Your job contains 1 sequence.
>024088
MTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAF
ISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTA
HFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT
FHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL
VSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024088
(272 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2116992 - symbol:MEE49 "AT4G01560" species:370... 1138 1.9e-115 1
UNIPROTKB|A4FUG9 - symbol:BXDC5 "Uncharacterized protein"... 546 4.7e-70 2
UNIPROTKB|E2RLN4 - symbol:RPF1 "Uncharacterized protein" ... 544 7.7e-70 2
UNIPROTKB|Q9H9Y2 - symbol:RPF1 "Ribosome production facto... 543 9.8e-70 2
UNIPROTKB|Q5R631 - symbol:RPF1 "Ribosome production facto... 543 9.8e-70 2
UNIPROTKB|I3LN44 - symbol:RPF1 "Uncharacterized protein" ... 540 2.0e-69 2
MGI|MGI:1917535 - symbol:Rpf1 "ribosome production factor... 538 3.3e-69 2
UNIPROTKB|F1NRK2 - symbol:RPF1 "Uncharacterized protein" ... 534 9.8e-68 2
UNIPROTKB|Q8AVP1 - symbol:rpf1 "Ribosome production facto... 523 1.1e-66 2
ZFIN|ZDB-GENE-040625-177 - symbol:rpf1 "ribosome producti... 521 9.8e-66 2
RGD|1559755 - symbol:Rpf1 "ribosome production factor 1 h... 538 1.4e-64 2
WB|WBGene00009711 - symbol:F44G4.1 species:6239 "Caenorha... 499 3.7e-62 2
FB|FBgn0032408 - symbol:CG6712 species:7227 "Drosophila m... 466 3.3e-57 2
DICTYBASE|DDB_G0285829 - symbol:bxdc5 "brix domain-contai... 475 8.8e-57 2
SGD|S000001130 - symbol:RPF1 "Protein involved in assembl... 438 7.7e-52 2
CGD|CAL0003496 - symbol:RPF1 species:5476 "Candida albica... 410 3.3e-47 2
POMBASE|SPAC4F8.04 - symbol:SPAC4F8.04 "Brix domain prote... 458 2.2e-43 1
TAIR|locus:2026689 - symbol:IMP4 "AT1G63780" species:3702... 330 1.9e-39 2
ASPGD|ASPL0000077745 - symbol:AN8834 species:162425 "Emer... 419 2.9e-39 1
DICTYBASE|DDB_G0302418 - symbol:imp4 "U3 small nucleolar ... 306 6.5e-39 2
WB|WBGene00014083 - symbol:ZK795.3 species:6239 "Caenorha... 325 6.4e-37 2
FB|FBgn0039274 - symbol:CG11920 species:7227 "Drosophila ... 306 1.7e-36 2
ZFIN|ZDB-GENE-040718-474 - symbol:imp4 "IMP4, U3 small nu... 314 2.2e-36 2
POMBASE|SPAC19A8.07c - symbol:SPAC19A8.07c "U3 snoRNP-ass... 313 3.9e-35 2
UNIPROTKB|Q0VD01 - symbol:IMP4 "U3 small nucleolar ribonu... 298 3.4e-34 2
UNIPROTKB|Q96G21 - symbol:IMP4 "U3 small nucleolar ribonu... 289 1.1e-33 2
MGI|MGI:106572 - symbol:Imp4 "IMP4, U3 small nucleolar ri... 289 1.1e-33 2
RGD|1308463 - symbol:Imp4 "IMP4, U3 small nucleolar ribon... 289 1.1e-33 2
SGD|S000005019 - symbol:IMP4 "Component of the SSU proces... 291 4.3e-32 2
CGD|CAL0000877 - symbol:IMP4 species:5476 "Candida albica... 278 1.3e-30 2
GENEDB_PFALCIPARUM|PF08_0055 - symbol:PF08_0055 "u3 small... 201 4.9e-27 3
UNIPROTKB|Q8IB23 - symbol:PF08_0055 "U3 small nucleolar r... 201 4.9e-27 3
UNIPROTKB|G4ND46 - symbol:MGG_00977 "U3 small nucleolar r... 229 1.2e-26 2
ASPGD|ASPL0000059866 - symbol:AN0647 species:162425 "Emer... 170 5.9e-19 2
UNIPROTKB|G4NCH9 - symbol:MGG_01078 "Ribosome biogenesis ... 119 9.0e-05 1
MGI|MGI:2178445 - symbol:Ppan "peter pan homolog (Drosoph... 88 0.00021 2
>TAIR|locus:2116992 [details] [associations]
symbol:MEE49 "AT4G01560" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA;IMP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006626 "protein targeting to mitochondrion"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0009845 "seed germination" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0009933
"meristem structural organization" evidence=RCA] [GO:0010162 "seed
dormancy process" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0019915
"lipid storage" evidence=RCA] [GO:0048366 "leaf development"
evidence=RCA] [GO:0048825 "cotyledon development" evidence=RCA]
[GO:0050826 "response to freezing" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] InterPro:IPR004154 GO:GO:0005829
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009793 EMBL:AL161492
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 KO:K14846 HOGENOM:HOG000172062 OMA:IENQRVY
EMBL:AY050341 EMBL:AY086463 EMBL:BT020609 IPI:IPI00523270
PIR:C85020 RefSeq:NP_567213.1 UniGene:At.3828
ProteinModelPortal:Q9M125 STRING:Q9M125 PRIDE:Q9M125
EnsemblPlants:AT4G01560.1 GeneID:828136 KEGG:ath:AT4G01560
TAIR:At4g01560 InParanoid:Q9M125 PhylomeDB:Q9M125
ProtClustDB:CLSN2689273 ArrayExpress:Q9M125 Genevestigator:Q9M125
Uniprot:Q9M125
Length = 343
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 217/272 (79%), Positives = 234/272 (86%)
Query: 1 MTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAF 60
M P+TIENTRE DETVCRPDD+ELFA DADEF+ +L++ APK+L+TTCRFNS RGPA
Sbjct: 85 MIPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPAL 144
Query: 61 ISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTA 120
ISELLSVIPNSHY KRGTYDLKKI+EYA KKDFTS+IVVHTNRREPDALLIIGLP+GPTA
Sbjct: 145 ISELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTA 204
Query: 121 HFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
HFKLS LVLRKDIKNHGNPT H PELVLNNF TRLG+RVGR QSLFP P FRGRRVVT
Sbjct: 205 HFKLSNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVT 264
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 240
FHNQRDFIFFRHHRYIFETKESK S+K ++ + RLQECGPRFTLKL
Sbjct: 265 FHNQRDFIFFRHHRYIFETKESK-------------SDKGKEETIKPRLQECGPRFTLKL 311
Query: 241 VSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
V+LQHGTFDTKGGEFEWVHKPEMDTSRRRFFL
Sbjct: 312 VTLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343
>UNIPROTKB|A4FUG9 [details] [associations]
symbol:BXDC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 eggNOG:COG2136
GeneTree:ENSGT00550000074691 KO:K14846 CTD:80135
HOGENOM:HOG000172062 HOVERGEN:HBG083559 OMA:IENQRVY
OrthoDB:EOG40VVQ0 EMBL:DAAA02008080 EMBL:BC114877 IPI:IPI00706366
RefSeq:NP_001076886.1 UniGene:Bt.18412 STRING:A4FUG9
Ensembl:ENSBTAT00000010676 GeneID:513081 KEGG:bta:513081
InParanoid:A4FUG9 NextBio:20870694 Uniprot:A4FUG9
Length = 349
Score = 546 (197.3 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 107/211 (50%), Positives = 146/211 (69%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TI+N R DET+ P+D+E+ DEF+S + +PKILITT R
Sbjct: 102 PKTIDNQRVYDETIVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCE 161
Query: 63 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIPNSH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 162 QLSTVIPNSHVYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAH 220
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 211
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311
Score = 182 (69.1 bits), Expect = 4.7e-70, Sum P(2) = 4.7e-70
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 221 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>UNIPROTKB|E2RLN4 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
KO:K14846 CTD:80135 OMA:IENQRVY EMBL:AAEX03004866
RefSeq:XP_537096.1 ProteinModelPortal:E2RLN4
Ensembl:ENSCAFT00000032351 GeneID:479972 KEGG:cfa:479972
NextBio:20855075 Uniprot:E2RLN4
Length = 349
Score = 544 (196.6 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
Identities = 107/211 (50%), Positives = 145/211 (68%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TI+N R DET+ P+D+E+ DEF+S + +PKILITT R
Sbjct: 102 PKTIDNQRVYDETIVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCE 161
Query: 63 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIPNSH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP GPTAH
Sbjct: 162 QLSTVIPNSHVYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPSGPTAH 220
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHIPEVILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 211
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311
Score = 182 (69.1 bits), Expect = 7.7e-70, Sum P(2) = 7.7e-70
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 221 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>UNIPROTKB|Q9H9Y2 [details] [associations]
symbol:RPF1 "Ribosome production factor 1" species:9606
"Homo sapiens" [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR004154 GO:GO:0005730 GO:GO:0003723 GO:GO:0019843
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AL359762 eggNOG:COG2136
KO:K14846 EMBL:AF322053 EMBL:AK022537 EMBL:AL844170 EMBL:BC016051
EMBL:CR627468 EMBL:AL359584 IPI:IPI00292221 PIR:T50616
RefSeq:NP_079341.2 UniGene:Hs.481202 ProteinModelPortal:Q9H9Y2
STRING:Q9H9Y2 PhosphoSite:Q9H9Y2 DMDM:71153718 SWISS-2DPAGE:Q9H9Y2
PaxDb:Q9H9Y2 PRIDE:Q9H9Y2 DNASU:80135 Ensembl:ENST00000370654
Ensembl:ENST00000370656 GeneID:80135 KEGG:hsa:80135 UCSC:uc001djv.4
CTD:80135 GeneCards:GC01P084945 HGNC:HGNC:30350 HPA:HPA024642
neXtProt:NX_Q9H9Y2 PharmGKB:PA165752348 HOGENOM:HOG000172062
HOVERGEN:HBG083559 InParanoid:Q9H9Y2 OMA:IENQRVY OrthoDB:EOG40VVQ0
ChiTaRS:RPF1 GenomeRNAi:80135 NextBio:70391 Bgee:Q9H9Y2
CleanEx:HS_BXDC5 Genevestigator:Q9H9Y2 GermOnline:ENSG00000117133
Uniprot:Q9H9Y2
Length = 349
Score = 543 (196.2 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
Identities = 107/211 (50%), Positives = 144/211 (68%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TI+N R DET P+D+E+ DEF+S + +PKILITT R
Sbjct: 102 PKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCE 161
Query: 63 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIPNSH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 162 QLSTVIPNSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 211
FHNQRD+IFFR HRYIF +++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 311
Score = 182 (69.1 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 221 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>UNIPROTKB|Q5R631 [details] [associations]
symbol:RPF1 "Ribosome production factor 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 GO:GO:0019843 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
KO:K14846 CTD:80135 HOVERGEN:HBG083559 EMBL:CR860667
RefSeq:NP_001126626.1 UniGene:Pab.1862 ProteinModelPortal:Q5R631
GeneID:100173623 KEGG:pon:100173623 InParanoid:Q5R631
Uniprot:Q5R631
Length = 349
Score = 543 (196.2 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
Identities = 107/211 (50%), Positives = 144/211 (68%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TI+N R DET P+D+E+ DEF+S + +PKILITT R
Sbjct: 102 PKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCE 161
Query: 63 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIPNSH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 162 QLSTVIPNSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 211
FHNQRD+IFFR HRYIF +++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFRSEKKVGIQELGPR 311
Score = 182 (69.1 bits), Expect = 9.8e-70, Sum P(2) = 9.8e-70
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 221 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>UNIPROTKB|I3LN44 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
OMA:IENQRVY Ensembl:ENSSSCT00000032078 Uniprot:I3LN44
Length = 339
Score = 540 (195.1 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 106/211 (50%), Positives = 144/211 (68%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TI+N R DET+ P+D+E+ DEF+S + PKILITT R
Sbjct: 92 PKTIDNQRVYDETIVDPNDEEVAYDEATDEFASYFNRQTCPKILITTSDRPHGRTVRLCE 151
Query: 63 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIPNSH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 152 QLSTVIPNSHVYYRRGLA-LKKIIPQCISRDFTDLIVINEDRKIPNGLILSHLPNGPTAH 210
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT H PE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 211 FKMSSVRLRKEIKRRGKDPTEHTPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 270
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 211
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 271 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 301
Score = 182 (69.1 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 221 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 289 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 339
>MGI|MGI:1917535 [details] [associations]
symbol:Rpf1 "ribosome production factor 1 homolog (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR004154 MGI:MGI:1917535
GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 GeneTree:ENSGT00550000074691
KO:K14846 CTD:80135 HOGENOM:HOG000172062 HOVERGEN:HBG083559
OMA:IENQRVY OrthoDB:EOG40VVQ0 EMBL:AK171079 EMBL:BC028802
EMBL:BC056165 EMBL:BC089369 IPI:IPI00380313 RefSeq:NP_081608.1
RefSeq:NP_081647.2 UniGene:Mm.28128 ProteinModelPortal:Q7TND5
STRING:Q7TND5 PhosphoSite:Q7TND5 PaxDb:Q7TND5 PRIDE:Q7TND5
Ensembl:ENSMUST00000029838 GeneID:70285 KEGG:mmu:70285
UCSC:uc008rrl.2 InParanoid:Q7TND5 NextBio:331302 Bgee:Q7TND5
CleanEx:MM_BXDC5 Genevestigator:Q7TND5
GermOnline:ENSMUSG00000028187 Uniprot:Q7TND5
Length = 349
Score = 538 (194.4 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 105/211 (49%), Positives = 145/211 (68%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TI+N R DET P+D+E+ DEF+S + +PKILITT R
Sbjct: 102 PKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCE 161
Query: 63 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIP+SH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 162 QLSTVIPDSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 211
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311
Score = 182 (69.1 bits), Expect = 3.3e-69, Sum P(2) = 3.3e-69
Identities = 38/53 (71%), Positives = 44/53 (83%)
Query: 221 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>UNIPROTKB|F1NRK2 [details] [associations]
symbol:RPF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR004154 GO:GO:0005730
GO:GO:0003723 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GeneTree:ENSGT00550000074691
OMA:IENQRVY EMBL:AADN02012801 IPI:IPI00584227
Ensembl:ENSGALT00000014300 Uniprot:F1NRK2
Length = 347
Score = 534 (193.0 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 106/211 (50%), Positives = 142/211 (67%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TIEN R DET P+D+E+ DEF+ + PKILITT R F
Sbjct: 100 PKTIENQRIYDETTVDPNDEEVAFDIATDEFAPYFNRQTVPKILITTSDRPRGRTVRFCE 159
Query: 63 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIPNSH YY+RG LK+II +DFT +IV++ +R+ P+ L++ LPDGPTAH
Sbjct: 160 QLSTVIPNSHVYYRRGLA-LKRIIPQCIARDFTDLIVINEDRKIPNGLVLSHLPDGPTAH 218
Query: 122 FKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
F++S + LRK+IK G PT H+PE++LNNF TRLGH +GR+ SLFP P+F GR+V T
Sbjct: 219 FRMSSVRLRKEIKRKGKEPTEHVPEVILNNFTTRLGHSIGRMFASLFPHDPQFIGRQVAT 278
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 211
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 279 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 309
Score = 172 (65.6 bits), Expect = 9.8e-68, Sum P(2) = 9.8e-68
Identities = 36/53 (67%), Positives = 43/53 (81%)
Query: 221 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EW+HK EMDTSRR+F L
Sbjct: 297 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKFGEYEWIHKRREMDTSRRKFHL 347
>UNIPROTKB|Q8AVP1 [details] [associations]
symbol:rpf1 "Ribosome production factor 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] InterPro:IPR004154
GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 KO:K14846 HOVERGEN:HBG083559 EMBL:BC041557
RefSeq:NP_001080272.1 UniGene:Xl.1785 ProteinModelPortal:Q8AVP1
GeneID:379964 KEGG:xla:379964 CTD:379964 Uniprot:Q8AVP1
Length = 343
Score = 523 (189.2 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 102/211 (48%), Positives = 139/211 (65%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TIEN R DET P D+E+ DEF+ + PKILITT R F
Sbjct: 96 PKTIENQRVYDETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTE 155
Query: 63 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L S+IPNS YY+RG LKKII +D+T ++V++ +R+ P+ L++ LPDGPTAH
Sbjct: 156 QLSSIIPNSDVYYRRGLA-LKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAH 214
Query: 122 FKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK++K G PT H PE++LNNF TRLGH +GR+ SL+P P F GR+V T
Sbjct: 215 FKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVAT 274
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 211
FHNQRD+IFFR+HRY+F++++ G G +
Sbjct: 275 FHNQRDYIFFRYHRYLFKSEKKVGIQELGPR 305
Score = 173 (66.0 bits), Expect = 1.1e-66, Sum P(2) = 1.1e-66
Identities = 37/53 (69%), Positives = 43/53 (81%)
Query: 221 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHK EMDTSRR+F L
Sbjct: 293 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKRHEMDTSRRKFHL 343
>ZFIN|ZDB-GENE-040625-177 [details] [associations]
symbol:rpf1 "ribosome production factor 1 homolog
(S. cerevisiae)" species:7955 "Danio rerio" [GO:0005730 "nucleolus"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] InterPro:IPR004154
ZFIN:ZDB-GENE-040625-177 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GeneTree:ENSGT00550000074691 EMBL:CR854846 EMBL:CR848761
IPI:IPI00488496 Ensembl:ENSDART00000143436 Bgee:F1QQ11
Uniprot:F1QQ11
Length = 352
Score = 521 (188.5 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 102/211 (48%), Positives = 141/211 (66%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TIEN R DET P+D+E+ DEFS+ + PK+LITT R F
Sbjct: 105 PKTIENQRIYDETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCD 164
Query: 63 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIP+++ YY+RG LKK+I + FT ++V++ +R+ P+ +++ LPDGPTAH
Sbjct: 165 QLATVIPHAYVYYRRGLA-LKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAH 223
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK++K G NPT H PE++LNNF TRLGH +GRL +LFP P+F GR+V T
Sbjct: 224 FKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVAT 283
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 211
FHNQRDFIFFR HRYIF+ ++ G G +
Sbjct: 284 FHNQRDFIFFRFHRYIFKNEKKVGIQELGPR 314
Score = 166 (63.5 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 33/45 (73%), Positives = 38/45 (84%)
Query: 229 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
+QE GPRFTLKL SLQ GTFD+K GE+EWVHK EMD+SRR+F L
Sbjct: 308 IQELGPRFTLKLRSLQKGTFDSKFGEYEWVHKRHEMDSSRRKFHL 352
>RGD|1559755 [details] [associations]
symbol:Rpf1 "ribosome production factor 1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003723 "RNA
binding" evidence=IEA;ISO;ISS] [GO:0005730 "nucleolus"
evidence=IEA;ISO;ISS] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] InterPro:IPR004154
RGD:1559755 GO:GO:0005730 GO:GO:0003723 GO:GO:0019843 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 HOVERGEN:HBG083559 OrthoDB:EOG40VVQ0
EMBL:RNOR03268045 EMBL:BC086515 IPI:IPI00915544 UniGene:Rn.63896
ProteinModelPortal:Q5RJS9 STRING:Q5RJS9 InParanoid:Q5RJS9
ArrayExpress:Q5RJS9 Genevestigator:Q5RJS9 Uniprot:Q5RJS9
Length = 345
Score = 538 (194.4 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 105/211 (49%), Positives = 145/211 (68%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TI+N R DET P+D+E+ DEF+S + +PKILITT R
Sbjct: 102 PKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCE 161
Query: 63 ELLSVIPNSH-YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIP+SH YY+RG LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 162 QLSTVIPDSHVYYRRGLA-LKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKK 211
FHNQRD+IFFR HRYIF++++ G G +
Sbjct: 281 FHNQRDYIFFRFHRYIFKSEKKVGIQELGPR 311
Score = 138 (53.6 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
Identities = 28/40 (70%), Positives = 33/40 (82%)
Query: 221 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 260
S++KV +QE GPRFTLKL SLQ GTFD+K GE+EWVHK
Sbjct: 299 SEKKV--GIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHK 336
>WB|WBGene00009711 [details] [associations]
symbol:F44G4.1 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] InterPro:IPR004154 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
eggNOG:COG2136 EMBL:Z49910 GeneTree:ENSGT00550000074691 KO:K14846
HOGENOM:HOG000172062 PIR:B88252 PIR:T19409 RefSeq:NP_495918.1
ProteinModelPortal:P54073 STRING:P54073 PaxDb:P54073
EnsemblMetazoa:F44G4.1 GeneID:174434 KEGG:cel:CELE_F44G4.1
UCSC:F44G4.1 CTD:174434 WormBase:F44G4.1 InParanoid:P54073
OMA:RDEDATM NextBio:884024 Uniprot:P54073
Length = 384
Score = 499 (180.7 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 94/203 (46%), Positives = 132/203 (65%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+TIE+ RE D T+ +DDE+ DEF+ + +PK++IT F
Sbjct: 137 PKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFCF 196
Query: 63 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHF 122
EL IPNS + R LK IIE AK+++FT ++VVH +R++P+ ++ LP+GPTA+F
Sbjct: 197 ELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYF 256
Query: 123 KLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFH 182
K++ L +D+K G T H PE++LNNF TRLGH + R++ LFP P+F GRRVVTFH
Sbjct: 257 KINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFH 316
Query: 183 NQRDFIFFRHHRYIFETKESKGS 205
NQRD+IFFRHHRY F+ + SK +
Sbjct: 317 NQRDYIFFRHHRYEFKKEGSKAA 339
Score = 154 (59.3 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
Identities = 33/45 (73%), Positives = 35/45 (77%)
Query: 229 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
L E GPRFTL+L LQ GTFD K GEFEWV K EM+TSRRRFFL
Sbjct: 340 LLELGPRFTLRLKWLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384
>FB|FBgn0032408 [details] [associations]
symbol:CG6712 species:7227 "Drosophila melanogaster"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR004154 GO:GO:0005730 EMBL:AE014134
GO:GO:0003723 GO:GO:0019843 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
eggNOG:COG2136 EMBL:AY051683 RefSeq:NP_477479.1 UniGene:Dm.8705
ProteinModelPortal:Q9VKB4 STRING:Q9VKB4 PaxDb:Q9VKB4 PRIDE:Q9VKB4
EnsemblMetazoa:FBtr0080364 GeneID:34631 KEGG:dme:Dmel_CG6712
UCSC:CG6712-RA FlyBase:FBgn0032408 GeneTree:ENSGT00550000074691
InParanoid:Q9VKB4 KO:K14846 OMA:IFFRHYR OrthoDB:EOG4MPG5T
PhylomeDB:Q9VKB4 GenomeRNAi:34631 NextBio:789413 Bgee:Q9VKB4
GermOnline:CG6712 Uniprot:Q9VKB4
Length = 394
Score = 466 (169.1 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 100/204 (49%), Positives = 134/204 (65%)
Query: 5 TIENTREPDET-VCR---PDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAF 60
TIE+ RE D+T V D++EL D+FSS ++ PK+LIT + F
Sbjct: 143 TIESLREKDQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKF 202
Query: 61 ISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTA 120
EL + PN+ R +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTA
Sbjct: 203 GLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTA 262
Query: 121 HFKLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 179
HFKLS + L DIK +H T H PE++LNNF TRLG VGR++ +LF PEFRGRR V
Sbjct: 263 HFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAV 322
Query: 180 TFHNQRDFIFFRHHRYIFETKESK 203
TFHNQRD+IFFRHHRY F TKE K
Sbjct: 323 TFHNQRDYIFFRHHRYEF-TKEGK 345
Score = 140 (54.3 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 31/57 (54%), Positives = 40/57 (70%)
Query: 218 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWV--HKPEMDTSRRRFFL 272
E T + K + +L+E GPRFTLKL SLQ GTFD+K G++ W+ +K SRRRFFL
Sbjct: 339 EFTKEGKRV-KLRELGPRFTLKLRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394
>DICTYBASE|DDB_G0285829 [details] [associations]
symbol:bxdc5 "brix domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0042134 "rRNA primary
transcript binding" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0000027 "ribosomal large subunit assembly"
evidence=ISS] InterPro:IPR004154 dictyBase:DDB_G0285829
GO:GO:0005730 GenomeReviews:CM000153_GR InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0042134 GO:GO:0000027 EMBL:AAFI02000080 eggNOG:COG2136
KO:K14846 OMA:IENQRVY RefSeq:XP_638044.1 ProteinModelPortal:Q54MN3
STRING:Q54MN3 EnsemblProtists:DDB0232092 GeneID:8625308
KEGG:ddi:DDB_G0285829 InParanoid:Q54MN3 Uniprot:Q54MN3
Length = 317
Score = 475 (172.3 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 96/207 (46%), Positives = 131/207 (63%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGN-DADEFSSILKQGCAPKILITTCRFNSNRGPAFI 61
PRTIE+ R DET+ ++D+ F + DEF S G PKI++TT + ++ F
Sbjct: 72 PRTIESMRRADETIVDTENDKEFEEEINKDEFESYF-DGRVPKIVVTTNQRSTKEAVEFA 130
Query: 62 SELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
++PN ++ R Y LK+I+++ +D+T IIVV+ + D L I LP+GPTA
Sbjct: 131 QVFTKLLPNCEFFHRRKYHLKEIVQFCNNRDYTDIIVVNETKGIIDELTISHLPNGPTAV 190
Query: 122 FKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTF 181
F+L+ LV+ +DI G T H EL++NNF TRLGH +GR+ S+F Q P F+GRRV T
Sbjct: 191 FRLTNLVMPEDIPGGGEMTSHKAELIVNNFTTRLGHSIGRMFASMFAQDPNFKGRRVCTL 250
Query: 182 HNQRDFIFFRHHRYIFETKESKGSDAN 208
HNQRDFIFFR HRYIFE+KE DAN
Sbjct: 251 HNQRDFIFFRQHRYIFESKE----DAN 273
Score = 127 (49.8 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 222 QQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
+ K +QE GPRFTLKL SLQ G+F+T GE+ +H+ MD R++F L
Sbjct: 267 ESKEDANVQELGPRFTLKLKSLQKGSFNTSTGEYIHLHQHNMDVDRKKFVL 317
>SGD|S000001130 [details] [associations]
symbol:RPF1 "Protein involved in assembly and export of the
large ribosomal subunit" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA;IDA;IPI] [GO:0000055 "ribosomal large subunit export
from nucleus" evidence=IMP] [GO:0000027 "ribosomal large subunit
assembly" evidence=IPI] [GO:0000463 "maturation of LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042134 "rRNA primary
transcript binding" evidence=IPI] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
InterPro:IPR004154 SGD:S000001130 GO:GO:0005730 EMBL:BK006934
GO:GO:0030687 GO:GO:0000055 GO:GO:0000463 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0042134 GO:GO:0000027 GO:GO:0000466 EMBL:U00060
eggNOG:COG2136 GeneTree:ENSGT00550000074691 KO:K14846
HOGENOM:HOG000172062 OMA:IENQRVY PIR:S46718 RefSeq:NP_011956.1
ProteinModelPortal:P38805 DIP:DIP-6511N IntAct:P38805
MINT:MINT-634203 STRING:P38805 PaxDb:P38805 EnsemblFungi:YHR088W
GeneID:856488 KEGG:sce:YHR088W CYGD:YHR088w OrthoDB:EOG4JT3FB
NextBio:982188 Genevestigator:P38805 GermOnline:YHR088W
Uniprot:P38805
Length = 295
Score = 438 (159.2 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
Identities = 93/206 (45%), Positives = 131/206 (63%)
Query: 4 RTIENTREPDETVCRP---DDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGP-A 59
+TIENTR DET+ + D+D+L F+S + PKI +TT N+ +
Sbjct: 58 QTIENTRVYDETINKEVEGDEDDLMR-----YFNSNSNE--PPKIFLTT-NVNAKKSAYE 109
Query: 60 FISELLSVIPNSHYYKRGT-YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 118
F + L+ ++PN + KR Y LK+I + K++FT I++++ ++++ L I LP+GP
Sbjct: 110 FANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGP 169
Query: 119 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 178
T +FKLS V K I HG PT HIPEL+LNNF TRLG VGRL QS+ PQ+P+ GR+V
Sbjct: 170 TFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQV 229
Query: 179 VTFHNQRDFIFFRHHRYIFETKESKG 204
+T HNQRD+IFFR HRY+F+ E G
Sbjct: 230 ITLHNQRDYIFFRRHRYVFKDNERVG 255
Score = 117 (46.2 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 229 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
LQE GP+FTLKL LQ G + E EW HKPEMD +++F+L
Sbjct: 256 LQELGPQFTLKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295
>CGD|CAL0003496 [details] [associations]
symbol:RPF1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0042134 "rRNA primary transcript
binding" evidence=IEA] [GO:0000055 "ribosomal large subunit export
from nucleus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR004154 CGD:CAL0003496 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACQ01000023
EMBL:AACQ01000025 eggNOG:COG2136 KO:K14846 HOGENOM:HOG000172062
RefSeq:XP_720192.1 RefSeq:XP_720420.1 ProteinModelPortal:Q5AFD8
STRING:Q5AFD8 GeneID:3637890 GeneID:3638097 KEGG:cal:CaO19.10184
KEGG:cal:CaO19.2667 Uniprot:Q5AFD8
Length = 296
Score = 410 (149.4 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 84/206 (40%), Positives = 133/206 (64%)
Query: 3 PRTIENTREPDETVCRP-DDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPA-- 59
P TI++ R DET+ + D+ F F+++L++ PKIL+TT N+ + PA
Sbjct: 60 PDTIDSKRIYDETIAAEVEGDDEFQSY----FTNLLEE---PKILLTTSA-NAKK-PAYE 110
Query: 60 FISELLSVIPNSHYYKRGT-YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 118
F ++ +PN + KR Y ++ + +Y +DFT+++V++ ++++ + + +I LP+GP
Sbjct: 111 FADMIMDFLPNVTFIKRKKEYTMQDMAKYCSNRDFTALLVINEDKKKVNGITLINLPEGP 170
Query: 119 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 178
T +F ++ +V K IK HG ++PE+VLNNF +RLG VGRL QS+FP PE +GR+V
Sbjct: 171 TFYFSITSIVDGKRIKGHGKAGDYLPEIVLNNFNSRLGKTVGRLFQSIFPHKPELQGRQV 230
Query: 179 VTFHNQRDFIFFRHHRYIFETKESKG 204
+T HNQRD+IFFR HRYIF +E G
Sbjct: 231 ITLHNQRDYIFFRRHRYIFRNEEKVG 256
Score = 101 (40.6 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 221 SQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
+++KV LQE GP+FTLKL +Q G G+ W H+P+M+ +++F+L
Sbjct: 251 NEEKV--GLQELGPQFTLKLRRMQKGV----RGDVVWEHRPDMERDKKKFYL 296
>POMBASE|SPAC4F8.04 [details] [associations]
symbol:SPAC4F8.04 "Brix domain protein Rpf1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000027 "ribosomal
large subunit assembly" evidence=ISO] [GO:0000463 "maturation of
LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=ISO] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0042134 "rRNA primary transcript binding"
evidence=ISO] [GO:0042254 "ribosome biogenesis" evidence=ISO]
InterPro:IPR004154 PomBase:SPAC4F8.04 EMBL:CU329670 GO:GO:0005730
GO:GO:0000463 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0042134 GO:GO:0000027
GO:GO:0000466 GO:GO:0005732 eggNOG:COG2136 KO:K14846
HOGENOM:HOG000172062 OMA:IENQRVY OrthoDB:EOG4JT3FB PIR:T38834
RefSeq:NP_593868.1 ProteinModelPortal:O14180 STRING:O14180
EnsemblFungi:SPAC4F8.04.1 GeneID:2543503 KEGG:spo:SPAC4F8.04
NextBio:20804513 Uniprot:O14180
Length = 306
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 98/229 (42%), Positives = 144/229 (62%)
Query: 3 PRTIENTREPDETVCRPD-DDELFAGNDADEFSSIL-KQGCAPKILITTCRFNSNRGPAF 60
P TIE+ R DET+ D+EL A DEFS+ ++ PK+L+TT + S + F
Sbjct: 52 PATIESKRVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDF 111
Query: 61 ISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 119
SELL PN+ + KR G ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+
Sbjct: 112 ASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPS 171
Query: 120 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 179
+F LS L K+I NHG TGHIPEL++NNF+TRLG V R QSLF Q+P+ +GR+VV
Sbjct: 172 FYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVV 231
Query: 180 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITR 228
T H QRDF+FFR HRY F K S D G ++ T + +++ +
Sbjct: 232 TIHCQRDFLFFRRHRYAFREK-SNMPDGIGTGLQELGPRFTMRLRMVQK 279
>TAIR|locus:2026689 [details] [associations]
symbol:IMP4 "AT1G63780" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0005730 "nucleolus" evidence=TAS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=TAS] [GO:0006364 "rRNA processing" evidence=RCA;TAS]
[GO:0015030 "Cajal body" evidence=TAS] [GO:0016363 "nuclear matrix"
evidence=IDA] [GO:0000478 "endonucleolytic cleavage involved in
rRNA processing" evidence=RCA] [GO:0001510 "RNA methylation"
evidence=RCA] InterPro:IPR004154 EMBL:CP002684 GO:GO:0005730
GO:GO:0003676 GO:GO:0015030 GO:GO:0016363 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 GO:GO:0005732 EMBL:AC011622 HOGENOM:HOG000172063
KO:K14561 OMA:SHFPHGP EMBL:AC010852 EMBL:AY093002 EMBL:AY114605
EMBL:AY088147 IPI:IPI00528532 PIR:H96662 RefSeq:NP_176564.1
UniGene:At.43038 ProteinModelPortal:Q9S826 SMR:Q9S826 STRING:Q9S826
PRIDE:Q9S826 EnsemblPlants:AT1G63780.1 GeneID:842682
KEGG:ath:AT1G63780 TAIR:At1g63780 InParanoid:Q9S826
PhylomeDB:Q9S826 ProtClustDB:CLSN2682600 ArrayExpress:Q9S826
Genevestigator:Q9S826 Uniprot:Q9S826
Length = 294
Score = 330 (121.2 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 73/168 (43%), Positives = 102/168 (60%)
Query: 31 DEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKK 90
DE+++ + PKIL+TT R S F EL V PNS RG+ + +IIE A+
Sbjct: 73 DEYANATEAD--PKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETARS 130
Query: 91 KDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDI---KNHGNPTGHIPELV 147
DFT +I+VH +R PD L+I LP GPTA+F L +V R DI K+ G P L+
Sbjct: 131 HDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSIGKMPEQYPHLI 190
Query: 148 LNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 195
NNF T++G RVG +++ +FP +P+ +R+VTF NQ D+I FR+H Y
Sbjct: 191 FNNFTTQMGQRVGNILKHIFP-APKLDAKRIVTFSNQSDYISFRNHVY 237
Score = 107 (42.7 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 229 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
L+E GPRF L+L ++ GT + E EWV +P M+TS++R F+
Sbjct: 249 LKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTSKKRKFI 292
>ASPGD|ASPL0000077745 [details] [associations]
symbol:AN8834 species:162425 "Emericella nidulans"
[GO:0000055 "ribosomal large subunit export from nucleus"
evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0042134 "rRNA primary transcript binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030687 "preribosome,
large subunit precursor" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0004812
"aminoacyl-tRNA ligase activity" evidence=IEA] InterPro:IPR004154
EMBL:BN001303 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACD01000162 eggNOG:COG2136
KO:K14846 HOGENOM:HOG000172062 OrthoDB:EOG4JT3FB RefSeq:XP_682103.1
ProteinModelPortal:Q5AS96 STRING:Q5AS96
EnsemblFungi:CADANIAT00006223 GeneID:2868340 KEGG:ani:AN8834.2
OMA:SGQEWEW Uniprot:Q5AS96
Length = 435
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 98/239 (41%), Positives = 139/239 (58%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGT------YDLKKIIEYAKKKDFTSI 96
PKILITT ++ A I L + PNS Y +R + +++I ++A +++T++
Sbjct: 208 PKILITTSLNSTLHHEAEI--LTQLFPNSVYIRRTAHAHAHKFSIREIAKFASNREYTTL 265
Query: 97 IVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLG 156
I++ + ++P L I+ LP GP HF +S V K I HG PT H PEL+LNNF T LG
Sbjct: 266 IILQEDSKKPAGLDIVHLPKGPMFHFSISNWVEGKKIPGHGKPTEHWPELILNNFRTPLG 325
Query: 157 HRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIF-ETKESKGS--DANGKKAK 213
L ++LFP P+ GR+VVT HNQRD+IF R HRY+F E +E++ + A+GK+ K
Sbjct: 326 LLTAHLFRTLFPPQPDIEGRQVVTLHNQRDYIFVRRHRYVFREKRETEKAVVGADGKEIK 385
Query: 214 DAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
A+ +T LQE GPRFTLKL + G G E+EW K +M+ R F L
Sbjct: 386 GAEGIRTG-------LQELGPRFTLKLRRVDKGIQRASGQEWEW--KGKMEKKRTLFQL 435
>DICTYBASE|DDB_G0302418 [details] [associations]
symbol:imp4 "U3 small nucleolar ribonucleoprotein
protein" species:44689 "Dictyostelium discoideum" [GO:0034457
"Mpp10 complex" evidence=ISS] [GO:0030515 "snoRNA binding"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004154
dictyBase:DDB_G0302418 GenomeReviews:CM000152_GR GO:GO:0030515
EMBL:AAFI02000042 GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0034457
KO:K14561 OMA:SHFPHGP RefSeq:XP_002649153.1
EnsemblProtists:DDB0302419 GeneID:8623193 KEGG:ddi:DDB_G0302418
ProtClustDB:CLSZ2735584 Uniprot:C7G018
Length = 286
Score = 306 (112.8 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 63/153 (41%), Positives = 90/153 (58%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK+L+TT R S+R F EL + PNS RG + +K++++ + D T +++ H +
Sbjct: 82 PKVLVTTSREPSSRLIQFTKELRMLFPNSQKMNRGAHVVKELVDACRANDVTDLVIAHEH 141
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R EP L+I LP GPTA+F++ V+ DI P+ P L+ +NF T LG R +
Sbjct: 142 RGEPVGLVISHLPYGPTAYFEIKNCVMIHDIDEATPPSLAFPHLIFHNFTTPLGERTENI 201
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 195
++ LFP P+ RRVVTF N DFI FRHH Y
Sbjct: 202 LKYLFPV-PKDDSRRVVTFSNDNDFISFRHHIY 233
Score = 126 (49.4 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 218 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
EK + VI L+E GPRF LKL +Q GT D + EWV+KP M++++ R FL
Sbjct: 234 EKDGYKNVI--LKEIGPRFELKLYKIQLGTLDQDEADLEWVYKPYMNSTKNRLFL 286
>WB|WBGene00014083 [details] [associations]
symbol:ZK795.3 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR004154 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 eggNOG:COG2136 GeneTree:ENSGT00550000074987
HOGENOM:HOG000172063 KO:K14561 OMA:SHFPHGP EMBL:Z83246 PIR:T27998
RefSeq:NP_502404.1 ProteinModelPortal:O62518 SMR:O62518
IntAct:O62518 STRING:O62518 PaxDb:O62518 EnsemblMetazoa:ZK795.3.1
EnsemblMetazoa:ZK795.3.2 GeneID:178207 KEGG:cel:CELE_ZK795.3
UCSC:ZK795.3 CTD:178207 WormBase:ZK795.3 InParanoid:O62518
NextBio:900162 Uniprot:O62518
Length = 292
Score = 325 (119.5 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 71/196 (36%), Positives = 112/196 (57%)
Query: 6 IENTREPDETVCRPDDDELFAGND--ADEFSSILKQGCA----PKILITTCRFNSNRGPA 59
+EN + D + R D EL G+D ++ + + A PKI+ITT R S+R
Sbjct: 36 LENNTKIDYNL-RKDAIELAKGSDWGGQQYETDSEYRWAGAQDPKIVITTSRDPSSRLKM 94
Query: 60 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 119
F E+ + PN+ RG YD+K++++ +K +D T +I+ R PD +L+ LP GPT
Sbjct: 95 FAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPT 154
Query: 120 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 179
A F ++ +V+R DI N G + P L+ +N ++LGHR +++ LFP P+ +R++
Sbjct: 155 AFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPV-PKPDSKRII 213
Query: 180 TFHNQRDFIFFRHHRY 195
TF N D+I FRHH Y
Sbjct: 214 TFSNSEDYISFRHHVY 229
Score = 88 (36.0 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 229 LQECGPRFTLKLVSLQHGTFDT-KGGEFEWVHKPEMDTSRRRFFL 272
L E GPRF LK ++ GT +T E EWV + +T+R+R FL
Sbjct: 239 LTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>FB|FBgn0039274 [details] [associations]
symbol:CG11920 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
InterPro:IPR004154 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 eggNOG:COG2136 EMBL:AY060848
ProteinModelPortal:Q95SD3 SMR:Q95SD3 IntAct:Q95SD3 STRING:Q95SD3
PaxDb:Q95SD3 PRIDE:Q95SD3 FlyBase:FBgn0039274 InParanoid:Q95SD3
OrthoDB:EOG4WM39C ArrayExpress:Q95SD3 Bgee:Q95SD3 Uniprot:Q95SD3
Length = 298
Score = 306 (112.8 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 63/163 (38%), Positives = 97/163 (59%)
Query: 40 GCA-PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIV 98
GC PKI++TT S+R F+ EL +IPN+ RG Y L ++ + + T ++
Sbjct: 77 GCEDPKIMLTTSHNPSSRLKMFMKELRLIIPNAQQMNRGNYQLTTLMHACRANNVTDFLI 136
Query: 99 VHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHR 158
VH +R D+L++ LP GPTA F +S +V+R DI + G+ + P L+ NNF T +G R
Sbjct: 137 VHEHRGILDSLVVCHLPYGPTAFFNISDVVMRHDIPDIGHMSEQKPHLIFNNFKTPIGLR 196
Query: 159 VGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKE 201
++++ LFP P+ +RV++F N D I FRHH+Y + KE
Sbjct: 197 TVKILKHLFPV-PKENSQRVMSFLNHNDSIIFRHHQYKYVNKE 238
Score = 103 (41.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 229 LQECGPRFTLKLVSLQHGTFDT-KGGEFEWVHKPEMDTSRRR 269
L E GPRF+LKL ++ GT + K + EW+++P M+TS++R
Sbjct: 241 LTEVGPRFSLKLYQIKLGTLENIKAADTEWINRPYMNTSQKR 282
>ZFIN|ZDB-GENE-040718-474 [details] [associations]
symbol:imp4 "IMP4, U3 small nucleolar
ribonucleoprotein, homolog (yeast)" species:7955 "Danio rerio"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004154
ZFIN:ZDB-GENE-040718-474 GO:GO:0003676 GO:GO:0030529
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 CTD:92856 eggNOG:COG2136
GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4JHCG8
EMBL:CU041374 EMBL:BC075765 IPI:IPI00488146 RefSeq:NP_001002719.1
UniGene:Dr.19345 STRING:Q6DI25 Ensembl:ENSDART00000076742
GeneID:436992 KEGG:dre:436992 InParanoid:Q6DI25 NextBio:20831411
Uniprot:Q6DI25
Length = 291
Score = 314 (115.6 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 59/153 (38%), Positives = 93/153 (60%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PKI++TT R S+R F E+ + P + RG +++K ++ K + T +++VH
Sbjct: 83 PKIMVTTSRDPSSRLKMFAKEMKLMFPGAQRMNRGNHEVKTLVHACKSNNVTDLVIVHET 142
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R +PD L++ LP GPTA+F + +V+R D+ + G + P L+ +NF +RLG RV +
Sbjct: 143 RGQPDGLVVCHLPFGPTAYFTMYNVVMRHDVPDIGTMSEAYPHLIFHNFTSRLGRRVSNI 202
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 195
++ LFP P+ RRV+TF N D+I FRHH Y
Sbjct: 203 LKYLFPV-PKEDSRRVITFANTDDYISFRHHTY 234
Score = 94 (38.1 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 218 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 272
+KT + V L E GPRF +KL ++ GT + + + EW H P T+++R FL
Sbjct: 235 KKTDHKNV--ELTEVGPRFEMKLYMIKLGTLENESTADVEWRHHPYTRTAKKRKFL 288
>POMBASE|SPAC19A8.07c [details] [associations]
symbol:SPAC19A8.07c "U3 snoRNP-associated protein Imp4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0032040 "small-subunit processome" evidence=ISO]
InterPro:IPR004154 PomBase:SPAC19A8.07c EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0006364
InterPro:IPR007109 Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954
PROSITE:PS50833 GO:GO:0032040 eggNOG:COG2136 HOGENOM:HOG000172063
KO:K14561 OMA:SHFPHGP PIR:T37954 RefSeq:NP_593785.1 STRING:O13823
EnsemblFungi:SPAC19A8.07c.1 GeneID:2542446 KEGG:spo:SPAC19A8.07c
OrthoDB:EOG4897WM NextBio:20803502 Uniprot:O13823
Length = 289
Score = 313 (115.2 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 71/183 (38%), Positives = 102/183 (55%)
Query: 13 DETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSH 72
DE+ ++ E N DE+ + ++ PK+L+TT R S+R F E+ +IPNS+
Sbjct: 59 DESRATQEETET---NLDDEYHRLGER--EPKVLVTTSREPSSRLAQFAKEVRLLIPNSY 113
Query: 73 YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKD 132
RG + ++E A+ D T I+++H +R PD L+I LP GPT F L +VLR D
Sbjct: 114 RLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHD 173
Query: 133 IKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRH 192
I N G + P L+ N ++LG RV + +LFP P+ RVVTF N D+I FRH
Sbjct: 174 IPNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRH 233
Query: 193 HRY 195
H Y
Sbjct: 234 HIY 236
Score = 83 (34.3 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 219 KTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP 261
KT +++I L E GPRF +KL + GT D + EW KP
Sbjct: 238 KTGPKQII--LSEAGPRFEMKLFEITLGTVDMVDADVEWKLKP 278
>UNIPROTKB|Q0VD01 [details] [associations]
symbol:IMP4 "U3 small nucleolar ribonucleoprotein protein
IMP4" species:9913 "Bos taurus" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] InterPro:IPR004154
GO:GO:0005730 GO:GO:0030529 GO:GO:0006364 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EMBL:BC119909 IPI:IPI00703914 RefSeq:NP_001069085.1 UniGene:Bt.5241
ProteinModelPortal:Q0VD01 STRING:Q0VD01 PRIDE:Q0VD01
Ensembl:ENSBTAT00000004184 GeneID:513405 KEGG:bta:513405 CTD:92856
eggNOG:COG2136 GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 InParanoid:Q0VD01 KO:K14561 OMA:SHFPHGP
OrthoDB:EOG4JHCG8 NextBio:20870839 Uniprot:Q0VD01
Length = 291
Score = 298 (110.0 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 62/153 (40%), Positives = 92/153 (60%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P L++ LP GPTA+F L +V+R DI + G + P L+++ F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDI 202
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 195
++ LFP P+ RRV+TF NQ D+I FRHH Y
Sbjct: 203 LRYLFPV-PKDDSRRVITFANQDDYISFRHHVY 234
Score = 89 (36.4 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 218 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 272
+KT+ + V L E GPRF LKL ++ GT + + + EW P +T+ +R FL
Sbjct: 235 KKTNHRNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288
>UNIPROTKB|Q96G21 [details] [associations]
symbol:IMP4 "U3 small nucleolar ribonucleoprotein protein
IMP4" species:9606 "Homo sapiens" [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0006364 "rRNA processing" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004154 GO:GO:0005730 GO:GO:0030529
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AC132479 CTD:92856
eggNOG:COG2136 HOGENOM:HOG000172063 HOVERGEN:HBG056795 KO:K14561
OMA:SHFPHGP OrthoDB:EOG4JHCG8 EMBL:BC010042 IPI:IPI00181116
RefSeq:NP_219484.1 UniGene:Hs.91579 ProteinModelPortal:Q96G21
SMR:Q96G21 STRING:Q96G21 PhosphoSite:Q96G21 DMDM:73621060
PaxDb:Q96G21 PeptideAtlas:Q96G21 PRIDE:Q96G21 DNASU:92856
Ensembl:ENST00000259239 GeneID:92856 KEGG:hsa:92856 UCSC:uc002tra.1
GeneCards:GC02P131099 HGNC:HGNC:30856 MIM:612981 neXtProt:NX_Q96G21
PharmGKB:PA142671656 InParanoid:Q96G21 ChiTaRS:IMP4
GenomeRNAi:92856 NextBio:77904 ArrayExpress:Q96G21 Bgee:Q96G21
CleanEx:HS_IMP4 Genevestigator:Q96G21 GermOnline:ENSG00000136718
Uniprot:Q96G21
Length = 291
Score = 289 (106.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 61/153 (39%), Positives = 90/153 (58%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 195
++ LFP P+ RV+TF NQ D+I FRHH Y
Sbjct: 203 LRYLFPV-PKDDSHRVITFANQDDYISFRHHVY 234
Score = 93 (37.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 218 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 272
+KT + V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 235 KKTDHRNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>MGI|MGI:106572 [details] [associations]
symbol:Imp4 "IMP4, U3 small nucleolar ribonucleoprotein,
homolog (yeast)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO;ISA] [GO:0006364 "rRNA
processing" evidence=TAS] [GO:0030519 "snoRNP binding"
evidence=ISA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] InterPro:IPR004154
MGI:MGI:106572 GO:GO:0005730 GO:GO:0003723 GO:GO:0030529
GO:GO:0030519 GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 CTD:92856
eggNOG:COG2136 GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4JHCG8
EMBL:AF334609 EMBL:AK010504 EMBL:AK013334 EMBL:AK084933
EMBL:AK151176 EMBL:AK152214 EMBL:AK166903 EMBL:BC037602
EMBL:BC069930 IPI:IPI00395166 RefSeq:NP_848716.2 UniGene:Mm.289667
ProteinModelPortal:Q8VHZ7 SMR:Q8VHZ7 STRING:Q8VHZ7
PhosphoSite:Q8VHZ7 PaxDb:Q8VHZ7 PRIDE:Q8VHZ7
Ensembl:ENSMUST00000027303 GeneID:27993 KEGG:mmu:27993
UCSC:uc007aor.2 InParanoid:Q8VHZ7 NextBio:306486 Bgee:Q8VHZ7
Genevestigator:Q8VHZ7 GermOnline:ENSMUSG00000026127 Uniprot:Q8VHZ7
Length = 291
Score = 289 (106.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 61/153 (39%), Positives = 90/153 (58%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 195
++ LFP P+ RV+TF NQ D+I FRHH Y
Sbjct: 203 LRYLFPV-PKDDSHRVITFANQDDYISFRHHVY 234
Score = 93 (37.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 218 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 272
+KT + V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 235 KKTDHRNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>RGD|1308463 [details] [associations]
symbol:Imp4 "IMP4, U3 small nucleolar ribonucleoprotein, homolog
(yeast)" species:10116 "Rattus norvegicus" [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004154 RGD:1308463 GO:GO:0005730 GO:GO:0030529
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 CTD:92856 eggNOG:COG2136
GeneTree:ENSGT00550000074987 HOGENOM:HOG000172063
HOVERGEN:HBG056795 KO:K14561 EMBL:BC087066 IPI:IPI00952233
RefSeq:NP_001009700.1 UniGene:Rn.6698 ProteinModelPortal:Q5PQR5
SMR:Q5PQR5 STRING:Q5PQR5 PRIDE:Q5PQR5 Ensembl:ENSRNOT00000066913
GeneID:316317 KEGG:rno:316317 UCSC:RGD:1308463 InParanoid:Q5PQR5
NextBio:670696 ArrayExpress:Q5PQR5 Genevestigator:Q5PQR5
Uniprot:Q5PQR5
Length = 291
Score = 289 (106.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 61/153 (39%), Positives = 90/153 (58%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRY 195
++ LFP P+ RV+TF NQ D+I FRHH Y
Sbjct: 203 LRYLFPV-PKDDSHRVITFANQDDYISFRHHVY 234
Score = 93 (37.8 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 218 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 272
+KT + V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 235 KKTDHRNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>SGD|S000005019 [details] [associations]
symbol:IMP4 "Component of the SSU processome" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0032040 "small-subunit processome" evidence=IDA]
[GO:0034457 "Mpp10 complex" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;TAS] [GO:0042134 "rRNA primary transcript
binding" evidence=IPI] [GO:0043047 "single-stranded telomeric DNA
binding" evidence=IDA] [GO:0030515 "snoRNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] SGD:S000005019
InterPro:IPR004154 GO:GO:0030515 EMBL:BK006947 EMBL:X86470
GO:GO:0006364 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0042134 GO:GO:0032040
GO:GO:0043047 RefSeq:NP_014331.3 GeneID:855656 KEGG:sce:YNL068C
GO:GO:0034457 eggNOG:COG2136 GeneTree:ENSGT00550000074987
HOGENOM:HOG000172063 KO:K14561 OMA:SHFPHGP OrthoDB:EOG4897WM
EMBL:Z71351 PIR:S53904 RefSeq:NP_014324.3 ProteinModelPortal:P53941
SMR:P53941 DIP:DIP-4362N IntAct:P53941 MINT:MINT-497481
STRING:P53941 PaxDb:P53941 PeptideAtlas:P53941 EnsemblFungi:YNL075W
GeneID:855649 KEGG:sce:YNL075W CYGD:YNL075w NextBio:979893
Genevestigator:P53941 GermOnline:YNL075W Uniprot:P53941
Length = 290
Score = 291 (107.5 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 62/159 (38%), Positives = 90/159 (56%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
P+I++TT R S R F E+ + PN+ RG Y + +++ KK T ++V+H +
Sbjct: 86 PRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEH 145
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P +L I P GPTA F L +V+R DI N GN + P L+ +NF T LG RV +
Sbjct: 146 RGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCI 205
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKE 201
++ LF P+ RV+TF N+ DFI R H Y+ T+E
Sbjct: 206 LKHLFNAGPKKDSERVITFANRGDFISVRQHVYV-RTRE 243
Score = 76 (31.8 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 229 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
+ E GPRF ++L L+ GT + K + EW + + T+ ++ +L
Sbjct: 247 IAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
>CGD|CAL0000877 [details] [associations]
symbol:IMP4 species:5476 "Candida albicans" [GO:0032040
"small-subunit processome" evidence=IEA] [GO:0034457 "Mpp10
complex" evidence=IEA] [GO:0030515 "snoRNA binding" evidence=IEA]
[GO:0042134 "rRNA primary transcript binding" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
InterPro:IPR004154 CGD:CAL0000877 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833 EMBL:AACQ01000109
EMBL:AACQ01000108 eggNOG:COG2136 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_714190.1 RefSeq:XP_714230.1 STRING:Q59X74 GeneID:3644138
GeneID:3644172 KEGG:cal:CaO19.603 KEGG:cal:CaO19.8236
Uniprot:Q59X74
Length = 283
Score = 278 (102.9 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 63/173 (36%), Positives = 96/173 (55%)
Query: 31 DEFSSILKQGCA-PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAK 89
DE+S + G + PK++ITT R S + F E+ + PNS RG Y + ++
Sbjct: 68 DEYSRL--SGISDPKVVITTSRDPSVKLLQFSKEIKLMFPNSLKLNRGNYIISDLVSTCN 125
Query: 90 KKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLN 149
+ + +I++H +R P +L + P GPTA F L + LR D+ N GN + P L+
Sbjct: 126 RVQVSDMILLHEHRGVPSSLTVSHFPHGPTAIFTLHNVKLRHDLPNLGNVSESYPHLIFE 185
Query: 150 NFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKES 202
NF + LG RV +++Q LFP + RV+TF N D+I RHH Y+ +TK+S
Sbjct: 186 NFQSDLGKRVVKILQHLFPPGVKKDSSRVITFVNNDDYISVRHHVYV-KTKDS 237
Score = 75 (31.5 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 229 LQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
L E GPRF ++L ++ G D K + EW + + T+ R+ +L
Sbjct: 240 LSEIGPRFEMRLYEIRLGLPDNKDADVEWQMRRFIRTANRKNYL 283
>GENEDB_PFALCIPARUM|PF08_0055 [details] [associations]
symbol:PF08_0055 "u3 small nucleolar
ribonucleoprotein protein" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR004154 GO:GO:0003676 GO:GO:0006396 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0005732 EMBL:AL844507 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_001349337.1 ProteinModelPortal:Q8IB23 IntAct:Q8IB23
MINT:MINT-1550495 EnsemblProtists:PF08_0055:mRNA GeneID:2655255
KEGG:pfa:PF08_0055 EuPathDB:PlasmoDB:PF3D7_0818800 OMA:KRIMNIF
ProtClustDB:CLSZ2433740 Uniprot:Q8IB23
Length = 362
Score = 201 (75.8 bits), Expect = 4.9e-27, Sum P(3) = 4.9e-27
Identities = 47/144 (32%), Positives = 75/144 (52%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
P++LITT R S+ F EL +IPNS RG+Y +K I+ +A+K + T +I++H
Sbjct: 81 PRVLITTSRNPSSTLENFAKELKLIIPNSEKINRGSYFIKDILNFARKNNITDVIILHEY 140
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNH-GNPTGHIPELVLNNFATRLGHRVGR 161
+ P L+I LP GPT + +R + N + P L+ +NF + LG R+
Sbjct: 141 KGIPRNLIICHLPFGPTLFCTIKDCKMRCEFNEKIDNISLCTPHLIFHNFHSDLGKRIMN 200
Query: 162 LIQSLFPQSPEFRGRRVVTFHNQR 185
+ + LFP +R + HN +
Sbjct: 201 IFKYLFPPVTMRTNKRKMPKHNSQ 224
Score = 75 (31.5 bits), Expect = 4.9e-27, Sum P(3) = 4.9e-27
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 218 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSR 267
EK +++ L+E GPRF+ + + T D+ ++E++++P M++ +
Sbjct: 311 EKNQTNEIV--LKEIGPRFSFVVYKINKETLDSLNEDYEYIYRPFMNSRK 358
Score = 64 (27.6 bits), Expect = 4.9e-27, Sum P(3) = 4.9e-27
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 172 EFRGRRVVTFHNQRDFIFFRHHRY 195
++ RV+ F N+ D I+FRH+ +
Sbjct: 287 KYENNRVIVFFNKNDIIYFRHYNW 310
>UNIPROTKB|Q8IB23 [details] [associations]
symbol:PF08_0055 "U3 small nucleolar ribonucleoprotein
protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR004154 GO:GO:0003676 GO:GO:0006396 InterPro:IPR007109
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0005732 EMBL:AL844507 HOGENOM:HOG000172063 KO:K14561
RefSeq:XP_001349337.1 ProteinModelPortal:Q8IB23 IntAct:Q8IB23
MINT:MINT-1550495 EnsemblProtists:PF08_0055:mRNA GeneID:2655255
KEGG:pfa:PF08_0055 EuPathDB:PlasmoDB:PF3D7_0818800 OMA:KRIMNIF
ProtClustDB:CLSZ2433740 Uniprot:Q8IB23
Length = 362
Score = 201 (75.8 bits), Expect = 4.9e-27, Sum P(3) = 4.9e-27
Identities = 47/144 (32%), Positives = 75/144 (52%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
P++LITT R S+ F EL +IPNS RG+Y +K I+ +A+K + T +I++H
Sbjct: 81 PRVLITTSRNPSSTLENFAKELKLIIPNSEKINRGSYFIKDILNFARKNNITDVIILHEY 140
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNH-GNPTGHIPELVLNNFATRLGHRVGR 161
+ P L+I LP GPT + +R + N + P L+ +NF + LG R+
Sbjct: 141 KGIPRNLIICHLPFGPTLFCTIKDCKMRCEFNEKIDNISLCTPHLIFHNFHSDLGKRIMN 200
Query: 162 LIQSLFPQSPEFRGRRVVTFHNQR 185
+ + LFP +R + HN +
Sbjct: 201 IFKYLFPPVTMRTNKRKMPKHNSQ 224
Score = 75 (31.5 bits), Expect = 4.9e-27, Sum P(3) = 4.9e-27
Identities = 13/50 (26%), Positives = 30/50 (60%)
Query: 218 EKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSR 267
EK +++ L+E GPRF+ + + T D+ ++E++++P M++ +
Sbjct: 311 EKNQTNEIV--LKEIGPRFSFVVYKINKETLDSLNEDYEYIYRPFMNSRK 358
Score = 64 (27.6 bits), Expect = 4.9e-27, Sum P(3) = 4.9e-27
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 172 EFRGRRVVTFHNQRDFIFFRHHRY 195
++ RV+ F N+ D I+FRH+ +
Sbjct: 287 KYENNRVIVFFNKNDIIYFRHYNW 310
>UNIPROTKB|G4ND46 [details] [associations]
symbol:MGG_00977 "U3 small nucleolar ribonucleoprotein
IMP4" species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR004154 EMBL:CM001235 GO:GO:0003676
GO:GO:0030529 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 KO:K14561 RefSeq:XP_003717972.1
ProteinModelPortal:G4ND46 EnsemblFungi:MGG_00977T0 GeneID:2674209
KEGG:mgr:MGG_00977 Uniprot:G4ND46
Length = 295
Score = 229 (85.7 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 56/180 (31%), Positives = 91/180 (50%)
Query: 31 DEFSSILKQGCA-PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAK 89
DE++ + G P++++TT R S R AF E+ ++P + RG L +++ +
Sbjct: 72 DEYAQL--SGLVDPRVMVTTSRDPSARLAAFAKEIRLLLPTAIRLNRGNLILPELVRSVQ 129
Query: 90 KKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKN--HGNPTGHIPELV 147
+ I+++H R P AL I +P GPT F L ++LR DI G + P LV
Sbjct: 130 AAGLSDIVLLHERRGTPTALTISHMPHGPTVSFSLHNVLLRHDIPGSVRGTVSEAYPHLV 189
Query: 148 LNNFATRLGHRVGRLIQSLFPQSPEFRGR-----RVVTFHNQRDFIFFRHHRYIFETKES 202
+ F ++LG R+ ++++ LFP + RV+TF N D I RHH ++ ES
Sbjct: 190 FDGFTSKLGQRIVKVLKHLFPPREPITNKAKMSNRVITFKNIDDVIEVRHHVFVRTGHES 249
Score = 86 (35.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 219 KTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
+T + V L E GPR ++K+ ++ GT + K G+ EW TSR++ +L
Sbjct: 244 RTGHESV--ELAEVGPRMSMKVFEIRGGTLENKDGDVEWHLSQYTRTSRKKNYL 295
>ASPGD|ASPL0000059866 [details] [associations]
symbol:AN0647 species:162425 "Emericella nidulans"
[GO:0032040 "small-subunit processome" evidence=IEA] [GO:0034457
"Mpp10 complex" evidence=IEA] [GO:0030515 "snoRNA binding"
evidence=IEA] [GO:0042134 "rRNA primary transcript binding"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0004812 "aminoacyl-tRNA ligase
activity" evidence=IEA] InterPro:IPR004154 EMBL:BN001308
GO:GO:0003676 GO:GO:0030529 InterPro:IPR007109 Pfam:PF04427
SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
EnsemblFungi:CADANIAT00002029 OMA:NESAADI Uniprot:C8VS07
Length = 144
Score = 170 (64.9 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
Identities = 39/91 (42%), Positives = 52/91 (57%)
Query: 109 LLIIGLPDGPTAHFKLSKLVLRKDIKN--HGNPTGHIPELVLNNFATRLGHRVGRLIQSL 166
+ I LP GPTA F L +VLR DI N G + P L+ F T+LG RV ++++ L
Sbjct: 1 MTISHLPHGPTASFSLHNVVLRADIPNAARGTVSESYPHLIFEGFKTKLGKRVVQILKHL 60
Query: 167 FPQSPEFR-GRRVVTFHNQRDFIFFRHHRYI 196
FP + G RVVTF N+ D I RHH ++
Sbjct: 61 FPPREAGKVGNRVVTFVNKEDSIEVRHHVFV 91
Score = 73 (30.8 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 229 LQECGPRFTLKLVSLQHGTFDTKG--GEFEWVHKPEMDTSRRRFFL 272
L E GPR T++L ++ G+ + KG G+ EW TSR++ +L
Sbjct: 100 LAEVGPRMTMRLFEIRGGSLE-KGSSGDVEWALTQYTRTSRKKDYL 144
>UNIPROTKB|G4NCH9 [details] [associations]
symbol:MGG_01078 "Ribosome biogenesis protein BRX1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0000027 "ribosomal
large subunit assembly" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0008097 "5S rRNA binding" evidence=ISS]
[GO:0042134 "rRNA primary transcript binding" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR004154
GO:GO:0005730 EMBL:CM001235 GO:GO:0030687 KO:K14820
InterPro:IPR007109 InterPro:IPR026532 PANTHER:PTHR13634
Pfam:PF04427 SMART:SM00879 SUPFAM:SSF52954 PROSITE:PS50833
GO:GO:0042134 GO:GO:0000027 GO:GO:0008097 RefSeq:XP_003717860.1
EnsemblFungi:MGG_01078T0 GeneID:2675248 KEGG:mgr:MGG_01078
Uniprot:G4NCH9
Length = 313
Score = 119 (46.9 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 62/251 (24%), Positives = 111/251 (44%)
Query: 26 AGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLK--- 82
AG D ++ + ++LI + R + R +++L +++P H K +D K
Sbjct: 12 AGGDKSSEAASAPRKNKQRVLILSSRGVTFRHRHLLNDLAAMLP--HGKKDVKFDSKSKL 69
Query: 83 -KIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPT- 140
++ E A+ + +++ + + + +P+GPT F L L ++ GN
Sbjct: 70 YQLNELAELYNCNNVLFFEARKGQDLYVWASKVPNGPTVKFHLQNLHTMDELNFTGNCLK 129
Query: 141 GHIPELVLNNFATRLGHRVGRLIQSLFPQS---PEFRGR------RVVTFHNQRDFIFFR 191
G P L ++ + H R+I+ LF PE + V+ F I+ R
Sbjct: 130 GSRPVLSFDSAFDKDPHY--RVIKELFLHIFGVPEGARKSKPFVDHVMGFSIADGKIWVR 187
Query: 192 HHRYIFETKESKGSDA-NGKKAKDAKSEKTSQQK-VITRLQECGPRFTLKLVSLQHGTFD 249
+++ I E +++KG D +G+ K+ KS + K L E GPRF L V +Q G F
Sbjct: 188 NYQ-INEVEKTKGEDGEDGEAKKEKKSSRKPDAKDTDINLVEIGPRFVLTPVVIQEGAF- 245
Query: 250 TKGGEFEWVHK 260
GG + +K
Sbjct: 246 --GGPIIYENK 254
>MGI|MGI:2178445 [details] [associations]
symbol:Ppan "peter pan homolog (Drosophila)" species:10090
"Mus musculus" [GO:0001560 "regulation of cell growth by
extracellular stimulus" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] InterPro:IPR004154 MGI:MGI:2178445 GO:GO:0005730
EMBL:CH466522 InterPro:IPR007109 Pfam:PF04427 SMART:SM00879
SUPFAM:SSF52954 PROSITE:PS50833 GO:GO:0001560 KO:K14859
eggNOG:NOG272199 OrthoDB:EOG4P2Q1Q CTD:56342
GeneTree:ENSGT00530000064158 HOGENOM:HOG000210038
HOVERGEN:HBG026954 OMA:RRVMEPF EMBL:AK039027 EMBL:BC014688
IPI:IPI00130510 RefSeq:NP_663585.2 UniGene:Mm.2930
ProteinModelPortal:Q91YU8 STRING:Q91YU8 PhosphoSite:Q91YU8
PaxDb:Q91YU8 PRIDE:Q91YU8 Ensembl:ENSMUST00000004203 GeneID:235036
KEGG:mmu:235036 InParanoid:Q8BYM4 NextBio:382469 Bgee:Q91YU8
CleanEx:MM_PPAN Genevestigator:Q91YU8 GermOnline:ENSMUSG00000004100
Uniprot:Q91YU8
Length = 470
Score = 88 (36.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 29/97 (29%), Positives = 45/97 (46%)
Query: 81 LKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDI------- 133
LK + A T +++ T L ++ LP GPT F++SK L +D+
Sbjct: 70 LKDCVAVAGPLGVTHFLIL-TKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRH 128
Query: 134 KNHGNPTGHIPELVLNNFATRLGH--RVGRLIQSLFP 168
+ H H P LVLN+F + H + + Q+LFP
Sbjct: 129 RMHEQQFNHPPLLVLNSFGPQGMHIKLMATMFQNLFP 165
Score = 73 (30.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 211 KAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPE 262
+A + +QQ + RL E GPR TL+L+ +Q G + +VHK E
Sbjct: 255 QAVAGRGNMQAQQSAV-RLTEIGPRMTLQLIKIQEGVGNGNVLFHSFVHKTE 305
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.138 0.414 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 272 272 0.00099 114 3 11 22 0.47 33
32 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 36
No. of states in DFA: 595 (63 KB)
Total size of DFA: 199 KB (2112 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.99u 0.08s 25.07t Elapsed: 00:00:02
Total cpu time: 24.99u 0.08s 25.07t Elapsed: 00:00:02
Start: Sat May 11 10:10:49 2013 End: Sat May 11 10:10:51 2013