Query 024089
Match_columns 272
No_of_seqs 135 out of 163
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 18:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j0141 d.325.1.2 (4:1-50) Rib 6.7 97 0.0071 19.7 1.5 19 63-81 31-49 (50)
2 d1oede_ f.36.1.1 (E:) Acetylch 6.0 3.8E+02 0.028 20.3 5.4 10 158-169 2-11 (260)
3 d1oeda_ f.36.1.1 (A:) Acetylch 5.3 5.7E+02 0.041 18.9 6.5 16 195-210 32-47 (227)
4 d1oedc_ f.36.1.1 (C:) Acetylch 5.0 6E+02 0.044 18.8 6.2 25 195-220 32-56 (260)
5 d1tf3a3 g.37.1.1 (A:71-101) Tr 4.4 38 0.0028 19.7 -1.6 6 192-197 23-28 (31)
6 d1qjla_ g.46.1.1 (A:) Metallot 4.2 1.7E+02 0.013 16.3 1.4 13 3-15 10-22 (28)
7 d1ppjc2 f.21.1.2 (C:15-260) Mi 4.2 4.4E+02 0.032 21.0 4.6 58 164-224 64-121 (246)
8 d1vs6z1 d.325.1.2 (Z:1-70) Rib 2.8 2.9E+02 0.021 18.2 1.6 18 65-82 34-51 (70)
9 d3cx5c2 f.21.1.2 (C:1-261) Mit 2.6 9E+02 0.065 19.2 5.1 56 164-219 77-135 (261)
10 d1l8ya_ a.21.1.1 (A:) Nucleola 2.5 69 0.0051 22.5 -2.1 20 253-272 45-64 (84)
No 1
>d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]}
Probab=6.65 E-value=97 Score=19.66 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=15.1
Q ss_pred CcccccccccCccccCCCC
Q 024089 63 PVLHLSAASTPLLSGEQGS 81 (272)
Q Consensus 63 ~~~~~~~~s~~~~~~~~~~ 81 (272)
--.+.++++=|++||+|.-
T Consensus 31 ~~vdIcs~cHPFyTG~qk~ 49 (50)
T d2j0141 31 IYVEVCSKCHPFYTGQQRF 49 (50)
T ss_dssp SSCCSCCCCCSSSCCCSCC
T ss_pred EEEEECCCCCCcCCCeEEe
Confidence 3457888999999999863
No 2
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.99 E-value=3.8e+02 Score=20.27 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=4.7
Q ss_pred hhHHHHHhhccc
Q 024089 158 TYPFLEAIGKLP 169 (272)
Q Consensus 158 ~~Pll~~~~slP 169 (272)
+|-+..+| +|
T Consensus 2 lyY~~~li--lP 11 (260)
T d1oede_ 2 LFYIINII--AP 11 (260)
T ss_dssp CSHHHHHH--TH
T ss_pred cEEEEhHH--HH
Confidence 34444444 56
No 3
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=5.29 E-value=5.7e+02 Score=18.90 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=7.8
Q ss_pred hhHHHHHHHHHHHHHH
Q 024089 195 RFHVVMGMLLEIALQV 210 (272)
Q Consensus 195 RFNaMQAILLdI~L~l 210 (272)
|....-.++|-+..++
T Consensus 32 Ri~l~it~lL~~~v~~ 47 (227)
T d1oeda_ 32 KMTLSISVLLSLTVFL 47 (227)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred cEEeeHHHHHHHHHHH
Confidence 5554445555544433
No 4
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.99 E-value=6e+02 Score=18.82 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhchh
Q 024089 195 RFHVVMGMLLEIALQVVGTASTWLPY 220 (272)
Q Consensus 195 RFNaMQAILLdI~L~l~~li~~~lP~ 220 (272)
|...--.+||-+..++ .++...+|.
T Consensus 32 r~~l~it~lLs~~vf~-~~v~~~lP~ 56 (260)
T d1oedc_ 32 KMSTAISVLLAQAVFL-LLTSQRLPE 56 (260)
T ss_dssp CHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cEEeeHHHHHHHHHHH-HHHHHhCCC
Confidence 5555555555554333 233444553
No 5
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=4.38 E-value=38 Score=19.70 Aligned_cols=6 Identities=83% Similarity=1.531 Sum_probs=2.7
Q ss_pred ceehhH
Q 024089 192 HFFRFH 197 (272)
Q Consensus 192 ~FVRFN 197 (272)
||-|||
T Consensus 23 hfnrfh 28 (31)
T d1tf3a3 23 HFNRFH 28 (31)
T ss_dssp HHHHHT
T ss_pred HHhhhc
Confidence 444444
No 6
>d1qjla_ g.46.1.1 (A:) Metallothionein {Purple sea urchin (Strongylocentrotus purpuratus) [TaxId: 7668]}
Probab=4.22 E-value=1.7e+02 Score=16.27 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=7.9
Q ss_pred ccCccccCCCccC
Q 024089 3 LNGYTTLSGCVPT 15 (272)
Q Consensus 3 ~~~~~~~~~~~~~ 15 (272)
.|||.--+||..+
T Consensus 10 angckcgsgcsct 22 (28)
T d1qjla_ 10 ANGCKCGSGCSCT 22 (28)
T ss_dssp CTTCCTTSCCCCB
T ss_pred ccCcccCCCcccc
Confidence 3677666666544
No 7
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.16 E-value=4.4e+02 Score=20.97 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=30.4
Q ss_pred HhhccchHHHHHHHHHHHHHHHcCCCCCceehhHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 024089 164 AIGKLPVWFLMAYFFVAYLGVVRRKEWPHFFRFHVVMGMLLEIALQVVGTASTWLPYGIYW 224 (272)
Q Consensus 164 ~~~slP~~~~liiFf~LyL~VVRN~~is~FVRFNaMQAILLdI~L~l~~li~~~lP~~~g~ 224 (272)
+++++..++.-++|+++|+=+-|+-=...|-|=. --..-+.+.++.+...++.+.+-|
T Consensus 64 ~iR~~H~~gas~~~~~~~lHm~r~~~~~sy~~~~---~w~~G~~l~~l~m~~af~GY~Lpw 121 (246)
T d1ppjc2 64 IIRYMHANGASMFFICLYMHVGRGLYYGSYTFLE---TWNIGVILLLTVMATAFMGYVLPW 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGSHH---HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcchhHhHHHHHHHHHHHHHHHHHHhcCccchH---HHHHHHHHHHHHHHHHHeeccCCC
Confidence 4455666776777888888877763222221111 134445555555555554444333
No 8
>d1vs6z1 d.325.1.2 (Z:1-70) Ribosomal protein L31p {Escherichia coli [TaxId: 562]}
Probab=2.76 E-value=2.9e+02 Score=18.23 Aligned_cols=18 Identities=22% Similarity=0.587 Sum_probs=14.5
Q ss_pred ccccccccCccccCCCCc
Q 024089 65 LHLSAASTPLLSGEQGSL 82 (272)
Q Consensus 65 ~~~~~~s~~~~~~~~~~~ 82 (272)
.+.++.|=|++||+|..+
T Consensus 34 vdi~s~~HPfyTG~q~~~ 51 (70)
T d1vs6z1 34 LDVCSKCHPFFTGKQRDV 51 (70)
T ss_dssp CBCCSSSCCBCCCCCTTT
T ss_pred EEeCCCCCCcCcCCEEEe
Confidence 477889999999988643
No 9
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.59 E-value=9e+02 Score=19.22 Aligned_cols=56 Identities=11% Similarity=0.075 Sum_probs=30.7
Q ss_pred HhhccchHHHHHHHHHHHHHHHcCCCCCcee--h-hHHHHHHHHHHHHHHHHHHHhhch
Q 024089 164 AIGKLPVWFLMAYFFVAYLGVVRRKEWPHFF--R-FHVVMGMLLEIALQVVGTASTWLP 219 (272)
Q Consensus 164 ~~~slP~~~~liiFf~LyL~VVRN~~is~FV--R-FNaMQAILLdI~L~l~~li~~~lP 219 (272)
+++++..++.=++|+.+|+=+.|+-=...|- | ++=+-++++-++.+..++.--.+|
T Consensus 77 ~iR~~H~~ga~~~~~~~~lH~~r~~~~gsy~~pre~~W~~Gv~l~~l~~~~af~GY~Lp 135 (261)
T d3cx5c2 77 ILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCV 135 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHHhccccCccchhHHhhHHHHHHHHHHHHhhhhcC
Confidence 4455666777777888888888873211121 2 334445555555554444444444
No 10
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.49 E-value=69 Score=22.47 Aligned_cols=20 Identities=30% Similarity=0.155 Sum_probs=16.2
Q ss_pred CcccCcchhhHHHhhccCCC
Q 024089 253 GMYADLPFFCDAACIQIPYE 272 (272)
Q Consensus 253 G~ya~IP~ISeAA~~Qv~~~ 272 (272)
-+.-+||-|-.||+-|-||+
T Consensus 45 eKkEki~wikkaaedqkrye 64 (84)
T d1l8ya_ 45 EKKEKLMWIKKAAEDQKRYE 64 (84)
T ss_dssp GGGHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 44556999999999998874
Done!