BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024088
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R631|RPF1_PONAB Ribosome production factor 1 OS=Pongo abelii GN=RPF1 PE=2 SV=1
Length = 349
Score = 267 bits (682), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 139/273 (50%), Positives = 178/273 (65%), Gaps = 26/273 (9%)
Query: 2 TPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFI 61
P+TI+N R DET P+D+E+ DEF+S + +PKILITT R
Sbjct: 101 VPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLC 160
Query: 62 SELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 161 EQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 240
FHNQRD+IFFR HRYIF +++ G +QE GPRFTLKL
Sbjct: 281 FHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTLKL 316
Query: 241 VSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 317 RSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|Q9H9Y2|RPF1_HUMAN Ribosome production factor 1 OS=Homo sapiens GN=RPF1 PE=1 SV=2
Length = 349
Score = 267 bits (682), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 139/273 (50%), Positives = 178/273 (65%), Gaps = 26/273 (9%)
Query: 2 TPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFI 61
P+TI+N R DET P+D+E+ DEF+S + +PKILITT R
Sbjct: 101 VPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLC 160
Query: 62 SELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 161 EQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 240
FHNQRD+IFFR HRYIF +++ G +QE GPRFTLKL
Sbjct: 281 FHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTLKL 316
Query: 241 VSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 317 RSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|Q7TND5|RPF1_MOUSE Ribosome production factor 1 OS=Mus musculus GN=Rpf1 PE=2 SV=2
Length = 349
Score = 265 bits (677), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 137/273 (50%), Positives = 179/273 (65%), Gaps = 26/273 (9%)
Query: 2 TPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFI 61
P+TI+N R DET P+D+E+ DEF+S + +PKILITT R
Sbjct: 101 VPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLC 160
Query: 62 SELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIP+SH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 161 EQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 240
FHNQRD+IFFR HRYIF++++ G +QE GPRFTLKL
Sbjct: 281 FHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTLKL 316
Query: 241 VSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
SLQ GTFD+K GE+EWVHKP EMDTSRR+F L
Sbjct: 317 RSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 349
>sp|Q8AVP1|RPF1_XENLA Ribosome production factor 1 OS=Xenopus laevis GN=rpf1 PE=2 SV=1
Length = 343
Score = 256 bits (654), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 133/273 (48%), Positives = 172/273 (63%), Gaps = 26/273 (9%)
Query: 2 TPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFI 61
P+TIEN R DET P D+E+ DEF+ + PKILITT R F
Sbjct: 95 VPKTIENQRVYDETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFT 154
Query: 62 SELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L S+IPNS Y R LKKII +D+T ++V++ +R+ P+ L++ LPDGPTAH
Sbjct: 155 EQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAH 214
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK++K G PT H PE++LNNF TRLGH +GR+ SL+P P F GR+V T
Sbjct: 215 FKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVAT 274
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 240
FHNQRD+IFFR+HRY+F++++ G +QE GPRFTLKL
Sbjct: 275 FHNQRDYIFFRYHRYLFKSEKKVG------------------------IQELGPRFTLKL 310
Query: 241 VSLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
SLQ GTFD+K GE+EWVHK EMDTSRR+F L
Sbjct: 311 RSLQKGTFDSKYGEYEWVHKRHEMDTSRRKFHL 343
>sp|Q6IQU6|RPF1_DANRE Ribosome production factor 1 OS=Danio rerio GN=rpf1 PE=2 SV=1
Length = 330
Score = 252 bits (643), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 132/273 (48%), Positives = 174/273 (63%), Gaps = 26/273 (9%)
Query: 2 TPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFI 61
P+TIEN R DET P+D+E+ DEFS+ + PK+LITT R F
Sbjct: 82 VPKTIENQRIYDETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFC 141
Query: 62 SELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIP+++ Y R LKK+I + FT ++V++ +R+ P+ +++ LPDGPTAH
Sbjct: 142 DQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAH 201
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK++K G NPT H PE++LNNF TRLGH +GRL +LFP P+F GR+V T
Sbjct: 202 FKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVAT 261
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 240
FHNQRDFIFFR HRYIF+ ++ G +QE GPRFTLKL
Sbjct: 262 FHNQRDFIFFRFHRYIFKNEKKVG------------------------IQELGPRFTLKL 297
Query: 241 VSLQHGTFDTKGGEFEWVHK-PEMDTSRRRFFL 272
SLQ GTFD+K GE+EWVHK EMD+SRR+F L
Sbjct: 298 RSLQKGTFDSKFGEYEWVHKRHEMDSSRRKFHL 330
>sp|Q5RJS9|RPF1_RAT Ribosome production factor 1 OS=Rattus norvegicus GN=Rpf1 PE=2 SV=2
Length = 345
Score = 250 bits (638), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 127/260 (48%), Positives = 168/260 (64%), Gaps = 25/260 (9%)
Query: 2 TPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFI 61
P+TI+N R DET P+D+E+ DEF+S + +PKILITT R
Sbjct: 101 VPKTIDNQRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLC 160
Query: 62 SELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
+L +VIP+SH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAH
Sbjct: 161 EQLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAH 220
Query: 122 FKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVT 180
FK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V T
Sbjct: 221 FKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVAT 280
Query: 181 FHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 240
FHNQRD+IFFR HRYIF++++ G +QE GPRFTLKL
Sbjct: 281 FHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTLKL 316
Query: 241 VSLQHGTFDTKGGEFEWVHK 260
SLQ GTFD+K GE+EWVHK
Sbjct: 317 RSLQKGTFDSKYGEYEWVHK 336
>sp|P54073|YUY1_CAEEL Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans
GN=F44G4.1 PE=4 SV=4
Length = 384
Score = 236 bits (603), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 127/272 (46%), Positives = 167/272 (61%), Gaps = 24/272 (8%)
Query: 2 TPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFI 61
P+TIE+ RE D T+ +DDE+ DEF+ + +PK++IT F
Sbjct: 136 VPKTIESMREYDATMVNEEDDEVEHDEANDEFAPYFNRETSPKVMITMTPKAKITTFKFC 195
Query: 62 SELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121
EL IPNS + R LK IIE AK+++FT ++VVH +R++P+ ++ LP+GPTA+
Sbjct: 196 FELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAY 255
Query: 122 FKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTF 181
FK++ L +D+K G T H PE++LNNF TRLGH + R++ LFP P+F GRRVVTF
Sbjct: 256 FKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTF 315
Query: 182 HNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLV 241
HNQRD+IFFRHHRY F+ + SK + L E GPRFTL+L
Sbjct: 316 HNQRDYIFFRHHRYEFKKEGSKAA-----------------------LLELGPRFTLRLK 352
Query: 242 SLQHGTFDTKGGEFEWVHKP-EMDTSRRRFFL 272
LQ GTFD K GEFEWV K EM+TSRRRFFL
Sbjct: 353 WLQKGTFDAKWGEFEWVLKRHEMETSRRRFFL 384
>sp|Q9VKB4|RPF1_DROME Probable ribosome production factor 1 OS=Drosophila melanogaster
GN=CG6712 PE=2 SV=1
Length = 394
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/275 (46%), Positives = 171/275 (62%), Gaps = 30/275 (10%)
Query: 5 TIENTREPDET----VCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAF 60
TIE+ RE D+T + D++EL D+FSS ++ PK+LIT + F
Sbjct: 143 TIESLREKDQTEVANLNDSDNEELQKELQLDDFSSYFERSYEPKVLITFADNPVTKTRKF 202
Query: 61 ISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTA 120
EL + PN+ R +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTA
Sbjct: 203 GLELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTA 262
Query: 121 HFKLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 179
HFKLS + L DIK +H T H PE++LNNF TRLG VGR++ +LF PEFRGRR V
Sbjct: 263 HFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAV 322
Query: 180 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 239
TFHNQRD+IFFRHHRY F TKE GK+ K L+E GPRFTLK
Sbjct: 323 TFHNQRDYIFFRHHRYEF-TKE-------GKRVK---------------LRELGPRFTLK 359
Query: 240 LVSLQHGTFDTKGGEFEWV--HKPEMDTSRRRFFL 272
L SLQ GTFD+K G++ W+ +K SRRRFFL
Sbjct: 360 LRSLQEGTFDSKTGDYAWIISNKRHAMESRRRFFL 394
>sp|O14180|YDS4_SCHPO Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC4F8.04 PE=4 SV=1
Length = 306
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/273 (42%), Positives = 165/273 (60%), Gaps = 21/273 (7%)
Query: 3 PRTIENTREPDETVCRPD-DDELFAGNDADEFSSIL-KQGCAPKILITTCRFNSNRGPAF 60
P TIE+ R DET+ D+EL A DEFS+ ++ PK+L+TT + S + F
Sbjct: 52 PATIESKRVYDETIIEDKPDEELQAELKDDEFSAYFSEERKVPKLLVTTSKRASRKCYDF 111
Query: 61 ISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT 119
SELL PN+ + KR G ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+
Sbjct: 112 ASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPS 171
Query: 120 AHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVV 179
+F LS L K+I NHG TGHIPEL++NNF+TRLG V R QSLF Q+P+ +GR+VV
Sbjct: 172 FYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVV 231
Query: 180 TFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLK 239
T H QRDF+FFR HRY F K S D G T LQE GPRFT++
Sbjct: 232 TIHCQRDFLFFRRHRYAFREK-SNMPDGIG-----------------TGLQELGPRFTMR 273
Query: 240 LVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
L +Q G +D K GE + ++ RR+F+L
Sbjct: 274 LRMVQKGVWDRKEGEVFFESNAGEESDRRKFWL 306
>sp|P38805|RPF1_YEAST Ribosome production factor 1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPF1 PE=1 SV=1
Length = 295
Score = 203 bits (516), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 160/275 (58%), Gaps = 43/275 (15%)
Query: 4 RTIENTREPDETVCRP---DDDEL--FAGNDADEFSSILKQGCAPKILITTCRFNSNRGP 58
+TIENTR DET+ + D+D+L + ++++E PKI +TT
Sbjct: 58 QTIENTRVYDETINKEVEGDEDDLMRYFNSNSNE---------PPKIFLTTNVNAKKSAY 108
Query: 59 AFISELLSVIPNSHYYKRG-TYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG 117
F + L+ ++PN + KR Y LK+I + K++FT I++++ ++++ L I LP+G
Sbjct: 109 EFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEG 168
Query: 118 PTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRR 177
PT +FKLS V K I HG PT HIPEL+LNNF TRLG VGRL QS+ PQ+P+ GR+
Sbjct: 169 PTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQ 228
Query: 178 VVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFT 237
V+T HNQRD+IFFR HRY+F+ E G LQE GP+FT
Sbjct: 229 VITLHNQRDYIFFRRHRYVFKDNERVG------------------------LQELGPQFT 264
Query: 238 LKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
LKL LQ G + E EW HKPEMD +++F+L
Sbjct: 265 LKLKRLQRGIKE----ETEWEHKPEMDKEKKKFYL 295
>sp|O62518|YHPK_CAEEL Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans
GN=ZK795.3 PE=4 SV=1
Length = 292
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 142/275 (51%), Gaps = 33/275 (12%)
Query: 5 TIENTREPDETVCRPDDDELFAGNDAD----EFSSILKQGCA--PKILITTCRFNSNRGP 58
+EN + D + R D EL G+D E S + A PKI+ITT R S+R
Sbjct: 35 ALENNTKIDYNL-RKDAIELAKGSDWGGQQYETDSEYRWAGAQDPKIVITTSRDPSSRLK 93
Query: 59 AFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 118
F E+ + PN+ RG YD+K++++ +K +D T +I+ R PD +L+ LP GP
Sbjct: 94 MFAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGP 153
Query: 119 TAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRV 178
TA F ++ +V+R DI N G + P L+ +N ++LGHR +++ LFP P+ +R+
Sbjct: 154 TAFFSMANVVMRHDIPNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFP-VPKPDSKRI 212
Query: 179 VTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 238
+TF N D+I FRHH Y K D + E L E GPRF L
Sbjct: 213 ITFSNSEDYISFRHHVY--------------KTENDGEVE----------LTEAGPRFEL 248
Query: 239 KLVSLQHGTFDT-KGGEFEWVHKPEMDTSRRRFFL 272
K ++ GT +T E EWV + +T+R+R FL
Sbjct: 249 KPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283
>sp|O13823|IMP4_SCHPO U3 small nucleolar ribonucleoprotein protein imp4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=imp4 PE=3 SV=1
Length = 289
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 113/219 (51%), Gaps = 24/219 (10%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK+L+TT R S+R F E+ +IPNS+ RG + ++E A+ D T I+++H +
Sbjct: 84 PKVLVTTSREPSSRLAQFAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEH 143
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R PD L+I LP GPT F L +VLR DI N G + P L+ N ++LG RV
Sbjct: 144 RGIPDGLVISHLPYGPTLSFSLHNVVLRHDIPNTGTMSEAYPHLIFENLTSKLGKRVKTA 203
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 222
+ +LFP P+ RVVTF N D+I FRHH Y KT
Sbjct: 204 LSALFPPDPKDTTPRVVTFANTDDYISFRHHIYA----------------------KTGP 241
Query: 223 QKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP 261
+++I L E GPRF +KL + GT D + EW KP
Sbjct: 242 KQII--LSEAGPRFEMKLFEITLGTVDMVDADVEWKLKP 278
>sp|Q0VD01|IMP4_BOVIN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus
GN=IMP4 PE=2 SV=1
Length = 291
Score = 141 bits (355), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 124/231 (53%), Gaps = 26/231 (11%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P L++ LP GPTA+F L +V+R DI + G + P L+++ F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTASEAKPHLIMHGFSSRLGKRVSDI 202
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 222
++ LFP P+ RRV+TF NQ D+I FRHH Y +KT+
Sbjct: 203 LRYLFP-VPKDDSRRVITFANQDDYISFRHHVY----------------------KKTNH 239
Query: 223 QKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 272
+ V L E GPRF LKL ++ GT + + + EW P +T+ +R FL
Sbjct: 240 RNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288
>sp|Q5PQR5|IMP4_RAT U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus
norvegicus GN=Imp4 PE=2 SV=1
Length = 291
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 26/231 (11%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 222
++ LFP P+ RV+TF NQ D+I FRHH Y +KT
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHHVY----------------------KKTDH 239
Query: 223 QKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 272
+ V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 240 RNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q8VHZ7|IMP4_MOUSE U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus
GN=Imp4 PE=2 SV=1
Length = 291
Score = 139 bits (349), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 26/231 (11%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 222
++ LFP P+ RV+TF NQ D+I FRHH Y +KT
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHHVY----------------------KKTDH 239
Query: 223 QKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 272
+ V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 240 RNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q5R947|IMP4_PONAB U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii
GN=IMP4 PE=2 SV=2
Length = 291
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 26/231 (11%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 222
++ LFP P+ RV+TF NQ D+I FRHH Y +KT
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHHVY----------------------KKTDH 239
Query: 223 QKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 272
+ V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 240 RNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q96G21|IMP4_HUMAN U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens
GN=IMP4 PE=1 SV=1
Length = 291
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/231 (35%), Positives = 122/231 (52%), Gaps = 26/231 (11%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
PK++ITT R S+R F EL V P + RG +++ ++ K T ++VVH +
Sbjct: 83 PKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEH 142
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P L++ LP GPTA+F L +V+R DI + G + P L+ + F++RLG RV +
Sbjct: 143 RGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPDLGTMSEAKPHLITHGFSSRLGKRVSDI 202
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 222
++ LFP P+ RV+TF NQ D+I FRHH Y +KT
Sbjct: 203 LRYLFP-VPKDDSHRVITFANQDDYISFRHHVY----------------------KKTDH 239
Query: 223 QKVITRLQECGPRFTLKLVSLQHGTFDTKG-GEFEWVHKPEMDTSRRRFFL 272
+ V L E GPRF LKL ++ GT + + + EW P +T+R+R FL
Sbjct: 240 RNV--ELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288
>sp|Q755T8|IMP4_ASHGO U3 small nucleolar ribonucleoprotein protein IMP4 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=IMP4 PE=3 SV=2
Length = 283
Score = 137 bits (346), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 122/242 (50%), Gaps = 26/242 (10%)
Query: 31 DEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKK 90
DE+S+ L PK+++TT R S R F E+ + P S RG Y +K +++ +K
Sbjct: 68 DEYSA-LSGIVDPKVIVTTSRDPSTRLSQFAKEVKLLFPTSVRLNRGNYIMKNLVDACQK 126
Query: 91 KDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNN 150
T ++V+H +R P AL I P GPTA F L +VLR DI N GN + P L+ +N
Sbjct: 127 SGTTDLVVLHEHRGVPTALTISHFPHGPTASFSLHNVVLRHDILNAGNQSEVHPHLIFDN 186
Query: 151 FATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGK 210
F T LG RV ++++ +FP + RV+TF N+ DFI R H Y+
Sbjct: 187 FTTPLGQRVVKILKHMFPPGVKKDSPRVITFANRGDFISVRQHVYV-------------- 232
Query: 211 KAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRF 270
K +D L E GPRF +KL L GT + K + EW + + T+ R+
Sbjct: 233 KTRDG-----------VELAEVGPRFEMKLYELTLGTLENKDADVEWQLRRFVRTANRKD 281
Query: 271 FL 272
+L
Sbjct: 282 YL 283
>sp|Q6FNN7|IMP4_CANGA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=IMP4 PE=3 SV=1
Length = 288
Score = 137 bits (345), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 130/253 (51%), Gaps = 29/253 (11%)
Query: 21 DDELFAGNDADEFSSILKQGCA-PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTY 79
D+E AG D DE+S+ G ++++TT R S+R F E+ + PN+ RG Y
Sbjct: 64 DNEDEAGVD-DEYSA--SSGIVEARVIVTTSRDPSSRLAQFAKEIKLLFPNAVRLNRGNY 120
Query: 80 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNP 139
+ ++ KK T +IV+H +R P +L + P GPTA F L +VLR DI N GN
Sbjct: 121 VMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNRGNQ 180
Query: 140 TGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFET 199
+ P L+ +NF T LG+RV ++++LFP P+ RV+TF N+ DFI R H Y+
Sbjct: 181 SEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFISVRQHVYV--- 237
Query: 200 KESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVH 259
+ KD + E GPRF ++L L+ GT + K + EW
Sbjct: 238 -----------RTKDG-----------VEMAEVGPRFEMRLFELRLGTLENKDADVEWQL 275
Query: 260 KPEMDTSRRRFFL 272
+ + T+ R+ +L
Sbjct: 276 RRFVRTANRKDYL 288
>sp|P53941|IMP4_YEAST U3 small nucleolar ribonucleoprotein protein IMP4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IMP4 PE=1
SV=1
Length = 290
Score = 131 bits (329), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 116/230 (50%), Gaps = 25/230 (10%)
Query: 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN 102
P+I++TT R S R F E+ + PN+ RG Y + +++ KK T ++V+H +
Sbjct: 86 PRIIVTTSRDPSTRLSQFAKEIKLLFPNAVRLNRGNYVMPNLVDACKKSGTTDLVVLHEH 145
Query: 103 RREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRL 162
R P +L I P GPTA F L +V+R DI N GN + P L+ +NF T LG RV +
Sbjct: 146 RGVPTSLTISHFPHGPTAQFSLHNVVMRHDIINAGNQSEVNPHLIFDNFTTALGKRVVCI 205
Query: 163 IQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQ 222
++ LF P+ RV+TF N+ DFI R H Y+ T+E
Sbjct: 206 LKHLFNAGPKKDSERVITFANRGDFISVRQHVYV-RTREG-------------------- 244
Query: 223 QKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
+ E GPRF ++L L+ GT + K + EW + + T+ ++ +L
Sbjct: 245 ----VEIAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFIRTANKKDYL 290
>sp|Q6C804|IMP4_YARLI U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=IMP4 PE=3 SV=1
Length = 283
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 130/270 (48%), Gaps = 29/270 (10%)
Query: 3 PRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFIS 62
P+ + + E +T+ DE DE+S+ + PK+++TT R S R F
Sbjct: 43 PKDVADDEELRKTIAY---DESVQDEIDDEYSA-MSGITDPKVVVTTSRDPSTRLSQFAK 98
Query: 63 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHF 122
E+ + P S RG L ++ K + +IV+H +R P A+ + P GPTA+F
Sbjct: 99 EVKLLFPTSIRLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYF 158
Query: 123 KLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFH 182
L +VLR D+ + GN + P L+ +NF T LG RV ++++ LFP + RV+TF
Sbjct: 159 SLHNVVLRHDLPDTGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFA 218
Query: 183 NQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVS 242
N+ DFI R H Y+ +T+E L E GPRF ++L
Sbjct: 219 NRGDFISVRQHVYV-KTREG------------------------VELAEVGPRFEMRLYD 253
Query: 243 LQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272
L+ GT + K + EW M T+ ++ +L
Sbjct: 254 LRLGTLENKDADVEWRMHGFMRTANKKDYL 283
>sp|Q6BYD9|IMP4_DEBHA U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=IMP4 PE=3 SV=2
Length = 284
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/242 (33%), Positives = 116/242 (47%), Gaps = 26/242 (10%)
Query: 31 DEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKK 90
DE+S+ L PK+LITT R S + F E+ + PNS RG Y + ++ ++
Sbjct: 68 DEYSA-LSGISEPKVLITTSRNPSVKLLQFSKEIKLMFPNSIKLNRGNYVITDLVATCQR 126
Query: 91 KDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNN 150
+ +I++H +R P +L I P GP+ F L + LR D+ GN + P LV N
Sbjct: 127 VQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDLPEIGNSSESYPHLVFEN 186
Query: 151 FATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGK 210
F + LG RV ++++ LFP + RV+TF N DFI RHH Y+
Sbjct: 187 FTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHHMYV-------------- 232
Query: 211 KAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTSRRRF 270
K KD L E GPRF ++L L+ G D K E EW + + T R+
Sbjct: 233 KTKDT-----------VELSEVGPRFEMRLYELRLGLLDNKDSEVEWQLRRFIRTGNRKN 281
Query: 271 FL 272
+L
Sbjct: 282 YL 283
>sp|Q54N44|PPAN_DICDI Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3
SV=1
Length = 426
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 68/223 (30%)
Query: 109 LLIIGLPDGPTAHFKLSKLVLRKDI-KNHGNPTG------HIPELVLNNFATRLGH--RV 159
+ + LP GPT FK+ + ++D+ K PT + P +VLN F H V
Sbjct: 114 MAMARLPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFTRGTPHLEMV 173
Query: 160 GRLIQSLFPQSPEF-----RGRRVVTF--HNQRDFIFFRHH-------------RYIFET 199
++QSLFP + +RVV F + + D + FRH+ + I ++
Sbjct: 174 QNMVQSLFPSINVYTLKLSTCKRVVLFNYNKETDNVEFRHYAIKVSNVGVNRSIKRIIQS 233
Query: 200 K---------------------ESKGSDAN-----------GKKAKDAKSEK------TS 221
K ES DAN KAK+ K E+ T+
Sbjct: 234 KIPDISNLGDISDYVMNGLGATESDYEDANDGQVELSSKMINSKAKNIKLERKGLDINTT 293
Query: 222 QQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMD 264
Q++ I +L+E GPR L L+ ++ + + +++ K +++
Sbjct: 294 QKRAI-KLEEIGPRMNLSLLKVEDDLYKGEVLYHQYIKKSDIE 335
>sp|Q9HGL6|BRX1_SCHPO Ribosome biogenesis protein brx1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=brx1 PE=3 SV=1
Length = 295
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 93/218 (42%), Gaps = 37/218 (16%)
Query: 44 KILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYD----LKKIIEYAKKKDFTSIIVV 99
K+L+ + R + R +++L+S++P H K D L ++ E A+ + +I
Sbjct: 44 KVLVLSSRGVTYRQRHLLNDLVSMMP--HSKKDSKLDSKDRLYQLNELAELYNCNNIFFF 101
Query: 100 HTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPT-GHIPELVLNNFATRLGHR 158
+ RRE L I P+GPT F + L ++ GN G P L + H
Sbjct: 102 ESRRREDLYLHIARAPNGPTVKFHVENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHL 161
Query: 159 --VGRLIQSLF--PQSPEFRGR----RVVTFHNQRDFIFFRHHRYIFETKESKGSDANGK 210
V L+Q F P+ R + RV T I+FR+ +E +E N
Sbjct: 162 KVVKELLQQTFGIPKGAR-RSKPFIDRVCTLTIADGKIWFRN----YEIRE------NED 210
Query: 211 KAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF 248
K+KD + L E GPRF + ++++ G+F
Sbjct: 211 KSKDPVT-----------LIEIGPRFVMTIINILEGSF 237
>sp|Q91YU8|SSF1_MOUSE Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=2
Length = 470
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 78/209 (37%), Gaps = 55/209 (26%)
Query: 109 LLIIGLPDGPTAHFKLSKLVLRKDI-------KNHGNPTGHIPELVLNNFATRLGH--RV 159
L ++ LP GPT F++SK L +D+ + H H P LVLN+F + H +
Sbjct: 97 LKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGPQGMHIKLM 156
Query: 160 GRLIQSLF----------------------PQSPEFRGR----RVVTFHNQRDFIFFRHH 193
+ Q+LF P S E R +VV R
Sbjct: 157 ATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPVGASRGMKKLLQE 216
Query: 194 RYIFETKESKGSD--ANGKKAKDAKSEKTSQ------------------QKVITRLQECG 233
++ ++ S+ A G D++ E + Q+ RL E G
Sbjct: 217 KFPNMSRLQDISELLATGVGLSDSEVEPDGEHNTTELPQAVAGRGNMQAQQSAVRLTEIG 276
Query: 234 PRFTLKLVSLQHGTFDTKGGEFEWVHKPE 262
PR TL+L+ +Q G + +VHK E
Sbjct: 277 PRMTLQLIKIQEGVGNGNVLFHSFVHKTE 305
>sp|O14206|YDD3_SCHPO Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC1B9.03c PE=1 SV=2
Length = 389
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 21/111 (18%)
Query: 109 LLIIGLPDGPTAHFKLSKLVLRKDI----KNHGNPTGHI---PELVLNNFATRLGHR--- 158
L II P GP+ HF++ + +L KD+ KN +PT P LV+N+F
Sbjct: 96 LRIIRAPRGPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPH 155
Query: 159 ---VGRLIQSLFP----QSPEFRGRRVVTFHNQRD--FIFFRHHRYIFETK 200
+ Q++FP Q + V N+RD +I RH +I TK
Sbjct: 156 EALLTTTFQNMFPPISVQHTNINSVKRVLLLNRRDDGYIDLRH--FIISTK 204
>sp|Q9V200|BRIX_PYRAB Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB02740
PE=3 SV=1
Length = 224
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 45 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR 104
+LITT + R +F +L V PNS Y RG +++++ A + + +++++ +
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYMTRGKKTIQELLMEAYDRGYERLLIINVWKG 61
Query: 105 EPDALLIIGL-PD--GPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLG 156
P + I + PD G + L + L++++ G NP LV+ A R+G
Sbjct: 62 NPLKMTFIKVHPDDWGYLGYLYLHGVKLQREMGFRGLNPIREDMPLVVTT-AKRVG 116
>sp|O74104|BRIX_PYRHO Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428
/ JCM 9974 / NBRC 100139 / OT-3) GN=PH1900 PE=3 SV=1
Length = 224
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 45 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR 104
+LITT + R +F +L VIPNS Y RG +++++ A + + +++++ +
Sbjct: 2 MLITTSHRPTRRTRSFGHDLERVIPNSLYLTRGKKTIQELLMEAYDRGYERLLIINVWKG 61
Query: 105 EPDALLIIGL-PD--GPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLG 156
P + I + P+ G + L + L++++ G NP LV+ A R+G
Sbjct: 62 NPLKMTFIKVHPEDWGYLGYLYLHGVKLQREMGFKGLNPIREDMPLVITT-AKRVG 116
>sp|Q9NQ55|SSF1_HUMAN Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1
Length = 473
Score = 34.3 bits (77), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 111 IIGLPDGPTAHFKLSKLVLRKDI-------KNHGNPTGHIPELVLNNFATRLGH--RVGR 161
++ LP GPT F++ K L +D+ + H H P LVLN+F H +
Sbjct: 99 LMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGPHGMHVKLMAT 158
Query: 162 LIQSLFP 168
+ Q+LFP
Sbjct: 159 MFQNLFP 165
>sp|Q5REM3|SSF1_PONAB Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1
Length = 473
Score = 34.3 bits (77), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 77/207 (37%), Gaps = 55/207 (26%)
Query: 111 IIGLPDGPTAHFKLSKLVLRKDI-------KNHGNPTGHIPELVLNNFATRLGH--RVGR 161
++ LP GPT F++ K L +D+ + H + P LVLN+F H +
Sbjct: 99 LMHLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAYPPLLVLNSFGPHGMHVKLMAT 158
Query: 162 LIQSLFP-------QSPEFRGRRVVTFHNQRDFIFFRHHRY-IFETKESKGSD------- 206
+ Q+LFP + ++ +++ + FRH+ + S+G
Sbjct: 159 MFQNLFPSINVHKVNLNTIKRCLLIDYNHDSQELDFRHYSIKVVPVGASRGMKKLLQEKF 218
Query: 207 -------------ANGKKAKDAKSE------------------KTSQQKVITRLQECGPR 235
A G ++++E Q+ RL E GPR
Sbjct: 219 PNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQSAVRLTEIGPR 278
Query: 236 FTLKLVSLQHGTFDTKGGEFEWVHKPE 262
TL+L+ +Q G + K +V K E
Sbjct: 279 MTLQLIKVQEGVGEGKVMFHSFVRKTE 305
>sp|Q9YC08|BRIX_AERPE Probable brix domain-containing ribosomal biogenesis protein
OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 /
JCM 9820 / NBRC 100138 / K1) GN=APE_1443.1 PE=1 SV=2
Length = 180
Score = 34.3 bits (77), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 47 ITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREP 106
+TT R S R +F+ +L + IP + + RG Y ++++ A + I+VV R P
Sbjct: 1 MTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGERRGNP 60
Query: 107 DALLIIGLPDGP 118
+ + + +GP
Sbjct: 61 GIIRVYAV-EGP 71
>sp|Q6GFP0|SPLE_STAAR Serine protease SplE OS=Staphylococcus aureus (strain MRSA252)
GN=splE PE=3 SV=1
Length = 238
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 69 PNSHYYKRGTYDLKKIIEYAKK--------------------KDFTSIIVVHTNRREPDA 108
PN Y G Y +KKI+ YA K KD+T I+ + + +E +
Sbjct: 90 PNGEYNNGGFYKVKKIVRYAGKEDIAILHVEDKAVHPKNRNFKDYTGILKIASEAKENER 149
Query: 109 LLIIGLPD 116
+ I+G P+
Sbjct: 150 ISIVGYPE 157
>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF2 PE=1 SV=1
Length = 453
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 217 SEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 260
S+ T ++K I +L E GPR TLKLV ++ G K E+V K
Sbjct: 317 SQPTPRKKAI-KLTELGPRLTLKLVKIEDGICSGKVLHHEFVQK 359
>sp|A9BJY3|MUTS_PETMO DNA mismatch repair protein MutS OS=Petrotoga mobilis (strain DSM
10674 / SJ95) GN=mutS PE=3 SV=1
Length = 817
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 92 DFTSIIVVHTNRREP--DALLIIGLPDGPTAHF----KLSKLVLRKDIKNHGNPTGHIPE 145
D T +I + +E D++L+ L D F K+S+++ K +GNP IP
Sbjct: 3 DLTPMIKQYLKIKEEYKDSILLFRLGDFYETFFEDAKKVSEILQIVLTKRNGNPMAGIPY 62
Query: 146 LVLNNFATRL---GHRVGRLIQSLFPQSPEFRGRRVVT 180
LNN+ RL G++V Q PQS + R VT
Sbjct: 63 HALNNYLKRLLDAGYKVAICEQMEDPQSSKGIVDRKVT 100
>sp|P38789|SSF1_YEAST Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SSF1 PE=1 SV=1
Length = 453
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 220 TSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHK 260
T ++K I +L E GPR TLKLV ++ G K E+V K
Sbjct: 320 TPRKKAI-KLTELGPRLTLKLVKIEEGICSGKVLHHEFVQK 359
>sp|Q9FD07|SPLE_STAAU Serine protease SplE OS=Staphylococcus aureus GN=splE PE=3 SV=1
Length = 238
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 69 PNSHYYKRGTYDLKKIIEYAKK--------------------KDFTSIIVVHTNRREPDA 108
PN Y G Y +KKI+ YA + KD+T I+ + + +E +
Sbjct: 90 PNGEYNNGGFYKVKKIVRYAGQEDIAILHVEDKAIHPKNRNFKDYTGILKIASEAKENER 149
Query: 109 LLIIGLPD 116
+ I+G P+
Sbjct: 150 ISIVGYPE 157
>sp|P16272|DNLI_VACCW DNA ligase OS=Vaccinia virus (strain Western Reserve) GN=LIG PE=1
SV=1
Length = 552
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 13 DETVCRPDDDELFAGNDADEF----SSILKQGCAPKIL-----ITTCR------------ 51
+ T RP D + D D F SS+ K+ K+L + TC
Sbjct: 94 ENTEIRPRDKSILTLEDVDSFLTTLSSVTKESHQIKLLTDIASVCTCNDLKCVVMLIDKD 153
Query: 52 FNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIV 98
GP ++ L ++ PN++ R + +LK+IIE A K++ SI +
Sbjct: 154 LKIKAGPRYV--LNAISPNAYDVFRKSNNLKEIIENASKQNLDSISI 198
>sp|Q5JDM5|BRIX_PYRKO Probable brix domain-containing ribosomal biogenesis protein
OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=TK0617 PE=3 SV=1
Length = 208
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 45 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRR 104
+LITT + R +F +L V PNS Y RG ++ ++ A + + +++++ +
Sbjct: 2 MLITTSHRPTRRTRSFGHDLEKVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKG 61
Query: 105 EPDALLIIGL-PD--GPTAHFKLSKLVLRKDI 133
P + I + P+ G + L + L+++I
Sbjct: 62 NPLKMTFIKVDPEDWGYIGYLYLHGIKLQREI 93
>sp|Q9ASU7|PPAN_ARATH Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1
Length = 345
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 197 FETKESKGSDANGKK-------AKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHG 246
F TK GS++ G + + D K +LQE GPR T++LV ++ G
Sbjct: 236 FVTKAGYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEG 292
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,460,955
Number of Sequences: 539616
Number of extensions: 4449745
Number of successful extensions: 10597
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 10503
Number of HSP's gapped (non-prelim): 69
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)