Query 024088
Match_columns 272
No_of_seqs 164 out of 723
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:00:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024088.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024088hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxh_A Probable BRIX-domain ri 100.0 4.7E-34 1.6E-38 249.9 17.3 147 22-173 16-167 (217)
2 1w94_A MIL, probable BRIX-doma 99.8 3.4E-20 1.2E-24 154.6 12.6 129 44-187 1-129 (156)
3 1xg7_A Hypothetical protein; s 13.0 1E+02 0.0035 26.8 2.5 31 32-77 74-104 (250)
4 1h4v_B Histidyl-tRNA synthetas 12.3 3.4E+02 0.012 24.3 6.1 76 43-120 329-405 (421)
5 1hym_B CMTI-V, hydrolyzed cucu 12.3 2.2E+02 0.0074 15.8 3.0 15 173-187 2-16 (26)
6 4a74_A DNA repair and recombin 11.4 3.3E+02 0.011 21.3 5.1 34 92-125 190-225 (231)
7 3jte_A Response regulator rece 10.9 4.4E+02 0.015 18.5 6.2 59 40-98 47-105 (143)
8 2fcg_F Cationic, antibacterial 10.9 1.5E+02 0.005 16.6 1.8 16 154-169 7-22 (26)
9 4g84_A Histidine--tRNA ligase, 10.4 2.5E+02 0.0085 25.6 4.5 84 43-126 367-451 (464)
10 3hdv_A Response regulator; PSI 9.2 5E+02 0.017 18.0 6.4 59 39-98 49-109 (136)
No 1
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=100.00 E-value=4.7e-34 Score=249.94 Aligned_cols=147 Identities=16% Similarity=0.177 Sum_probs=125.5
Q ss_pred hhhhcCCCcchhhhhhcCCCCCeEEEEcCCCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEE
Q 024088 22 DELFAGNDADEFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHT 101 (272)
Q Consensus 22 ~~~~~~~~~de~~~~~~~~~~pkiLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e 101 (272)
+|..+.+..|+|. +|...||+||||||+||.++++|++||+.+|||+.+.+|++.+|++|++.|..++|+++++|+|
T Consensus 16 ~~~~~~~g~~~~~---~~~~~pKvLITTSr~pS~r~r~fakeL~~~lPns~~i~Rgk~sLkeL~e~a~~~~~tdlivV~e 92 (217)
T 2cxh_A 16 PAGSHMLGGKGRP---SGVGGYRILVTTSRRPSPRIRSFVKDLSATIPGAFRFTRGHYSMEELAREAIIRGADRIVVVGE 92 (217)
T ss_dssp --------------------CCEEEEEESSSCCHHHHHHHHHHHTTSTTEEECCCTTCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccccccCcccc---cCCCCCeEEEEcCCCCCHHHHHHHHHHHHHCCCCEEeecCCcCHHHHHHHHHhCCCCEEEEEEe
Confidence 3455556668877 5778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEeCCCC---c-eEEEEEcceeehhhhccCCCCC-CCCcEEEccCCCCchhhHHHHHHHhhCCCCCCC
Q 024088 102 NRREPDALLIIGLPDG---P-TAHFKLSKLVLRKDIKNHGNPT-GHIPELVLNNFATRLGHRVGRLIQSLFPQSPEF 173 (272)
Q Consensus 102 ~~~~p~~L~I~~lP~G---P-T~~F~I~n~~l~~di~~~~~~~-~~~P~LilnnF~t~~g~~i~~~l~~lFp~~p~~ 173 (272)
++++|++|||+|+|.| | |++|+|+|+.+++|++.++++. .++|+|+ +||++++|+++++||++|||. |..
T Consensus 93 ~rg~p~~L~~~hlP~G~~~P~Ta~F~I~nv~l~~ei~~~g~~~~~~rP~L~-~nF~t~~g~~i~~~f~~lFp~-P~~ 167 (217)
T 2cxh_A 93 RRGNPGIIRVYAVEGPERPDNIVSFIVKGVSLSRERRWGLPSLRGGEVLVA-RPLDSGVAVEFADAFVIAFHA-RLK 167 (217)
T ss_dssp ETTEEEEEEEEECCSSSCCEEEEEEEEEEEECHHHHTCCCCCCCSCCEEEE-EESSSSTHHHHHHHHHHHHCC-BSS
T ss_pred cCCCCcEEEEEECCCCCCCCcEEEEEEeeEEehhhhccCCCccCCCCceEE-eeecCchHHHHHHHHHHHcCC-CCC
Confidence 9999999999999999 9 9999999999999999999874 6899999 999999999999999999998 653
No 2
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=99.83 E-value=3.4e-20 Score=154.63 Aligned_cols=129 Identities=16% Similarity=0.246 Sum_probs=105.9
Q ss_pred eEEEEcCCCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEEEE
Q 024088 44 KILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFK 123 (272)
Q Consensus 44 kiLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~F~ 123 (272)
|++||||++||.++++|+++|..++ |+.+.+|++.+++++++.|... +++++|++|+|+.|.|+|+|.|||++|+
T Consensus 1 kilITTSr~Ps~~l~~fakeLa~~l-n~~~v~Rgk~sl~~L~~~~~~~----~iVV~e~rg~P~~l~i~hlp~gpt~~f~ 75 (156)
T 1w94_A 1 HMLLTTSRKPSQRTRSFSQRLSRIM-GWRYINRGKMSLRDVLIEARGP----VAVVSERHGNPARITFLDERGGERGYIL 75 (156)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHHH-TCEECCCTTCCHHHHHHHHSSC----EEEEEEETTEEEEEEEECTTSCEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-CCEEEeeCCcCHHHHHHhcCCC----EEEEEcCCCCCCeEEEEeCCCCCEEEEE
Confidence 6899999999999999999999999 9999999999999999888543 9999999999999999999999999999
Q ss_pred EcceeehhhhccCCCCCCCCcEEEccCCCCchhhHHHHHHHhhCCCCCCCCCCeEEEEEecCCe
Q 024088 124 LSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDF 187 (272)
Q Consensus 124 I~n~~l~~di~~~~~~~~~~P~LilnnF~t~~g~~i~~~l~~lFp~~p~~~~rRVv~f~~~~d~ 187 (272)
+ |+.+.+|++... |..|...+.++.+..+.++|. ||. .+...++|+++..+++.
T Consensus 76 ~-nv~l~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--~~~-~~~~~~~~~~i~~~~~~ 129 (156)
T 1w94_A 76 F-NPSFEMKKPELA------DKAVRVSSCPPGSEGLCNLMG--LEV-DESSSRDAWSIRTDEEY 129 (156)
T ss_dssp E-EEEECSSCCCCS------SCCCEESCCCTTCHHHHHHHT--CEE-CCSCCTTEEEEECCSSS
T ss_pred E-ceEEcccCcccC------CceEEEecCChhHHHHHHHHC--CCc-cCCCCceEEEEEeCCCc
Confidence 8 999999986322 333444456777777777766 344 23345689999754443
No 3
>1xg7_A Hypothetical protein; southeast collaboratory for structural genomics, secsg, hyperthermophIle, pyrococcus FU protein structure initiative; 1.88A {Pyrococcus furiosus} SCOP: a.96.1.6
Probab=13.01 E-value=1e+02 Score=26.75 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=23.6
Q ss_pred hhhhhhcCCCCCeEEEEcCCCCCCcHHHHHHHHhhcCCCceecccC
Q 024088 32 EFSSILKQGCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRG 77 (272)
Q Consensus 32 e~~~~~~~~~~pkiLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~ 77 (272)
||++||++. .+. .++.++...+++|.+..|.
T Consensus 74 ~Fs~yfs~~-----------~~~----~l~~~~~~Fl~~S~~n~Rl 104 (250)
T 1xg7_A 74 EFARYFSGR-----------EVD----SIWKAYGEFLPKSKNNRRL 104 (250)
T ss_dssp HHHHHHTTC-----------CCS----CHHHHHHHHTTTCSSCCSS
T ss_pred HHHHHHhcC-----------Chh----HHHHHHHHHHhhCchhHHH
Confidence 799999752 222 4888998899999887774
No 4
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=12.32 E-value=3.4e+02 Score=24.31 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=48.0
Q ss_pred CeEEEEcCC-CCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceE
Q 024088 43 PKILITTCR-FNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTA 120 (272)
Q Consensus 43 pkiLIttSr-~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~ 120 (272)
+.++|+.-. ........+++.|+.- -......+ ..+++.-...|...|+.++|++.+..-....+.|-.+..|-..
T Consensus 329 ~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~-~~~~~~~~~~a~~~g~p~~iivG~~e~~~~~v~vk~~~~~~~~ 405 (421)
T 1h4v_B 329 PDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALA-PRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQV 405 (421)
T ss_pred CeEEEEECChHHHHHHHHHHHHHHhc-CEEEEecC-CCCHHHHHHHHHhCCCCEEEEECchHhhcCcEEEEECCCCCce
Confidence 467776543 3333456777888875 23333333 3588888999999999999999765332234555555555433
No 5
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=12.29 E-value=2.2e+02 Score=15.82 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=11.6
Q ss_pred CCCCeEEEEEecCCe
Q 024088 173 FRGRRVVTFHNQRDF 187 (272)
Q Consensus 173 ~~~rRVv~f~~~~d~ 187 (272)
+.++||-.|.+.++.
T Consensus 2 f~~~RVrvfvd~~g~ 16 (26)
T 1hym_B 2 FRCNRVRIWVNKRGL 16 (26)
T ss_dssp CCTTEEEEEEETTTE
T ss_pred CCCCEEEEEECCCCc
Confidence 468899999886654
No 6
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=11.36 E-value=3.3e+02 Score=21.32 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=14.9
Q ss_pred CCCEEEEEEEcCCCCCeEEEEeCCCCce--EEEEEc
Q 024088 92 DFTSIIVVHTNRREPDALLIIGLPDGPT--AHFKLS 125 (272)
Q Consensus 92 g~t~lii~~e~~~~p~~L~I~~lP~GPT--~~F~I~ 125 (272)
.++.++++...+...-.+++.+.+.||+ +.|.|.
T Consensus 190 ~~d~~l~l~~~~~~~r~l~~~K~r~~~~~~~~f~i~ 225 (231)
T 4a74_A 190 SATLRVYLRKGKGGKRIARLIDAPHLPEGEAVFSIT 225 (231)
T ss_dssp CCSEEEEEEECTTSCEEEEEESCC--CCSCEEEEEE
T ss_pred hceEEEEEEecCCCeEEEEEEeCCCCCCceEEEEEe
Confidence 3455555544333223555555555544 344443
No 7
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=10.91 E-value=4.4e+02 Score=18.54 Aligned_cols=59 Identities=12% Similarity=0.036 Sum_probs=38.1
Q ss_pred CCCCeEEEEcCCCCCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEE
Q 024088 40 GCAPKILITTCRFNSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIV 98 (272)
Q Consensus 40 ~~~pkiLIttSr~ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii 98 (272)
...|-++|+-..-+......+++.|+...|+....-=....-.+....|...|+..++.
T Consensus 47 ~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~ 105 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLR 105 (143)
T ss_dssp TTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHHHHHHHHHTTCSEEEE
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHhCcceeEe
Confidence 45788888877777778889999999877766433222222233445566677766543
No 8
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=10.91 E-value=1.5e+02 Score=16.62 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=13.4
Q ss_pred chhhHHHHHHHhhCCC
Q 024088 154 RLGHRVGRLIQSLFPQ 169 (272)
Q Consensus 154 ~~g~~i~~~l~~lFp~ 169 (272)
.+|+.|+..|+++-|.
T Consensus 7 kIgQkIkdFf~~l~pr 22 (26)
T 2fcg_F 7 RIVQRIKDFLRNLVPR 22 (26)
T ss_dssp HHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHhcCcc
Confidence 3678999999999886
No 9
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=10.42 E-value=2.5e+02 Score=25.58 Aligned_cols=84 Identities=7% Similarity=0.152 Sum_probs=53.8
Q ss_pred CeEEEEcCCC-CCCcHHHHHHHHhhcCCCceecccCCccHHHHHHHhHhCCCCEEEEEEEcCCCCCeEEEEeCCCCceEE
Q 024088 43 PKILITTCRF-NSNRGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAH 121 (272)
Q Consensus 43 pkiLIttSr~-ps~~~r~f~kdL~~l~Pns~~~~R~k~~lkdl~~~a~~~g~t~lii~~e~~~~p~~L~I~~lP~GPT~~ 121 (272)
+.|+|..... .-.....++..|+.-=-.+...-.++.+++.-...|...|+.++||+.+..-....+.|-++-.|=...
T Consensus 367 ~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~l~~q~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~ 446 (464)
T 4g84_A 367 TQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVD 446 (464)
T ss_dssp CCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCSCSSCCHHHHHHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEE
Confidence 4577766432 223456788888864222333223455788888999999999999997764322356676777776555
Q ss_pred EEEcc
Q 024088 122 FKLSK 126 (272)
Q Consensus 122 F~I~n 126 (272)
..+.+
T Consensus 447 v~~~e 451 (464)
T 4g84_A 447 VRRED 451 (464)
T ss_dssp EEGGG
T ss_pred eeHHH
Confidence 55443
No 10
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=9.15 E-value=5e+02 Score=18.00 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=37.6
Q ss_pred CCCCCeEEEEcCCCCCCcHHHHHHHHhhc-CCCceeccc-CCccHHHHHHHhHhCCCCEEEE
Q 024088 39 QGCAPKILITTCRFNSNRGPAFISELLSV-IPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIV 98 (272)
Q Consensus 39 ~~~~pkiLIttSr~ps~~~r~f~kdL~~l-~Pns~~~~R-~k~~lkdl~~~a~~~g~t~lii 98 (272)
....|-++|+--.-|......+++.|+.. .|+....-= .... .+....|...|+..++.
T Consensus 49 ~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~-~~~~~~~~~~g~~~~l~ 109 (136)
T 3hdv_A 49 YQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTD-VEEAVDVMHLGVVDFLL 109 (136)
T ss_dssp HCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCC-HHHHHHHHHTTCSEEEE
T ss_pred hCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCC-hHHHHHHHhCCcceEEe
Confidence 33448888887777777888999999887 566543322 2222 33455566677776654
Done!