BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024090
(272 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P55580|Y4NH_RHISN Uncharacterized protein y4nH OS=Rhizobium sp. (strain NGR234)
GN=NGR_a02340 PE=4 SV=1
Length = 117
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLR 64
I L AA + IG +L K G LPP + + +V G + LL +
Sbjct: 6 IILVFAAGLNSCIGNILLKWGRASLPPSAGLADTF----LTPGFVGGVVFYGINVLLFAK 61
Query: 65 ALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119
AL VSV P+ +G G A+L I SH++ E + W+G+ L +G I + GG
Sbjct: 62 ALDSLEVSVAYPILAGSGFAMLIIASHYFFGEPFHLHKWIGVALVLVGIIFLARGG 117
>sp|A8FRQ9|ARNE_SHESH Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Shewanella sediminis (strain HAW-EB3)
GN=arnE PE=3 SV=1
Length = 120
Score = 38.9 bits (89), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGA 117
GA+ L LS VS+ P+ I+ + SH+ E ++ W+GITL +G I + A
Sbjct: 55 GAMTWLGVLSVWDVSMAYPLLSINFVIMLLLSHYVFNEPISVRQWIGITLIMLGVIFL-A 113
Query: 118 GGEE 121
GGE+
Sbjct: 114 GGEQ 117
>sp|Q91WC7|NPAL2_MOUSE NIPA-like protein 2 OS=Mus musculus GN=Nipal2 PE=2 SV=1
Length = 383
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 40 RAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC----GLAILSIFSHFYLKE 95
+ Y + W+ G L+ G A AP+++I P+ GC G AI+S+ +LKE
Sbjct: 82 KPYFKSVLWLSGVLLTALGETGNFAAYGVAPITLIAPL-GCMSVTGSAIISVL---FLKE 137
Query: 96 VMNAVDWMGITLAGIGT 112
+ A D +G+TLA GT
Sbjct: 138 NLRASDLLGMTLAFAGT 154
>sp|Q0D2K0|NIPA4_HUMAN Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3
Length = 466
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 42 YAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVD 101
Y + W GFL G + A + AP +V+ P+ + I +I S ++L+E +N +
Sbjct: 161 YLKDAMWWAGFLTMAAGEVANFGAYAFAPATVVTPLGALSVLISAILSSYFLRESLNLLG 220
Query: 102 WMG--ITLAGIGTIGVGAGGEEQ 122
+G I +AG + + A EE+
Sbjct: 221 KLGCVICVAGSTVMVIHAPEEEK 243
>sp|B4ETM0|ARNE_PROMH Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Proteus mirabilis (strain HI4320)
GN=arnE PE=3 SV=1
Length = 113
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113
FG L LR L P+S+ P+ ++++ F KE +N W+GI +G +
Sbjct: 51 FGMLFWLRLLQILPLSIAYPMLSINFIVVTLIGQFIYKETVNVKHWVGIASIMLGIV 107
>sp|Q3KCB8|ARNE_PSEPF Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Pseudomonas fluorescens (strain Pf0-1)
GN=arnE PE=3 SV=1
Length = 114
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITL--AGIGTIG 114
G L+ L L + PVSV P+ I+++ + F KE ++ W G+ L G+ +G
Sbjct: 53 GLLVWLLVLQRLPVSVAYPMLSLNFVIITLIARFVFKEPVDVQHWFGVLLVIGGVALLG 111
>sp|Q6P499|NPAL3_HUMAN NIPA-like protein 3 OS=Homo sapiens GN=NIPAL3 PE=1 SV=1
Length = 406
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEV 96
K RAY K W +G + + G L + + + AP+S+I P+S + +I ++KE
Sbjct: 65 KDPRAYFKTKTWWLGLFLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEK 124
Query: 97 MNAVDWM 103
D++
Sbjct: 125 WKPKDFL 131
>sp|Q5RD30|NPAL3_PONAB NIPA-like protein 3 OS=Pongo abelii GN=NIPAL3 PE=2 SV=1
Length = 406
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEV 96
K RAY K W +G + + G L + + + AP+S+I P+S + +I ++KE
Sbjct: 65 KDPRAYFKTKTWWLGLFLMLLGELGVFASYAFAPLSLIVPLSAVSVIASAIIGIIFIKEK 124
Query: 97 MNAVDWM 103
D++
Sbjct: 125 WKPKDFL 131
>sp|Q9Y238|DLEC1_HUMAN Deleted in lung and esophageal cancer protein 1 OS=Homo sapiens
GN=DLEC1 PE=2 SV=2
Length = 1755
Score = 32.3 bits (72), Expect = 4.0, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 60 LLMLRALSQAPVSVIQPVSGCGLAILS--IFSHFYLKEV---------MNAVDWMGITLA 108
L+ L+A PV + PV CG ++ + F K V M W ++
Sbjct: 465 LIPLQARRPPPVLTLSPVLDCGYCLIGGVKMTRFICKNVGFSVGRFCIMPKTSWPPLSFK 524
Query: 109 GIGTIGVGAGGEEQEPSSI--SIFQL-PWLAFVVSILF 143
I T+G EQ P I S+F+L P A +V +LF
Sbjct: 525 AIATVGF----VEQPPFGILPSVFELAPGHAILVEVLF 558
>sp|Q9H841|NPAL2_HUMAN NIPA-like protein 2 OS=Homo sapiens GN=NIPAL2 PE=2 SV=1
Length = 368
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 40 RAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQP---VSGCGLAILSIFSHFYLKEV 96
R Y + W G L+ G A AP+++I P VS G AI+S+ +LK+
Sbjct: 82 RPYFKSVLWWGGVLLMAVGETGNFAAYGFAPITLIAPLGCVSVTGSAIISVT---FLKDN 138
Query: 97 MNAVDWMGITLAGIGT 112
+ A D +G TLA GT
Sbjct: 139 LRASDLLGTTLAFAGT 154
>sp|C4K4T7|ARNE_HAMD5 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase
subunit ArnE OS=Hamiltonella defensa subsp.
Acyrthosiphon pisum (strain 5AT) GN=arnE PE=3 SV=1
Length = 111
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 70 PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118
P+S P L ++++ HF+ KE + W+GI + +G + +G G
Sbjct: 62 PLSQAYPFLSINLILVTLSGHFFFKEKVTLQHWLGIGIMMVGILLLGQG 110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,590,598
Number of Sequences: 539616
Number of extensions: 3798188
Number of successful extensions: 11503
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 11455
Number of HSP's gapped (non-prelim): 62
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)