|
T Consensus 8 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~I-Dk~~g~gVtl-dDC~~vSr~is~~LD~---------~D~i~~~Y 76 (155)
T PRK14646 8 KLEILLEKVANEFDLKICSLNIQTNQNPIVIKIII-KKTNGDDISL-DDCALFNTPASEEIEN---------SNLLNCSY 76 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEE-ECCCCCCccH-HHHHHHHHHHHHHhCc---------CCCCCCCe
Confidence 456678889999999999999887 4578776555 3333433322 2345555555443220 02334678
Q ss_pred EEEEEcC--CCcchHHHHHHHHHhCCCcE
Q 024087 118 SIEFTGT--DRPGLFSEVCAVLADLHCNV 144 (272)
Q Consensus 118 ~Iev~~~--DRpGLL~~It~vL~~~g~~I 144 (272)
.+||+++ ||| |...-..-+-.|-.|
T Consensus 77 ~LEVSSPGldRp--L~~~~df~r~~G~~v 103 (155)
T PRK14646 77 VLEISSQGVSDE--LTSERDFKTFKGFPV 103 (155)
T ss_pred EEEEcCCCCCCc--CCCHHHHHHhCCCEE
Confidence 9999965 666 555555555555443
No 253
>PRK14630 hypothetical protein; Provisional
Probab=61.41 E-value=92 Score=25.70 Aligned_cols=77 Identities=8% Similarity=0.034 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCC
Q 024087 36 NKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTE 114 (272)
Q Consensus 36 DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~ 114 (272)
|.-.+-..+..++..+|+.+.+..... .++|.+-+|. ..++|-.+. -++.+-+.+..... ++-.
T Consensus 6 ~~~~i~~li~~~~~~~G~eLvdve~~~~~~~~~lrV~I-d~~~gV~id---DC~~vSr~i~~~ld-----------~~i~ 70 (143)
T PRK14630 6 DNSEVYNLIKNVTDRLGIEIIEINTFRNRNEGKIQIVL-YKKDSFGVD---TLCDLHKMILLILE-----------AVLK 70 (143)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEE-ECCCCCCHH---HHHHHHHHHHHHhc-----------ccCC
Confidence 444567778899999999999999877 4567775554 334553332 34445444433221 1123
Q ss_pred ceeEEEEEcC--CCc
Q 024087 115 EHTSIEFTGT--DRP 127 (272)
Q Consensus 115 ~~T~Iev~~~--DRp 127 (272)
..+.+||+++ |||
T Consensus 71 ~~Y~LEVSSPGldRp 85 (143)
T PRK14630 71 YNFSLEISTPGINRK 85 (143)
T ss_pred CCeEEEEeCCCCCCc
Confidence 4567888854 666
No 254
>PRK14647 hypothetical protein; Provisional
Probab=61.01 E-value=99 Score=25.91 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCceeE
Q 024087 40 ILLQVIQVLNDVNLVIKKAYISSDG-GWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTS 118 (272)
Q Consensus 40 Ll~~v~~vL~d~gl~I~~A~I~T~g-g~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~T~ 118 (272)
+-..+..++..+|+.+.+..+...+ ++.+-+|. -.+.|-.+. -++.+-+++...... .++-.+.|.
T Consensus 10 i~~~i~~~~~~~G~~L~dv~~~~~~~~~~lrV~I-D~~~gvsld---dC~~vSr~is~~LD~---------~d~i~~~Y~ 76 (159)
T PRK14647 10 VTELAEQVLSSLGLELVELEYKREGREMVLRLFI-DKEGGVNLD---DCAEVSRELSEILDV---------EDFIPERYT 76 (159)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCeEEEEEE-eCCCCCCHH---HHHHHHHHHHHHHcc---------cccCCCCeE
Confidence 4455677899999999999998854 57775554 323443332 344444444443210 012235678
Q ss_pred EEEEcC--CCcchHHHHHHHHHhCCCc
Q 024087 119 IEFTGT--DRPGLFSEVCAVLADLHCN 143 (272)
Q Consensus 119 Iev~~~--DRpGLL~~It~vL~~~g~~ 143 (272)
|||+++ ||| |...-..-+-.|-.
T Consensus 77 LEVSSPG~~Rp--L~~~~~f~r~~G~~ 101 (159)
T PRK14647 77 LEVSSPGLDRP--LKKEADYERYAGRL 101 (159)
T ss_pred EEEcCCCCCCc--CCCHHHHHHhCCcE
Confidence 999965 676 44444444444443
No 255
>PRK14640 hypothetical protein; Provisional
Probab=61.00 E-value=96 Score=25.79 Aligned_cols=90 Identities=11% Similarity=0.069 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCceeE
Q 024087 40 ILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTS 118 (272)
Q Consensus 40 Ll~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~T~ 118 (272)
+...+..++..+|+.+.+-.+.. .++|.+-+|. ..++|-.+ +-++.+-++|...... .++-...+.
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~I-D~~~gv~l---ddC~~vSr~is~~LD~---------~d~i~~~Y~ 74 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYI-DGENGVSV---ENCAEVSHQVGAIMDV---------EDPITEEYY 74 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE-ECCCCCCH---HHHHHHHHHHHHHhcc---------cccCCCCeE
Confidence 45567788999999999999887 4567775554 33455333 3455555555543320 022235678
Q ss_pred EEEEcC--CCcchHHHHHHHHHhCCCcE
Q 024087 119 IEFTGT--DRPGLFSEVCAVLADLHCNV 144 (272)
Q Consensus 119 Iev~~~--DRpGLL~~It~vL~~~g~~I 144 (272)
+||+++ ||| |...-..-+..|-.|
T Consensus 75 LEVSSPGl~Rp--L~~~~~f~r~~G~~v 100 (152)
T PRK14640 75 LEVSSPGLDRP--LFKVAQFEKYVGQEA 100 (152)
T ss_pred EEEeCCCCCCc--CCCHHHHHHhCCCeE
Confidence 999965 666 555555555555443
No 256
>PRK14639 hypothetical protein; Provisional
Probab=60.30 E-value=84 Score=25.83 Aligned_cols=86 Identities=12% Similarity=0.147 Sum_probs=49.3
Q ss_pred HHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCceeEEEEE
Q 024087 44 VIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFT 122 (272)
Q Consensus 44 v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~T~Iev~ 122 (272)
+-.++.++|+.+.+..... .++|.+-+|. -...|-.+ +-++.+-+++...... .++-...+.+||+
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~I-d~~~gv~i---ddC~~vSr~is~~LD~---------~d~i~~~Y~LEVS 69 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYI-TKEGGVNL---DDCERLSELLSPIFDV---------EPPVSGEYFLEVS 69 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEE-eCCCCCCH---HHHHHHHHHHHHHhcc---------ccccCCCeEEEEe
Confidence 4567889999999999887 4567776555 32334232 2344454444443210 0222346789998
Q ss_pred cC--CCcchHHHHHHHHHhCCCcE
Q 024087 123 GT--DRPGLFSEVCAVLADLHCNV 144 (272)
Q Consensus 123 ~~--DRpGLL~~It~vL~~~g~~I 144 (272)
++ ||| |...-..-+-.|-.|
T Consensus 70 SPGl~Rp--L~~~~~f~r~~G~~v 91 (140)
T PRK14639 70 SPGLERK--LSKIEHFAKSIGELV 91 (140)
T ss_pred CCCCCCc--CCCHHHHHHhCCCEE
Confidence 55 666 444444445555444
No 257
>PRK14636 hypothetical protein; Provisional
Probab=60.02 E-value=1.1e+02 Score=26.32 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=54.9
Q ss_pred CCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCc
Q 024087 37 KHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEE 115 (272)
Q Consensus 37 rpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~ 115 (272)
.+-+...+..++..+|+.+.+..+... ++|++-+|. ..++|..++= +-++.+-+.|...... .++-..
T Consensus 4 ~~~i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~I-D~~~~ggV~l-DDC~~vSr~Is~~LD~---------~d~i~~ 72 (176)
T PRK14636 4 IAALTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMA-ERPDTRQLVI-EDCAALSRRLSDVFDE---------LDPIED 72 (176)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEE-ECCCCCCcCH-HHHHHHHHHHHHHhcc---------CcCCCC
Confidence 344666788899999999999998874 577776655 3333222321 2345555555443220 022235
Q ss_pred eeEEEEEcC--CCcchHHHHHHHHHhCCCc
Q 024087 116 HTSIEFTGT--DRPGLFSEVCAVLADLHCN 143 (272)
Q Consensus 116 ~T~Iev~~~--DRpGLL~~It~vL~~~g~~ 143 (272)
.|.|||+++ ||| |...-..-+-.|-.
T Consensus 73 ~Y~LEVSSPGldRp--L~~~~df~r~~G~~ 100 (176)
T PRK14636 73 AYRLEVSSPGIDRP--LTRPKDFADWAGHE 100 (176)
T ss_pred CeEEEEeCCCCCCC--CCCHHHHHHhCCCe
Confidence 678999965 776 44444444444443
No 258
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=59.76 E-value=89 Score=33.96 Aligned_cols=81 Identities=7% Similarity=0.043 Sum_probs=56.4
Q ss_pred cCCCEEEEEeCC-CCCeEEEEE---EecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHH
Q 024087 12 MNPPRVVIDNNT-CADATVIKV---DSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEV 86 (272)
Q Consensus 12 ~~~p~V~i~n~~-~~~~t~V~V---~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~ 86 (272)
-..|.+.+.... ......+.+ ..+-..|+|+.+..++.-+|+.+..+|+-+ .+|..+-.|+|+...+....+.++
T Consensus 214 ~~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~~~~~ 293 (1002)
T PTZ00324 214 SVGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNPDLSI 293 (1002)
T ss_pred cCCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcccccH
Confidence 346788777655 223334444 456678899999999999999999999988 577777799999765543223334
Q ss_pred HHHHHH
Q 024087 87 IDYIQQ 92 (272)
Q Consensus 87 ~~~I~~ 92 (272)
.+.+++
T Consensus 294 ~~~~~~ 299 (1002)
T PTZ00324 294 EDRASL 299 (1002)
T ss_pred HHHHHh
Confidence 444544
No 259
>PLN02550 threonine dehydratase
Probab=59.15 E-value=2.2e+02 Score=29.24 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=77.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC----C
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS----F 100 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~----~ 100 (272)
....+.|.-+||||-|.+++.+|... ||.+-.-.- ..+.+ .++....-. +++..+.|.+.|..... +
T Consensus 416 r~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~-~v~v~ie~~-----~~~~~~~i~~~l~~~g~~~~~l 487 (591)
T PLN02550 416 QEAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEA-LVLYSVGVH-----TEQELQALKKRMESAQLRTVNL 487 (591)
T ss_pred CEEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCce-EEEEEEEeC-----CHHHHHHHHHHHHHCCCCeEeC
Confidence 34678899999999999999999986 777654432 22222 233322222 24567778888876532 1
Q ss_pred CC------Cccceeee-CCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEE
Q 024087 101 AP------SLRSSVGV-MPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVH 161 (272)
Q Consensus 101 ~~------~~~~~v~~-~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFy 161 (272)
.. ..|.-++- .....--.+.+.-+.|||-|.+...+|.. .-||..-+=..+++..+.+|.
T Consensus 488 ~~~~~~~~~LR~v~g~ra~~~~E~l~~v~fPErpGAl~~Fl~~lg~-~~nITeF~YR~~~~~~a~vlv 554 (591)
T PLN02550 488 TSNDLVKDHLRYLMGGRAIVKDELLYRFVFPERPGALMKFLDAFSP-RWNISLFHYRGQGETGANVLV 554 (591)
T ss_pred CCChHHhhhhhheeccccccCceEEEEEEecCcCCHHHHHHHhhCC-CCceeeEEeecCCCCCccEEE
Confidence 10 01111111 11133457888899999999999998874 356666665566666665554
No 260
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=58.87 E-value=35 Score=25.62 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=47.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEee--CCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTH--NDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~--g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
.+.+.+.+.++|+.|..|-++-...|..|.....++. ++++.--|-| | +..|+ +.|..+|.++..
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV-~--s~R~~------~lL~~QLeKl~D 69 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTV-D--SDRSV------DLLTSQLEKLYD 69 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEE-c--CCCCh------HHHHHHHHHHcc
Confidence 4688999999999999999999999999998887766 4455444444 4 24444 345555555443
No 261
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=58.77 E-value=1e+02 Score=25.47 Aligned_cols=77 Identities=9% Similarity=0.133 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCceeE
Q 024087 40 ILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTS 118 (272)
Q Consensus 40 Ll~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~T~ 118 (272)
+-..+..++..+|+.+.+..+... +++.+-+|. -...|-.+ +.++.+-+.+.....- .++-...+.
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~I-d~~~gv~i---ddc~~~Sr~is~~LD~---------~d~i~~~Y~ 75 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYI-DKEGGIDL---DDCEEVSRQISAVLDV---------EDPIPGAYT 75 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEE-ECCCCCCH---HHHHHHHHHHHHHhcc---------ccCCCCCeE
Confidence 445668889999999999999874 567765554 32344322 3445555555443210 012224577
Q ss_pred EEEEcC--CCcch
Q 024087 119 IEFTGT--DRPGL 129 (272)
Q Consensus 119 Iev~~~--DRpGL 129 (272)
|||+++ |||=.
T Consensus 76 LEVSSPGi~RpL~ 88 (154)
T PRK00092 76 LEVSSPGLDRPLK 88 (154)
T ss_pred EEEeCCCCCCcCC
Confidence 999955 67644
No 262
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=58.62 E-value=42 Score=28.55 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=30.4
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS 62 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T 62 (272)
.+.+.-.|.||.|.++++.|+..|+||.+-.+.-
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~ 39 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGP 39 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEe
Confidence 5677888999999999999999999999888763
No 263
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=58.26 E-value=49 Score=24.57 Aligned_cols=51 Identities=6% Similarity=-0.085 Sum_probs=37.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
.....+.+...| +.+....|..+|.+|...-....++. ..|++.|++|+.+
T Consensus 60 ~~~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~~--~~~~~~DPdG~~~ 110 (114)
T cd07247 60 PPGWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGVG--RFAVFADPEGAVF 110 (114)
T ss_pred CCeEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCcE--EEEEEECCCCCEE
Confidence 455677788777 67788889999999987654333222 4699999999865
No 264
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.24 E-value=10 Score=28.08 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=23.3
Q ss_pred cCCCcchHHHHHHHHHhCCCcEEEEE
Q 024087 123 GTDRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 123 ~~DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
..+.||++++|.++|++.|++|....
T Consensus 11 ~~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 11 MLGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCCccCHHHHHHHHHHHcCCcEEEEE
Confidence 46889999999999999999998773
No 265
>PRK09224 threonine dehydratase; Reviewed
Probab=58.15 E-value=1.6e+02 Score=29.32 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=34.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
...+.+.-+||||=|.+++++|. +.||...+-.-.+..-+.+|....
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie 374 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQ 374 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEE
Confidence 45888999999999999999999 688877665544444455554433
No 266
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=58.08 E-value=1.7e+02 Score=29.08 Aligned_cols=63 Identities=17% Similarity=0.327 Sum_probs=43.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
...+.+.-+||||-|.+++++|.. .||...+-.-.+...+.+|..-. +.+++.++.|.+.|..
T Consensus 325 e~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie------~~~~~~~~~l~~~L~~ 387 (499)
T TIGR01124 325 EALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQ------LSNPQERQEILARLND 387 (499)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 458899999999999999999997 47776655434434444554433 1245666777777743
No 267
>PRK14646 hypothetical protein; Provisional
Probab=58.05 E-value=1e+02 Score=25.83 Aligned_cols=89 Identities=12% Similarity=0.180 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCcccccccc-ccCCCCCCc
Q 024087 129 LFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGYDDFRKAK-TSLSPPGIM 207 (272)
Q Consensus 129 LL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~~~~~~~~-~~~~~~~~~ 207 (272)
+..-+..++.++|+.+...+....|....--+|+.. ..|..++ =...+.+-+++...|...+-...+= =.|+++|.
T Consensus 9 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk-~~g~gVt-ldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGl- 85 (155)
T PRK14646 9 LEILLEKVANEFDLKICSLNIQTNQNPIVIKIIIKK-TNGDDIS-LDDCALFNTPASEEIENSNLLNCSYVLEISSQGV- 85 (155)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEEC-CCCCCcc-HHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCC-
Confidence 556778889999999999999999888777788843 3344554 3567888888888888643222211 13333553
Q ss_pred CCCcchhhhhcccchhhHh
Q 024087 208 NRERRLHQIMFDDRDYERV 226 (272)
Q Consensus 208 h~~rrlhq~m~~~~~~e~~ 226 (272)
+|.|. ..+||+|+
T Consensus 86 --dRpL~----~~~df~r~ 98 (155)
T PRK14646 86 --SDELT----SERDFKTF 98 (155)
T ss_pred --CCcCC----CHHHHHHh
Confidence 66643 34566664
No 268
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=57.95 E-value=29 Score=23.90 Aligned_cols=29 Identities=10% Similarity=0.268 Sum_probs=25.2
Q ss_pred EEEEEEec---CCCcHHHHHHHHHHhCCceEE
Q 024087 28 TVIKVDSV---NKHGILLQVIQVLNDVNLVIK 56 (272)
Q Consensus 28 t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~ 56 (272)
..|.|.+. +.||++.++..+|.+.|++|.
T Consensus 2 ~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred eEEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 35677775 789999999999999999996
No 269
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=57.94 E-value=66 Score=22.92 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=24.7
Q ss_pred EEEEEEe---cCCCcHHHHHHHHHHhCCceEEEE
Q 024087 28 TVIKVDS---VNKHGILLQVIQVLNDVNLVIKKA 58 (272)
Q Consensus 28 t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A 58 (272)
+.|++.+ .+.+|++.++..+|.+.|++|..-
T Consensus 2 ~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i 35 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLI 35 (75)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEE
Confidence 3556633 567999999999999999999544
No 270
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=57.69 E-value=19 Score=23.08 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=26.0
Q ss_pred EEEEEecC---CCcHHHHHHHHHHhCCceEEEEEEE
Q 024087 29 VIKVDSVN---KHGILLQVIQVLNDVNLVIKKAYIS 61 (272)
Q Consensus 29 ~V~V~s~D---rpGLl~~v~~vL~d~gl~I~~A~I~ 61 (272)
.|+|.+.+ .+|.+.++.++|.+.+++|..-..+
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 35555554 8999999999999999999765543
No 271
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.23 E-value=27 Score=23.16 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=25.2
Q ss_pred EEEEEc---CCCcchHHHHHHHHHhCCCcEEEEE
Q 024087 118 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 118 ~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
.|.+.| .+.||++.++..+|.+.++++....
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEE
Confidence 355554 3679999999999999999997664
No 272
>PRK08639 threonine dehydratase; Validated
Probab=56.13 E-value=2e+02 Score=27.83 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=41.0
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE-eeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW-THNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~-T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
....+.+.-+||||-|.++...+...+-||...+-. .++.....++..-. +.+++..+.|.+.|..
T Consensus 335 r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE------~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 335 LKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIE------LKDAEDYDGLIERMEA 401 (420)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEE------eCCHHHHHHHHHHHHH
Confidence 456888999999999999999555555599876533 22322333222222 1235566677776654
No 273
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=55.83 E-value=38 Score=23.92 Aligned_cols=34 Identities=6% Similarity=0.263 Sum_probs=24.9
Q ss_pred HHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCC
Q 024087 44 VIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCD 77 (272)
Q Consensus 44 v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~ 77 (272)
+...+...|+.+..=.+.|.+|+.+.+|.+....
T Consensus 1 ~~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~ 34 (63)
T PF04083_consen 1 VPELIEKHGYPCEEHEVTTEDGYILTLHRIPPGK 34 (63)
T ss_dssp HHHHHHHTT---EEEEEE-TTSEEEEEEEE-SBT
T ss_pred CHHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCC
Confidence 3567889999999999999999999999997654
No 274
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.29 E-value=50 Score=21.32 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=29.3
Q ss_pred ecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEE
Q 024087 34 SVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVI 74 (272)
Q Consensus 34 s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~ 74 (272)
.+|.+|.+.++.+.|.+.|++|....... .+|..--.|.|.
T Consensus 8 ~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~ 49 (61)
T cd04891 8 VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVP 49 (61)
T ss_pred CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEe
Confidence 47889999999999999999997765543 223222245554
No 275
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=55.05 E-value=57 Score=21.26 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=25.9
Q ss_pred EEEEEec---CCCcHHHHHHHHHHhCCceEEEEEE
Q 024087 29 VIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYI 60 (272)
Q Consensus 29 ~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I 60 (272)
.|++.+. +++|++.++...|.+.+++|..-..
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~ 36 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQ 36 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4566554 7899999999999999999976544
No 276
>PRK14638 hypothetical protein; Provisional
Probab=54.94 E-value=1.2e+02 Score=25.13 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=52.3
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCC-CCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCce
Q 024087 39 GILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDG-KKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEH 116 (272)
Q Consensus 39 GLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G-~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~ 116 (272)
.+-..+..++..+|+.+.+..... .++|.+-+|. ..++| -.+ +.++.+-+.|.....- .++-...
T Consensus 9 ~i~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~I-D~~~G~v~l---ddC~~vSr~is~~LD~---------~d~i~~~ 75 (150)
T PRK14638 9 KVRKEAERIAEEQGLEIFDVQYRRESRGWVLRIII-DNPVGYVSV---RDCELFSREIERFLDR---------EDLIEHS 75 (150)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEE-ECCCCCcCH---HHHHHHHHHHHHHhcc---------ccccCCc
Confidence 344567788999999999999887 4678886655 32344 233 2344444444443210 0122356
Q ss_pred eEEEEEcC--CCcchHHHHHHHHHhCCCc
Q 024087 117 TSIEFTGT--DRPGLFSEVCAVLADLHCN 143 (272)
Q Consensus 117 T~Iev~~~--DRpGLL~~It~vL~~~g~~ 143 (272)
|.|||+++ ||| |...-..-+-.|-.
T Consensus 76 Y~LEVSSPGldRp--L~~~~~f~r~~G~~ 102 (150)
T PRK14638 76 YTLEVSSPGLDRP--LRGPKDYVRFTGKL 102 (150)
T ss_pred eEEEEeCCCCCCC--CCCHHHHHHhCCCE
Confidence 78999955 676 44444444444433
No 277
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.62 E-value=65 Score=21.55 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=26.8
Q ss_pred EEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087 29 VIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISS 62 (272)
Q Consensus 29 ~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T 62 (272)
.|.+.+. +.+|++.++...|.+.|++|.--...+
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4566664 678999999999999999997655433
No 278
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.33 E-value=69 Score=22.11 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=26.0
Q ss_pred EEEEEcC--CCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087 118 SIEFTGT--DRPGLFSEVCAVLADLHCNVVNAEIWT 151 (272)
Q Consensus 118 ~Iev~~~--DRpGLL~~It~vL~~~g~~I~~A~i~T 151 (272)
.|.+.|. ..+|++.++..+|.+.|++|....-.+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~ 38 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGA 38 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4455554 468999999999999999997665444
No 279
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=53.14 E-value=47 Score=22.60 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=24.0
Q ss_pred ecCCCcHHHHHHHHHHhCCceEEEEEEE
Q 024087 34 SVNKHGILLQVIQVLNDVNLVIKKAYIS 61 (272)
Q Consensus 34 s~DrpGLl~~v~~vL~d~gl~I~~A~I~ 61 (272)
.+|++|.+.++.++|.+.|++|.-...+
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 4689999999999999999999855443
No 280
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=52.63 E-value=65 Score=21.22 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=25.1
Q ss_pred EEEEEc---CCCcchHHHHHHHHHhCCCcEEEEE
Q 024087 118 SIEFTG---TDRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 118 ~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
.|.+.| .+.||++.++...|.+.|+++....
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~ 35 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS 35 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 345554 4779999999999999999997664
No 281
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=52.52 E-value=4.2e+02 Score=30.51 Aligned_cols=177 Identities=13% Similarity=0.097 Sum_probs=107.6
Q ss_pred CCEEEEEeCCCCCeEEEEEE-ecCCC--cHHHHHHHHHHhC-CceEEEEEE-EecCCEEEEEEEEEcCCCCC--CCcHHH
Q 024087 14 PPRVVIDNNTCADATVIKVD-SVNKH--GILLQVIQVLNDV-NLVIKKAYI-SSDGGWFMDVFNVIDCDGKK--IRDKEV 86 (272)
Q Consensus 14 ~p~V~i~n~~~~~~t~V~V~-s~Drp--GLl~~v~~vL~d~-gl~I~~A~I-~T~gg~~~dvF~V~d~~G~~--~~~~~~ 86 (272)
..++-+..+....+.-+.|+ -+|+- .+-.++-+.|.+. +....+-+. ++.+..+---|.+....+.. +..+.+
T Consensus 328 rvRlf~R~D~~grfvs~LVyvPrd~y~t~~r~~i~~~l~~~~~~~~~~~~~~~~e~~lar~~~~~~~~~~~~~~~d~~~l 407 (1528)
T PF05088_consen 328 RVRLFLRRDPFGRFVSCLVYVPRDRYNTELRERIQDILMEAFGGTSSEFYTYFSESPLARVHFIIRVDPGHEPDIDVEAL 407 (1528)
T ss_pred ceeEEEEEcCCCCEEEEEEEEehhhCCHHHHHHHHHHHHHHhCCEEEEEEEEecCCceEEEEEEEEeCCCCCCCCCHHHH
Confidence 35666666666665555554 44443 4677788887765 334444443 45677777667777665554 222333
Q ss_pred HHHHH-----------HHHhcccC--------------CC--------CC---------------ccceeee----CCCC
Q 024087 87 IDYIQ-----------QRLETDAS--------------FA--------PS---------------LRSSVGV----MPTE 114 (272)
Q Consensus 87 ~~~I~-----------~aL~~~~~--------------~~--------~~---------------~~~~v~~----~~~~ 114 (272)
.+.|. .+|..... ++ |. -+..+.+ ....
T Consensus 408 e~~l~~~~r~W~d~l~~~l~~~~g~~~~~~l~~~y~~aFp~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~ 487 (1528)
T PF05088_consen 408 EARLAEATRSWEDRLREALVERYGEEQGARLFQRYANAFPASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGP 487 (1528)
T ss_pred HHHHHHHHCCHHHHHHHHHHHhcChhhhHHHHHHHHHhCCHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCC
Confidence 33332 23322210 00 00 0112233 2334
Q ss_pred ceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC----C-eeEEEEEEEeCCCCCCCCCHHHHHHHHHHhccccc
Q 024087 115 EHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN----D-RAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLR 189 (272)
Q Consensus 115 ~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g----~-rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~ 189 (272)
..+.+.+....+|..|++|.-+|..+|+.|....-.... . ....-|++.. ..+..++.....+.+++.+.++..
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~-~~~~~~~~~~~~~~~~~a~~~v~~ 566 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQY-PDGDALDLDDIRERFEEAFEAVWN 566 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEec-CCCccccHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999887643332 2 2567799988 566666555666788888887776
Q ss_pred Cc
Q 024087 190 GY 191 (272)
Q Consensus 190 ~~ 191 (272)
+.
T Consensus 567 g~ 568 (1528)
T PF05088_consen 567 GR 568 (1528)
T ss_pred CC
Confidence 54
No 282
>PRK00907 hypothetical protein; Provisional
Probab=50.68 E-value=78 Score=24.23 Aligned_cols=63 Identities=14% Similarity=0.183 Sum_probs=42.8
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEE----EeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEI----WTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLF 185 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i----~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~ 185 (272)
.+.|.|.|.++++|...|..++..+........+ +..|.-..-.+.|+- +..++++.|=+.|.
T Consensus 17 ~fpiKVmG~a~~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~a-------ts~eQld~iY~~L~ 83 (92)
T PRK00907 17 TFELSAMGTAERGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRA-------ESREQYDAAHQALR 83 (92)
T ss_pred CCeEEEEEcCchhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence 4789999999999999999999998876655555 444433444444443 12566666655554
No 283
>PRK14644 hypothetical protein; Provisional
Probab=49.87 E-value=1.4e+02 Score=24.39 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=48.4
Q ss_pred HHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCCceeEEEEEc
Q 024087 45 IQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTG 123 (272)
Q Consensus 45 ~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~T~Iev~~ 123 (272)
..++..+|+.+.+..... .++|++-+|. |.. .+ +-++.+-++|...... .++....+.+||++
T Consensus 5 e~~~~~~g~el~dve~~~~~~~~~LrV~I--dk~--~i---ddC~~vSr~is~~LD~---------~d~i~~~Y~LEVSS 68 (136)
T PRK14644 5 EKLLEKFGNKINEIKIVKEDGDLFLEVIL--NSR--DL---KDIEELTKEISDFIDN---------LSVEFDFDSLDISS 68 (136)
T ss_pred hhhHHhcCCEEEEEEEEeCCCCEEEEEEE--CCC--CH---HHHHHHHHHHHHHhcc---------ccCCCCCeEEEEEC
Confidence 357889999999999887 5678886665 322 12 3345555555443210 12333577899995
Q ss_pred --CCCcchHHHHHHHHHhCCCc
Q 024087 124 --TDRPGLFSEVCAVLADLHCN 143 (272)
Q Consensus 124 --~DRpGLL~~It~vL~~~g~~ 143 (272)
.||| |- . ...-+-.|-.
T Consensus 69 PGldRp-L~-~-~~f~r~~G~~ 87 (136)
T PRK14644 69 PGFDMD-YE-T-DELENHIGEI 87 (136)
T ss_pred CCCCCC-CC-H-HHHHHhCCCe
Confidence 5999 33 3 3555555543
No 284
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.83 E-value=96 Score=22.38 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=25.9
Q ss_pred EEEEEE---ecCCCcHHHHHHHHHHhCCceEEEEE
Q 024087 28 TVIKVD---SVNKHGILLQVIQVLNDVNLVIKKAY 59 (272)
Q Consensus 28 t~V~V~---s~DrpGLl~~v~~vL~d~gl~I~~A~ 59 (272)
+.|+|. .++.||+++++..+|+..|++|---.
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~ 36 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLIT 36 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEe
Confidence 345552 46789999999999999999998653
No 285
>PRK11898 prephenate dehydratase; Provisional
Probab=49.04 E-value=92 Score=28.58 Aligned_cols=51 Identities=14% Similarity=0.121 Sum_probs=34.4
Q ss_pred eEEEEEEecC-CCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCC
Q 024087 27 ATVIKVDSVN-KHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGK 79 (272)
Q Consensus 27 ~t~V~V~s~D-rpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~ 79 (272)
.+-+.+..++ +||-|+++..+|.+.|+|+.+-.-.- ...|-+ .|+|. .+|.
T Consensus 196 ktslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y-~F~vd-~eg~ 249 (283)
T PRK11898 196 KTSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTY-FFFID-VEGH 249 (283)
T ss_pred eEEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccE-EEEEE-EEcc
Confidence 4555555544 69999999999999999998766442 344544 34443 3454
No 286
>PRK14645 hypothetical protein; Provisional
Probab=48.88 E-value=1.6e+02 Score=24.64 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=55.7
Q ss_pred CCCcHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCC
Q 024087 36 NKHGILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTE 114 (272)
Q Consensus 36 DrpGLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~ 114 (272)
+...+-..+..++..+|+.+.+..+... ++|.+-+|. ..++|..++- +-+..+-+.+.....- .++-.
T Consensus 7 ~~~~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~I-D~~~~~~v~l-ddC~~vSr~is~~LD~---------~d~i~ 75 (154)
T PRK14645 7 NNPDLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRI-DRKDEQPVTV-EDLERASRALEAELDR---------LDPIE 75 (154)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEE-ECCCCCCcCH-HHHHHHHHHHHHHhcc---------cccCC
Confidence 3445677788999999999999999874 568776555 3233433322 2344444444443210 01223
Q ss_pred ceeEEEEEcC--CCcchHHHHHHHHHhCCC
Q 024087 115 EHTSIEFTGT--DRPGLFSEVCAVLADLHC 142 (272)
Q Consensus 115 ~~T~Iev~~~--DRpGLL~~It~vL~~~g~ 142 (272)
..|.|||+++ ||| |...-...+-.|-
T Consensus 76 ~~Y~LEVSSPGldRp--L~~~~df~r~~G~ 103 (154)
T PRK14645 76 GEYRLEVESPGPKRP--LFTARHFERFAGL 103 (154)
T ss_pred CceEEEEeCCCCCCC--CCCHHHHHHhCCC
Confidence 5678999955 666 5555555555553
No 287
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=48.43 E-value=18 Score=25.48 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=23.9
Q ss_pred EEEEcC-CCcchHHHHHHHHHhCCCcEEEE
Q 024087 119 IEFTGT-DRPGLFSEVCAVLADLHCNVVNA 147 (272)
Q Consensus 119 Iev~~~-DRpGLL~~It~vL~~~g~~I~~A 147 (272)
+.|.+. +.||.+++|...|++.|++|-.-
T Consensus 4 vtv~~~~~~~~~~a~if~~La~~~InvDmI 33 (67)
T cd04914 4 IKVKAKDNENDLQQRVFKALANAGISVDLI 33 (67)
T ss_pred EEEecCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 344433 56999999999999999999888
No 288
>PRK08526 threonine dehydratase; Provisional
Probab=48.06 E-value=1.7e+02 Score=28.21 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=46.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe---c--CCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS---D--GGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T---~--gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.....+.|.-+||||-|.+++..+...+.||.+-+-.. . -+.+. +....+- .+++..+.|.+.|...
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~-~~~~~e~-----~~~~~~~~~~~~l~~~ 395 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAM-ISITLET-----KGKEHQEEIRKILTEK 395 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEE-EEEEEEe-----CCHHHHHHHHHHHHHC
Confidence 45678899999999999999999999999999876643 1 13232 2222222 2245677888888654
No 289
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=47.83 E-value=47 Score=27.45 Aligned_cols=50 Identities=12% Similarity=0.134 Sum_probs=39.6
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEE
Q 024087 24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNV 73 (272)
Q Consensus 24 ~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V 73 (272)
.....-+.+.-.||.|.|+++..++++.++||+.-..+- ..|.+--+..+
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi 119 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSI 119 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEE
Confidence 345567888999999999999999999999999887765 56666544443
No 290
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=47.26 E-value=89 Score=23.52 Aligned_cols=48 Identities=13% Similarity=0.078 Sum_probs=39.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEE
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVI 74 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~ 74 (272)
...+.+...++|+.|.++.++....|+.|.....++ ++|.+--.|.|.
T Consensus 3 qyqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~ 52 (86)
T COG3978 3 QYQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD 52 (86)
T ss_pred eEEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc
Confidence 357889999999999999999999999999988887 555444456654
No 291
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=46.46 E-value=71 Score=30.43 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=29.8
Q ss_pred CCCeEEEEEEec---CCCcHHHHHHHHHHhCCceEEE
Q 024087 24 CADATVIKVDSV---NKHGILLQVIQVLNDVNLVIKK 57 (272)
Q Consensus 24 ~~~~t~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~ 57 (272)
.++...|.|.+. ++||+++++..+|.+.|+||..
T Consensus 334 ~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~ 370 (401)
T TIGR00656 334 EEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM 370 (401)
T ss_pred eCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence 347888888885 7899999999999999999983
No 292
>PRK14643 hypothetical protein; Provisional
Probab=46.25 E-value=1.8e+02 Score=24.55 Aligned_cols=90 Identities=12% Similarity=0.129 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEc---CCC-CCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCCC
Q 024087 40 ILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVID---CDG-KKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPTE 114 (272)
Q Consensus 40 Ll~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d---~~G-~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~ 114 (272)
+-..+..++..+|+.+.+....+. ++|.+-+|. .+ ++| -.+ +-++.+-+.+...... .++-.
T Consensus 11 l~~l~~p~~~~~G~eL~die~~~~~~~~~lrV~I-d~~~~~~ggvtl---dDC~~vSr~is~~LD~---------~d~i~ 77 (164)
T PRK14643 11 INELVNKELEVLNLKVYEINNLKEFENDMIQILV-EDILQANKPLDF---DILIKANDLVSNKIDQ---------FIKTS 77 (164)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE-ecCCCcCCCcCH---HHHHHHHHHHHHHhCc---------cCCCC
Confidence 455667789999999999999885 567776554 32 233 233 2344444444443210 02334
Q ss_pred ceeEEEEEcC--CCcchHHHHHHHHHhCCCcE
Q 024087 115 EHTSIEFTGT--DRPGLFSEVCAVLADLHCNV 144 (272)
Q Consensus 115 ~~T~Iev~~~--DRpGLL~~It~vL~~~g~~I 144 (272)
..+.+||+++ ||| |...-..-+-.|-.|
T Consensus 78 ~~Y~LEVSSPGleRp--L~~~~df~r~~G~~V 107 (164)
T PRK14643 78 EKYLLEISSSGIEKQ--IRSQEELVKALNQWV 107 (164)
T ss_pred CCeEEEecCCCCCCC--CCCHHHHHHhcCCeE
Confidence 5788999965 565 444445545555443
No 293
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.23 E-value=96 Score=21.34 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=22.0
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCcE
Q 024087 118 SIEFTGT---DRPGLFSEVCAVLADLHCNV 144 (272)
Q Consensus 118 ~Iev~~~---DRpGLL~~It~vL~~~g~~I 144 (272)
.|.+.|. +.||+++++.++|.+.++++
T Consensus 2 ~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~ 31 (63)
T cd04920 2 AVSLVGRGIRSLLHKLGPALEVFGKKPVHL 31 (63)
T ss_pred EEEEECCCcccCccHHHHHHHHHhcCCceE
Confidence 4566665 67999999999999987765
No 294
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=45.98 E-value=53 Score=24.44 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=34.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
+...+.+...|...+ ..+...+...|..|...-.....|+ .|+++|++|+.+
T Consensus 59 ~~~~~~~~v~~~~~~-~~~~~~~~~~g~~v~~~~~~~~~g~---~~~~~DPdGn~i 110 (114)
T cd07261 59 GGSELAFMVDDGAAV-DALYAEWQAKGVKIIQEPTEMDFGY---TFVALDPDGHRL 110 (114)
T ss_pred CceEEEEEcCCHHHH-HHHHHHHHHCCCeEecCccccCCcc---EEEEECCCCCEE
Confidence 445666666664443 5667777889999876543333343 578999999965
No 295
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.94 E-value=89 Score=20.89 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=27.1
Q ss_pred EEEEEec---CCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087 29 VIKVDSV---NKHGILLQVIQVLNDVNLVIKKAYISS 62 (272)
Q Consensus 29 ~V~V~s~---DrpGLl~~v~~vL~d~gl~I~~A~I~T 62 (272)
.|.+.+. +++|++.++...|...|++|.-....+
T Consensus 3 lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 3 LIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 4666664 689999999999999999997665443
No 296
>PRK14634 hypothetical protein; Provisional
Probab=45.60 E-value=1.8e+02 Score=24.34 Aligned_cols=62 Identities=16% Similarity=0.146 Sum_probs=46.7
Q ss_pred chHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087 128 GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (272)
Q Consensus 128 GLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~ 191 (272)
-+-.-+..++.++|+.+...++...|....--+||-. ..|.+++ =..++.+-+++...|...
T Consensus 8 ~i~~l~~~~~~~~G~elvdve~~~~~~~~~lrV~ID~-~~g~~v~-lddC~~vSr~is~~LD~~ 69 (155)
T PRK14634 8 DLETLASATAADKGFELCGIQVLTHLQPMTLQVQIRR-SSGSDVS-LDDCAGFSGPMGEALEAS 69 (155)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCcEEEEEEEC-CCCCccc-HHHHHHHHHHHHHHhccc
Confidence 3455667788899999999999988877666788854 4565564 356788888888888764
No 297
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=45.33 E-value=19 Score=26.00 Aligned_cols=53 Identities=15% Similarity=0.153 Sum_probs=33.5
Q ss_pred CCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 125 DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 125 DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
-+||++++|..+|+++|+||...- + ++ ..-.|-+.. ..+.+ +.++.|.+.|..
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~--~-s~-~~isftv~~----~~~~~-~~l~~l~~el~~ 65 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIS--T-SE-VHVSMALHM----ENAED-TNLDAAVKDLQK 65 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEE--e-CC-CEEEEEEeh----hhcCh-HHHHHHHHHHHH
Confidence 569999999999999999998763 3 32 222333322 22222 255666666654
No 298
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=44.88 E-value=58 Score=22.76 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=24.4
Q ss_pred EEEEEcC--CCcchHHHHHHHHHhCCCcEEEEE
Q 024087 118 SIEFTGT--DRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 118 ~Iev~~~--DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
.|.+.|. -+||+++++.++|.+.|+++....
T Consensus 4 ~VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~ 36 (66)
T cd04915 4 IVSVIGRDLSTPGVLARGLAALAEAGIEPIAAH 36 (66)
T ss_pred EEEEECCCCCcchHHHHHHHHHHHCCCCEEEEE
Confidence 4555554 368999999999999999987643
No 299
>COG2892 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.72 E-value=75 Score=23.90 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcccCCCCCccceeeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCC
Q 024087 84 KEVIDYIQQRLETDASFAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLH 141 (272)
Q Consensus 84 ~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g 141 (272)
++..+.|.+++.......++.+..+.+.-..+..+|+|.+.|-.+|=+.+-..|+=.+
T Consensus 13 ee~AevIY~sv~~E~~~~~~~rSrv~l~~~~~rI~l~I~A~D~s~lRaa~nS~lRlI~ 70 (82)
T COG2892 13 EEVAEVIYRSVLPEHVEVPSRRSRVKLERDGNRIVLEIRAEDSSALRAAINSYLRLIK 70 (82)
T ss_pred HHHHHHHHHHhhHHHhccccccceeEEEecCCEEEEEEEecchHHHHHHHHHHHHHHH
Confidence 4566778777766543234445566776668899999999999999888887776433
No 300
>PRK14637 hypothetical protein; Provisional
Probab=44.72 E-value=1.8e+02 Score=24.16 Aligned_cols=91 Identities=7% Similarity=0.012 Sum_probs=54.2
Q ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCccceeeeCCC
Q 024087 35 VNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSLRSSVGVMPT 113 (272)
Q Consensus 35 ~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~~~~v~~~~~ 113 (272)
+.--|....+..++.++|+.+.+-.+.. .++|.+-+|. ..++|-.+ +.++.+-+++...... ...
T Consensus 5 ~~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~I-D~~~gV~i---ddC~~vSr~Is~~LD~---------~~~- 70 (151)
T PRK14637 5 KKDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVI-YSAGGVGL---DDCARVHRILVPRLEA---------LGG- 70 (151)
T ss_pred cccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEE-ECCCCCCH---HHHHHHHHHHHHHhcc---------ccc-
Confidence 3346888899999999999999999987 4567776655 32334232 3455555555443210 000
Q ss_pred CceeEEEEEcC--CCcchHHHHHHHHHhCC
Q 024087 114 EEHTSIEFTGT--DRPGLFSEVCAVLADLH 141 (272)
Q Consensus 114 ~~~T~Iev~~~--DRpGLL~~It~vL~~~g 141 (272)
...+.|||+++ ||| |...-..-+..|
T Consensus 71 ~~~y~LEVSSPGldRp--L~~~~~f~r~~G 98 (151)
T PRK14637 71 VRDVFLEVSSPGIERV--IKNAAEFSIFVG 98 (151)
T ss_pred ccCcEEEEeCCCCCCC--CCCHHHHHHhCC
Confidence 12357888855 666 334444444444
No 301
>PRK14631 hypothetical protein; Provisional
Probab=44.35 E-value=2e+02 Score=24.54 Aligned_cols=93 Identities=11% Similarity=0.099 Sum_probs=55.2
Q ss_pred cHHHHHHHHHHhCCceEEEEEEEec-CCEEEEEEEEEcC---------------CCCCCCcHHHHHHHHHHHhcccCCCC
Q 024087 39 GILLQVIQVLNDVNLVIKKAYISSD-GGWFMDVFNVIDC---------------DGKKIRDKEVIDYIQQRLETDASFAP 102 (272)
Q Consensus 39 GLl~~v~~vL~d~gl~I~~A~I~T~-gg~~~dvF~V~d~---------------~G~~~~~~~~~~~I~~aL~~~~~~~~ 102 (272)
.+...+..++..+|+.+.+..+... ++|.+-+|.=... .+..++- +.++.+-+.+......
T Consensus 9 ~i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvti-ddC~~vSr~is~~LD~-- 85 (174)
T PRK14631 9 ALTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGV-EDCVRVTQQVGAMLDV-- 85 (174)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCH-HHHHHHHHHHHHHhcc--
Confidence 4556677889999999999999874 5677766652210 0111221 2355555555543320
Q ss_pred CccceeeeCCCCceeEEEEEcC--CCcchHHHHHHHHHhCCCc
Q 024087 103 SLRSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCN 143 (272)
Q Consensus 103 ~~~~~v~~~~~~~~T~Iev~~~--DRpGLL~~It~vL~~~g~~ 143 (272)
.++-...|.|||+++ ||| |......-+-.|=.
T Consensus 86 -------~d~i~~~Y~LEVSSPGldRp--L~~~~df~r~~G~~ 119 (174)
T PRK14631 86 -------HDPISGEYALEVSSPGWDRP--FFQLEQLQGYIGQQ 119 (174)
T ss_pred -------cccCCCCeEEEEeCCCCCCc--CCCHHHHHHhCCCe
Confidence 022235678999965 666 55566666665544
No 302
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=43.50 E-value=1.7e+02 Score=28.17 Aligned_cols=68 Identities=13% Similarity=0.027 Sum_probs=44.6
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.....+.|.-+||||-|.+++..+...+.||.+-+-.- .+-....++......+ ++..+.|.++|...
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~-----~~h~~~i~~~L~~~ 391 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND-----KEDFAGLLERMAAA 391 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC-----HHHHHHHHHHHHHC
Confidence 45678899999999999999997777777999665442 2211122222222222 35667888888764
No 303
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=42.38 E-value=3e+02 Score=27.39 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=72.3
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC----C
Q 024087 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS----F 100 (272)
Q Consensus 25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~----~ 100 (272)
.....+.|.-+||||-|.+++.+|.. .||..-+-.-.+.....+|....-. +++..+.|.+.|..... +
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~-----~~~~~~~l~~~L~~~Gy~~~dl 395 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLS-----NPQERQEILARLNDGGYSVVDL 395 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeC-----CHHHHHHHHHHHHHcCCCeEEC
Confidence 35678899999999999999999997 4666554432222223344433322 23566778888866431 0
Q ss_pred CC------Cccceeee-C-CCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeC
Q 024087 101 AP------SLRSSVGV-M-PTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHN 153 (272)
Q Consensus 101 ~~------~~~~~v~~-~-~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g 153 (272)
.. ..+.-|+- . ...+--+..+.=+-|||-|-+.-.+|. -.-||..-+=--+|
T Consensus 396 s~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fperpgaL~~Fl~~l~-~~~~It~f~Yr~~~ 455 (499)
T TIGR01124 396 TDDELAKLHVRYMVGGRPPHVENERLYSFEFPERPGALLRFLNTLQ-GYWNISLFHYRNHG 455 (499)
T ss_pred CCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCCccHHHHHHHhcC-CCCceeeEEEecCC
Confidence 00 01111221 1 122344777889999998888766443 24477777775555
No 304
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=41.79 E-value=1.2e+02 Score=21.29 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=27.1
Q ss_pred EEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEEEEe
Q 024087 28 TVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAYISS 62 (272)
Q Consensus 28 t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A~I~T 62 (272)
+.|++.+ .+.+|++.++.++|.+.+++|.--...+
T Consensus 2 ~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 2 ALINIEGTGMVGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred EEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 3566643 4689999999999999999997665543
No 305
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.73 E-value=51 Score=23.83 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=34.4
Q ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhc
Q 024087 35 VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLET 96 (272)
Q Consensus 35 ~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~ 96 (272)
++.||++.++.++|.+.|++|-.-. +.. .--.|.|...+ ..+.+ +..+.|.+.|..
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~--~s~--~~isftv~~~~-~~~~~-~~~~~l~~el~~ 67 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS--TSE--TNVTVSLDPDP-NGLDP-DVLDALLDDLNQ 67 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE--eCC--CEEEEEEeCcc-cccch-HHHHHHHHHHHh
Confidence 4779999999999999999998663 322 12245555432 11222 234555555544
No 306
>PLN02550 threonine dehydratase
Probab=40.04 E-value=4.1e+02 Score=27.24 Aligned_cols=63 Identities=14% Similarity=0.308 Sum_probs=40.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcc
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFN 186 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~ 186 (272)
...+.+.-+||||-|.+++.+|... ||...+-.-.+..-+.+++... . .+++..+.|.++|..
T Consensus 417 ~~~~~v~ipd~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie-~-----~~~~~~~~i~~~l~~ 479 (591)
T PLN02550 417 EAVLATFMPEEPGSFKRFCELVGPM--NITEFKYRYSSEKEALVLYSVG-V-----HTEQELQALKKRMES 479 (591)
T ss_pred EEEEEEEcCCCCCHHHHHHHHhhhh--cceEEEEEecCCCceEEEEEEE-e-----CCHHHHHHHHHHHHH
Confidence 3578899999999999999999986 7776554332222233333322 1 245566666666654
No 307
>PRK14645 hypothetical protein; Provisional
Probab=39.72 E-value=2.2e+02 Score=23.74 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=46.3
Q ss_pred chHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087 128 GLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (272)
Q Consensus 128 GLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~ 191 (272)
-+-..+..++.++|+.+...++...|....-.+||-. ..|..++ =..++.+-+.+...|...
T Consensus 10 ~i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~-~~~~~v~-lddC~~vSr~is~~LD~~ 71 (154)
T PRK14645 10 DLQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDR-KDEQPVT-VEDLERASRALEAELDRL 71 (154)
T ss_pred HHHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEEC-CCCCCcC-HHHHHHHHHHHHHHhccc
Confidence 3566778899999999999999888766555677743 2355564 356788888888888764
No 308
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.39 E-value=1.3e+02 Score=20.74 Aligned_cols=36 Identities=14% Similarity=0.113 Sum_probs=27.4
Q ss_pred EEEEEec--CCCcHHHHHHHHHHhCCceEEEEEEEecC
Q 024087 29 VIKVDSV--NKHGILLQVIQVLNDVNLVIKKAYISSDG 64 (272)
Q Consensus 29 ~V~V~s~--DrpGLl~~v~~vL~d~gl~I~~A~I~T~g 64 (272)
.|.+.+. ..+|++.++..+|.+.|++|.-....+.+
T Consensus 3 ~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 3 IISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 4555554 46899999999999999999766655543
No 309
>PRK14636 hypothetical protein; Provisional
Probab=39.30 E-value=2.5e+02 Score=24.06 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=46.0
Q ss_pred hHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087 129 LFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (272)
Q Consensus 129 LL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~ 191 (272)
|-.-+..++.++|+.+...++...+....--+||-. ..|..++ =..++.+-+++...|...
T Consensus 7 i~~lvep~~~~~GleLvdve~~~~~~~~~lrV~ID~-~~~ggV~-lDDC~~vSr~Is~~LD~~ 67 (176)
T PRK14636 7 LTALIEPEAKALGLDLVRVAMFGGKSDPTLQIMAER-PDTRQLV-IEDCAALSRRLSDVFDEL 67 (176)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEcCCCCeEEEEEEEC-CCCCCcC-HHHHHHHHHHHHHHhccC
Confidence 556677889999999999999888777666777854 3334454 356788888888888764
No 310
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=39.02 E-value=53 Score=32.78 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=33.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCC
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGG 65 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg 65 (272)
.+.|.|.||.|+-.++...|...++|+..-.|...|.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~~ 38 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGR 38 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCCe
Confidence 4789999999999999999999999999999976543
No 311
>PRK02047 hypothetical protein; Provisional
Probab=38.89 E-value=1.7e+02 Score=22.13 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=47.5
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe----cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS----DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T----~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.+.++|.+.+.+++...+..++..+...+..+.|.+ .|.|.--...|+ +.+++.+..|-++|.+.
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~k~Ss~GkY~Svtv~v~------v~s~eq~~~iY~~L~~~ 84 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVR------ATSREQLDNIYRALTGH 84 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEEccCCCCeEEEEEEEEE------ECCHHHHHHHHHHHhhC
Confidence 488999999999999999999999877766666643 455544334443 23356778888888775
No 312
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=37.57 E-value=1.3e+02 Score=26.81 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEE----EEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccC
Q 024087 24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKK----AYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDAS 99 (272)
Q Consensus 24 ~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~----A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~ 99 (272)
..-..+|.+.+.|+.....++-.+|...|.++.. +++|..-|.+ .+.. .+ . ...+.++.+|+....
T Consensus 89 ~Gvaiive~lTDN~nRt~~~ir~~~~K~gg~l~~~gsv~~~F~~kG~i----~~~~-~~--~---~~d~~~e~aIe~Gae 158 (234)
T PF01709_consen 89 GGVAIIVECLTDNKNRTVSDIRSIFKKNGGSLGPSGSVSFMFERKGVI----EVSK-KD--L---DEDELMEDAIEAGAE 158 (234)
T ss_dssp TTEEEEEEEEES-HHHHHHHHHHHHHTTT-EEE-TTSSGGGEEEEEEE----EEEH-CC--S----HHHHHHHHHHHTES
T ss_pred CCcEEEEEEeCCCHhHHHHHHHHHHHHcCceeCCCCcceeeeeeeEEE----EEEe-CC--C---ChHHHHHHHHhCCCc
Confidence 3345688889999999999999999999998876 4555554433 3332 11 1 122344555554321
Q ss_pred CCCCccceeeeCCCCceeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087 100 FAPSLRSSVGVMPTEEHTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (272)
Q Consensus 100 ~~~~~~~~v~~~~~~~~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~ 150 (272)
++...... +++.+ .|.-|..|...|.+.|+.|..+++.
T Consensus 159 ---------Dve~~d~~--~~~~c--~p~~~~~v~~~L~~~g~~i~~~e~~ 196 (234)
T PF01709_consen 159 ---------DVEEDDGE--FEFIC--DPSDLSAVKKALEKKGYEIESAELE 196 (234)
T ss_dssp ---------EEEECTSE--EEEEE--EGGGHHHHHHHHHHTT---SEEEEE
T ss_pred ---------EeeecCCe--EEEEE--CHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 11111222 55555 4888999999999999999988874
No 313
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=37.48 E-value=1.3e+02 Score=22.21 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=35.2
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCC
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI 171 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i 171 (272)
...+-+...| +.+..+.|.+.|+++...-....+. ...||+.| +.|..+
T Consensus 62 ~~~~~f~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~~~D-PdG~~~ 110 (114)
T cd07247 62 GWLVYFAVDD----VDAAAARVEAAGGKVLVPPTDIPGV--GRFAVFAD-PEGAVF 110 (114)
T ss_pred eEEEEEEeCC----HHHHHHHHHHCCCEEEeCCcccCCc--EEEEEEEC-CCCCEE
Confidence 4456666777 7788888999999988764333222 25799999 889876
No 314
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.46 E-value=1.3e+02 Score=20.37 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=27.1
Q ss_pred EEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEE-EEEEe
Q 024087 118 SIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAV-VHVTD 164 (272)
Q Consensus 118 ~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dv-FyVtd 164 (272)
.|.+.|. ++||+++++..+|.+. +|.- -++|..-..+ |.|.+
T Consensus 3 lIsvvG~~~~~~~~v~~~i~~~L~~i--~i~~---i~~~~s~~~is~~V~~ 48 (64)
T cd04917 3 LVALIGNDISETAGVEKRIFDALEDI--NVRM---ICYGASNHNLCFLVKE 48 (64)
T ss_pred EEEEECCCccCCcCHHHHHHHHHHhC--CeEE---EEEecCccEEEEEEeH
Confidence 5666775 7899999999999864 3332 3444444444 55543
No 315
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=36.87 E-value=92 Score=23.04 Aligned_cols=50 Identities=14% Similarity=0.121 Sum_probs=33.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecC-CEEEEEEEEEcCCCCCC
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDG-GWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~g-g~~~dvF~V~d~~G~~~ 81 (272)
-+.+...+. +..+...|...|+.+..+-....+ .+....|++.|++|+.+
T Consensus 70 hi~~~~~~~---~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~v 120 (125)
T cd07253 70 DLCLITEPP---IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLI 120 (125)
T ss_pred eEEEEeccc---HHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEE
Confidence 444454443 888999999999998766544322 12234578999999865
No 316
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=35.88 E-value=1.7e+02 Score=28.79 Aligned_cols=51 Identities=12% Similarity=0.075 Sum_probs=36.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe--cCCEEEEEEEEEcCCCC
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS--DGGWFMDVFNVIDCDGK 79 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T--~gg~~~dvF~V~d~~G~ 79 (272)
.+-|.+..+|+||-|+++..+|...|+|+.+-.-.- ...|-+ .|+|. .+|.
T Consensus 16 KTSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY-~FFVD-~eg~ 68 (436)
T TIGR01268 16 KTSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEY-EFFVE-FDEA 68 (436)
T ss_pred eEEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccE-EEEEE-EecC
Confidence 566777779999999999999999999998765432 344544 35554 3454
No 317
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=35.86 E-value=3.9e+02 Score=29.27 Aligned_cols=44 Identities=5% Similarity=-0.003 Sum_probs=38.7
Q ss_pred EcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeC
Q 024087 122 TGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDH 165 (272)
Q Consensus 122 ~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~ 165 (272)
...-..|+++.|+.++.-+|+.+.++.+.+..+. ..-.|||+..
T Consensus 239 r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~ 283 (1002)
T PTZ00324 239 RRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGL 283 (1002)
T ss_pred cCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecC
Confidence 5567789999999999999999999999999544 7789999983
No 318
>PRK00341 hypothetical protein; Provisional
Probab=35.38 E-value=2e+02 Score=21.83 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=45.5
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe----cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS----DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T----~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
+.++|.+.+.+++...+..++..+. ....+.+.+ .|.|.--.+.|.- .+++.+..|-++|.+.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~~k~Ss~GkY~S~tv~i~~------~s~~q~~~iy~~L~~~ 84 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLAERQSSNGKYTTVQLHIVA------TDEDQLQDINSALRAT 84 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCcccceeeccCCCCEEEEEEEEEEE------CCHHHHHHHHHHHhhC
Confidence 8899999999999999999998776 666665542 4444443344432 3356778888888775
No 319
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=34.65 E-value=1.8e+02 Score=21.75 Aligned_cols=50 Identities=12% Similarity=0.017 Sum_probs=34.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
+...+.+...| +.++..-|...|..|...-..+..| .-.|+++|++|+.+
T Consensus 68 ~~~~~~~~v~d----~d~~~~~l~~~G~~v~~~~~~~~~g--~~~~~~~DPdG~~~ 117 (122)
T cd08355 68 GTQGVYVVVDD----VDAHYERARAAGAEILREPTDTPYG--SREFTARDPEGNLW 117 (122)
T ss_pred ceEEEEEEECC----HHHHHHHHHHCCCEEeeCccccCCC--cEEEEEECCCCCEE
Confidence 45567777776 4777778888999888654334333 23488999999864
No 320
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=34.35 E-value=1.2e+02 Score=22.27 Aligned_cols=41 Identities=22% Similarity=0.273 Sum_probs=30.4
Q ss_pred EEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEE
Q 024087 121 FTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVH 161 (272)
Q Consensus 121 v~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFy 161 (272)
+-+...+||=.+++..|...|..+...-=+.......-++|
T Consensus 9 lNgt~~~GlA~~~a~~L~~~Gf~v~~~~n~~~~~~~t~I~y 49 (90)
T PF13399_consen 9 LNGTGVSGLAARVADALRNRGFTVVEVGNAPSSDETTTIYY 49 (90)
T ss_pred EECcCCcCHHHHHHHHHHHCCCceeecCCCCCCCCCEEEEE
Confidence 34889999999999999999999977655554443333333
No 321
>PRK08639 threonine dehydratase; Validated
Probab=34.05 E-value=2.9e+02 Score=26.67 Aligned_cols=68 Identities=18% Similarity=0.059 Sum_probs=43.7
Q ss_pred CCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEe-cCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcc
Q 024087 25 ADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISS-DGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETD 97 (272)
Q Consensus 25 ~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T-~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~ 97 (272)
.....+.+.-+||||-|.+++..+...+.||.+-+-.- .+...-.++...+-. +++..+.|.+.|...
T Consensus 334 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~-----~~~h~~~i~~~L~~~ 402 (420)
T PRK08639 334 GLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELK-----DAEDYDGLIERMEAF 402 (420)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeC-----CHHHHHHHHHHHHHC
Confidence 35678899999999999999997777666998765431 111111222222222 234667888888774
No 322
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=33.92 E-value=92 Score=23.16 Aligned_cols=39 Identities=15% Similarity=0.304 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 41 LLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 41 l~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
+.++...|...|+.+...-.....|+. .+++.||+|+.+
T Consensus 84 v~~~~~~l~~~g~~~~~~~~~~~~g~~--~~~~~DPdG~~i 122 (125)
T cd07241 84 VDELTERLRADGYLIIGEPRTTGDGYY--ESVILDPEGNRI 122 (125)
T ss_pred HHHHHHHHHHCCCEEEeCceecCCCeE--EEEEECCCCCEE
Confidence 678888999999998863333344443 234889999865
No 323
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=33.55 E-value=1.6e+02 Score=21.93 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=34.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
...+.+...| +.++...|...|..|...-..+. |-.-.|++.|++|+.+
T Consensus 67 ~~~~~~~v~d----id~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~DP~G~~i 115 (119)
T cd08359 67 GLILNFEVDD----VDAEYERLKAEGLPIVLPLRDEP--WGQRHFIVRDPNGVLI 115 (119)
T ss_pred eEEEEEEECC----HHHHHHHHHhcCCCeeeccccCC--CcceEEEEECCCCCEE
Confidence 3456666665 77888999999999886543332 3334578899999864
No 324
>PLN02317 arogenate dehydratase
Probab=33.03 E-value=2.3e+02 Score=27.47 Aligned_cols=35 Identities=17% Similarity=0.203 Sum_probs=29.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEE
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYIS 61 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~ 61 (272)
.|-|.+.-+|+||-|+++..+|+..|+|+.+-.-.
T Consensus 283 KTSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESR 317 (382)
T PLN02317 283 KTSIVFSLEEGPGVLFKALAVFALRDINLTKIESR 317 (382)
T ss_pred cEEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEee
Confidence 46666666899999999999999999999987643
No 325
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=32.45 E-value=1e+02 Score=22.08 Aligned_cols=48 Identities=19% Similarity=0.130 Sum_probs=34.0
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
...+.+...| +.++...|..+|+.+....-- ++....|++.|++|+.+
T Consensus 65 ~~~~~~~v~d----~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~~~DP~G~~i 112 (114)
T cd07245 65 DDHIAFRVDD----LDAFRARLKAAGVPYTESDVP---GDGVRQLFVRDPDGNRI 112 (114)
T ss_pred cceEEEEeCC----HHHHHHHHHHcCCCcccccCC---CCCccEEEEECCCCCEE
Confidence 3456666666 788899999999998765421 22234578899999865
No 326
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=31.77 E-value=89 Score=22.72 Aligned_cols=31 Identities=16% Similarity=0.282 Sum_probs=25.3
Q ss_pred eEEEEEcCC---CcchHHHHHHHHHhCCCcEEEE
Q 024087 117 TSIEFTGTD---RPGLFSEVCAVLADLHCNVVNA 147 (272)
Q Consensus 117 T~Iev~~~D---RpGLL~~It~vL~~~g~~I~~A 147 (272)
+.|||...| .+|.-++|..+|++++++|..=
T Consensus 2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K 35 (71)
T cd04910 2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAK 35 (71)
T ss_pred eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEE
Confidence 356776664 4888999999999999999876
No 327
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=31.50 E-value=84 Score=31.15 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=31.2
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEE
Q 024087 24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYI 60 (272)
Q Consensus 24 ~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I 60 (272)
..+.+-|.+..+|+||-|+++-.+|...|+|+.+-.-
T Consensus 28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLThIES 64 (464)
T TIGR01270 28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINILHLES 64 (464)
T ss_pred CCceEEEEEECCCCchHHHHHHHHHHHCCCCEEEEEC
Confidence 3456677777799999999999999999999987654
No 328
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=30.73 E-value=1.3e+02 Score=22.20 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=32.9
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
..+.+...| +.++..-|...|+.+...-.... |..-.|++.|++|+.+
T Consensus 59 ~~i~~~v~d----~~~~~~~l~~~G~~~~~~~~~~~--~g~~~~~~~DP~Gn~i 106 (112)
T cd07238 59 PDLSIEVDD----VDAALARAVAAGFAIVYGPTDEP--WGVRRFFVRDPFGKLV 106 (112)
T ss_pred CEEEEEeCC----HHHHHHHHHhcCCeEecCCccCC--CceEEEEEECCCCCEE
Confidence 355566665 56777888999999876433223 3345689999999865
No 329
>PRK06635 aspartate kinase; Reviewed
Probab=30.47 E-value=75 Score=30.31 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=29.8
Q ss_pred CCeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEE
Q 024087 25 ADATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKA 58 (272)
Q Consensus 25 ~~~t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A 58 (272)
++...|.|.+ ++.||.++++.++|.+.|+||.-.
T Consensus 338 ~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i 374 (404)
T PRK06635 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI 374 (404)
T ss_pred CCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence 3678888876 689999999999999999999764
No 330
>PRK00341 hypothetical protein; Provisional
Probab=30.00 E-value=2e+02 Score=21.79 Aligned_cols=33 Identities=18% Similarity=0.173 Sum_probs=27.7
Q ss_pred eEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEE
Q 024087 117 TSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIW 150 (272)
Q Consensus 117 T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~ 150 (272)
+.+.|.|.+.++|...|.+++..+. .+....+.
T Consensus 18 ~~~KViG~~~~~~~~~V~~iv~~~~-~~~~~~~~ 50 (91)
T PRK00341 18 YPIKVIGDTGVGFKDLVIEILQKHA-DVDLSTLA 50 (91)
T ss_pred ccEEEEEcCchhHHHHHHHHHHHhC-CCccccee
Confidence 7899999999999999999998776 66555443
No 331
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=29.53 E-value=1.9e+02 Score=20.99 Aligned_cols=48 Identities=13% Similarity=0.058 Sum_probs=33.3
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
...+.+...| +.++...|.++|+.+...-....++ ..|++.|++|+.+
T Consensus 68 ~~~~~~~v~d----i~~~~~~l~~~g~~~~~~~~~~~~~---~~~~~~DP~G~~i 115 (119)
T cd07263 68 TPGLVLATDD----IDATYEELKARGVEFSEEPREMPYG---TVAVFRDPDGNLF 115 (119)
T ss_pred ceEEEEEehH----HHHHHHHHHhCCCEEeeccccCCCc---eEEEEECCCCCEE
Confidence 3355555555 7888899999999888655212223 4689999999864
No 332
>PRK05925 aspartate kinase; Provisional
Probab=29.09 E-value=5.6e+02 Score=25.11 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=61.4
Q ss_pred CeEEEEEEec-CCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCCCcHHHHHHHHHHHhcccCCCCCc
Q 024087 26 DATVIKVDSV-NKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKIRDKEVIDYIQQRLETDASFAPSL 104 (272)
Q Consensus 26 ~~t~V~V~s~-DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~~~~~~~~~I~~aL~~~~~~~~~~ 104 (272)
+.+.|++.+. ..+|.+.++..+|.+.|++|--.. ++..+ + .|.+...+- . +...+.|...|....
T Consensus 299 ~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i~-s~~~s--i-s~~i~~~~~---~-~~~~~~l~~~l~~~~------ 364 (440)
T PRK05925 299 NQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLVM-AQNLG--V-YFTIDDDDI---S-EEYPQHLTDALSAFG------ 364 (440)
T ss_pred CEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEEe-ccCCE--E-EEEEechhc---c-HHHHHHHHHHhcCCc------
Confidence 4567777543 257889999999999999996442 22111 1 355543221 1 123333443333211
Q ss_pred cceeeeCCCCceeEEEEEcC--CCcchHHHHHHHHHhCCCcEEE
Q 024087 105 RSSVGVMPTEEHTSIEFTGT--DRPGLFSEVCAVLADLHCNVVN 146 (272)
Q Consensus 105 ~~~v~~~~~~~~T~Iev~~~--DRpGLL~~It~vL~~~g~~I~~ 146 (272)
.+. -..+...|.+.|. -.+|+++.+..+|.+.|+||..
T Consensus 365 --~i~--~~~~~a~VsvVG~gm~~~~v~~~~~~aL~~~~Ini~~ 404 (440)
T PRK05925 365 --TVS--CEGPLALITMIGAKLASWKVVRTFTEKLRGYQTPVFC 404 (440)
T ss_pred --eEE--EECCEEEEEEeCCCcccccHHHHHHHHHhhCCCCEEE
Confidence 111 1123456777775 2388999999999999999955
No 333
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=28.96 E-value=1.3e+02 Score=22.18 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCcEEEEEEEeeCCe-eEEEEEEEeCCCCCCCC
Q 024087 130 FSEVCAVLADLHCNVVNAEIWTHNDR-AAAVVHVTDHSTGYAIK 172 (272)
Q Consensus 130 L~~It~vL~~~g~~I~~A~i~T~g~r-v~dvFyVtd~~~G~~i~ 172 (272)
+.++.+.|.+.|+.+...-....+.+ ....||+.| +.|..++
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~D-PdG~~ve 121 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRD-PDGNLIE 121 (125)
T ss_pred HHHHHHHHHHCCceeecCcccccCCCCCccEEEEEC-CCCCEEE
Confidence 88899999999999876554433322 345689999 8898763
No 334
>PF09843 DUF2070: Predicted membrane protein (DUF2070); InterPro: IPR019204 This domain of unknown function is found in various bacterial and archael hypothetical proteins, as well as in prokaryotic polyketide synthase.
Probab=28.91 E-value=3.6e+02 Score=22.81 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=51.2
Q ss_pred EEEEEeCCCCCeEEEEEEecC-CCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc---CCCCCCCcHHHHHHHH
Q 024087 16 RVVIDNNTCADATVIKVDSVN-KHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID---CDGKKIRDKEVIDYIQ 91 (272)
Q Consensus 16 ~V~i~n~~~~~~t~V~V~s~D-rpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d---~~G~~~~~~~~~~~I~ 91 (272)
.+.+-....+....|.+++-| .|||-..+...+.+. +-.+.+.|.+-.++..-.... +-|..+..+++.+.++
T Consensus 64 ~~~~v~~~g~~~~lv~~DsNNm~~~lr~~i~~~~~~~---~d~~ev~TTDtH~~~~~~~g~~y~~vG~~~~~~~i~~~~~ 140 (179)
T PF09843_consen 64 SALVVEVGGQRSALVLADSNNMEPGLREKIREALGDV---VDEVEVMTTDTHFVNGESGGNGYWPVGPLIPPREIIESRR 140 (179)
T ss_pred EEEEEEeCCcEEEEEEEECCCCCHHHHHHHHHHHhhh---cceeEEecCcccEEccEECCccceeccccCCHHHHHHHHH
Confidence 344444445566677788888 889999999999998 677888886655554433222 4455555556666666
Q ss_pred HHHhcc
Q 024087 92 QRLETD 97 (272)
Q Consensus 92 ~aL~~~ 97 (272)
.+....
T Consensus 141 ~~~~~A 146 (179)
T PF09843_consen 141 EAVSEA 146 (179)
T ss_pred HHHHHH
Confidence 655543
No 335
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=28.54 E-value=3.4e+02 Score=22.39 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087 129 LFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (272)
Q Consensus 129 LL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~ 191 (272)
+-.-+..++..+|+.+...++...+....-.++|-. ..| + +=+.++.+-+.+...|...
T Consensus 9 i~~~~~~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~-~~g--v-~iddc~~~Sr~is~~LD~~ 67 (154)
T PRK00092 9 LTELIEPVVEALGYELVDVEYVKEGRDSTLRIYIDK-EGG--I-DLDDCEEVSRQISAVLDVE 67 (154)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEecCCCcEEEEEEEC-CCC--C-CHHHHHHHHHHHHHHhccc
Confidence 344567888999999999999998777666677743 334 4 3467888889998888764
No 336
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=27.76 E-value=1.1e+02 Score=21.38 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=29.8
Q ss_pred EEEEEe-cCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEc
Q 024087 29 VIKVDS-VNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVID 75 (272)
Q Consensus 29 ~V~V~s-~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d 75 (272)
.|+|.+ ++.||.++++.+.|++.|++|---..+ ... -.|.+..
T Consensus 3 ~vtv~~~~~~~~~~a~if~~La~~~InvDmI~~~-~~~---isFtv~~ 46 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLINVS-PEE---VIFTVDG 46 (67)
T ss_pred EEEEecCCCCccHHHHHHHHHHHcCCcEEEEEec-CCC---EEEEEch
Confidence 455543 356999999999999999999876333 222 2466653
No 337
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=27.48 E-value=1.6e+02 Score=23.82 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=30.0
Q ss_pred CCCeEEEEEEe---cCCCcHHHHHHHHHHhCCceEEEEE
Q 024087 24 CADATVIKVDS---VNKHGILLQVIQVLNDVNLVIKKAY 59 (272)
Q Consensus 24 ~~~~t~V~V~s---~DrpGLl~~v~~vL~d~gl~I~~A~ 59 (272)
++|+..+++.+ -|-+|+|+.+.+.|++.|+-|+--.
T Consensus 60 ~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavS 98 (128)
T COG3603 60 EKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVS 98 (128)
T ss_pred cCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEE
Confidence 45777788765 4889999999999999999998544
No 338
>PRK06291 aspartate kinase; Provisional
Probab=27.11 E-value=1.9e+02 Score=28.40 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=29.8
Q ss_pred CCceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEE
Q 024087 113 TEEHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 113 ~~~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~ 148 (272)
..+...|.+.+. +.||+++++..+|.++|++|....
T Consensus 318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIs 356 (465)
T PRK06291 318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMIS 356 (465)
T ss_pred eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEE
Confidence 344677888765 789999999999999999998753
No 339
>PRK14631 hypothetical protein; Provisional
Probab=26.81 E-value=4e+02 Score=22.71 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCC----------------CCCCCCCHHHHHHHHHHhcccccCcc
Q 024087 129 LFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHS----------------TGYAIKDPKRLSTIKELLFNVLRGYD 192 (272)
Q Consensus 129 LL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~----------------~G~~i~d~~~l~~i~~~L~~~L~~~~ 192 (272)
+-.-+..++..+|+.+...++...+.+..--+||.. . .+..++ =+.++.+-+++...|...
T Consensus 10 i~~li~p~~~~~G~eLvdve~~~~~~~~~LrV~ID~-~~~~~~~~~~~~~~~~~~~~gvt-iddC~~vSr~is~~LD~~- 86 (174)
T PRK14631 10 LTDIIAPAVAACGVDLWGIEFLPQGKRSLLRIYIDR-LVEENAEPVINEDGEVEQGRGIG-VEDCVRVTQQVGAMLDVH- 86 (174)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCceEEEEEEec-CcccccccccccccccccCCCcC-HHHHHHHHHHHHHHhccc-
Confidence 445667788999999999999998877666677742 1 123454 356788888998888864
Q ss_pred cccccc--ccCCCCCCcCCCcchhhhhcccchhhHh
Q 024087 193 DFRKAK--TSLSPPGIMNRERRLHQIMFDDRDYERV 226 (272)
Q Consensus 193 ~~~~~~--~~~~~~~~~h~~rrlhq~m~~~~~~e~~ 226 (272)
++-... -.|+++|. +|.|.. .+||.|+
T Consensus 87 d~i~~~Y~LEVSSPGl---dRpL~~----~~df~r~ 115 (174)
T PRK14631 87 DPISGEYALEVSSPGW---DRPFFQ----LEQLQGY 115 (174)
T ss_pred ccCCCCeEEEEeCCCC---CCcCCC----HHHHHHh
Confidence 332111 12333563 666533 4556664
No 340
>PRK08210 aspartate kinase I; Reviewed
Probab=26.66 E-value=94 Score=29.72 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=29.3
Q ss_pred CceeEEEEEcCCC-cchHHHHHHHHHhCCCcEEEEEE
Q 024087 114 EEHTSIEFTGTDR-PGLFSEVCAVLADLHCNVVNAEI 149 (272)
Q Consensus 114 ~~~T~Iev~~~DR-pGLL~~It~vL~~~g~~I~~A~i 149 (272)
.+-..|+|.+.+. ||.+++|..+|.+.|+||.....
T Consensus 269 ~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~ 305 (403)
T PRK08210 269 SNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINI 305 (403)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEe
Confidence 3455677776665 99999999999999999988733
No 341
>PRK03094 hypothetical protein; Provisional
Probab=26.41 E-value=1.6e+02 Score=22.09 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCcEEEEE
Q 024087 130 FSEVCAVLADLHCNVVNAE 148 (272)
Q Consensus 130 L~~It~vL~~~g~~I~~A~ 148 (272)
|++|...|.+.|..|+..+
T Consensus 10 Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred cHHHHHHHHHCCCEEEecC
Confidence 6889999999999997654
No 342
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.25 E-value=67 Score=23.62 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=22.4
Q ss_pred cCCCcHHHHHHHHHHhCCceEEEEE
Q 024087 35 VNKHGILLQVIQVLNDVNLVIKKAY 59 (272)
Q Consensus 35 ~DrpGLl~~v~~vL~d~gl~I~~A~ 59 (272)
++.||+++++..+|++.|++|-.-.
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE
Confidence 5789999999999999999998663
No 343
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=26.24 E-value=2.1e+02 Score=20.68 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=33.0
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCce-EEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLV-IKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~-I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
+...+.+.+.| +.++.+-|..+|+. +...-... +|-...+++.|++|+.+
T Consensus 58 ~~~~~~~~~~~----~~~~~~~l~~~G~~~~~~~~~~~--~~g~~~~~~~DP~G~~i 108 (112)
T cd08349 58 RGGSVYIEVED----VDALYAELKAKGADLIVYPPEDQ--PWGMREFAVRDPDGNLL 108 (112)
T ss_pred CcEEEEEEeCC----HHHHHHHHHHcCCcceecCccCC--CcccEEEEEECCCCCEE
Confidence 44566677766 78888999999998 43222112 22234577999999864
No 344
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=25.79 E-value=46 Score=26.91 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=32.8
Q ss_pred ceeEEEEEcC---CCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 115 EHTSIEFTGT---DRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 115 ~~T~Iev~~~---DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
.-..+.+.++ |-+|+|+.|.+.|+++|+.|-. ++|+. .|.+.|..
T Consensus 62 GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFa--vStyd---tDhiLVr~ 109 (128)
T COG3603 62 GWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFA--VSTYD---TDHILVRE 109 (128)
T ss_pred CeEEEEEeccccCCcchhhhhhhhhHhhCCccEEE--EEecc---CceEEEeh
Confidence 3445555555 8899999999999999999865 45555 35566654
No 345
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=25.27 E-value=2.6e+02 Score=20.07 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=35.5
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 24 CADATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 24 ~~~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
..+...+.+... =+..+..-|..+|+.|...-.....|. -.|++.|++|+.+
T Consensus 54 ~~~~~~~~~~v~----dv~~~~~~l~~~G~~~~~~~~~~~~g~--~~~~~~DPdG~~i 105 (108)
T PF12681_consen 54 PGGGFHLCFEVE----DVDALYERLKELGAEIVTEPRDDPWGQ--RSFYFIDPDGNRI 105 (108)
T ss_dssp SSSEEEEEEEES----HHHHHHHHHHHTTSEEEEEEEEETTSE--EEEEEE-TTS-EE
T ss_pred CCceeEEEEEEc----CHHHHHHHHHHCCCeEeeCCEEcCCCe--EEEEEECCCCCEE
Confidence 346666677663 467777888899999987555555553 3589999999864
No 346
>PRK14639 hypothetical protein; Provisional
Probab=24.96 E-value=3.9e+02 Score=21.87 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=42.2
Q ss_pred HHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087 133 VCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (272)
Q Consensus 133 It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~ 191 (272)
+..++.++|+.+...+....+.+..-.+||-. ..| ++ =+..+.+-+++...|...
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~-~~g--v~-iddC~~vSr~is~~LD~~ 57 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITK-EGG--VN-LDDCERLSELLSPIFDVE 57 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeC-CCC--CC-HHHHHHHHHHHHHHhccc
Confidence 45678899999999999998887777788843 334 43 456788888888888864
No 347
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=24.70 E-value=2.4e+02 Score=20.95 Aligned_cols=50 Identities=16% Similarity=0.055 Sum_probs=33.8
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
+...+.+...| +.++...+..+|..+...-.....| .-.++++|++|+.+
T Consensus 71 ~~~~~~~~v~d----i~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~~DPdG~~~ 120 (125)
T cd07264 71 AGFEIAFVTDD----VAAAFARAVEAGAVLVSEPKEKPWG--QTVAYVRDINGFLI 120 (125)
T ss_pred CcEEEEEEcCC----HHHHHHHHHHcCCEeccCCccCCCC--cEEEEEECCCCCEE
Confidence 33456666555 5677788889999987664333334 33578899999854
No 348
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=24.51 E-value=2.7e+02 Score=20.49 Aligned_cols=48 Identities=13% Similarity=0.047 Sum_probs=33.7
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 27 ATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 27 ~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
...+.+.+.| +.++..-|...|+.+...-....+++ .+++.|++|+.+
T Consensus 71 ~~~i~~~v~d----id~~~~~l~~~G~~~~~~~~~~~~~~---~~~~~DpdG~~i 118 (121)
T cd07233 71 FGHLAFAVDD----VYAACERLEEMGVEVTKPPGDGGMKG---IAFIKDPDGYWI 118 (121)
T ss_pred eEEEEEEeCC----HHHHHHHHHHCCCEEeeCCccCCCce---EEEEECCCCCEE
Confidence 3456666666 88899999999999986532222333 367889999864
No 349
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=24.46 E-value=2.9e+02 Score=20.26 Aligned_cols=50 Identities=8% Similarity=-0.128 Sum_probs=32.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 26 DATVIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
+...+.+.+.| +.++...|...|+.+...-.....| .-.+++.|++|+.+
T Consensus 68 ~~~~~~~~v~d----~~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~~DP~G~~~ 117 (122)
T cd07246 68 TPVSLHLYVED----VDATFARAVAAGATSVMPPADQFWG--DRYGGVRDPFGHRW 117 (122)
T ss_pred ceEEEEEEeCC----HHHHHHHHHHCCCeEecCccccccc--ceEEEEECCCCCEE
Confidence 45667777776 4455566678899887554333333 23578999999864
No 350
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=24.32 E-value=3.1e+02 Score=20.50 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=30.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHhCCceEEEEEEEecCCEEEEEEEEEcCCCCCC
Q 024087 29 VIKVDSVNKHGILLQVIQVLNDVNLVIKKAYISSDGGWFMDVFNVIDCDGKKI 81 (272)
Q Consensus 29 ~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A~I~T~gg~~~dvF~V~d~~G~~~ 81 (272)
-+.+...++. -+.++...|..+|+.|...-.....++. ..+++.|++|+.+
T Consensus 64 hiaf~v~~~~-dv~~~~~~l~~~G~~~~~~~~~~~~~~~-~~~~~~DPdG~~i 114 (122)
T cd07265 64 FMGFKVLDDA-DLEKLEARLQAYGVAVERIPAGELPGVG-RRVRFQLPSGHTM 114 (122)
T ss_pred EEEEEeCCHH-HHHHHHHHHHHCCCcEEEcccCCCCCCc-eEEEEECCCCCEE
Confidence 3443333332 3567888899999988753322222222 2477899999965
No 351
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=23.19 E-value=98 Score=26.21 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=27.2
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhCCceEEEE
Q 024087 28 TVIKVDSVNKHGILLQVIQVLNDVNLVIKKA 58 (272)
Q Consensus 28 t~V~V~s~DrpGLl~~v~~vL~d~gl~I~~A 58 (272)
..+.|.-+|+||-|..+.+=|+..|.||..-
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItI 36 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITI 36 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEE
Confidence 4567888999999999999999999999853
No 352
>PRK14637 hypothetical protein; Provisional
Probab=22.74 E-value=4.5e+02 Score=21.83 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=44.9
Q ss_pred cchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccC
Q 024087 127 PGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRG 190 (272)
Q Consensus 127 pGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~ 190 (272)
.|--..+..++.++|+.+...+....|....-.+||-. ..| ++ =..++.+-+++...|..
T Consensus 8 ~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~-~~g--V~-iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 8 LGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYS-AGG--VG-LDDCARVHRILVPRLEA 67 (151)
T ss_pred ccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC-CCC--CC-HHHHHHHHHHHHHHhcc
Confidence 57778899999999999999999998877666677743 334 43 34567777777777654
No 353
>PRK02047 hypothetical protein; Provisional
Probab=22.47 E-value=3.5e+02 Score=20.43 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=30.0
Q ss_pred eeEEEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEe
Q 024087 116 HTSIEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWT 151 (272)
Q Consensus 116 ~T~Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T 151 (272)
.+.+.+.|.+.+++...|.+++..+...+..+.+.+
T Consensus 16 ~~~~KvIG~~~~~~~~~v~~iv~~~~~~~~~~~i~~ 51 (91)
T PRK02047 16 DFPIKVMGKAHPEFADTIFKVVSVHDPEFDLEKIEE 51 (91)
T ss_pred CCeEEEEEeCcHhHHHHHHHHHHHhCCCCccCceEE
Confidence 478999999999999999999999877766655533
No 354
>PRK14638 hypothetical protein; Provisional
Probab=22.35 E-value=4.5e+02 Score=21.73 Aligned_cols=59 Identities=3% Similarity=-0.041 Sum_probs=43.7
Q ss_pred HHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087 130 FSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (272)
Q Consensus 130 L~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~ 191 (272)
-.-+..++.++|+.+...+....|....-.+||-. . ++.++ =+..+.+-+.+...|...
T Consensus 11 ~~~~~~i~~~~G~elvdve~~~~~~~~~lrV~ID~-~-~G~v~-lddC~~vSr~is~~LD~~ 69 (150)
T PRK14638 11 RKEAERIAEEQGLEIFDVQYRRESRGWVLRIIIDN-P-VGYVS-VRDCELFSREIERFLDRE 69 (150)
T ss_pred HHHHHHHHHHcCCEEEEEEEEecCCCcEEEEEEEC-C-CCCcC-HHHHHHHHHHHHHHhccc
Confidence 34566788999999999999988877666777843 3 33343 356788888888888764
No 355
>PRK14640 hypothetical protein; Provisional
Probab=21.64 E-value=4.7e+02 Score=21.64 Aligned_cols=59 Identities=10% Similarity=0.092 Sum_probs=44.1
Q ss_pred hHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCCCCHHHHHHHHHHhcccccCc
Q 024087 129 LFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAIKDPKRLSTIKELLFNVLRGY 191 (272)
Q Consensus 129 LL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i~d~~~l~~i~~~L~~~L~~~ 191 (272)
+..-+..++.++|+.+...+....+....-.+||-. ..| ++ =+..+.+-+++..+|...
T Consensus 8 i~~li~p~~~~~G~el~dve~~~~~~~~~lrV~ID~-~~g--v~-lddC~~vSr~is~~LD~~ 66 (152)
T PRK14640 8 LTDLLEAPVVALGFELWGIEFIRAGKHSTLRVYIDG-ENG--VS-VENCAEVSHQVGAIMDVE 66 (152)
T ss_pred HHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEEC-CCC--CC-HHHHHHHHHHHHHHhccc
Confidence 344667788999999999999888776666777743 345 43 456788889998888864
No 356
>PRK09034 aspartate kinase; Reviewed
Probab=21.62 E-value=1.2e+02 Score=29.80 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=34.7
Q ss_pred CCceeEEEEEc---CCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEe
Q 024087 113 TEEHTSIEFTG---TDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTD 164 (272)
Q Consensus 113 ~~~~T~Iev~~---~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd 164 (272)
..+-+.|.+.+ .++||++++|..+|+++|++|... + .....-.|+|.+
T Consensus 305 ~~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~-ss~~sis~~v~~ 355 (454)
T PRK09034 305 DKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---P-SGIDDLSIIIRE 355 (454)
T ss_pred cCCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---c-CCCcEEEEEEeH
Confidence 34456777775 578999999999999999999886 2 222334566654
No 357
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=20.60 E-value=1.8e+02 Score=21.41 Aligned_cols=50 Identities=18% Similarity=0.103 Sum_probs=32.7
Q ss_pred EEEEcCCCcchHHHHHHHHHhCCCcEEEEEEEeeCCeeEEEEEEEeCCCCCCC
Q 024087 119 IEFTGTDRPGLFSEVCAVLADLHCNVVNAEIWTHNDRAAAVVHVTDHSTGYAI 171 (272)
Q Consensus 119 Iev~~~DRpGLL~~It~vL~~~g~~I~~A~i~T~g~rv~dvFyVtd~~~G~~i 171 (272)
+-..+.+..-| ..+.+-|.+.|+.+.... +++.....-.||++| +.|..+
T Consensus 77 i~~~~~~~~dl-~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~y~~D-p~G~~i 126 (128)
T PF00903_consen 77 IAFLAFDVDDL-DAAYERLKAQGVEIVEEP-DRYYFGSGYSFYFRD-PDGNLI 126 (128)
T ss_dssp EEEEESSHHHH-HHHHHHHHHTTGEEEEEE-EEHSTTCEEEEEEEE-TTSEEE
T ss_pred EEEEeccHHHH-HHHHHHHhhcCccEEecC-CCCCCCCEEEEEEEC-CCCCEE
Confidence 34444444443 566788999999998764 444444445569999 788765
No 358
>PF01571 GCV_T: Aminomethyltransferase folate-binding domain; InterPro: IPR006222 This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase 2.1.2.10 from EC that catalyses the following reaction: (6S)-tetrahydrofolate + S-aminomethyldihydrolipoylprotein = (6R)-5,10-methylenetetrahydrofolate + NH3 + dihydrolipoylprotein ; GO: 0004047 aminomethyltransferase activity, 0006546 glycine catabolic process, 0005737 cytoplasm; PDB: 3TFJ_B 3TFI_B 3TFH_A 1YX2_B 3GIR_A 3A8K_D 3A8I_B 3A8J_C 1VLO_A 1WOO_A ....
Probab=20.09 E-value=5.3e+02 Score=21.63 Aligned_cols=100 Identities=11% Similarity=0.233 Sum_probs=56.9
Q ss_pred CeEEEEEEecCCCcHHHHHHH-HHHhCC-ceEEEEEEEecCCEEEEEEEEEc-CCCC-CC-Cc----HHHHHHHHHHHhc
Q 024087 26 DATVIKVDSVNKHGILLQVIQ-VLNDVN-LVIKKAYISSDGGWFMDVFNVID-CDGK-KI-RD----KEVIDYIQQRLET 96 (272)
Q Consensus 26 ~~t~V~V~s~DrpGLl~~v~~-vL~d~g-l~I~~A~I~T~gg~~~dvF~V~d-~~G~-~~-~~----~~~~~~I~~aL~~ 96 (272)
+..+|.|.++|+..+|..++. -+..+. -....+-+.+..|.+++-++|.. .+.. .+ .+ +...+.|++-+..
T Consensus 6 ~~~~i~v~G~Da~~fLq~~~t~di~~l~~g~~~~~~~l~~~G~v~~d~~v~~~~~~~~~l~~~~~~~~~~~~~L~~~~~~ 85 (211)
T PF01571_consen 6 HRGVIRVSGPDAAKFLQGLLTNDISKLPPGQARYTLFLNPKGRVLDDFFVYRLGDDEFLLIVPASAADALLEWLKKYILR 85 (211)
T ss_dssp TSEEEEEESTTHHHHHHHHBSS-GTTS-TTBEEEEEEE-TTS-EEEEEEEEEEETTEEEEEECCTCHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCHHHHHHHhhhhhHHhhCCCceeEEEEECCCCcEEEEEEEEeecCceEEEEecchhHHHHHHHHHHhccc
Confidence 468999999999888877543 333111 23444555555565555555543 3331 22 11 3455555554433
Q ss_pred ccCCCCCccceeee-CCCCceeEEEEEcCCCcchHHHHH
Q 024087 97 DASFAPSLRSSVGV-MPTEEHTSIEFTGTDRPGLFSEVC 134 (272)
Q Consensus 97 ~~~~~~~~~~~v~~-~~~~~~T~Iev~~~DRpGLL~~It 134 (272)
. .|.+ +.+.+...+.|.|+.-..+|.++.
T Consensus 86 ~---------~v~i~~~~~~~~~~~l~Gp~a~~~l~~~~ 115 (211)
T PF01571_consen 86 S---------DVEIEDVSDDLAVLGLQGPKAAEVLQKLF 115 (211)
T ss_dssp S---------S-EEEEETTTEEEEEEESTTHHHHHHHHS
T ss_pred c---------CcEEEEcccceeEEEEEcchhhHHHHHhc
Confidence 1 2333 334458899999999988887777
Done!