Query 024088
Match_columns 272
No_of_seqs 164 out of 723
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024088.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024088hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2780 Ribosome biogenesis pr 100.0 1.8E-74 3.9E-79 507.2 20.7 248 1-272 55-302 (302)
2 KOG2781 U3 small nucleolar rib 100.0 4.5E-57 9.7E-62 392.9 21.1 219 27-272 69-287 (290)
3 KOG2963 RNA-binding protein re 100.0 1.8E-49 3.8E-54 359.9 17.0 220 41-265 24-321 (405)
4 KOG2971 RNA-binding protein re 100.0 6.2E-42 1.3E-46 299.3 13.4 188 41-255 48-246 (299)
5 PF04427 Brix: Brix domain; I 100.0 7.2E-41 1.6E-45 288.7 8.4 179 47-243 1-191 (191)
6 smart00879 Brix Brix domain. T 100.0 3.7E-37 8.1E-42 262.1 19.2 170 46-238 1-180 (180)
7 COG5154 BRX1 RNA-binding prote 100.0 1.3E-37 2.8E-42 266.1 13.9 194 41-255 29-232 (283)
8 COG2136 IMP4 Predicted exosome 100.0 3.1E-33 6.7E-38 240.9 17.4 181 43-248 2-189 (191)
9 PRK03972 ribosomal biogenesis 99.9 2.7E-26 5.8E-31 199.1 20.3 125 45-169 2-132 (208)
10 PRK00933 ribosomal biogenesis 99.3 1.1E-10 2.4E-15 98.9 13.1 114 45-167 1-114 (165)
11 KOG3031 Protein required for b 99.0 4.9E-09 1.1E-13 94.2 10.3 174 52-245 37-228 (307)
12 COG5106 RPF2 Uncharacterized c 97.3 0.00041 9E-09 61.7 5.2 183 56-261 41-248 (316)
13 PRK03972 ribosomal biogenesis 94.2 0.3 6.6E-06 43.0 8.6 76 45-125 107-188 (208)
14 PF05508 Ran-binding: RanGTP-b 65.7 3.5 7.6E-05 38.3 1.6 40 230-269 187-228 (302)
15 cd00860 ThrRS_anticodon ThrRS 59.0 35 0.00077 24.6 5.8 77 44-121 3-80 (91)
16 cd00861 ProRS_anticodon_short 54.8 37 0.0008 24.8 5.3 67 56-123 19-85 (94)
17 PF04921 XAP5: XAP5, circadian 51.8 24 0.00052 31.8 4.4 78 32-126 102-186 (239)
18 cd00858 GlyRS_anticodon GlyRS 45.4 96 0.0021 24.2 6.6 79 42-122 26-107 (121)
19 PF03129 HGTP_anticodon: Antic 44.3 49 0.0011 24.3 4.5 82 45-126 2-86 (94)
20 cd00859 HisRS_anticodon HisRS 42.4 79 0.0017 22.2 5.4 78 43-121 2-80 (91)
21 cd02974 AhpF_NTD_N Alkyl hydro 38.6 1.6E+02 0.0034 22.4 6.6 71 34-117 11-83 (94)
22 COG1783 XtmB Phage terminase l 34.9 1.5E+02 0.0032 28.8 7.1 80 42-126 23-112 (414)
23 KOG3112 Uncharacterized conser 31.8 42 0.00091 29.9 2.6 42 80-123 101-142 (262)
24 cd08599 PI-PLCc_plant Catalyti 31.2 83 0.0018 28.2 4.5 86 78-169 29-117 (228)
25 COG0124 HisS Histidyl-tRNA syn 30.0 1.8E+02 0.004 28.5 7.0 77 40-117 333-410 (429)
26 cd08592 PI-PLCc_gamma Catalyti 29.3 1.4E+02 0.003 26.8 5.6 87 77-169 28-117 (229)
27 PF12745 HGTP_anticodon2: Anti 28.9 3.5E+02 0.0077 24.7 8.4 78 41-118 4-89 (273)
28 TIGR03143 AhpF_homolog putativ 27.5 1.6E+02 0.0035 29.4 6.5 85 32-120 356-446 (555)
29 COG1210 GalU UDP-glucose pyrop 27.2 84 0.0018 29.1 3.9 40 66-105 17-62 (291)
30 KOG3031 Protein required for b 26.4 99 0.0021 28.7 4.2 45 88-132 172-231 (307)
31 PF15210 SFTA2: Surfactant-ass 25.5 41 0.00089 23.3 1.2 9 233-241 2-10 (59)
32 PF10673 DUF2487: Protein of u 23.7 1.2E+02 0.0026 25.2 3.9 38 67-104 54-96 (142)
33 cd08597 PI-PLCc_PRIP_metazoa C 22.7 2.4E+02 0.0052 25.8 6.0 87 77-169 28-117 (260)
34 COG5475 Uncharacterized small 21.1 58 0.0013 22.8 1.3 13 227-239 11-23 (60)
35 cd08558 PI-PLCc_eukaryota Cata 21.0 2.1E+02 0.0046 25.6 5.2 88 77-169 28-117 (226)
36 cd08595 PI-PLCc_zeta Catalytic 20.9 1.3E+02 0.0029 27.4 3.9 88 77-169 28-117 (257)
37 cd08598 PI-PLC1c_yeast Catalyt 20.1 1.6E+02 0.0035 26.4 4.2 88 77-169 28-117 (231)
No 1
>KOG2780 consensus Ribosome biogenesis protein RPF1, contains IMP4 domain [RNA processing and modification]
Probab=100.00 E-value=1.8e-74 Score=507.19 Aligned_cols=248 Identities=60% Similarity=0.973 Sum_probs=241.4
Q ss_pred CCccccccccCCCccccCCCChhhhcCCCcchhhhhhcCCCCCeEEEEcCCCCCCcHHHHHHHHhhcCCCceecccCCcc
Q 024088 1 MTPRTIENTREPDETVCRPDDDELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYD 80 (272)
Q Consensus 1 ~~p~t~~~~r~~~~t~~~~~~~~~~~~~~~de~~~~~~~~~~pkiLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~ 80 (272)
++|+|||++|++|+|+|.++||||++|+++|||+.||+.+..||+|||++.+|+.++..||.+|+.++|||....|++..
T Consensus 55 ~vp~TIe~~R~yDeT~v~~~deEl~~d~~~deF~~~~~~~~spKvlITt~~~~~~~t~~~~~eL~~iiPNs~~~~R~~~~ 134 (302)
T KOG2780|consen 55 NVPKTIESTRVYDETIVEEEDEELQADLADDEFSPYFRREFSPKVLITTSKNPKRTTYKFASELLDIIPNSTVKKRDNYT 134 (302)
T ss_pred CCcchhhhhhhccccccCCCcHHHhhhhhhhhhHHHHhcccCccEEEEcCCCCcccHHHHHHHHHHhCCCceEEecCCch
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEEEEEcceeehhhhccCCCCCCCCcEEEccCCCCchhhHHH
Q 024088 81 LKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVG 160 (272)
Q Consensus 81 lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~F~I~n~~l~~di~~~~~~~~~~P~LilnnF~t~~g~~i~ 160 (272)
++.++++|...++|+++|++++++.|..|.|+|+|+|||++|++++|.+.+||..+|++++|.|+||+|||+|++|+.|+
T Consensus 135 vk~i~~~a~~~eftdlvvV~edRkk~n~L~iihlP~GPT~~Fkls~~~~~kdi~k~g~~t~h~PElIlNNFtTrlG~~v~ 214 (302)
T KOG2780|consen 135 VKSIVEIAIKREFTDLVVVNEDRKKPNGLKIIHLPNGPTAYFKLSNVVLTKDIKKHGRPTSHIPELILNNFTTRLGMTVG 214 (302)
T ss_pred HHHHHHHHHHhcCCceEEEecCcCCccceEEEecCCCCceEEEeecccchhhhhhcCCcccccchhhhhcccchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCCeEEEEEecCCeEEEEeeeeEEeeccCCCCCCCCCcccchhhhhccccccceeeeeecceeEEEE
Q 024088 161 RLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 240 (272)
Q Consensus 161 ~~l~~lFp~~p~~~~rRVv~f~~~~d~I~fRhY~y~i~~~~~~~~~~~~~~~~d~~~~~~~~~~i~v~L~EIGPR~tL~L 240 (272)
+||++|||.+|++.+||||+||+|+|+||||||||.|..++.+ +.|+|+||||||+|
T Consensus 215 r~f~sLfp~~p~f~gRrvvtFhnQrD~IfFRhhRY~Fkee~~k-----------------------vglqElGPrfTLrL 271 (302)
T KOG2780|consen 215 RLFASLFPHDPQFTGRRVVTFHNQRDYIFFRHHRYEFKEEEIK-----------------------VGLQELGPRFTLRL 271 (302)
T ss_pred HHHHHhCCCCccccceeEEEEEecCceEEEEEEEEeecccccc-----------------------cchhhcCCceeeee
Confidence 9999999999999999999999999999999999999865543 59999999999999
Q ss_pred EEEecCcCCCCcceEEEEeCCCCCcccccccC
Q 024088 241 VSLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 272 (272)
Q Consensus 241 ~kI~~G~f~g~~~~~~~v~k~~~~~~r~~~~l 272 (272)
.++++|+|+.+.|+++|+.+. |+++|++|||
T Consensus 272 ~~lq~G~fd~K~ge~~~~~~~-~~tsrr~f~L 302 (302)
T KOG2780|consen 272 RRLQKGTFDEKEGEFEWVHKK-METSRRKFFL 302 (302)
T ss_pred hhhhhccccccceeeeeeecc-cccchhcccC
Confidence 999999999999999999999 9999999998
No 2
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=100.00 E-value=4.5e-57 Score=392.92 Aligned_cols=219 Identities=41% Similarity=0.714 Sum_probs=204.3
Q ss_pred CCCcchhhhhhcCCCCCeEEEEcCCCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCC
Q 024088 27 GNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREP 106 (272)
Q Consensus 27 ~~~~de~~~~~~~~~~pkiLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p 106 (272)
-.-+|||+. .|...|||+|||||+||+++.+|+|+|+.+|||++..+||+..+.++++.|..+|+|++||++|++|.|
T Consensus 69 ~~vddEy~~--ag~~dPKimvTTSR~PSsrL~~FaKelkLvfPNaqr~nRG~~~~~~lv~a~ra~~~Td~iivHEhRG~P 146 (290)
T KOG2781|consen 69 SHVDDEYRW--AGEEDPKIMVTTSRDPSSRLKMFAKELKLVFPNAQRLNRGNYVVGELVDAARANGVTDLIIVHEHRGIP 146 (290)
T ss_pred ccccHHHHh--ccCCCCcEEEEeCCCchHHHHHHHHhheEeccChhhhcccceeHHHHHHHHHHCCCceEEEEeccCCCC
Confidence 356788883 799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCceEEEEEcceeehhhhccCCCCCCCCcEEEccCCCCchhhHHHHHHHhhCCCCCCCCCCeEEEEEecCC
Q 024088 107 DALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRD 186 (272)
Q Consensus 107 ~~L~I~~lP~GPT~~F~I~n~~l~~di~~~~~~~~~~P~LilnnF~t~~g~~i~~~l~~lFp~~p~~~~rRVv~f~~~~d 186 (272)
++|.|||+|.|||++|.|.|+.+++||+..|+++..+|+||||||++.+|++++.+|..|||. |+..++|||+|.|++|
T Consensus 147 dgL~vshlPfGPTa~Fsl~nvVmRhdip~~G~msE~~phlIfdNf~t~lG~Rv~~iLkhLFP~-pk~ds~Rvvtf~N~~D 225 (290)
T KOG2781|consen 147 DGLVVSHLPFGPTAFFSLHNVVMRHDIPDIGTMSEQKPHLIFDNFTTKLGKRVKTILKHLFPV-PKDDSKRVVTFANRND 225 (290)
T ss_pred CceEEEecCCCCceEeeeeeeeecccccccccccccCceEEeccccchHHHHHHHHHHHhCCC-CcCCcccEEEEecCCc
Confidence 999999999999999999999999999999999899999999999999999999999999995 8888999999999999
Q ss_pred eEEEEeeeeEEeeccCCCCCCCCCcccchhhhhccccccceeeeeecceeEEEEEEEecCcCCCCcceEEEEeCCCCCcc
Q 024088 187 FIFFRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDTS 266 (272)
Q Consensus 187 ~I~fRhY~y~i~~~~~~~~~~~~~~~~d~~~~~~~~~~i~v~L~EIGPR~tL~L~kI~~G~f~g~~~~~~~v~k~~~~~~ 266 (272)
+|.||||.|.-. +.+ . +.|.|+||||.|+|+.|..|+++...++.||++||+|+|+
T Consensus 226 yIsFRhhvy~~~--~~k--------------------~--vel~evGPRfelklyeIrlGTlE~~~ad~EW~~rpY~nTa 281 (290)
T KOG2781|consen 226 YISFRHHVYKKT--DGK--------------------E--VELTEVGPRFELKLYEIRLGTLEIKDADVEWVLRPYMNTA 281 (290)
T ss_pred eEEEEEEEEecC--CCc--------------------e--EEEeeccccceeeeeeeeecceeccccceeEEecchhcch
Confidence 999999965432 211 1 5899999999999999999999988899999999999999
Q ss_pred cccccC
Q 024088 267 RRRFFL 272 (272)
Q Consensus 267 r~~~~l 272 (272)
||+-+|
T Consensus 282 ~kR~~l 287 (290)
T KOG2781|consen 282 RKRDFL 287 (290)
T ss_pred hhhhhh
Confidence 998654
No 3
>KOG2963 consensus RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-49 Score=359.86 Aligned_cols=220 Identities=24% Similarity=0.317 Sum_probs=187.5
Q ss_pred CCCeEEEEcCCCCCCcHHHHHHHHhhcC-CCce--ecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCC
Q 024088 41 CAPKILITTCRFNSNRGPAFISELLSVI-PNSH--YYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG 117 (272)
Q Consensus 41 ~~pkiLIttSr~ps~~~r~f~kdL~~l~-Pns~--~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~G 117 (272)
+.|.++|.+++-....+++|..|||++| ||+. +..|++|+|||++.+|+.+|+|||++|+.+.. ..+|+|+++|.|
T Consensus 24 ~~ph~~v~~rgla~~~~~~L~~DlR~iMeP~TA~~LkerK~N~iKDfv~~~gplGVTH~l~lskt~~-nlslki~R~PqG 102 (405)
T KOG2963|consen 24 KSPHIRVGHRGLAGRSLKQLTLDLRRIMEPHTASNLKERKRNKLKDFVVMSGPLGVTHLLMLSKTET-NLSLKIARTPQG 102 (405)
T ss_pred cCceEEEEecccccccHHHHHHHHHHhhCcchhhHHHHHhhhhhhhHHhhcccccceEEEEEecccC-ceeEEEEecCCC
Confidence 5799999999999999999999999999 9985 56889999999999999999999999999987 479999999999
Q ss_pred ceEEEEEcceeehhhhccCCC-------CCCCCcEEEccCCCCc---hhhHHHHHHHhhCCC-CCC----CCCCeEEEEE
Q 024088 118 PTAHFKLSKLVLRKDIKNHGN-------PTGHIPELVLNNFATR---LGHRVGRLIQSLFPQ-SPE----FRGRRVVTFH 182 (272)
Q Consensus 118 PT~~F~I~n~~l~~di~~~~~-------~~~~~P~LilnnF~t~---~g~~i~~~l~~lFp~-~p~----~~~rRVv~f~ 182 (272)
||++|+|..|+|.+|+....+ .+.++|+||||||++. +.++++.|||+|||+ |+. .+++||++++
T Consensus 103 PTLtFkV~qYsLardV~~~qkrp~~~~~~Fk~pPLlVmNgFg~~~~~HlkL~~t~FQNmFPsInv~tvnlntikRcllin 182 (405)
T KOG2963|consen 103 PTLTFKVHQYSLARDVVSLQKRPKSPNDLFKSPPLLVLNGFGTSGRKHLKLMTTMFQNMFPSINVATVNLNTIKRCLLIN 182 (405)
T ss_pred CceEEEeeehhhHHHHHHHHhCCCCchhhccCCCEEEEccCCCCcchhHHHHHHHHHHcCCCcCcceeeccceeEEEEEe
Confidence 999999999999999987532 2689999999999964 567999999999999 776 4899999999
Q ss_pred e--cCCeEEEEeeeeEEeeccCCCCC---------------CCCCcccc------------hhhh---------------
Q 024088 183 N--QRDFIFFRHHRYIFETKESKGSD---------------ANGKKAKD------------AKSE--------------- 218 (272)
Q Consensus 183 ~--~~d~I~fRhY~y~i~~~~~~~~~---------------~~~~~~~d------------~~~~--------------- 218 (272)
| +++.|.|||| .|+..+++.+. ||++++.| +|+|
T Consensus 183 yn~dt~eIdmRHy--sI~vvpVGisR~vkkl~k~~~~~~~iPnL~~~~DISd~vl~~g~~~seSE~e~d~~~~i~~~~~~ 260 (405)
T KOG2963|consen 183 YNRDTGEIDMRHY--SIRVVPVGISRNVKKLVKAKKNLSTIPNLHRLQDISDLVLKGGLYASESEIEDDATVRIVDNQDV 260 (405)
T ss_pred cCCCCCeeeeeee--EEEEEecccchHHHHHHhhhcccCCCCCchhhhhHHHHhcCCcccccccccccccceEEeccccc
Confidence 8 4889999999 66665555311 45543332 1111
Q ss_pred ----------------hccccccceeeeeecceeEEEEEEEecCcCCCCcceEEEEeCCCCCc
Q 024088 219 ----------------KTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKPEMDT 265 (272)
Q Consensus 219 ----------------~~~~~~i~v~L~EIGPR~tL~L~kI~~G~f~g~~~~~~~v~k~~~~~ 265 (272)
..++++ |+|+||||||||+|+||++|.|+|+|+||+||.||..|.
T Consensus 261 ~~eveL~q~~~s~g~~~~qksa--ikL~EIGPRlTlqLvKIeEGi~~GkVlyH~hv~Kt~eEi 321 (405)
T KOG2963|consen 261 KEEVELPQPKASRGNQPPQKSA--IKLTEIGPRLTLQLVKIEEGICEGKVLYHEHVQKTEEEI 321 (405)
T ss_pred hhhhhccccccccCCCcccccc--eeeEeecccceEEEEEeeccccccceEEeehhcCCHHHH
Confidence 134566 499999999999999999999999999999999998664
No 4
>KOG2971 consensus RNA-binding protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-42 Score=299.33 Aligned_cols=188 Identities=23% Similarity=0.342 Sum_probs=170.2
Q ss_pred CCCeEEEEcCCCCCCcHHHHHHHHhhcCCCceeccc--CCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCc
Q 024088 41 CAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKR--GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 118 (272)
Q Consensus 41 ~~pkiLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R--~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GP 118 (272)
++.|+||++||+.|-++|+||+||..++||++...+ .+.++..|.++|...+|+.+++|..++....|||+++.|+||
T Consensus 48 NK~rvlv~ssRgis~R~RhLm~di~~Llph~k~dsk~d~~k~l~~lnel~elkncn~~lfFesrkr~DlYlWm~~~p~Gp 127 (299)
T KOG2971|consen 48 NKERVLVLSSRGISFRTRHLMKDISSLLPHSKKDSKLDRKKKLGVLNELAELKNCNSCLFFESRKRKDLYLWMSNSPNGP 127 (299)
T ss_pred cceeEEEEecCCchHHHHHHHHHHHHhcccccccchhhhcchHHHHHHHHHHhcCCeEEEEEeeccCceeEEEecCCCCC
Confidence 589999999999999999999999999999987655 477899999999999999999999988888899999999999
Q ss_pred eEEEEEcceeehhhhccCCCCC-CCCcEEEcc-CCCC-chhhHHHHHHHhhCCCCCC------CCCCeEEEEEecCCeEE
Q 024088 119 TAHFKLSKLVLRKDIKNHGNPT-GHIPELVLN-NFAT-RLGHRVGRLIQSLFPQSPE------FRGRRVVTFHNQRDFIF 189 (272)
Q Consensus 119 T~~F~I~n~~l~~di~~~~~~~-~~~P~Liln-nF~t-~~g~~i~~~l~~lFp~~p~------~~~rRVv~f~~~~d~I~ 189 (272)
|+.|.|+|+++|+|++.+|||. +++|+|.|+ +|++ ++.++++++|.+.|+. |. ...++|++|++.+|.||
T Consensus 128 SvkFlv~n~hTM~ElkmtgN~lkgsrplLsFd~~Fd~~pHlkl~Kell~q~fgi-P~~hrkSkpf~Dhvf~Fsi~D~~IW 206 (299)
T KOG2971|consen 128 SVKFLVHNVHTMAELKMTGNCLKGSRPLLSFDKAFDELPHLKLLKELLEQIFGI-PKHHRKSKPFVDHVFTFSILDGKIW 206 (299)
T ss_pred ceEEehhhhhhHHHhCCccccccCCcceeecccccccchHHHHHHHHHHHHcCC-CCCCcccCCccceEEEEEEecCeEE
Confidence 9999999999999999999996 689999997 7986 7889999999999965 22 36799999999999999
Q ss_pred EEeeeeEEeeccCCCCCCCCCcccchhhhhccccccceeeeeecceeEEEEEEEecCcCCCCcceE
Q 024088 190 FRHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEF 255 (272)
Q Consensus 190 fRhY~y~i~~~~~~~~~~~~~~~~d~~~~~~~~~~i~v~L~EIGPR~tL~L~kI~~G~f~g~~~~~ 255 (272)
||+| +|+..+. ++|+||||||+|.+++|.+|+|+|.++|-
T Consensus 207 fRny--qI~~~ed------------------------~~L~EiGPRfvl~~ikif~gsFgG~~lYe 246 (299)
T KOG2971|consen 207 FRNY--QISEEED------------------------KTLIEIGPRFVLNVIKIFEGSFGGPTLYE 246 (299)
T ss_pred EEEe--EeccccC------------------------cceeeeccHHHHhHHHHHhccCCCceeec
Confidence 9999 7863222 38999999999999999999999998863
No 5
>PF04427 Brix: Brix domain; InterPro: IPR007109 The Brix domain is found in a number of eukaryotic proteins including some from Saccharomyces cerevisiae and Homo sapiens, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins. There are six (one archaean and five eukaryotic) protein families which have a similar domain architecture with a central globular Brix domain. They have an optional N- and obligatory C-terminal segments, which both have charged low-complexity regions []. Proteins from the Imp4/Brix superfamily appear to be involved in ribosomal RNA processing, which essential for the functioning of all cells. The N- and C-terminal halves of a member of the superfamily, Mil, show significant structural similarity to one another. This suggests an origin by means of an ancestral duplication. Both halves have the same fold as the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases, with greater conservation seen in the N-terminal half. Structural evidence suggests that the Imp4/Brix superfamily proteins could bind single-stranded segments of RNA along a concave surface formed by the N-terminal half of their beta-sheet and a central alpha-helix [].; PDB: 2CXH_A.
Probab=100.00 E-value=7.2e-41 Score=288.65 Aligned_cols=179 Identities=40% Similarity=0.606 Sum_probs=80.3
Q ss_pred EEcCCCCCCcHHHHHHHHhhcC-CCceecccCCc-cHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEEEEE
Q 024088 47 ITTCRFNSNRGPAFISELLSVI-PNSHYYKRGTY-DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL 124 (272)
Q Consensus 47 IttSr~ps~~~r~f~kdL~~l~-Pns~~~~R~k~-~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~F~I 124 (272)
||||+++|+++++|++||+.++ ||+.+.+|++. .++|++++|..++|+++++|++++++|.+|||+++|+|||++|+|
T Consensus 1 i~ts~~~s~~~~~l~~DL~~l~~p~s~~~~r~~~~~l~~~~~~~~~~~~~~l~~~~~~~k~p~~L~i~r~~~gptl~f~I 80 (191)
T PF04427_consen 1 ITTSRKPSKRLRQLMKDLRSLFPPNSKKLNRKKKNSLKDLLEFAKQKNCTSLFVFGEHKKNPNNLWIGRLPNGPTLEFSI 80 (191)
T ss_dssp -EESSS--HHHHHHHHHHHTTS-TTEEE---TT---HHHHHHHHHHTTEEEEEEEEEETTEEEEEEEEE-SS--EEEEEE
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCCeEEEeCCCCCchHHHHHHHHHCCCCEEEEEEEeCCCcceEEEEecCCCCCEEEEE
Confidence 7899999999999999999999 99999999877 999999999999999999999999989999999999999999999
Q ss_pred cceeehhhhccCCC-CCCCCcEEEccCCCCch---hhHHHHHHHhhCCC-CC----CCCCCeEEEEEecCCe-EEEEeee
Q 024088 125 SKLVLRKDIKNHGN-PTGHIPELVLNNFATRL---GHRVGRLIQSLFPQ-SP----EFRGRRVVTFHNQRDF-IFFRHHR 194 (272)
Q Consensus 125 ~n~~l~~di~~~~~-~~~~~P~LilnnF~t~~---g~~i~~~l~~lFp~-~p----~~~~rRVv~f~~~~d~-I~fRhY~ 194 (272)
.+|.+++|+++... ..+++|+|||+||..+. +.+++++|++|||. ++ ...+|||++|++++|. ||||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~P~lif~g~~~~~~~~~~~ik~~l~~lF~~~~~~~~~~~~~~rvi~f~~~~d~~I~fR~Y- 159 (191)
T PF04427_consen 81 ENYKLMKDIKSSSKRPKGSRPLLIFNGFFFELDPELKLIKELLQDLFPGPNVDSIPLPGIDRVISFSNQRDFVIFFRHY- 159 (191)
T ss_dssp EEEE-HHHHT-------S---EEEEE------------------------------------------------------
T ss_pred EeEEEhhHhcccccCCCCCCeEEEEEecccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 99999999986544 34788999999998765 89999999999998 22 2478999999999888 999999
Q ss_pred eEEeeccCCCCCCCCCcccchhhhhccccccceeeeeecceeEEEEEEE
Q 024088 195 YIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 243 (272)
Q Consensus 195 y~i~~~~~~~~~~~~~~~~d~~~~~~~~~~i~v~L~EIGPR~tL~L~kI 243 (272)
. ........ .+....++|+||||||+|+|+||
T Consensus 160 i-~~~~~~~~----------------~~~~~~v~L~EiGPr~~l~l~kI 191 (191)
T PF04427_consen 160 I-FKSGSKNP----------------KKLLPRVELVEIGPRFTLKLRKI 191 (191)
T ss_dssp -------------------------------------------------
T ss_pred c-cccccccc----------------cccccccccccccccccccccCC
Confidence 3 21111000 00002259999999999999987
No 6
>smart00879 Brix Brix domain. The Brix domain is found in a number of eukaryotic proteins including SSF proteins from yeast and humans, Arabidopsis thaliana Peter Pan-like protein and several hypothetical proteins.
Probab=100.00 E-value=3.7e-37 Score=262.12 Aligned_cols=170 Identities=46% Similarity=0.716 Sum_probs=147.3
Q ss_pred EEEcCCCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEc--CCCCCeEEEEeCCCCceEEEE
Q 024088 46 LITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTN--RREPDALLIIGLPDGPTAHFK 123 (272)
Q Consensus 46 LIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~--~~~p~~L~I~~lP~GPT~~F~ 123 (272)
|||+||+||+++++|++||+.++|++.+..|+++.+++++++|...+.++.+++.+. +++|.+|||+++|.|||++|.
T Consensus 1 lit~sr~~s~~~r~~~~dL~~~~~~~~~~~r~~~~~~~~~e~~~~~~~~~~i~v~e~~~k~~p~~L~i~~~~~gp~l~f~ 80 (180)
T smart00879 1 LITTSRKPSKRTRQLAKDLRRLFPPSTKINRGKNKLNELLEFASEKGNTDLLVVFESSSKGRPLNLTIYRLPNGPTLDFK 80 (180)
T ss_pred CEEcCCCCCHHHHHHHHHHHHHCCCcEeecccCccHHHHHHHHHHcCCccEEEEecccCCCCCceEEEEECCCCCcEEEE
Confidence 689999999999999999999999999999999999999999998855555555666 788999999999999999999
Q ss_pred Ecceeehhhhcc--CCCC-CCCCcEEEccCCCCchhhHHHHHHHhhCCCCCCC-----CCCeEEEEEecCCeEEEEeeee
Q 024088 124 LSKLVLRKDIKN--HGNP-TGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEF-----RGRRVVTFHNQRDFIFFRHHRY 195 (272)
Q Consensus 124 I~n~~l~~di~~--~~~~-~~~~P~LilnnF~t~~g~~i~~~l~~lFp~~p~~-----~~rRVv~f~~~~d~I~fRhY~y 195 (272)
+.++.+.+|+.. .+++ .+++|+|||+||..+.+++++.+|+.|||..+.. ..+|||+|++++|.||||||+|
T Consensus 81 i~~v~~~~~~~~~~~~~~~~~~~P~li~~~~~~~~~~~~k~~l~~~F~~~~~~~~~~~~~~rvi~f~~~~~~I~~R~y~i 160 (180)
T smart00879 81 ILNVSLRKELKGFKTGNCLTGSRPLLIFNNFFTELGKLIKELFQDLFPGPPEHKKSLPGLRRVVTFSNQDDYIFFRHYRI 160 (180)
T ss_pred EECcccHhhhhhhhcCCCcCCCccEEEECCCCCchHHHHHHHHHHHCCCCCccccccCCCCEEEEEEecCCEEEEEEEEE
Confidence 999999999987 3444 5789999999999999999999999999983322 5899999999999999999966
Q ss_pred EEeeccCCCCCCCCCcccchhhhhccccccceeeeeecceeEE
Q 024088 196 IFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTL 238 (272)
Q Consensus 196 ~i~~~~~~~~~~~~~~~~d~~~~~~~~~~i~v~L~EIGPR~tL 238 (272)
.+..... +++|+||||||+|
T Consensus 161 ~~~~~~~-----------------------~v~l~eiGPr~~l 180 (180)
T smart00879 161 KFGKKKP-----------------------RVELQEIGPRFTL 180 (180)
T ss_pred EccCCCC-----------------------ceEEEEecCCccC
Confidence 5411111 2599999999986
No 7
>COG5154 BRX1 RNA-binding protein required for 60S ribosomal subunit biogenesis [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-37 Score=266.13 Aligned_cols=194 Identities=20% Similarity=0.316 Sum_probs=169.8
Q ss_pred CCCeEEEEcCCCCCCcHHHHHHHHhhcCCCceeccc--CCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCc
Q 024088 41 CAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKR--GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 118 (272)
Q Consensus 41 ~~pkiLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R--~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GP 118 (272)
.++++||++||++|-+.|||++||..++|||+...+ -+..+.++.++|..++|+++++|..++....|||+++.|+||
T Consensus 29 ~kq~~lilSsRGvsyr~RHL~~Dls~l~phskke~KlD~kk~l~qLnelaelynCnn~lFFesrkr~Dlyl~~ar~pnGp 108 (283)
T COG5154 29 PKQTSLILSSRGVSYRIRHLMKDLSRLVPHSKKEQKLDMKKNLGQLNELAELYNCNNMLFFESRKRSDLYLMGARIPNGP 108 (283)
T ss_pred ccceEEEEecCCchHHHHHHHHHHHHhCcccccccccchhhhHHHHHHHHHHhcCCceEEEeecccccceeeeccCCCCC
Confidence 488999999999999999999999999999987655 377899999999999999999998888878899999999999
Q ss_pred eEEEEEcceeehhhhccCCCCC-CCCcEEEcc-CCCC-chhhHHHHHHHhhCCC--CC---CCCCCeEEEEEecCCeEEE
Q 024088 119 TAHFKLSKLVLRKDIKNHGNPT-GHIPELVLN-NFAT-RLGHRVGRLIQSLFPQ--SP---EFRGRRVVTFHNQRDFIFF 190 (272)
Q Consensus 119 T~~F~I~n~~l~~di~~~~~~~-~~~P~Liln-nF~t-~~g~~i~~~l~~lFp~--~p---~~~~rRVv~f~~~~d~I~f 190 (272)
|+.|+++|.++|.|+...||+. +++|.|.|+ .|.+ ++.+.++++|++.|.. +. +...++|++|.+.+|.||+
T Consensus 109 tvkF~~~NlhTMdelNftgN~lKgsrpvLsFdk~Fe~~pHlk~~Kell~h~F~ip~~arrSkpfiD~v~~f~i~DgkIWv 188 (283)
T COG5154 109 TVKFRMHNLHTMDELNFTGNSLKGSRPVLSFDKEFEDIPHLKYAKELLEHIFGIPKGARRSKPFIDKVLCFFILDGKIWV 188 (283)
T ss_pred eEEEEEeccchHhhcCCccccccCCcceEeeccccccchHHHHHHHHHHHhccCCCcccccccchhheEEEEEecCeEEE
Confidence 9999999999999999999986 589999998 6876 7889999999999965 21 1368999999999999999
Q ss_pred EeeeeEEeeccCCCCCCCCCcccchhhhhccccccceeeeeecceeEEEEEEEecCcCCCCcceE
Q 024088 191 RHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEF 255 (272)
Q Consensus 191 RhY~y~i~~~~~~~~~~~~~~~~d~~~~~~~~~~i~v~L~EIGPR~tL~L~kI~~G~f~g~~~~~ 255 (272)
|.| .|...... +.+. |+|.||||||+|.+++|.+|+|+|.+.|-
T Consensus 189 R~Y--eI~re~ed-----------------~~~d--v~L~EIGPRfVmtvi~iLEgsFgGp~iYk 232 (283)
T COG5154 189 RCY--EIGRENED-----------------KSKD--VKLEEIGPRFVMTVIKILEGSFGGPAIYK 232 (283)
T ss_pred EEE--eecccccc-----------------cccc--ceeeeeccHHHHHHHHHHHhccCCceeee
Confidence 999 77421111 0112 59999999999999999999999998764
No 8
>COG2136 IMP4 Predicted exosome subunit/U3 small nucleolar ribonucleoprotein (snoRNP) component, contains IMP4 domain [Translation, ribosomal structure and biogenesis / RNA processing and modification]
Probab=100.00 E-value=3.1e-33 Score=240.91 Aligned_cols=181 Identities=37% Similarity=0.581 Sum_probs=170.2
Q ss_pred CeEEEEcCCCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeC-CCCceEE
Q 024088 43 PKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL-PDGPTAH 121 (272)
Q Consensus 43 pkiLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~l-P~GPT~~ 121 (272)
||+||||||+||.++++|++||..++||+.+..||+.++.++.+.|...|.++++|++|.+|+|..|.++++ |.||++.
T Consensus 2 ~~~liTTSRkPS~Rtr~Fak~L~~~lp~~~~~~rg~~~~~el~~~a~~~g~~~l~iv~E~rGnP~~L~f~d~~~~~~~~~ 81 (191)
T COG2136 2 PKMLLTTSRKPSRRTRSFAKDLSRVLPNAYFLRRGKKSIIELSEEAIARGATDLLIVGERRGNPARLTFYDLEPEGLTFS 81 (191)
T ss_pred CcEEEEecCCccHHHHHHHHHHHHhCCcceEEecCccchhHHHHHHHhcCCceEEEEEEecCCCcEEEEEEecCCCceEE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred EEEcceeehhhhccCCC-CCCCCcEEEccCCCCchh-hHHHHHHHhh----CCCCCCCCCCeEEEEEecCCeEEEEeeee
Q 024088 122 FKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLG-HRVGRLIQSL----FPQSPEFRGRRVVTFHNQRDFIFFRHHRY 195 (272)
Q Consensus 122 F~I~n~~l~~di~~~~~-~~~~~P~LilnnF~t~~g-~~i~~~l~~l----Fp~~p~~~~rRVv~f~~~~d~I~fRhY~y 195 (272)
|+|+|+.+.+++...+. ...+.|++|++||.+..+ ..++++|+.+ |+++++.....|+.++++.+++.||+|.|
T Consensus 82 f~l~~v~l~re~~~~~~~~~~~~~~~I~~~~~~~~g~~~~~~~~~~~~~~~f~~~~~~~~~~v~~~~~~~~f~~~~~~~~ 161 (191)
T COG2136 82 FKLSGVKLRREIPVLGPKSRLHGPELIFNNFTTLLGFLKVAEAFSELLLVKFVPNPAWEHELVATGANKGDFKSLRRHRR 161 (191)
T ss_pred EEEecceEEEeccccCCcccCCCCceeeecccccccchhhHHHHHhhcccccccCcccceeeeeeccccceEEEEEeeee
Confidence 99999999999999887 557899999999999888 7999999999 88877777899999999999999999999
Q ss_pred EEeeccCCCCCCCCCcccchhhhhccccccceeeeeecceeEEEEEEEecCcC
Q 024088 196 IFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTF 248 (272)
Q Consensus 196 ~i~~~~~~~~~~~~~~~~d~~~~~~~~~~i~v~L~EIGPR~tL~L~kI~~G~f 248 (272)
.+.. .+ +.++|+||||+|+|..+++|..
T Consensus 162 ~~~~--~~-----------------------~~~~~vgp~~~~r~~~~~~g~~ 189 (191)
T COG2136 162 VFEE--DG-----------------------IGLEEVGPRLTLRLWRMEDGRG 189 (191)
T ss_pred Eeee--ee-----------------------eeEEEeCceeeeehhhhhhccc
Confidence 8865 22 4899999999999999999943
No 9
>PRK03972 ribosomal biogenesis protein; Validated
Probab=99.95 E-value=2.7e-26 Score=199.10 Aligned_cols=125 Identities=20% Similarity=0.343 Sum_probs=113.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCC---CceEE
Q 024088 45 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPD---GPTAH 121 (272)
Q Consensus 45 iLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~---GPT~~ 121 (272)
+|||||++||+++++|++||..+|||+.+++||+.+++|+++.|..+|+|++|+++|++|+|+.|.|+|||. |||++
T Consensus 2 iLITTSr~PS~rtr~F~keL~~v~Pns~~i~RGk~~lkel~~~A~~~g~TdLIVV~E~rg~P~~L~i~hLP~gP~GPTa~ 81 (208)
T PRK03972 2 MLITTSHRPTRRTRSFGHDLERVFPNSLYLTRGKKTIQDLLMEAYDRGYERLLIINVWKGNPLKMTFIKVGPEDWGYLGY 81 (208)
T ss_pred EEEECCCCccHHHHHHHHHHHHhCCCCEEEecCCccHHHHHHHHHHCCCCeEEEEecCCCcCCeEEEEcCCCCCCCceEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999999985 55999
Q ss_pred EEEcceeehhhh--ccCCCCCCCCcEEEccCCCCchhh-HHHHHHHhhCCC
Q 024088 122 FKLSKLVLRKDI--KNHGNPTGHIPELVLNNFATRLGH-RVGRLIQSLFPQ 169 (272)
Q Consensus 122 F~I~n~~l~~di--~~~~~~~~~~P~LilnnF~t~~g~-~i~~~l~~lFp~ 169 (272)
|+|+|+.+.+|| ++.+..+.+.|++|.++|.+..+. ..+..+.+.+.-
T Consensus 82 FkLsnV~l~~ei~~~~~~~~s~~~p~iItts~kt~~g~~~~Ak~lA~eLgi 132 (208)
T PRK03972 82 LYLHGIKLQREMGFRNLRPIREDMPLVITTAKRVGLDHMAFAQVFAELTGG 132 (208)
T ss_pred EEEccEEEHHHcccCCCCCccccccEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 999999999999 457778889999999999998865 555555555554
No 10
>PRK00933 ribosomal biogenesis protein; Validated
Probab=99.26 E-value=1.1e-10 Score=98.92 Aligned_cols=114 Identities=20% Similarity=0.398 Sum_probs=85.9
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEEEEE
Q 024088 45 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKL 124 (272)
Q Consensus 45 iLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~F~I 124 (272)
++||||++||.++++|+++|...+ |+.+.+|++.+++++++.|.. .++++++|.+++|+.|.|+.+-..+.+.+.+
T Consensus 1 mIITTSrkPs~~t~~fAkeLa~~l-n~~yv~Rgk~Sl~eL~~~~~~---~~llVV~E~kg~P~~L~iyd~~~~~~~~~~~ 76 (165)
T PRK00933 1 MIITTSRKPSQRTRSLVKDLARFL-NCKYVNRGKMSLQELLEECEA---RYLLIIGEYKGNPGALKFYDVEGNKLLSYRL 76 (165)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHh-CCEEEccCCccHHHHHHHhcc---CcEEEEECCCCCCceEEEEECCCCEEEEEEE
Confidence 489999999999999999999999 999999999999999877653 5999999999999999999998778777655
Q ss_pred cceeehhhhccCCCCCCCCcEEEccCCCCchhhHHHHHHHhhC
Q 024088 125 SKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLF 167 (272)
Q Consensus 125 ~n~~l~~di~~~~~~~~~~P~LilnnF~t~~g~~i~~~l~~lF 167 (272)
++.+..+... .......|. .++++. .+..++++|....
T Consensus 77 -~v~~~~~~~~-~~~~~~~p~--~~~~~~-~~~~~~e~f~~~l 114 (165)
T PRK00933 77 -SVKLQREISG-PVFKNRRPI--KSAFDV-GGDELAELFDYFL 114 (165)
T ss_pred -EeeeecccCc-ceeecCCCc--ccchhh-HHHHHHHHHHHHH
Confidence 4666665532 122234443 333332 1455666665544
No 11
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.9e-09 Score=94.17 Aligned_cols=174 Identities=16% Similarity=0.223 Sum_probs=130.9
Q ss_pred CCCCcHHHHHHHHhhcC-CCceecccCCcc-----HHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCce---EEE
Q 024088 52 FNSNRGPAFISELLSVI-PNSHYYKRGTYD-----LKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPT---AHF 122 (272)
Q Consensus 52 ~ps~~~r~f~kdL~~l~-Pns~~~~R~k~~-----lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT---~~F 122 (272)
..+..+.+-|.||-.+= |......|+++. -.-+......+.|+=+++-+.+++.|.+|.|.+.=++-- +-+
T Consensus 37 ~~~~tl~~vm~dl~alKKp~~i~~~rkN~i~pFEd~ssleffseK~D~slfv~gs~sKKrp~nLv~gR~fd~~vlDMiEl 116 (307)
T KOG3031|consen 37 KTNKTLLDVMKDLYALKKPLEIRYNRKNNIHPFEDPSSLEFFSEKNDCSLFVLGSHSKKRPNNLVIGRTFDYEVLDMIEL 116 (307)
T ss_pred hhchHHHHHHHHHHHhccCceeeeccCCCcccCCCCchHHHHhhhhhhhhhhhccccccCCCceEEEEecCchhhHHHHH
Confidence 44467788899997774 988888876421 334566778888998888888999999999988876643 578
Q ss_pred EEcceeehhhhccCCCCCCCCcEEEccCC--C-CchhhHHHHHHHhhCCC-CCC----CCCCeEEEEEecCCe-EEEEee
Q 024088 123 KLSKLVLRKDIKNHGNPTGHIPELVLNNF--A-TRLGHRVGRLIQSLFPQ-SPE----FRGRRVVTFHNQRDF-IFFRHH 193 (272)
Q Consensus 123 ~I~n~~l~~di~~~~~~~~~~P~LilnnF--~-t~~g~~i~~~l~~lFp~-~p~----~~~rRVv~f~~~~d~-I~fRhY 193 (272)
.|.||...+|.....-..+..|.|+|.|+ . ++..++++.+|--.|-- .++ ...++|+.|...++. |+||||
T Consensus 117 gI~~ykslsdF~~~k~~~gtKP~l~f~G~~f~~~~~~krlknL~vDfFrge~vd~v~l~Gl~~v~vfta~~~~~v~~r~Y 196 (307)
T KOG3031|consen 117 GIENYKSLSDFKAAKITEGTKPMLIFQGAVFDQHPEYKRLKNLFVDFFRGEKVDKVRLAGLEYVIVFTATEETNVLFRVY 196 (307)
T ss_pred hhhhhhhhhhhhccCCCCCCCceEEEecchhccChHHHHHHHHHHHHHcCCcccceeeccccEEEEEEeecCceeeeeee
Confidence 89999999998775533578999999974 4 35667999999999975 222 246899999976555 999999
Q ss_pred eeEEeeccCCCCCCCCCcccchhhhhccccccceeeeeecceeEEEEEEEec
Q 024088 194 RYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQH 245 (272)
Q Consensus 194 ~y~i~~~~~~~~~~~~~~~~d~~~~~~~~~~i~v~L~EIGPR~tL~L~kI~~ 245 (272)
+......... .-++.|.|+||++.|.+.+..-
T Consensus 197 ~lklkKs~~~--------------------~PRiELeE~GPsldf~irR~~~ 228 (307)
T KOG3031|consen 197 RLKLKKSGTR--------------------TPRIELEEMGPSLDFEIRRTKL 228 (307)
T ss_pred eeeeeeccCC--------------------CCceehhhcCCceeEEEEeccC
Confidence 6444322221 1246999999999999998873
No 12
>COG5106 RPF2 Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.00041 Score=61.71 Aligned_cols=183 Identities=18% Similarity=0.218 Sum_probs=116.2
Q ss_pred cHHHHHHHHhhc-CCCceecccCCcc-----HHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCC---ceEEEEEcc
Q 024088 56 RGPAFISELLSV-IPNSHYYKRGTYD-----LKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG---PTAHFKLSK 126 (272)
Q Consensus 56 ~~r~f~kdL~~l-~Pns~~~~R~k~~-----lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~G---PT~~F~I~n 126 (272)
.+...+=|+..+ .|....+.|+.+- ..-+--+++.+.|.-.+++...++.+.+|.+.+.=+= -.+-|.|.+
T Consensus 41 ~lldvi~d~~alkkp~~i~f~rkn~ihpfEd~SplEffseknd~~l~vl~ts~kKr~hnlt~~R~Fny~~~DMiEl~i~~ 120 (316)
T COG5106 41 TLLDVICDTEALKKPKEIGFIRKNTIHPFEDTSPLEFFSEKNDKKLSVLFTSVKKRRHNLTIGRAFNYELIDMIELKINR 120 (316)
T ss_pred hhhhhhcchhhhccchhhccccCCcccccccCCHHHHHHHhhhhhhhhhhhhccccccceeEEeecchHHHHHHHHhhhh
Confidence 334444455444 2666666665321 1113345667778888888888888888988765432 125677888
Q ss_pred eeehhhhccCCCCCCCCcEEEcc--CCCC-chhhHHHHHHHhhCCCCCCC-----CCCeEEEEEecC---C-----eEEE
Q 024088 127 LVLRKDIKNHGNPTGHIPELVLN--NFAT-RLGHRVGRLIQSLFPQSPEF-----RGRRVVTFHNQR---D-----FIFF 190 (272)
Q Consensus 127 ~~l~~di~~~~~~~~~~P~Liln--nF~t-~~g~~i~~~l~~lFp~~p~~-----~~rRVv~f~~~~---d-----~I~f 190 (272)
|....|....+-..+-.|.++|. +|++ +..+.|+.+|-..|.-.+.. .-..|++...+. | .+.|
T Consensus 121 yksvsdF~~~~~~~g~Kpmv~fQg~~fd~hp~yr~iksLflDFFrges~~~ldsagls~Vi~~t~~g~~~d~~plp~v~f 200 (316)
T COG5106 121 YKSVSDFECAGPELGMKPMVVFQGINFDAHPTYRRIKSLFLDFFRGESSKVLDSAGLSWVIARTEEGYVLDTYPLPLVVF 200 (316)
T ss_pred hhehhhhhccCCccCCceEEEEeccccccchHHHHHHHHHHHHHcCCchhhhhhcceeEEEEEecchhhhccccccceee
Confidence 99999988777667788999997 4775 66789999998888763321 235677776432 2 3578
Q ss_pred EeeeeEEeeccCCCCCCCCCcccchhhhhccccccceeeeeecceeEEEEEEEecCcCCCCcceEEEEeCC
Q 024088 191 RHHRYIFETKESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSLQHGTFDTKGGEFEWVHKP 261 (272)
Q Consensus 191 RhY~y~i~~~~~~~~~~~~~~~~d~~~~~~~~~~i~v~L~EIGPR~tL~L~kI~~G~f~g~~~~~~~v~k~ 261 (272)
|-|....-.... + --++.|.|+|||+.+++.++. .|+. .+|-+-..||
T Consensus 201 RVyk~k~~kt~~-----~---------------lpr~elee~GPrldf~i~R~~--~~s~-d~~~ealkkP 248 (316)
T COG5106 201 RVYKTKLLKTKT-----N---------------LPRLELEECGPRLDFEIVRSY--HCSD-DLYKEALKKP 248 (316)
T ss_pred eeeecccccccC-----C---------------CCceehhhcccceeeEEEeec--CCCh-HHHHHHhcCc
Confidence 988321111111 1 113589999999999999998 4443 2444444444
No 13
>PRK03972 ribosomal biogenesis protein; Validated
Probab=94.24 E-value=0.3 Score=42.99 Aligned_cols=76 Identities=24% Similarity=0.293 Sum_probs=57.1
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeC------CCCc
Q 024088 45 ILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGL------PDGP 118 (272)
Q Consensus 45 iLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~l------P~GP 118 (272)
.+|||+.+++......++.+...+ +..+.+|++.++.++. ...+...++|+..+-. ...+.++++ |-||
T Consensus 107 ~iItts~kt~~g~~~~Ak~lA~eL-gi~yV~R~k~Sl~~L~---~~~~~d~vLVV~~~~~-~~~~~~~~~~~~~~~~~~~ 181 (208)
T PRK03972 107 LVITTAKRVGLDHMAFAQVFAELT-GGKFVPRGGKSLQDIA---DKYNTDVLGVIERHPR-GMAVNFYRLDVTKERPVGP 181 (208)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh-CCceeCcCCcCHHHHH---hhhcCceEEEEecCCC-ceEEEEEEeccccccccCC
Confidence 589999999998888888887766 6778899999998776 4456788888855533 235666664 6789
Q ss_pred eEEEEEc
Q 024088 119 TAHFKLS 125 (272)
Q Consensus 119 T~~F~I~ 125 (272)
.+..++-
T Consensus 182 ~~~~~~~ 188 (208)
T PRK03972 182 LIFVKIW 188 (208)
T ss_pred cEEEEEE
Confidence 8887763
No 14
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=65.73 E-value=3.5 Score=38.35 Aligned_cols=40 Identities=35% Similarity=0.397 Sum_probs=31.1
Q ss_pred eeecceeEEEEEEEecCcCCCC--cceEEEEeCCCCCccccc
Q 024088 230 QECGPRFTLKLVSLQHGTFDTK--GGEFEWVHKPEMDTSRRR 269 (272)
Q Consensus 230 ~EIGPR~tL~L~kI~~G~f~g~--~~~~~~v~k~~~~~~r~~ 269 (272)
.-|||-|+|.+|.|+.|--..+ .+...+.||-.|-.+|-+
T Consensus 187 ~qvGP~F~lslY~lF~~~sr~~~~~~~~~~tWKE~~~ka~v~ 228 (302)
T PF05508_consen 187 VQVGPTFTLSLYMLFYGHSRPKYEEGLRKITWKEVMHKARVR 228 (302)
T ss_pred cccCCcEEEEeeheecccccccccccccCcceeeeccceEEE
Confidence 4689999999999999987653 355678888877766543
No 15
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=59.05 E-value=35 Score=24.56 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=49.4
Q ss_pred eEEEEcCC-CCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEE
Q 024088 44 KILITTCR-FNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121 (272)
Q Consensus 44 kiLIttSr-~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~ 121 (272)
.++|+... ..-.....+++.||..=-......+ ..++..-...|...|+..+|++....-....+.+..+..|-...
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~-~~~~~~~~~~a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~~ 80 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR-NEKLGKKIREAQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGS 80 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC-CCCHHHHHHHHHHcCCCEEEEECcchhhCCEEEEEECCCCccce
Confidence 44555532 2333566777777754112222233 46899999999999999999998775444567777776664433
No 16
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=54.78 E-value=37 Score=24.77 Aligned_cols=67 Identities=13% Similarity=-0.011 Sum_probs=43.2
Q ss_pred cHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEEEE
Q 024088 56 RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFK 123 (272)
Q Consensus 56 ~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~F~ 123 (272)
....++..|+..=-......+. .+++.-+..|...|+..++++.+..-....+.+-.+-.|-.....
T Consensus 19 ~a~~la~~Lr~~g~~v~~d~~~-~~l~k~i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~~~~~~ 85 (94)
T cd00861 19 LAEKLYAELQAAGVDVLLDDRN-ERPGVKFADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGEKEEIS 85 (94)
T ss_pred HHHHHHHHHHHCCCEEEEECCC-CCcccchhHHHhcCCCEEEEECCchhhCCEEEEEECCCCcceEEe
Confidence 3455666665431112222333 478888889999999999999877544446777777777555443
No 17
>PF04921 XAP5: XAP5, circadian clock regulator; InterPro: IPR007005 These proteins are found in a wide range of eukaryotes. Their function is uncertain though they are nuclear proteins, possibly with DNA-binding activity.; GO: 0005634 nucleus
Probab=51.78 E-value=24 Score=31.83 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=48.5
Q ss_pred hhhhhhcCCCCCeEEEEcCCCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEE
Q 024088 32 EFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 111 (272)
Q Consensus 32 e~~~~~~~~~~pkiLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I 111 (272)
.|+ |+.|..-|+. |...+ ...+.+|+.-.+..+. +++.+++.. ++.+||++-+.---|-...+
T Consensus 102 ~fs-ywDGs~hrr~-v~vKK--GdtI~~FL~~~r~~l~------------~~f~el~~v-svd~LM~VkedlIiPHhy~F 164 (239)
T PF04921_consen 102 PFS-YWDGSGHRRT-VRVKK--GDTIWQFLEKCRKQLA------------KEFRELRRV-SVDDLMYVKEDLIIPHHYTF 164 (239)
T ss_pred EEE-EECCCCCcce-EEEcC--CCCHHHHHHHHHHHHH------------HHhHHHHhc-CHhheeeeccceeccCCcee
Confidence 344 7778888883 33322 2357788877777765 445666654 88999999775444433333
Q ss_pred Ee-------CCCCceEEEEEcc
Q 024088 112 IG-------LPDGPTAHFKLSK 126 (272)
Q Consensus 112 ~~-------lP~GPT~~F~I~n 126 (272)
+. -+.||-+.|.+..
T Consensus 165 Y~fI~nka~GksGpLF~fd~~~ 186 (239)
T PF04921_consen 165 YDFIVNKARGKSGPLFDFDVHD 186 (239)
T ss_pred eeeeeccccCCCCCeeeccCCc
Confidence 22 2667777777765
No 18
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=45.35 E-value=96 Score=24.22 Aligned_cols=79 Identities=10% Similarity=-0.029 Sum_probs=51.4
Q ss_pred CCeEEEEcCC--C-CCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCc
Q 024088 42 APKILITTCR--F-NSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGP 118 (272)
Q Consensus 42 ~pkiLIttSr--~-ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GP 118 (272)
.+.++|+... . .......++..||.- ..+....-. .+++.-+..|...|+..++++.+..-....+.+..+..|-
T Consensus 26 p~~v~Ii~~~~~~~~~~~a~~la~~LR~~-gi~v~~d~~-~sl~kqlk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~~~~ 103 (121)
T cd00858 26 PIKVAVLPLVKRDELVEIAKEISEELREL-GFSVKYDDS-GSIGRRYARQDEIGTPFCVTVDFDTLEDGTVTIRERDSMR 103 (121)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHHHC-CCEEEEeCC-CCHHHHHHHhHhcCCCEEEEECcCchhCCEEEEEECCCCc
Confidence 4566777654 2 222456667777653 112222223 6899999999999999999999875444567787777765
Q ss_pred eEEE
Q 024088 119 TAHF 122 (272)
Q Consensus 119 T~~F 122 (272)
....
T Consensus 104 ~~~v 107 (121)
T cd00858 104 QVRV 107 (121)
T ss_pred eEEE
Confidence 4443
No 19
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=44.30 E-value=49 Score=24.27 Aligned_cols=82 Identities=17% Similarity=0.216 Sum_probs=55.2
Q ss_pred EEEEcCCCCCCcHHHHHHHHhhcCCCc---eecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEE
Q 024088 45 ILITTCRFNSNRGPAFISELLSVIPNS---HYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121 (272)
Q Consensus 45 iLIttSr~ps~~~r~f~kdL~~l~Pns---~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~ 121 (272)
|.|+.-..-+.....++.++...+.+. ....-...++..=+..|...|+..++++.+..-....+.|-.+-.|...+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~ 81 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEKELENGTVTVKDRDTGEQET 81 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECchhHhCCEEEEEECCCCcEEE
Confidence 344443222445667777777766322 22333778888889999999999999999776434578888888886666
Q ss_pred EEEcc
Q 024088 122 FKLSK 126 (272)
Q Consensus 122 F~I~n 126 (272)
..+.+
T Consensus 82 v~~~e 86 (94)
T PF03129_consen 82 VSLEE 86 (94)
T ss_dssp EECCH
T ss_pred EEHHH
Confidence 55543
No 20
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=42.40 E-value=79 Score=22.16 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=47.3
Q ss_pred CeEEEEcCCCC-CCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEE
Q 024088 43 PKILITTCRFN-SNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121 (272)
Q Consensus 43 pkiLIttSr~p-s~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~ 121 (272)
+.++|...... -.....++..|++-==...... ...++++....|...|+..++++.+.......+.+..+..|....
T Consensus 2 ~~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~-~~~~~~~~~~~a~~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~ 80 (91)
T cd00859 2 VDVYVVPLGEGALSEALELAEQLRDAGIKAEIDY-GGRKLKKQFKYADRSGARFAVILGEDELAAGVVTVKDLETGEQET 80 (91)
T ss_pred CcEEEEEcChHHHHHHHHHHHHHHHCCCEEEEec-CCCCHHHHHHHHHHcCCCEEEEEcHHHHhCCcEEEEECCCCCcEE
Confidence 35666654432 2356677888876411112212 223588899999999999999998543222356666666665433
No 21
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=38.63 E-value=1.6e+02 Score=22.41 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=44.4
Q ss_pred hhhhcCCCCCeEEEE-cC-CCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEE
Q 024088 34 SSILKQGCAPKILIT-TC-RFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 111 (272)
Q Consensus 34 ~~~~~~~~~pkiLIt-tS-r~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I 111 (272)
..+|..-..|=.|+. +. ...|..+++|++|+..+=|.-+........ ....+.+.... +..++++
T Consensus 11 ~~~f~~l~~pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~--~~~gIrF 77 (94)
T cd02974 11 KAYLERLENPVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPG--EDTGIRF 77 (94)
T ss_pred HHHHHhCCCCEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCC--CcccEEE
Confidence 345555556665544 33 467778999999999887765543322111 24555554333 3457999
Q ss_pred EeCCCC
Q 024088 112 IGLPDG 117 (272)
Q Consensus 112 ~~lP~G 117 (272)
+-+|.|
T Consensus 78 ~GiP~G 83 (94)
T cd02974 78 AGIPMG 83 (94)
T ss_pred EecCCc
Confidence 999988
No 22
>COG1783 XtmB Phage terminase large subunit [General function prediction only]
Probab=34.86 E-value=1.5e+02 Score=28.85 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=54.8
Q ss_pred CCe-EEEEcCCCCCCcHHHHHHHHhhcC--CCc-eeccc------CCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEE
Q 024088 42 APK-ILITTCRFNSNRGPAFISELLSVI--PNS-HYYKR------GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLI 111 (272)
Q Consensus 42 ~pk-iLIttSr~ps~~~r~f~kdL~~l~--Pns-~~~~R------~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I 111 (272)
.+| .++..+|+.++.--...+-+.++| |.+ ...-| +..+.++|.+.+..+|+++..+|.... +-+
T Consensus 23 ~qk~~i~~G~rGS~KSy~~alk~i~kl~~~~~~d~lvIR~v~nt~k~St~~~~~e~l~e~gv~~~f~~~~s~-----pe~ 97 (414)
T COG1783 23 NQKYFIAKGGRGSSKSYATALKNIEKLLSEPGIDVLVIREVENTHKQSTYALFKEALSELGVTKFFKISKSS-----PEI 97 (414)
T ss_pred hheEEEEEccCCCchhHHHHHHHHHHHHcCCCCcEEEEEEeccccchhHHHHHHHHHHHhCccceeEEecCC-----hhh
Confidence 345 444456666665555566666776 776 33333 233488899999999999998886662 336
Q ss_pred EeCCCCceEEEEEcc
Q 024088 112 IGLPDGPTAHFKLSK 126 (272)
Q Consensus 112 ~~lP~GPT~~F~I~n 126 (272)
.+.+.|--+.|+...
T Consensus 98 i~~~~G~ri~F~G~d 112 (414)
T COG1783 98 ILKDTGQRIIFKGLD 112 (414)
T ss_pred eecccCcEEEEecCC
Confidence 688999988888654
No 23
>KOG3112 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.75 E-value=42 Score=29.90 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=32.9
Q ss_pred cHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEEEE
Q 024088 80 DLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFK 123 (272)
Q Consensus 80 ~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~F~ 123 (272)
--++|+++++..|+.++||++...+ ...+...+..||..|.-
T Consensus 101 F~e~l~~~~kSSG~~~VIVLSss~~--~~~~~L~~srgP~~Y~l 142 (262)
T KOG3112|consen 101 FQEELVELLKSSGARRVIVLSSSFG--FEKRVLEESRGPWAYRL 142 (262)
T ss_pred HHHHHHHHHHhcCCceEEEEecchH--HHhhhhhhccCCeeEEc
Confidence 3567899999999999999988754 34556677889987754
No 24
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=31.18 E-value=83 Score=28.18 Aligned_cols=86 Identities=15% Similarity=0.186 Sum_probs=47.3
Q ss_pred CccHHHHHHHhHhCCCCEEEE-EEEcCCCCCeEEEEeCCCCceEEEEEcceeehhhhccCCCCCCCCcEEE-c-cCCCCc
Q 024088 78 TYDLKKIIEYAKKKDFTSIIV-VHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELV-L-NNFATR 154 (272)
Q Consensus 78 k~~lkdl~~~a~~~g~t~lii-~~e~~~~p~~L~I~~lP~GPT~~F~I~n~~l~~di~~~~~~~~~~P~Li-l-nnF~t~ 154 (272)
.-+...++ -|-..||..+=+ ++. +......|+| |-|++-.|.=-.-.+.|+..+-..+.+|+++ + +.++.+
T Consensus 29 ~ss~~~y~-~aL~~GcRcvElD~Wd--g~~~ep~V~H---G~t~ts~i~f~dvl~~I~~~aF~~s~yPvILslE~hcs~~ 102 (228)
T cd08599 29 RSSTAPII-EALLRGCRVIELDLWP--GGRGDICVLH---GGTLTKPVKFEDCIKAIKENAFTASEYPVIITLENHLSPE 102 (228)
T ss_pred ccCHHHHH-HHHHhCCCEEEEEeec--CCCCCeEEEe---CCCCcCCcCHHHHHHHHHHHhccCCCCCEEEEEecCCCHH
Confidence 34455544 455789987744 433 3222355554 6554433322222233333333346789654 3 578877
Q ss_pred hhhHHHHHHHhhCCC
Q 024088 155 LGHRVGRLIQSLFPQ 169 (272)
Q Consensus 155 ~g~~i~~~l~~lFp~ 169 (272)
....++++|+..|+.
T Consensus 103 qQ~~~a~~l~~~lGd 117 (228)
T cd08599 103 LQAKAAQILRETLGD 117 (228)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777888888877764
No 25
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.03 E-value=1.8e+02 Score=28.51 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCCC-CcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCC
Q 024088 40 GCAPKILITTCRFNS-NRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDG 117 (272)
Q Consensus 40 ~~~pkiLIttSr~ps-~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~G 117 (272)
...+.++|....... .....+++.||.-=+.+......+. ++.-...|...|+..++++.+..-....+.|-++-.|
T Consensus 333 ~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~-~k~q~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~ 410 (429)
T COG0124 333 ETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRK-LKKQFKYADKLGARFAVILGEDELANGVVTVKDLATG 410 (429)
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEecccc-HHHHHHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCC
Confidence 347788888876664 6888999999987666654433333 8888999999999999999998754556777777766
No 26
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=29.31 E-value=1.4e+02 Score=26.77 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=49.2
Q ss_pred CCccHHHHHHHhHhCCCCEEEE-EEEcCCCCCeEEEEeCCCCceEEEEEcceeehhhhccCCCCCCCCcEEE-c-cCCCC
Q 024088 77 GTYDLKKIIEYAKKKDFTSIIV-VHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELV-L-NNFAT 153 (272)
Q Consensus 77 ~k~~lkdl~~~a~~~g~t~lii-~~e~~~~p~~L~I~~lP~GPT~~F~I~n~~l~~di~~~~~~~~~~P~Li-l-nnF~t 153 (272)
+..++..+.. |-..||..+=+ ++..++ ....|+| |.|++-.|.=-...+.|+..+-..+.+|.++ + +.++.
T Consensus 28 ~ess~eay~~-AL~~GcR~vElDvwdg~d--gePvV~H---G~tlts~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hcs~ 101 (229)
T cd08592 28 SESSLEAYAR-CLRMGCRCIELDCWDGPD--GMPIIYH---GHTLTSKIKFMDVLKTIKEHAFVTSEYPVILSIENHCSL 101 (229)
T ss_pred CccCHHHHHH-HHHhCCCEEEEEeecCCC--CCEEEEe---CCcCCCCcCHHHHHHHHHHHhccCCCCCEEEEEecCCCH
Confidence 4667777666 45599998754 444322 2455655 7776633332222222333333345788765 4 45776
Q ss_pred chhhHHHHHHHhhCCC
Q 024088 154 RLGHRVGRLIQSLFPQ 169 (272)
Q Consensus 154 ~~g~~i~~~l~~lFp~ 169 (272)
+....+++++...|..
T Consensus 102 ~qQ~~ma~il~~~lGd 117 (229)
T cd08592 102 PQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 6666777777776654
No 27
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=28.93 E-value=3.5e+02 Score=24.73 Aligned_cols=78 Identities=12% Similarity=0.201 Sum_probs=45.1
Q ss_pred CCCeEEEEcCCCCCC--cHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcC-----CC-CCeEEEE
Q 024088 41 CAPKILITTCRFNSN--RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNR-----RE-PDALLII 112 (272)
Q Consensus 41 ~~pkiLIttSr~ps~--~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~-----~~-p~~L~I~ 112 (272)
....|||++-+...- .-..++.+|=.-==.+.+......++.|+.+.|...|+++++++.+.. +. --.|+|-
T Consensus 4 ~RCDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel~~~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK 83 (273)
T PF12745_consen 4 SRCDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEELQSYCREDGISWIVIIKQKEKSSSSKSKYKPLKVK 83 (273)
T ss_pred CcceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHHHHHHHHCCCCEEEEEecccccccCCCccCceEEe
Confidence 456788865443321 112333333211011223344567999999999999999999998853 11 0126666
Q ss_pred eCCCCc
Q 024088 113 GLPDGP 118 (272)
Q Consensus 113 ~lP~GP 118 (272)
++-.+-
T Consensus 84 ~l~~~~ 89 (273)
T PF12745_consen 84 SLEKKK 89 (273)
T ss_pred ccCCCc
Confidence 665554
No 28
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=27.50 E-value=1.6e+02 Score=29.42 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=51.6
Q ss_pred hhhhhhcCCCCC-eEEEEcCC--CCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCC---CEEEEEEEcCCC
Q 024088 32 EFSSILKQGCAP-KILITTCR--FNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDF---TSIIVVHTNRRE 105 (272)
Q Consensus 32 e~~~~~~~~~~p-kiLIttSr--~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~---t~lii~~e~~~~ 105 (272)
....||..-..| .+.+++.. ..|..+++|++||..+=|.-+.......+=+ +.+..+|+ ..+.++... ++
T Consensus 356 ~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~---~~~~~~~v~~~P~~~i~~~~-~~ 431 (555)
T TIGR03143 356 QLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEP---ESETLPKITKLPTVALLDDD-GN 431 (555)
T ss_pred HHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccch---hhHhhcCCCcCCEEEEEeCC-Cc
Confidence 356777766777 44455543 2677899999999988776554333222222 23334444 444444323 44
Q ss_pred CCeEEEEeCCCCceE
Q 024088 106 PDALLIIGLPDGPTA 120 (272)
Q Consensus 106 p~~L~I~~lP~GPT~ 120 (272)
..+++++-+|.|--+
T Consensus 432 ~~~i~f~g~P~G~Ef 446 (555)
T TIGR03143 432 YTGLKFHGVPSGHEL 446 (555)
T ss_pred ccceEEEecCccHhH
Confidence 567999999999543
No 29
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=27.25 E-value=84 Score=29.13 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=32.3
Q ss_pred hcCCCceeccc------CCccHHHHHHHhHhCCCCEEEEEEEcCCC
Q 024088 66 SVIPNSHYYKR------GTYDLKKIIEYAKKKDFTSIIVVHTNRRE 105 (272)
Q Consensus 66 ~l~Pns~~~~R------~k~~lkdl~~~a~~~g~t~lii~~e~~~~ 105 (272)
+++|.++..++ ++=.++-+++-|...|++++++++...++
T Consensus 17 RfLPATKaiPKEMLPIvdKP~IqYiVeEa~~aGIe~i~iVTgr~K~ 62 (291)
T COG1210 17 RFLPATKAIPKEMLPIVDKPLIQYIVEEAVAAGIEEILIVTGRGKR 62 (291)
T ss_pred ccccccccCchhhccccCchhHHHHHHHHHHcCCCEEEEEecCCcc
Confidence 35677777666 46678889999999999999999887664
No 30
>KOG3031 consensus Protein required for biogenesis of the ribosomal 60S subunit [Translation, ribosomal structure and biogenesis]
Probab=26.37 E-value=99 Score=28.68 Aligned_cols=45 Identities=20% Similarity=0.398 Sum_probs=34.6
Q ss_pred hHhCCCCEEEEEEEcCCCCCeEEEEeC---------CC------CceEEEEEcceeehhh
Q 024088 88 AKKKDFTSIIVVHTNRREPDALLIIGL---------PD------GPTAHFKLSKLVLRKD 132 (272)
Q Consensus 88 a~~~g~t~lii~~e~~~~p~~L~I~~l---------P~------GPT~~F~I~n~~l~~d 132 (272)
-..-|..|+|+|+........+++|.+ |. ||++-|.|-..+++.|
T Consensus 172 v~l~Gl~~v~vfta~~~~~v~~r~Y~lklkKs~~~~PRiELeE~GPsldf~irR~~~asd 231 (307)
T KOG3031|consen 172 VRLAGLEYVIVFTATEETNVLFRVYRLKLKKSGTRTPRIELEEMGPSLDFEIRRTKLASD 231 (307)
T ss_pred eeeccccEEEEEEeecCceeeeeeeeeeeeeccCCCCceehhhcCCceeEEEEeccCCCH
Confidence 345689999999998776557777654 42 8999999988887765
No 31
>PF15210 SFTA2: Surfactant-associated protein 2
Probab=25.47 E-value=41 Score=23.33 Aligned_cols=9 Identities=56% Similarity=0.929 Sum_probs=8.0
Q ss_pred cceeEEEEE
Q 024088 233 GPRFTLKLV 241 (272)
Q Consensus 233 GPR~tL~L~ 241 (272)
||+|||.|.
T Consensus 2 GPgmtl~lK 10 (59)
T PF15210_consen 2 GPGMTLQLK 10 (59)
T ss_pred CCceEEEEE
Confidence 999999984
No 32
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=23.66 E-value=1.2e+02 Score=25.15 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=28.9
Q ss_pred cCCCceecccCCc-----cHHHHHHHhHhCCCCEEEEEEEcCC
Q 024088 67 VIPNSHYYKRGTY-----DLKKIIEYAKKKDFTSIIVVHTNRR 104 (272)
Q Consensus 67 l~Pns~~~~R~k~-----~lkdl~~~a~~~g~t~lii~~e~~~ 104 (272)
++|...|..-... .|.+.++.....|+.|+++++.+..
T Consensus 54 l~P~~~Y~~~~~~~~~~~~L~~w~~~l~~~GFkhV~~lT~D~~ 96 (142)
T PF10673_consen 54 LFPAFTYLKEEDEEELVERLNDWCEELKESGFKHVFYLTSDSE 96 (142)
T ss_pred ecCCeeeecccchhHHHHHHHHHHHHHHhcCCcEEEEEecCcc
Confidence 4588877655322 4788888899999999999988643
No 33
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=22.70 E-value=2.4e+02 Score=25.79 Aligned_cols=87 Identities=13% Similarity=0.199 Sum_probs=49.1
Q ss_pred CCccHHHHHHHhHhCCCCEEEE-EEEcCCCCCeEEEEeCCCCceEEEEEcceeehhhhccCCCCCCCCcEEE-c-cCCCC
Q 024088 77 GTYDLKKIIEYAKKKDFTSIIV-VHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELV-L-NNFAT 153 (272)
Q Consensus 77 ~k~~lkdl~~~a~~~g~t~lii-~~e~~~~p~~L~I~~lP~GPT~~F~I~n~~l~~di~~~~~~~~~~P~Li-l-nnF~t 153 (272)
+..++..+.. |-..||..+=+ ++... .....++| |.|++-.|.=-.-.+.|+..+-....+|.++ + |.++.
T Consensus 28 ~~ss~~~y~~-aL~~GcR~vElD~w~g~--~gepvV~H---g~tlts~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc~~ 101 (260)
T cd08597 28 GPSSVEGYVR-ALQRGCRCVELDCWDGP--NGEPVIYH---GHTLTSKISFRSVIEAINEYAFVASEYPLILCIENHCSE 101 (260)
T ss_pred CccCHHHHHH-HHHhCCCEEEEEeEcCC--CCCEEEEe---CCccccceEHHHHHHHHHHHhccCCCCCEEEEEecCCCH
Confidence 4566766655 44699998754 44332 22344555 7777644332222223333333345788765 4 45776
Q ss_pred chhhHHHHHHHhhCCC
Q 024088 154 RLGHRVGRLIQSLFPQ 169 (272)
Q Consensus 154 ~~g~~i~~~l~~lFp~ 169 (272)
+....++++|...|+.
T Consensus 102 ~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 102 KQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666777777777664
No 34
>COG5475 Uncharacterized small protein [Function unknown]
Probab=21.07 E-value=58 Score=22.76 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=11.3
Q ss_pred eeeeeecceeEEE
Q 024088 227 TRLQECGPRFTLK 239 (272)
Q Consensus 227 v~L~EIGPR~tL~ 239 (272)
|+|.|=|||||..
T Consensus 11 V~lKsGGP~Mtvs 23 (60)
T COG5475 11 VTLKSGGPRMTVS 23 (60)
T ss_pred EEeecCCceEEEe
Confidence 6999999999864
No 35
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=20.99 E-value=2.1e+02 Score=25.56 Aligned_cols=88 Identities=15% Similarity=0.190 Sum_probs=49.2
Q ss_pred CCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEEEEEcceeehhhhccCCCCCCCCcEEE-c-cCCCCc
Q 024088 77 GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELV-L-NNFATR 154 (272)
Q Consensus 77 ~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~F~I~n~~l~~di~~~~~~~~~~P~Li-l-nnF~t~ 154 (272)
+.-+...++. |-..||..+=+ .-..|......|+| |.|++-.|.=-...+.|+..+-....+|.++ + +.++.+
T Consensus 28 ~~Ss~~~y~~-aL~~GcRcvEl-D~wdg~~~eP~v~H---G~t~ts~i~f~dv~~~Ik~~aF~~s~yPvILslE~Hcs~~ 102 (226)
T cd08558 28 GESSVEAYIR-ALLRGCRCVEL-DCWDGPDGEPVVYH---GHTLTSKILFKDVIEAIKEYAFVTSPYPVILSLENHCSLE 102 (226)
T ss_pred CccCHHHHHH-HHHhCCcEEEE-EeecCCCCCeEEee---CCCCccceEHHHHHHHHHHHhcccCCCCeEEEEecCCCHH
Confidence 4555555555 44589987644 23333222455655 7676544332222233333343346788765 4 457776
Q ss_pred hhhHHHHHHHhhCCC
Q 024088 155 LGHRVGRLIQSLFPQ 169 (272)
Q Consensus 155 ~g~~i~~~l~~lFp~ 169 (272)
....++++|+..|..
T Consensus 103 qQ~~ma~~l~~~lGd 117 (226)
T cd08558 103 QQKKMAQILKEIFGD 117 (226)
T ss_pred HHHHHHHHHHHHHhh
Confidence 667888888887765
No 36
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=20.85 E-value=1.3e+02 Score=27.41 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=47.6
Q ss_pred CCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEEEEEcceeehhhhccCCCCCCCCcEEE-c-cCCCCc
Q 024088 77 GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELV-L-NNFATR 154 (272)
Q Consensus 77 ~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~F~I~n~~l~~di~~~~~~~~~~P~Li-l-nnF~t~ 154 (272)
+..++.-++. |-..||..+=+ .-..|....-.|.| |-|++-.|.=-...+-|+..+-..+.+|.++ + +.++.+
T Consensus 28 ~~ss~e~y~~-aL~~GcRcvEl-D~wdg~~~ep~v~H---G~tlt~~i~f~~v~~~I~~~AF~~s~yPvIlslE~Hcs~~ 102 (257)
T cd08595 28 GPSDLDGYVS-ALRKGCRCLEI-DCWDGADNEPVVYH---GYTLTSKILFKEVITTVEKYAFEKSDYPVVLSLENHCSTE 102 (257)
T ss_pred CcccHHHHHH-HHHhCCcEEEE-EeecCCCCCcEEec---CCCcccccCHHHHHHHHHHHhccCCCCCEEEEeeccCCHH
Confidence 4555655554 45589987655 22333222233444 7777644432222333333333346788765 4 457766
Q ss_pred hhhHHHHHHHhhCCC
Q 024088 155 LGHRVGRLIQSLFPQ 169 (272)
Q Consensus 155 ~g~~i~~~l~~lFp~ 169 (272)
....|+++++..|..
T Consensus 103 qQ~~~a~~l~~~lgd 117 (257)
T cd08595 103 QQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777776654
No 37
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=20.09 E-value=1.6e+02 Score=26.43 Aligned_cols=88 Identities=14% Similarity=0.160 Sum_probs=47.5
Q ss_pred CCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEEEEEcceeehhhhccCCCCCCCCcEEE-c-cCCCCc
Q 024088 77 GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELV-L-NNFATR 154 (272)
Q Consensus 77 ~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~F~I~n~~l~~di~~~~~~~~~~P~Li-l-nnF~t~ 154 (272)
+..+...++. |-..||..+=+ .-..+......|+| |-|++-.|.=-...+.|+..+-....+|.++ + +.++.+
T Consensus 28 ~~ss~~~y~~-aL~~GcRcvEl-D~wdg~~~ep~V~H---G~t~ts~i~f~dv~~~Ik~~aF~~s~yPvILslE~Hcs~~ 102 (231)
T cd08598 28 GDSSVEGYIR-ALQRGCRCVEI-DVWDGDDGEPVVTH---GYTLTSSVPFRDVCRAIKKYAFVTSPYPLILSLEVHCDAE 102 (231)
T ss_pred CccCHHHHHH-HHHhCCcEEEE-EeecCCCCCcEEee---CCCCcCceEHHHHHHHHHHHhccCCCCCEEEEEecCCCHH
Confidence 3455665555 44679987644 22333222344554 7665543332222223333333345788765 4 467776
Q ss_pred hhhHHHHHHHhhCCC
Q 024088 155 LGHRVGRLIQSLFPQ 169 (272)
Q Consensus 155 ~g~~i~~~l~~lFp~ 169 (272)
....++++|+..|..
T Consensus 103 qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 103 QQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777877777764
Done!