Query 024090
Match_columns 272
No_of_seqs 133 out of 429
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05653 Mg_trans_NIPA: Magnes 99.9 8.1E-25 1.7E-29 203.4 14.1 261 2-271 6-279 (300)
2 KOG2922 Uncharacterized conser 99.4 5.1E-13 1.1E-17 124.0 5.2 250 4-262 22-284 (335)
3 TIGR03340 phn_DUF6 phosphonate 99.3 8E-10 1.7E-14 101.0 21.1 243 4-260 2-265 (281)
4 PRK15430 putative chlorampheni 99.1 5.3E-08 1.2E-12 89.8 26.4 238 2-261 7-268 (296)
5 PRK02971 4-amino-4-deoxy-L-ara 99.0 1.2E-08 2.6E-13 84.2 14.1 118 3-120 2-125 (129)
6 TIGR00950 2A78 Carboxylate/Ami 99.0 2.6E-07 5.6E-12 82.4 23.2 196 49-261 51-247 (260)
7 PRK11453 O-acetylserine/cystei 99.0 4.9E-07 1.1E-11 83.5 24.8 248 5-261 6-270 (299)
8 PRK11689 aromatic amino acid e 98.9 9.2E-07 2E-11 81.6 24.4 242 4-261 5-270 (295)
9 PRK15051 4-amino-4-deoxy-L-ara 98.8 1.5E-07 3.3E-12 75.6 12.5 104 5-116 3-108 (111)
10 PLN00411 nodulin MtN21 family 98.7 1.4E-05 3E-10 76.4 26.6 203 58-268 91-319 (358)
11 TIGR00688 rarD rarD protein. T 98.7 1.2E-05 2.6E-10 72.3 24.4 224 4-253 3-255 (256)
12 PRK11272 putative DMT superfam 98.7 4.9E-06 1.1E-10 76.5 21.5 188 50-260 74-267 (292)
13 PF13536 EmrE: Multidrug resis 98.6 2.9E-07 6.3E-12 73.4 9.9 68 51-119 41-108 (113)
14 PRK10532 threonine and homoser 98.6 5.8E-05 1.3E-09 69.5 24.7 232 3-261 12-264 (293)
15 PF10639 UPF0546: Uncharacteri 98.6 3.7E-07 8.1E-12 73.8 8.8 103 12-114 5-111 (113)
16 TIGR00776 RhaT RhaT L-rhamnose 98.5 2.1E-05 4.5E-10 72.8 21.3 114 4-118 2-137 (290)
17 COG2510 Predicted membrane pro 98.4 1.7E-06 3.7E-11 71.3 9.4 116 1-116 1-138 (140)
18 TIGR00817 tpt Tpt phosphate/ph 98.4 3.7E-05 8.1E-10 70.8 18.0 66 50-116 71-136 (302)
19 COG0697 RhaT Permeases of the 98.3 0.00021 4.7E-09 63.5 21.3 192 50-261 75-270 (292)
20 PTZ00343 triose or hexose phos 98.1 0.00066 1.4E-08 64.5 20.6 59 58-116 127-185 (350)
21 PRK10452 multidrug efflux syst 98.1 8.7E-05 1.9E-09 60.6 12.5 98 5-116 4-102 (120)
22 PF04142 Nuc_sug_transp: Nucle 98.0 0.0024 5.2E-08 58.0 20.7 204 48-260 20-235 (244)
23 PF00893 Multi_Drug_Res: Small 97.9 0.00012 2.6E-09 56.9 9.3 87 7-108 5-93 (93)
24 PRK10532 threonine and homoser 97.8 0.00037 8E-09 64.2 13.3 114 3-116 148-280 (293)
25 PRK09541 emrE multidrug efflux 97.8 0.0005 1.1E-08 55.3 12.3 96 6-116 5-102 (110)
26 PF06027 DUF914: Eukaryotic pr 97.7 0.006 1.3E-07 58.0 19.7 74 43-116 75-150 (334)
27 TIGR00950 2A78 Carboxylate/Ami 97.7 0.00074 1.6E-08 60.1 12.3 111 2-112 127-259 (260)
28 TIGR03340 phn_DUF6 phosphonate 97.6 0.0006 1.3E-08 62.3 10.3 111 4-114 145-280 (281)
29 PRK11689 aromatic amino acid e 97.5 0.0017 3.7E-08 59.8 13.1 112 3-115 156-285 (295)
30 COG2076 EmrE Membrane transpor 97.5 0.002 4.2E-08 51.6 11.4 70 46-115 31-101 (106)
31 PRK11431 multidrug efflux syst 97.5 0.0023 4.9E-08 51.1 11.3 92 9-115 7-100 (105)
32 PRK10650 multidrug efflux syst 97.5 0.0031 6.6E-08 50.7 12.1 97 4-115 8-106 (109)
33 PF00892 EamA: EamA-like trans 97.4 0.00035 7.5E-09 54.5 6.2 67 49-115 58-124 (126)
34 PRK11453 O-acetylserine/cystei 97.4 0.0046 1E-07 57.0 14.0 114 3-116 143-286 (299)
35 PRK11272 putative DMT superfam 97.4 0.0038 8.3E-08 57.4 13.4 114 3-116 150-284 (292)
36 COG2962 RarD Predicted permeas 97.4 0.059 1.3E-06 50.3 20.9 200 37-265 60-270 (293)
37 PF08449 UAA: UAA transporter 97.3 0.083 1.8E-06 48.9 21.3 70 47-116 66-135 (303)
38 PLN00411 nodulin MtN21 family 97.3 0.0045 9.9E-08 59.3 12.5 114 3-116 189-327 (358)
39 COG5006 rhtA Threonine/homoser 96.8 0.24 5.2E-06 45.7 18.7 173 62-261 88-265 (292)
40 COG0697 RhaT Permeases of the 96.7 0.031 6.7E-07 49.6 12.2 114 2-116 153-286 (292)
41 PRK15430 putative chlorampheni 96.6 0.038 8.3E-07 50.9 12.5 110 6-115 152-283 (296)
42 TIGR00776 RhaT RhaT L-rhamnose 95.6 0.18 3.8E-06 46.6 11.5 112 2-116 151-287 (290)
43 COG5006 rhtA Threonine/homoser 95.5 0.19 4.2E-06 46.3 11.2 114 3-116 148-281 (292)
44 TIGR00817 tpt Tpt phosphate/ph 94.9 0.3 6.5E-06 44.8 10.9 114 3-116 145-292 (302)
45 KOG4510 Permease of the drug/m 94.5 0.15 3.2E-06 47.5 7.4 111 4-116 39-168 (346)
46 PF06800 Sugar_transport: Suga 93.8 5.6 0.00012 36.9 18.6 64 53-116 53-121 (269)
47 KOG3912 Predicted integral mem 93.8 0.17 3.8E-06 47.3 6.5 108 9-116 47-157 (372)
48 COG2510 Predicted membrane pro 92.9 0.48 1E-05 39.5 7.1 56 212-268 74-130 (140)
49 PF06027 DUF914: Eukaryotic pr 91.4 1.4 3E-05 42.1 9.4 115 2-116 167-304 (334)
50 PRK15051 4-amino-4-deoxy-L-ara 90.5 5.2 0.00011 31.8 10.6 47 214-261 46-92 (111)
51 KOG4831 Unnamed protein [Funct 86.4 3 6.5E-05 33.7 6.5 100 14-114 14-122 (125)
52 PF00892 EamA: EamA-like trans 86.1 1.5 3.2E-05 33.6 4.7 47 214-261 63-109 (126)
53 PF13536 EmrE: Multidrug resis 85.0 5.4 0.00012 31.3 7.5 46 216-263 46-91 (113)
54 PTZ00343 triose or hexose phos 83.7 23 0.00049 33.6 12.4 37 79-115 310-346 (350)
55 PF03151 TPT: Triose-phosphate 83.1 22 0.00049 28.6 12.0 111 4-114 1-150 (153)
56 TIGR00803 nst UDP-galactose tr 82.4 6.9 0.00015 34.2 7.8 111 3-113 85-220 (222)
57 KOG2765 Predicted membrane pro 80.7 4.7 0.0001 39.3 6.4 71 49-119 160-233 (416)
58 KOG2234 Predicted UDP-galactos 79.4 62 0.0013 31.2 20.7 65 52-116 99-163 (345)
59 PRK02971 4-amino-4-deoxy-L-ara 73.3 38 0.00082 27.7 9.1 60 208-268 51-113 (129)
60 PF00893 Multi_Drug_Res: Small 71.6 14 0.0003 28.4 5.8 49 212-261 36-85 (93)
61 PRK13499 rhamnose-proton sympo 68.3 1.2E+02 0.0025 29.3 21.0 113 2-116 6-152 (345)
62 PF05653 Mg_trans_NIPA: Magnes 67.1 40 0.00086 31.6 9.0 101 169-270 7-115 (300)
63 PF02694 UPF0060: Uncharacteri 64.1 12 0.00026 30.0 4.2 64 51-116 39-102 (107)
64 PRK02237 hypothetical protein; 63.8 14 0.0003 29.8 4.4 34 82-115 70-103 (109)
65 COG3169 Uncharacterized protei 60.6 20 0.00042 28.7 4.7 60 53-114 46-112 (116)
66 COG1742 Uncharacterized conser 56.7 13 0.00028 29.8 3.1 73 42-116 28-103 (109)
67 PF04657 DUF606: Protein of un 55.3 51 0.0011 27.2 6.7 68 46-113 64-137 (138)
68 PF08449 UAA: UAA transporter 54.3 1.8E+02 0.0038 26.7 12.7 112 3-115 154-295 (303)
69 TIGR00688 rarD rarD protein. T 53.1 1.4E+02 0.0029 26.4 9.6 85 7-92 150-255 (256)
70 PF06800 Sugar_transport: Suga 51.9 43 0.00092 31.2 6.2 60 53-112 203-266 (269)
71 TIGR00803 nst UDP-galactose tr 51.4 1.6E+02 0.0035 25.5 14.5 24 238-261 184-207 (222)
72 KOG1580 UDP-galactose transpor 44.9 29 0.00063 32.1 3.9 68 44-114 236-310 (337)
73 COG3859 Predicted membrane pro 44.8 2.2E+02 0.0047 25.0 9.0 87 169-264 51-146 (185)
74 PRK09541 emrE multidrug efflux 41.7 1.5E+02 0.0033 23.6 7.2 49 212-261 37-86 (110)
75 PF04342 DUF486: Protein of un 41.1 32 0.00069 27.7 3.1 61 51-113 37-104 (108)
76 KOG1441 Glucose-6-phosphate/ph 40.4 5.3 0.00011 37.9 -1.6 61 53-113 91-151 (316)
77 PRK10650 multidrug efflux syst 36.4 2.1E+02 0.0047 22.7 7.3 49 212-261 42-91 (109)
78 COG2076 EmrE Membrane transpor 32.8 2.1E+02 0.0046 22.9 6.6 48 213-261 38-86 (106)
79 PRK11431 multidrug efflux syst 32.8 2.5E+02 0.0054 22.2 7.3 49 212-261 36-85 (105)
80 PRK10452 multidrug efflux syst 32.5 1.9E+02 0.0041 23.5 6.5 48 212-260 37-85 (120)
81 KOG4314 Predicted carbohydrate 27.8 1.2E+02 0.0027 27.4 5.0 61 61-121 69-129 (290)
82 PRK02983 lysS lysyl-tRNA synth 27.4 9.1E+02 0.02 27.0 13.2 58 45-102 75-143 (1094)
83 TIGR03758 conj_TIGR03758 integ 25.1 94 0.002 22.8 3.1 30 221-254 3-33 (65)
84 PRK15403 multidrug efflux syst 25.0 5.7E+02 0.012 24.1 9.5 40 37-76 209-248 (413)
85 COG2962 RarD Predicted permeas 23.2 3.7E+02 0.0081 25.4 7.4 60 56-115 222-281 (293)
86 PF09515 Thia_YuaJ: Thiamine t 23.0 4.5E+02 0.0098 22.7 7.6 88 169-262 42-140 (177)
No 1
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=99.92 E-value=8.1e-25 Score=203.40 Aligned_cols=261 Identities=19% Similarity=0.280 Sum_probs=180.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch-HHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhh
Q 024090 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGC 80 (272)
Q Consensus 2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~-~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~ 80 (272)
.+|+.+|++++++++.|.++||++..|.++.+.+. +...+|+|||.||.|+.++.+|.++|+.||+++|.++|||+++.
T Consensus 6 ~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~ 85 (300)
T PF05653_consen 6 YIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPLGAL 85 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhh
Confidence 57999999999999999999999999887644322 34568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc-cCCCCCCCCccchhhH-----HHHHHHHHHHHHHHHHHHHHhh
Q 024090 81 GLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSISIFQL-----PWLAFVVSILFVLLNGWLRICK 154 (272)
Q Consensus 81 ~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 154 (272)
++++..+++++++|||++++||.|+.+++.|..++. .++++++..+.++... ..+...................
T Consensus 86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~ 165 (300)
T PF05653_consen 86 SLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIFFIKP 165 (300)
T ss_pred hhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999998665 3333333222222111 1111111111111101111111
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc---cCcccchhhHHHH---HHHHHHHHHHHHHHhhhcc
Q 024090 155 HQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE---QGFPTMLVPVCIS---ISICCSGTGFYYQTRGLKH 228 (272)
Q Consensus 155 ~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~---~g~~~l~~~~~~~---~~v~~~~~g~~l~q~A~q~ 228 (272)
|.+ +.+-..+...+++..+.+-..+|.....+. +|.....+|..|. .++.+.+...++.|+|++.
T Consensus 166 r~g---------~~~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~ 236 (300)
T PF05653_consen 166 RYG---------RRNILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKR 236 (300)
T ss_pred hhc---------ccceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 123345677777777778888887543332 2333333332222 2344566778888999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHhhhc
Q 024090 229 GRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTARFSLLLG 271 (272)
Q Consensus 229 G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~~~~~~~~~~~ 271 (272)
.++..+.+..-+.=-..++.-|...+.|..+.++...+....|
T Consensus 237 fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G 279 (300)
T PF05653_consen 237 FDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCG 279 (300)
T ss_pred ccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHH
Confidence 9965333434455667788899999999888887766665544
No 2
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=5.1e-13 Score=123.98 Aligned_cols=250 Identities=20% Similarity=0.264 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCccc-hHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHH
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFK-LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGL 82 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~-~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l 82 (272)
+.++|+.+++.++.+..+||++..+..+.+.+ .+.=.+|++.|.||+|+..|++|..+++.|++++|.++|.|++++++
T Consensus 22 G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsv 101 (335)
T KOG2922|consen 22 GLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSV 101 (335)
T ss_pred eeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHH
Confidence 56789999999999999999999876542211 11113578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc-cCCCCCCCCccch-hh----HHHHHHHHHHHHHHHHHHHHHhhhh
Q 024090 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG-AGGEEQEPSSISI-FQ----LPWLAFVVSILFVLLNGWLRICKHQ 156 (272)
Q Consensus 83 ~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~-~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (272)
++.++++++++||+++..+.+|..++++|..++. -++++++..+..+ ++ +..+.-........ +....--+.
T Consensus 102 i~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fliy~~~iil~~--~il~~~~~p 179 (335)
T KOG2922|consen 102 IISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFLVYVIIIILIV--LILIFFYAP 179 (335)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHHHHHHHHHHHH--HHHheeecc
Confidence 9999999999999999999999999999998776 3333333322211 11 11111111111110 111111111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc---cCcccchhhHHHH---HHHHHHHHHHHHHHhhhccCc
Q 024090 157 RREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE---QGFPTMLVPVCIS---ISICCSGTGFYYQTRGLKHGR 230 (272)
Q Consensus 157 ~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~---~g~~~l~~~~~~~---~~v~~~~~g~~l~q~A~q~G~ 230 (272)
|.++ ..-+.|-..++..=.++-..+|..-..+. +|...+..|..|. .++.+...-+...++|+|.=+
T Consensus 180 ~~g~-------tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fn 252 (335)
T KOG2922|consen 180 RYGQ-------TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFN 252 (335)
T ss_pred cccc-------cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111 01233444444442334444665432221 3444444443222 222333344556677888777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCCCCCCh
Q 024090 231 AIVVSTCAAVASIVTGVVAGMLALGERLPSAP 262 (272)
Q Consensus 231 ~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~~ 262 (272)
...+.+.--|.-....+..|...|-|--..+.
T Consensus 253 tslV~PiyyV~fTtl~I~as~I~Fkew~~~~~ 284 (335)
T KOG2922|consen 253 TSIVSPIYYVMFTTLVILASAILFKEWSGQDA 284 (335)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 44333333344455556777777777655443
No 3
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.28 E-value=8e-10 Score=101.02 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc--c--hH-HH--HHH-------hh--cHhHH----HHHHHHHHHHHHHH
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF--K--LK-VI--RAY-------AV--NKAWV----IGFLMDIFGALLML 63 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~--~--~~-~~--~~l-------lr--~p~W~----~G~~~~~~G~~~~~ 63 (272)
+.++.+.++++++..+.++||..++.+.... . .. .+ ... .+ ++.|+ .+.......+.+..
T Consensus 2 ~~~~~~~aa~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 2 ALTLVVFSALMHAGWNLMAKSHADKEPDFLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999987766443111 0 00 00 001 11 11222 34445667778889
Q ss_pred HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHHHHHH
Q 024090 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILF 143 (272)
Q Consensus 64 ~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (272)
.|+...|.+.++|+..++.+++.+++..++|||+++++|.|+.+...|+..+..++.++. ...... ..+..+...
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~--~~~g~~---~~l~aal~~ 156 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQH--RRKAYA---WALAAALGT 156 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccccc--chhHHH---HHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999987653221111 111111 112111111
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhccCcccchhhHHHHHHHHHHHHHHHHH
Q 024090 144 VLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESG-ILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGFYYQ 222 (272)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG-~~fG~~A~l~K~~~~~~~~g~~~l~~~~~~~~~v~~~~~g~~l~ 222 (272)
+ .+....|+...+..... .......++...+ +.+...... + +..+............+...+.+..++.++
T Consensus 157 a---~~~i~~k~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~s~l~~~l~ 228 (281)
T TIGR03340 157 A---IYSLSDKAAALGVPAFY-SALGYLGIGFLAMGWPFLLLYLK-R---HGRSMFPYARQILPSATLGGLMIGGAYALV 228 (281)
T ss_pred H---Hhhhhccccccchhccc-ccHHHHHHHHHHHHHHHHHHHHH-H---hccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22223333211100000 0000111121111 222221111 0 000000000011112334456677889999
Q ss_pred HhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 024090 223 TRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS 260 (272)
Q Consensus 223 q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~ 260 (272)
.+++|..++..+.+ ....+|++++.+|+.+|||+...
T Consensus 229 ~~al~~~~a~~~~~-~~~l~pv~a~l~g~~~lgE~~~~ 265 (281)
T TIGR03340 229 LWAMTRLPVATVVA-LRNTSIVFAVVLGIWFLNERWYL 265 (281)
T ss_pred HHHHhhCCceEEEe-ecccHHHHHHHHHHHHhCCCccH
Confidence 99999988543333 24578999999999999999864
No 4
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.15 E-value=5.3e-08 Score=89.81 Aligned_cols=238 Identities=13% Similarity=0.042 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-chH-------------------HHHHHhhcHhHH----HHHHHHHH
Q 024090 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK-------------------VIRAYAVNKAWV----IGFLMDIF 57 (272)
Q Consensus 2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~-------------------~~~~llr~p~W~----~G~~~~~~ 57 (272)
..++.+.++++++++.....-|.. .+.++... -.| ..++..++++++ .|......
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGG 85 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 457888999999999888888764 34332221 000 000111233332 55666777
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHH
Q 024090 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAF 137 (272)
Q Consensus 58 G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~ 137 (272)
.+.+...++...|.+.+.-+..+..+++.+++..++|||+++++|.|+.+..+|+.++..+. ++. . ...+
T Consensus 86 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~-~~~----~-----~~~l 155 (296)
T PRK15430 86 NWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTF-GSL----P-----IIAL 155 (296)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc-CCc----c-----HHHH
Confidence 88999999999999999999999999999999999999999999999999999998765321 110 1 1112
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcccchhhHHHHHHHHHHHH
Q 024090 138 VVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGT 217 (272)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~~~~~~v~~~~~ 217 (272)
..+...+ .+....||...... ........+-...+..+... ... ................++.....+..
T Consensus 156 ~aa~~~a---~~~i~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~g~~t~i 225 (296)
T PRK15430 156 GLAFSFA---FYGLVRKKIAVEAQ---TGMLIETMWLLPVAAIYLFA--IAD--SSTSHMGQNPMSLNLLLIAAGIVTTV 225 (296)
T ss_pred HHHHHHH---HHHHHHHhcCCCCc---hhHHHHHHHHHHHHHHHHHH--Hcc--CCcccccCCcHHHHHHHHHHHHHHHH
Confidence 2111111 22223333221100 00011111111122211100 000 00000000001011112222335668
Q ss_pred HHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 218 GFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 218 g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
++++..+++|.-++..+.. .+..||++++.+|..++||+.+..
T Consensus 226 ~~~~~~~a~~~~~a~~~s~-~~~l~Pv~a~~~g~l~l~E~~~~~ 268 (296)
T PRK15430 226 PLLCFTAAATRLRLSTLGF-FQYIGPTLMFLLAVTFYGEKPGAD 268 (296)
T ss_pred HHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHHHHHHcCCCCHH
Confidence 8999999999998655444 357999999999999999998654
No 5
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.01 E-value=1.2e-08 Score=84.23 Aligned_cols=118 Identities=18% Similarity=0.152 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchH--HHHHHhhcH--hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKLK--VIRAYAVNK--AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS 78 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~--~~~~llr~p--~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~ 78 (272)
.+.++.+.+.++++.|+.+-|+++++.++.+.+.. .......+| .-+.|+.+++.++.+-..+++..|++...|+.
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~ 81 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLL 81 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 36788899999999999999999998765432221 233456677 55699999999999999999999999999999
Q ss_pred hhHHHHHHHHHHH--HhccccchhhHHHHHHHHHHHHhhccCCC
Q 024090 79 GCGLAILSIFSHF--YLKEVMNAVDWMGITLAGIGTIGVGAGGE 120 (272)
Q Consensus 79 ~~~l~~~~~lsa~--~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~ 120 (272)
.....+....+.. ++||++|.++|+|+.++++|++.+..+++
T Consensus 82 sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 82 SLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 8887777777775 89999999999999999999998875444
No 6
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.99 E-value=2.6e-07 Score=82.45 Aligned_cols=196 Identities=16% Similarity=0.097 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccc
Q 024090 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS 128 (272)
Q Consensus 49 ~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~ 128 (272)
..|.......+.+...|+...|.+.+.++..+..+++.+++..++|||+++++|.|+.+..+|+..+...++.+. .
T Consensus 51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~--~-- 126 (260)
T TIGR00950 51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSI--N-- 126 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccc--c--
Confidence 356666778888899999999999999999999999999999999999999999999999999988764332211 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcccchhh-HH
Q 024090 129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVP-VC 207 (272)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~-~~ 207 (272)
.......+..+.... ......|+..+... +.......+....|..+-..-...+ +. +... ...+. ..
T Consensus 127 -~~G~~~~l~a~~~~a---~~~~~~k~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~---~~-~~~~-~~~~~~~~ 194 (260)
T TIGR00950 127 -PAGLLLGLGSGISFA---LGTVLYKRLVKKEG---PELLQFTGWVLLLGALLLLPFAWFL---GP-NPQA-LSLQWGAL 194 (260)
T ss_pred -HHHHHHHHHHHHHHH---HHHHHHhHHhhcCC---chHHHHHHHHHHHHHHHHHHHHHhc---CC-CCCc-chHHHHHH
Confidence 111111222222111 12223333221100 0000110011122211111111110 00 0001 11111 12
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 208 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 208 ~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
.+..+..+..++.++.++.|..++..+.. ....+|+++..+++.++||+.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~a~~~~~~~~~s~-~~~~~pv~~~ll~~~~~~E~~~~~ 247 (260)
T TIGR00950 195 LYLGLIGTALAYFLWNKGLTLVDPSAASI-LALAEPLVALLLGLLILGETLSLP 247 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33444456788899999999988655554 457999999999999999998643
No 7
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.97 E-value=4.9e-07 Score=83.46 Aligned_cols=248 Identities=16% Similarity=0.146 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCcc-chHH------HHHHhhcH--hH--HH--HHHHHHHHHHHHHHHHhh-cC
Q 024090 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IRAYAVNK--AW--VI--GFLMDIFGALLMLRALSQ-AP 70 (272)
Q Consensus 5 v~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~~------~~~llr~p--~W--~~--G~~~~~~G~~~~~~AL~~-~p 70 (272)
.+++++++++.+.....-|.+.++.++... ..|. +.-+.+++ +| +. |+......+.+.+.++.. .|
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 85 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFGQFAFLFCAINFGMP 85 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356788889999999888887766554331 1121 11122221 11 22 222223333455667776 47
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 024090 71 VSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWL 150 (272)
Q Consensus 71 lsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (272)
.+...-+..+..+++.+++..++|||+++++|+++.+..+|+..+..++.+..+.+ ..-...++..+...+ .+.
T Consensus 86 a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~---~~G~~l~l~aal~~a---~~~ 159 (299)
T PRK11453 86 AGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVA---MLGFMLTLAAAFSWA---CGN 159 (299)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchh---HHHHHHHHHHHHHHH---HHH
Confidence 77777777888889999999999999999999999999999987764322111111 101112222222222 222
Q ss_pred HHhhhhhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhHhhhc--cCcccchhhHHHHHHHHHHHHHHHHHHhhhc
Q 024090 151 RICKHQRREQEMIEFEVVEEIIY-GLESGILFGMASVISKLGFVFLE--QGFPTMLVPVCISISICCSGTGFYYQTRGLK 227 (272)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~ra~ll-g~aaG~~fG~~A~l~K~~~~~~~--~g~~~l~~~~~~~~~v~~~~~g~~l~q~A~q 227 (272)
...|+..+.. +.+....-..+ ...+.+.+...+.....-.+..+ ..+..-.-....|..+..++.+++++.+++|
T Consensus 160 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~ 237 (299)
T PRK11453 160 IFNKKIMSHS--TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLG 237 (299)
T ss_pred HHHHHHhccc--CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333322110 00000111111 22222333322221110000000 0000001112244557788899999999998
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 228 HGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 228 ~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
.-++..+.. ....||+++..+|+.++||+....
T Consensus 238 ~~~a~~~s~-~~~l~Pv~a~~~~~l~lgE~~~~~ 270 (299)
T PRK11453 238 RYETWRVAP-LSLLVPVVGLASAALLLDERLTGL 270 (299)
T ss_pred hCCHHHHHH-HHHHHHHHHHHHHHHHhCCCccHH
Confidence 777543333 346899999999999999998653
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.91 E-value=9.2e-07 Score=81.56 Aligned_cols=242 Identities=14% Similarity=0.077 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-chHH------HHHH-----hhcHhH---HHHHHHHHHHHHHHHHHHhh
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLKV------IRAY-----AVNKAW---VIGFLMDIFGALLMLRALSQ 68 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~~------~~~l-----lr~p~W---~~G~~~~~~G~~~~~~AL~~ 68 (272)
+.++++.+.++.+......|.+..+.|+... ..|. +.-. .|+..| ..|.........++..++..
T Consensus 5 ~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 5 ATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSLGY 84 (295)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4667888888989888899988877765432 1111 1111 111111 22222222333344455543
Q ss_pred ----cCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCC----Cc-cchhhHHHHHHHH
Q 024090 69 ----APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEP----SS-ISIFQLPWLAFVV 139 (272)
Q Consensus 69 ----~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~----~~-~~~~~~~~~~~~~ 139 (272)
.|...+.-+..+..+++.+++..++|||+++++|.|+.+...|+.++..++.+... +. .+...-....+..
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 164 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIG 164 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHH
Confidence 34444444556677899999999999999999999999999999877643221100 00 0000000112222
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcccchhhHHHHHHHHHHHHHH
Q 024090 140 SILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGTGF 219 (272)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~~~~~~v~~~~~g~ 219 (272)
+...+ .+....||.+++.. . ..... ...++.+-...... +.....+..-.-....+.. ..+..++
T Consensus 165 a~~~A---~~~v~~k~~~~~~~-----~-~~~~~-~~~~~~l~~~~~~~----~~~~~~~~~~~~~~l~~~~-~~t~~~~ 229 (295)
T PRK11689 165 AFIWA---AYCNVTRKYARGKN-----G-ITLFF-ILTALALWIKYFLS----PQPAMVFSLPAIIKLLLAA-AAMGFGY 229 (295)
T ss_pred HHHHH---HHHHHHhhccCCCC-----c-hhHHH-HHHHHHHHHHHHHh----cCccccCCHHHHHHHHHHH-HHHHHHH
Confidence 11111 22334444332211 0 11111 11222221111110 0000011100011112232 4577789
Q ss_pred HHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 220 YYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 220 ~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
+++.+++|..++..+.. ....||++++.+|+.++||++...
T Consensus 230 ~l~~~al~~~~a~~~s~-~~~l~Pv~a~i~~~~~lgE~~~~~ 270 (295)
T PRK11689 230 AAWNVGILHGNMTLLAT-ASYFTPVLSAALAALLLSTPLSFS 270 (295)
T ss_pred HHHHHHHHccCHHHHHH-HHHhHHHHHHHHHHHHhCCCCcHH
Confidence 99999999998665444 457999999999999999998653
No 9
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.78 E-value=1.5e-07 Score=75.59 Aligned_cols=104 Identities=15% Similarity=0.166 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhHHH--HHHHHHHHHHHHHHHHhhcCchhhhhhhhhHH
Q 024090 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVI--GFLMDIFGALLMLRALSQAPVSVIQPVSGCGL 82 (272)
Q Consensus 5 v~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W~~--G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l 82 (272)
.++-+++.++...|+.+.|++.+..|+...+ .++..+. ++..++..+.+...+++..|+++.+|+..++.
T Consensus 3 ~~~l~~ai~~ev~g~~~lK~s~~~~~~~~~~--------~~~l~~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~ 74 (111)
T PRK15051 3 WLTLVFASLLSVAGQLCQKQATRPVAIGKRR--------KHIVLWLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNF 74 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcchhh--------hHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHH
Confidence 4556677888889999999987655422111 0122233 34778889999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 83 ~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
+++.+++.+++|||+|.++|+|+.+++.|+++++
T Consensus 75 v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 75 VWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998875
No 10
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.74 E-value=1.4e-05 Score=76.44 Aligned_cols=203 Identities=15% Similarity=0.137 Sum_probs=111.2
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHH------hccccchhhHHHHHHHHHHHHhhcc-CCCCC--------
Q 024090 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFY------LKEVMNAVDWMGITLAGIGTIGVGA-GGEEQ-------- 122 (272)
Q Consensus 58 G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~------l~~rl~~~ew~gv~l~~~Gl~~l~~-~~~~~-------- 122 (272)
-+.++..++..-|-+..-=+..+..+++.++++.+ +|||+++++|+|+.++..|+.++.. .++..
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 33467888899999888888899999999999999 6999999999999999999986542 22110
Q ss_pred ------CC-CccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 024090 123 ------EP-SSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFL 195 (272)
Q Consensus 123 ------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~ 195 (272)
.+ ...+...+............+...+....+|..++ ++. ............++.+...+...... + .
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~-~~~~t~~~~~~~~~~~~~~~l~~~~~-~-~ 245 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPA-AFTVSFLYTVCVSIVTSMIGLVVEKN-N-P 245 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCc-HhHHHHHHHHHHHHHHHHHHHHHccC-C-c
Confidence 00 00011111111111111111111222334432211 101 01112233444444444443321100 0 0
Q ss_pred ccCcccchhh---HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-hHHHHHh
Q 024090 196 EQGFPTMLVP---VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA-PTARFSL 268 (272)
Q Consensus 196 ~~g~~~l~~~---~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~-~~~~~~~ 268 (272)
..+...++. ..+|..+. ..++++++.++.|+-++..+.. ....+|++++++|+.+|||++... ..+.++.
T Consensus 246 -~~~~~~~~~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~-~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LI 319 (358)
T PLN00411 246 -SVWIIHFDITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAI-FKPLSILIAVVMGAIFLNDSLYLGCLIGGILI 319 (358)
T ss_pred -ccceeccchHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHH-HHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 011111111 12333343 5578999999997776544333 347899999999999999998653 3344433
No 11
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.72 E-value=1.2e-05 Score=72.27 Aligned_cols=224 Identities=12% Similarity=0.085 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc---ch--H--HHH-------------HHhh---cHhHHH----HHHHHH
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF---KL--K--VIR-------------AYAV---NKAWVI----GFLMDI 56 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~---~~--~--~~~-------------~llr---~p~W~~----G~~~~~ 56 (272)
++.+.++++++.+......|. ..+.++... |. . .+. +..+ +++|+. ...+..
T Consensus 3 g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 81 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIG 81 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 678899999999999988887 333443221 10 0 000 0111 122221 222255
Q ss_pred HHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHH
Q 024090 57 FGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLA 136 (272)
Q Consensus 57 ~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~ 136 (272)
....+...|+...|.+...-+..+..+++.+++..++|||+++++|.++.+...|+..+..++.+ .. +..
T Consensus 82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~-----~~-----~~~ 151 (256)
T TIGR00688 82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGS-----LP-----WEA 151 (256)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCC-----ch-----HHH
Confidence 67788999999999999999999999999999999999999999999999999998766432111 01 112
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhc-cCcccc-hhhHHHHHHHHH
Q 024090 137 FVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLE-QGFPTM-LVPVCISISICC 214 (272)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~-~g~~~l-~~~~~~~~~v~~ 214 (272)
+..+...+ .+....||.++.. ......+...-..+........ +..+ +..... .-.+.++. .+.
T Consensus 152 l~aa~~~a---~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~-g~~ 217 (256)
T TIGR00688 152 LVLAFSFT---AYGLIRKALKNTD-------LAGFCLETLSLMPVAIYYLLQT---DFATVQQTNPFPIWLLLVLA-GLI 217 (256)
T ss_pred HHHHHHHH---HHHHHHhhcCCCC-------cchHHHHHHHHHHHHHHHHHHh---ccCcccccCchhHHHHHHHH-HHH
Confidence 22111111 2222333332211 0111122111111111111110 0000 000000 11222323 345
Q ss_pred HHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHH
Q 024090 215 SGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLA 253 (272)
Q Consensus 215 ~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~v 253 (272)
+..++++.++++|.-++..+.. ....||++++.+|..+
T Consensus 218 t~i~~~l~~~a~~~~~a~~~s~-~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 218 TGTPLLAFVIAANRLPLNLLGL-LQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHcCChHHHHH-HHHHHHHHHHHHHHHh
Confidence 7789999999999999766555 4579999999998754
No 12
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.69 E-value=4.9e-06 Score=76.53 Aligned_cols=188 Identities=16% Similarity=0.135 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHH-hhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccc
Q 024090 50 IGFLMDIFGALLMLRAL-SQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS 128 (272)
Q Consensus 50 ~G~~~~~~G~~~~~~AL-~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~ 128 (272)
.|......++.+...+. ...|.+...-+..+..+++.+++.. +|||+++++|.|+.+...|+..+..+++.+ ....+
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~-~~~~G 151 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLS-GNPWG 151 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccc-cchHH
Confidence 34444445667777887 8888888888888899999999875 799999999999999999988765332211 11111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhHhhhccCcccchhh--
Q 024090 129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLE-SGILFGMASVISKLGFVFLEQGFPTMLVP-- 205 (272)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~a-aG~~fG~~A~l~K~~~~~~~~g~~~l~~~-- 205 (272)
. +..+..+...+ ......+|..++. + .....+... ++........ . .++......++
T Consensus 152 ---~-l~~l~a~~~~a---~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~ 211 (292)
T PRK11272 152 ---A-ILILIASASWA---FGSVWSSRLPLPV----G--MMAGAAEMLAAGVVLLIASL-L------SGERLTALPTLSG 211 (292)
T ss_pred ---H-HHHHHHHHHHH---HHHHHHHhcCCCc----c--hHHHHHHHHHHHHHHHHHHH-H------cCCcccccCCHHH
Confidence 1 11222222111 1222333322111 0 111112221 1222111111 1 11111111111
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 024090 206 --VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS 260 (272)
Q Consensus 206 --~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~ 260 (272)
.-.|..+..+..++++++.+.|..++..+.. ....||+.+..+|..++||+...
T Consensus 212 ~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~-~~~l~Pi~a~i~~~~~l~E~~t~ 267 (292)
T PRK11272 212 FLALGYLAVFGSIIAISAYMYLLRNVRPALATS-YAYVNPVVAVLLGTGLGGETLSP 267 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH-HHHHHHHHHHHHHHHHcCCCCcH
Confidence 2233445567788999999999998654444 35789999999999999999754
No 13
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.63 E-value=2.9e-07 Score=73.39 Aligned_cols=68 Identities=26% Similarity=0.394 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCC
Q 024090 51 GFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (272)
Q Consensus 51 G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~ 119 (272)
|......++.+...|+.+.| ..+.++..++.+|+.+++..++|||+++++|.++.++..|++++..++
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 55555688999999999999 689999999999999999999999999999999999999999886443
No 14
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.57 E-value=5.8e-05 Score=69.55 Aligned_cols=232 Identities=17% Similarity=0.137 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-chH------HHHHH-------hhcHhH----HHHHHHHHHHHHHHHH
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-KLK------VIRAY-------AVNKAW----VIGFLMDIFGALLMLR 64 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~~------~~~~l-------lr~p~W----~~G~~~~~~G~~~~~~ 64 (272)
.++.+.+++.++.+.+...-|.+..+.|+... -.| .+.-+ .+++.| +.|.. ......+...
T Consensus 12 ~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~ 90 (293)
T PRK10532 12 LPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVS-LGGMNYLFYL 90 (293)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 57888999999999999999988876654321 001 01000 112233 45543 4556666778
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHHHHHHH
Q 024090 65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSILFV 144 (272)
Q Consensus 65 AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (272)
++...|.+..--+..+..+++.+++ +||.++ +.++.+...|+..+...+.+.... +.. -..+.+..+...+
T Consensus 91 al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~--~~~-G~ll~l~aa~~~a 161 (293)
T PRK10532 91 SIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHV--DLT-GAALALGAGACWA 161 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccC--ChH-HHHHHHHHHHHHH
Confidence 8888888876655555666666655 355544 445556667776654322221111 110 0111222221111
Q ss_pred HHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccC-cccchh--hHHHHHHHHHHHHHHHH
Q 024090 145 LLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQG-FPTMLV--PVCISISICCSGTGFYY 221 (272)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~~g-~~~l~~--~~~~~~~v~~~~~g~~l 221 (272)
......|+..++.. .... ......+++.....+. ..++ ...-.. ...+|..++.++.++.+
T Consensus 162 ---~~~v~~r~~~~~~~----~~~~-~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 162 ---IYILSGQRAGAEHG----PATV-AIGSLIAALIFVPIGA--------LQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred ---HHHHHHHHHhccCC----chHH-HHHHHHHHHHHHHHHH--------HccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22233343322110 0111 1111222222111111 1111 100011 12346777888999999
Q ss_pred HHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 222 QTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 222 ~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
+++++|.-++..+.. ....||+++..+|+.+|||+.+..
T Consensus 226 ~~~~~~~~~a~~as~-~~~l~Pv~a~l~~~l~lgE~~~~~ 264 (293)
T PRK10532 226 EMIALTRLPTRTFGT-LMSMEPALAAVSGMIFLGETLTLI 264 (293)
T ss_pred HHHHHHhcChhHHHH-HHHhHHHHHHHHHHHHhCCCCcHH
Confidence 999999998655444 357999999999999999998654
No 15
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=98.56 E-value=3.7e-07 Score=73.76 Aligned_cols=103 Identities=20% Similarity=0.322 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCcc---chHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHH
Q 024090 12 TAGNNIGKVLQKKGTVILPPLSF---KLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSI 87 (272)
Q Consensus 12 A~~~a~g~vlQ~~aa~~~~~~~~---~~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~~~~~ 87 (272)
+++-+..+-+-||+++..++... .......+++||+++.+++++..|.+..+..|+-.|+|+..|+. +++++||++
T Consensus 5 g~~WG~Tnpfik~g~~~~~~~~~~~~~~~~~~~Ll~n~~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l 84 (113)
T PF10639_consen 5 GILWGCTNPFIKRGSSGLEKVKASLQLLQEIKFLLLNPKYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTAL 84 (113)
T ss_pred hHHhcCchHHHHHHHhhcCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHH
Confidence 45567778888999876443322 13456789999999999999999999999999999999999997 999999999
Q ss_pred HHHHHhccccchhhHHHHHHHHHHHHh
Q 024090 88 FSHFYLKEVMNAVDWMGITLAGIGTIG 114 (272)
Q Consensus 88 lsa~~l~~rl~~~ew~gv~l~~~Gl~~ 114 (272)
.+.++.+|..+++.|+|..+++.|+.+
T Consensus 85 ~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 85 TGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHhcCcccchhHHHHHHHHHcCeee
Confidence 997777777788899999999998754
No 16
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.55 E-value=2.1e-05 Score=72.76 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-ch--H-----HHHHHhhc-----Hh-HHHHHHH---HHHHHHHHHHHH
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSF-KL--K-----VIRAYAVN-----KA-WVIGFLM---DIFGALLMLRAL 66 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~~--~-----~~~~llr~-----p~-W~~G~~~---~~~G~~~~~~AL 66 (272)
+++++++++++++.--+..|+-. ..+.... +. . ......|+ +. |..|+.. ...|..+++.|.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai 80 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTLGTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSM 80 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 67899999999986555555532 1111110 00 0 01111332 22 3446666 888889999999
Q ss_pred hhcCchhhhhhhh-hHHHHHHHHHHHHhccccchhh----HHHHHHHHHHHHhhccC
Q 024090 67 SQAPVSVIQPVSG-CGLAILSIFSHFYLKEVMNAVD----WMGITLAGIGTIGVGAG 118 (272)
Q Consensus 67 ~~~plsvVQPl~~-~~l~~~~~lsa~~l~~rl~~~e----w~gv~l~~~Gl~~l~~~ 118 (272)
+...+++-.|+-. ..+++..+.+..++||+.+++| +.|+.++++|.+++...
T Consensus 81 ~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 81 RYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 9999999999986 8888999999999999999999 78899999998777643
No 17
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.43 E-value=1.7e-06 Score=71.31 Aligned_cols=116 Identities=22% Similarity=0.320 Sum_probs=90.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-ccchHHH-------HHH-------------hhcHhHH-HHHHHHHHH
Q 024090 1 MWELICLTLAATAGNNIGKVLQKKGTVILPPL-SFKLKVI-------RAY-------------AVNKAWV-IGFLMDIFG 58 (272)
Q Consensus 1 ~~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~-~~~~~~~-------~~l-------------lr~p~W~-~G~~~~~~G 58 (272)
|.-.+..|+++|++.+.....-|-+-++..+. ..--|.+ .-. -|+..++ .+-+..+.+
T Consensus 1 m~~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls 80 (140)
T COG2510 1 MMAAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS 80 (140)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence 44567889999999999999999998865432 1100100 001 1112222 334777889
Q ss_pred HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 59 ~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
+.+.+.|+..|+.|.|-|+=-+|++++..+|..++|||+|..+|+|+.+++.|.++++
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999999999999987764
No 18
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.37 E-value=3.7e-05 Score=70.79 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 50 ~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
.|+. ....+.++..++...+.+..|=+..+..+++.+++..++|||+++++|.++.+.+.|+....
T Consensus 71 ~g~~-~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 71 VAIV-HTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHH-HHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 5555 57778899999999999999999999999999999999999999999999999999997653
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.32 E-value=0.00021 Score=63.53 Aligned_cols=192 Identities=20% Similarity=0.200 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHH-HHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccc
Q 024090 50 IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSH-FYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSIS 128 (272)
Q Consensus 50 ~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa-~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~ 128 (272)
.+......+..+...++...|.+..+++..++.+++.+++. .++|||+++++|.++.....|+.++..++..+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~-- 152 (292)
T COG0697 75 LALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILS-- 152 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHH--
Confidence 67777788888899999999999999999999999999997 777999999999999999999988875544432110
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhccCcc-cch-hh
Q 024090 129 IFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGF-VFLEQGFP-TML-VP 205 (272)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~-~~~~~g~~-~l~-~~ 205 (272)
..-....+..+...+ ......++..+. + ......+ ..+. ....-... ...+.+.. ... -.
T Consensus 153 -~~g~~~~l~a~~~~a---~~~~~~~~~~~~---~---~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 215 (292)
T COG0697 153 -LLGLLLALAAALLWA---LYTALVKRLSRL---G---PVTLALL-----LQLL--LALLLLLLFFLSGFGAPILSRAWL 215 (292)
T ss_pred -HHHHHHHHHHHHHHH---HHHHHHHHhcCC---C---hHHHHHH-----HHHH--HHHHHHHHHHhccccccCCHHHHH
Confidence 011111122221111 111222221100 0 0111110 1111 11110000 11111111 111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 206 VCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 206 ~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
...+..+..+..+++++.++++..+...... ....+|+.+..+++.++||+.+..
T Consensus 216 ~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~l~~~e~~~~~ 270 (292)
T COG0697 216 LLLYLGVFSTGLAYLLWYYALRLLGASLVAL-LSLLEPVFAALLGVLLLGEPLSPA 270 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHH-HHHHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334444468899999999998554443 347899999999999999998653
No 20
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.10 E-value=0.00066 Score=64.46 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 58 G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
+...+..+++..+.+..|=+-.++.+|+.+++..++|||++++++.++.+.+.|+.+..
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 34456699999999999999999999999999999999999999999999999998765
No 21
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.09 E-value=8.7e-05 Score=60.64 Aligned_cols=98 Identities=18% Similarity=0.247 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHH
Q 024090 5 ICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLA 83 (272)
Q Consensus 5 v~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~ 83 (272)
.++=++|.++--.++...|.+.... +..+|+..+.++...+.+-..|++..|+++.+|+. ..+.+
T Consensus 4 wl~L~~Ai~~Ev~~t~~LK~s~g~~--------------~~~~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v 69 (120)
T PRK10452 4 WILLALAIATEITGTLSMKWASVSE--------------GNGGFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGIL 69 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC--------------CcHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 3444555666677888888763211 12346788999999999999999999999999996 69999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 84 ~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
.+..++.+++||++|..++.|+.++..|++.+-
T Consensus 70 ~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 70 FITLFSVLLFDESLSLMKIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998874
No 22
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.97 E-value=0.0024 Score=58.04 Aligned_cols=204 Identities=21% Similarity=0.187 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCC--C--CCC
Q 024090 48 WVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG--E--EQE 123 (272)
Q Consensus 48 W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~--~--~~~ 123 (272)
+..=-.++.+.=.++..+++..|-+.-|=+--..+++|++++..++|||+++++|.++.+.+.|+.....++ + .++
T Consensus 20 ~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~ 99 (244)
T PF04142_consen 20 LAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSS 99 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccccc
Confidence 345567889999999999999999999999999999999999999999999999999999999998775211 1 111
Q ss_pred CCc------cchhhHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 024090 124 PSS------ISIFQLPWLAFVVSILFVLLNGWL--RICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFL 195 (272)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~ 195 (272)
..+ .................-.+.+.. ...++... +-..|-+-+ ..-|+.+.+.....+......
T Consensus 100 ~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~------s~~~~N~qL-~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 100 SSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNV------SLWIQNMQL-YLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred ccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccch------hHHHHHHHH-HHHHHHHHHHHHhcccccccc
Confidence 111 011111111111111111111111 12232221 123344444 344555566665555443333
Q ss_pred ccCcccchhhHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 024090 196 EQGFPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS 260 (272)
Q Consensus 196 ~~g~~~l~~~~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~ 260 (272)
++|...-++++.+.....-+..|+.... -++.-+.. .=...+..+-++..++...+||+++..
T Consensus 173 ~~g~f~G~~~~~~~~i~~~a~gGllva~-v~KyadnI-~K~fa~a~siv~t~~~s~~lf~~~~s~ 235 (244)
T PF04142_consen 173 ESGFFHGYSWWVWIVIFLQAIGGLLVAF-VLKYADNI-VKGFATAVSIVLTAVLSVLLFGFPPSL 235 (244)
T ss_pred cCCchhhcchHHHHHHHHHHHhhHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 4455445666655443333334444332 34433311 111223455667778899999888654
No 23
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.88 E-value=0.00012 Score=56.86 Aligned_cols=87 Identities=21% Similarity=0.296 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhH-HHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHH
Q 024090 7 LTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAW-VIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAI 84 (272)
Q Consensus 7 lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W-~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~~ 84 (272)
+=+++.++...++...|+.. -.+++.| ...+..+..++.+-..|++..|++++.|+. ..+.+.
T Consensus 5 ~L~~a~~~ev~~~~~lK~s~---------------g~~~~~~~~~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~ 69 (93)
T PF00893_consen 5 FLLLAILFEVVGTIALKASH---------------GFTQLIPTILAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVG 69 (93)
T ss_dssp HHHHHHHHHHHHHHH-----------------------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------hhcchhhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 33455667777888888742 1223333 455668899999999999999999999997 499999
Q ss_pred HHHHHHHHhccccchhhHHHHHHH
Q 024090 85 LSIFSHFYLKEVMNAVDWMGITLA 108 (272)
Q Consensus 85 ~~~lsa~~l~~rl~~~ew~gv~l~ 108 (272)
+.+.+..++||++|..+|.|+.++
T Consensus 70 ~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 70 VTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHhheeeC
Confidence 999999999999999999998764
No 24
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.84 E-value=0.00037 Score=64.20 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch-----H---HHHHHh------hcH-h----HHHHHHHHHHHHHHHH
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-----K---VIRAYA------VNK-A----WVIGFLMDIFGALLML 63 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~-----~---~~~~ll------r~p-~----W~~G~~~~~~G~~~~~ 63 (272)
++.++++.+++|++..+++.||..++.+...... . ...... .++ . ...|+....+++.++.
T Consensus 148 ~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~ 227 (293)
T PRK10532 148 TGAALALGAGACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEM 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999888765543221100 0 000111 111 1 3577888889999999
Q ss_pred HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 64 ~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
.+++..|-+.+.++...+.+++.+++..+++|+++..+|+|.+++..|.+...
T Consensus 228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888765
No 25
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.83 E-value=0.0005 Score=55.29 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHh-HHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHH
Q 024090 6 CLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKA-WVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLA 83 (272)
Q Consensus 6 ~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~-W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~ 83 (272)
++=+++.+|--.++...|.+.. .+++. ++..+..+...+.+-..|++..|+++.+|+- ..+.+
T Consensus 5 l~L~~a~~~Ev~~~~~lK~s~g---------------f~~~~~~i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v 69 (110)
T PRK09541 5 IYLGGAILAEVIGTTLMKFSEG---------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIV 69 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---------------CCchhHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 4445667777778888887621 12333 4578889999999999999999999999995 58999
Q ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 84 ILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 84 ~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
.+...+..++||++|..++.|+.++..|++.+-
T Consensus 70 ~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999874
No 26
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.71 E-value=0.006 Score=58.04 Aligned_cols=74 Identities=19% Similarity=0.281 Sum_probs=65.3
Q ss_pred hhcHhHH--HHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 43 AVNKAWV--IGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 43 lr~p~W~--~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
+|+|.|. .=-.+|..|=-+...|+..-+++-+|=+-+.+.+++.++|..++|+|.+..++.|+.+++.|+.++.
T Consensus 75 ~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~ 150 (334)
T PF06027_consen 75 LKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVV 150 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhhee
Confidence 4455554 4446788888889999999999999999999999999999999999999999999999999998764
No 27
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.67 E-value=0.00074 Score=60.11 Aligned_cols=111 Identities=16% Similarity=0.164 Sum_probs=86.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc--cc-hH--------HHHHHhh-------cHhH--H--HHHHHHHHHH
Q 024090 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLS--FK-LK--------VIRAYAV-------NKAW--V--IGFLMDIFGA 59 (272)
Q Consensus 2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~--~~-~~--------~~~~llr-------~p~W--~--~G~~~~~~G~ 59 (272)
+.++.++++++++++..++++|+..++.+... .. .+ ....+.. +..| . .|......++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999876544221 00 00 0011111 1123 2 4555677899
Q ss_pred HHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 024090 60 LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (272)
Q Consensus 60 ~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl 112 (272)
.++..++...|.+.+..+...+.+++.+++..++||+++.++|.|..++..|+
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999998875
No 28
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.57 E-value=0.0006 Score=62.30 Aligned_cols=111 Identities=18% Similarity=0.244 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCc-c----chHH--------HHHH--------hhcHhH----HHHHHHHHHH
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVILPPLS-F----KLKV--------IRAY--------AVNKAW----VIGFLMDIFG 58 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~-~----~~~~--------~~~l--------lr~p~W----~~G~~~~~~G 58 (272)
++.+++++++|++..+++.|+..++.++.. . .... .... ..++.| ..+......+
T Consensus 145 g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~ 224 (281)
T TIGR03340 145 AYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGA 224 (281)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999888754433211 0 0000 0000 001122 2455566788
Q ss_pred HHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 024090 59 ALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (272)
Q Consensus 59 ~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~ 114 (272)
+.+...+++..|.+.+.+..-.+.+++.+++..++||+++..+|+|..++..|+.+
T Consensus 225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 89999999999999999999999999999999999999999999999999999865
No 29
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.54 E-value=0.0017 Score=59.83 Aligned_cols=112 Identities=10% Similarity=0.048 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc----c-hHHHH-HHh-------hcH-hHH----HHHHHHHHHHHHHHH
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF----K-LKVIR-AYA-------VNK-AWV----IGFLMDIFGALLMLR 64 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~----~-~~~~~-~ll-------r~p-~W~----~G~~~~~~G~~~~~~ 64 (272)
.+..+++.+++|++.+++++||-.++.+.... . .-... ... -++ .|. .| ...+.++.++..
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~t~~~~~l~~~ 234 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAA-AAMGFGYAAWNV 234 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 36789999999999999999997654332110 0 00000 000 111 221 33 346678889999
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090 65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (272)
Q Consensus 65 AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l 115 (272)
++...|-+.+.+..-.+.+++.+++..+++|+++..+|+|.+++..|+.+.
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~ 285 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLC 285 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999999999999999999987654
No 30
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.002 Score=51.63 Aligned_cols=70 Identities=19% Similarity=0.318 Sum_probs=64.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090 46 KAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (272)
Q Consensus 46 p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl-~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l 115 (272)
.+.+..++.+...|.+...|+...|+++.+++ ...+-+.+...+..++|||+|..+++++.++..|++.+
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 34556888999999999999999999999999 48899999999999999999999999999999999876
No 31
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.48 E-value=0.0023 Score=51.15 Aligned_cols=92 Identities=21% Similarity=0.135 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcH-hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHH
Q 024090 9 LAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNK-AWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILS 86 (272)
Q Consensus 9 l~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p-~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~~~~ 86 (272)
++|.++=-.++...|++.. .+++ ++..-+..+...|.+...|+...|+++..++- ..+.+.+.
T Consensus 7 ~~Ai~~Ev~~t~~Lk~s~g---------------f~~~~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~ 71 (105)
T PRK11431 7 VIAGLLEVVWAVGLKYTHG---------------FSRLTPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAA 71 (105)
T ss_pred HHHHHHHHHHHHHHHhhhC---------------CccHHHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHH
Confidence 3455555567777776411 1233 34567788889999999999999999999996 58999999
Q ss_pred HHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090 87 IFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (272)
Q Consensus 87 ~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l 115 (272)
+.+.+++||++|..++.|+.++..|++.+
T Consensus 72 lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 72 ITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999876
No 32
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.48 E-value=0.0031 Score=50.74 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhH
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWV-IGFLMDIFGALLMLRALSQAPVSVIQPVS-GCG 81 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W~-~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~ 81 (272)
+...=++|.++--.++...|++. -.++|.|. .-...+...|.+...|++..|+++..++- ..+
T Consensus 8 ~~~~L~~Ai~~Ev~~t~~Lk~s~---------------gf~~~~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG 72 (109)
T PRK10650 8 HAAWLALAIVLEIVANIFLKFSD---------------GFRRKIYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFG 72 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---------------CCcchHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHH
Confidence 33444555566566777776651 12334433 45666777888899999999999999996 588
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090 82 LAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (272)
Q Consensus 82 l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l 115 (272)
.+.+.+.+.+++||++|..+|.|+.++..|++.+
T Consensus 73 ~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 73 IAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998865
No 33
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=97.45 E-value=0.00035 Score=54.47 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090 49 VIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (272)
Q Consensus 49 ~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l 115 (272)
..|......++.+...++...|.+.+.++..++.+++.+++..++|||+++++|.|+.+++.|+.++
T Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 58 FLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred HhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3566666888999999999999999999999999999999999999999999999999999998764
No 34
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.40 E-value=0.0046 Score=57.03 Aligned_cols=114 Identities=17% Similarity=0.124 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-cc----hH-------HHHHHh-------------hcHh-HH----HHH
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FK----LK-------VIRAYA-------------VNKA-WV----IGF 52 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~-~~----~~-------~~~~ll-------------r~p~-W~----~G~ 52 (272)
.++.+++++++|++..+++|||-.++.++.. .. .. ...... .++. |+ .|+
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 222 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence 5889999999999999999999654322211 00 00 000000 1122 22 356
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 53 ~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
...+.++.++..++...+-.-+.++...+.+++.+++..+++|+++..+|+|..+++.|+.+..
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHh
Confidence 6678888899888887777788888888888999999999999999999999999999887654
No 35
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.40 E-value=0.0038 Score=57.38 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch----H----HHHHH-----h---hc-HhHH----HHHHHHHHHHHH
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL----K----VIRAY-----A---VN-KAWV----IGFLMDIFGALL 61 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~----~----~~~~l-----l---r~-p~W~----~G~~~~~~G~~~ 61 (272)
.+.++++++++|++..++.+||..++.+...... . ..... . -+ ..|. .|+.....++.+
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999654322110000 0 00000 0 11 2233 466667788999
Q ss_pred HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 62 ~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
+..++...|.+.+..+..++.+++.+++..++||+++..+|+|..++..|+.+..
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988764
No 36
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.39 E-value=0.059 Score=50.27 Aligned_cols=200 Identities=12% Similarity=0.143 Sum_probs=103.6
Q ss_pred HHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCch--hhh-hhh-hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q 024090 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS--VIQ-PVS-GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGT 112 (272)
Q Consensus 37 ~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~pls--vVQ-Pl~-~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl 112 (272)
+.+.+..|||+=+....+...=...|..=+-.+|-. +.+ .++ -++.++..+++..++|||+||-||+++.+..+|+
T Consensus 60 ~~~~~~~~~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV 139 (293)
T COG2962 60 RELKQLLKQPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGV 139 (293)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 466678888876655555444444444444333332 111 111 3345588999999999999999999999999998
Q ss_pred HhhccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 024090 113 IGVGAGGEEQEPSSISIFQLPWLAFVVSILFVLLNGWLRICKHQRREQEMIEFEVVEEIIYGLESGILFGMASVISKLG- 191 (272)
Q Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~- 191 (272)
....-...+ .+|.++..+.... .....|+. +-.....|.+.=+.-.+--..
T Consensus 140 ~~~~~~~g~----------lpwval~la~sf~----~Ygl~RK~--------------~~v~a~~g~~lE~l~l~p~al~ 191 (293)
T COG2962 140 LIQTWLLGS----------LPWVALALALSFG----LYGLLRKK--------------LKVDALTGLTLETLLLLPVALI 191 (293)
T ss_pred HHHHHHcCC----------CcHHHHHHHHHHH----HHHHHHHh--------------cCCchHHhHHHHHHHHhHHHHH
Confidence 765322111 1233433332222 11122221 112223333322221111110
Q ss_pred -HhhhccCcc-----cchhhHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHH
Q 024090 192 -FVFLEQGFP-----TMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPTAR 265 (272)
Q Consensus 192 -~~~~~~g~~-----~l~~~~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~~~~~ 265 (272)
.-..+|... ...+...+.+.-..+..-+.+...|-+.=| .+....+...||..=..+++.++||+++.+....
T Consensus 192 yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lp-ls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~ 270 (293)
T COG2962 192 YLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLP-LSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVT 270 (293)
T ss_pred HHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 011111110 111111111222234445566665555555 3333446789999999999999999998765443
No 37
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.31 E-value=0.083 Score=48.87 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 47 AWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 47 ~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
.|..=..++..+-.++-.||.+.|...-+=.=...++++.+++..++|+|.+++||.++.++++|++.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~ 135 (303)
T PF08449_consen 66 KYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFT 135 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheee
Confidence 4555567888888999999999999877777788999999999999999999999999999999998876
No 38
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.25 E-value=0.0045 Score=59.25 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-c---------hHHHHHHhhc----HhHH-------HHHH----HHHH
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-K---------LKVIRAYAVN----KAWV-------IGFL----MDIF 57 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-~---------~~~~~~llr~----p~W~-------~G~~----~~~~ 57 (272)
++..+++.+++|+++.+++|||-.++-|+... . +-.+..+... +.|+ ..+. ....
T Consensus 189 lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~l 268 (358)
T PLN00411 189 IGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITSV 268 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHHH
Confidence 47889999999999999999998776544210 0 0001111111 1121 1122 2334
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 58 G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
++.++..+++..+-+.+-...-...+|+.+++..+++|+++..+++|.+++..|+.+..
T Consensus 269 ay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 269 YYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred HHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 77888889988888888888888999999999999999999999999999999998764
No 39
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.82 E-value=0.24 Score=45.70 Aligned_cols=173 Identities=13% Similarity=0.147 Sum_probs=88.0
Q ss_pred HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCCCCCCccchhhHHHHHHHHHH
Q 024090 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEEQEPSSISIFQLPWLAFVVSI 141 (272)
Q Consensus 62 ~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (272)
...++...|+.+.-.+= ..-.+.++.+-. | +.+|...+++.+.|+.++.-.+++..+-++-+ ...++..+.
T Consensus 88 FY~si~riPlGiAVAiE---F~GPL~vA~~~s-R--r~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~G---v~~Al~AG~ 158 (292)
T COG5006 88 FYLSIERIPLGIAVAIE---FTGPLAVALLSS-R--RLRDFVWVALAVLGIWLLLPLGQSVWSLDPVG---VALALGAGA 158 (292)
T ss_pred HHHHHHhccchhhhhhh---hccHHHHHHHhc-c--chhhHHHHHHHHHHHHhheeccCCcCcCCHHH---HHHHHHHhH
Confidence 46788999999887773 222222222222 2 23565566777778777764444333222111 112233332
Q ss_pred HHHHHHHHHHHhhhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccCcccchhhHHHHHHHHHHHH---
Q 024090 142 LFVLLNGWLRICKHQR-REQEMIEFEVVEEIIYGLESGILFGMASVISKLGFVFLEQGFPTMLVPVCISISICCSGT--- 217 (272)
Q Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~ra~llg~aaG~~fG~~A~l~K~~~~~~~~g~~~l~~~~~~~~~v~~~~~--- 217 (272)
..+ ++....+|.. ..+ ..+ |++.|...+..-++- .+..+ .-..+++|--+.....++++
T Consensus 159 ~Wa---~YIv~G~r~g~~~~------g~~----g~a~gm~vAaviv~P---ig~~~-ag~~l~~p~ll~laLgvavlSSa 221 (292)
T COG5006 159 CWA---LYIVLGQRAGRAEH------GTA----GVAVGMLVAALIVLP---IGAAQ-AGPALFSPSLLPLALGVAVLSSA 221 (292)
T ss_pred HHH---HHHHHcchhcccCC------Cch----HHHHHHHHHHHHHhh---hhhhh-cchhhcChHHHHHHHHHHHHhcc
Confidence 233 2222233322 111 112 333333322222211 01111 11234444333333334444
Q ss_pred -HHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 218 -GFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 218 -g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
=+.+.|.|+++=|.-...+.| -.||..+...|..+|||++...
T Consensus 222 lPYsLEmiAL~rlp~~~F~~Ll-SLePa~aAl~G~i~L~e~ls~~ 265 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLL-SLEPALAALSGLIFLGETLTLI 265 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHH-HhhHHHHHHHHHHHhcCCCCHH
Confidence 467999999998865555544 6899999999999999998654
No 40
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.71 E-value=0.031 Score=49.58 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch-------HH--HHHHh---------hcHhHH--HHHHHHHHHHHH
Q 024090 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSFKL-------KV--IRAYA---------VNKAWV--IGFLMDIFGALL 61 (272)
Q Consensus 2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~-------~~--~~~ll---------r~p~W~--~G~~~~~~G~~~ 61 (272)
+.++.++++++++++..++.+|+-. +.+...... .. ..... ++...+ .|+...+.++.+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999865 222111010 00 00001 111111 445555567888
Q ss_pred HHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 62 MLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 62 ~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
...++...|...+.++...+.+++..++..+++|+++.++|+|+.++..|.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~ 286 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999998887664
No 41
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=96.61 E-value=0.038 Score=50.89 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCcc------chH-HHH--H--------HhhcHh-HHH----HHHHHHHHHHHHH
Q 024090 6 CLTLAATAGNNIGKVLQKKGTVILPPLSF------KLK-VIR--A--------YAVNKA-WVI----GFLMDIFGALLML 63 (272)
Q Consensus 6 ~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~------~~~-~~~--~--------llr~p~-W~~----G~~~~~~G~~~~~ 63 (272)
.+.+.+++|++..++++||..++...... .+- ... . ...+|. |+. +.....+++.+..
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~ 231 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFT 231 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999997432111100 000 000 0 011222 111 1124457888999
Q ss_pred HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090 64 RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (272)
Q Consensus 64 ~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l 115 (272)
.+++..|-+.+.++.-.+.+++.+++..+++|+++..++.|..++..++.++
T Consensus 232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997776554
No 42
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=95.59 E-value=0.18 Score=46.65 Aligned_cols=112 Identities=21% Similarity=0.146 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc----ch-----HH--HHHH-----hhcHhHH----HHHHHHHHHHHH
Q 024090 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF----KL-----KV--IRAY-----AVNKAWV----IGFLMDIFGALL 61 (272)
Q Consensus 2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~----~~-----~~--~~~l-----lr~p~W~----~G~~~~~~G~~~ 61 (272)
+.++..+++++++|+.-...=|+.. .++.+. .. .. ...+ ..+..++ .|+. -..++.+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHH
Confidence 4588999999999988877766542 222111 00 00 0111 0111222 5555 5788888
Q ss_pred HHHHHh-hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhH----HHHHHHHHHHHhhc
Q 024090 62 MLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDW----MGITLAGIGTIGVG 116 (272)
Q Consensus 62 ~~~AL~-~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew----~gv~l~~~Gl~~l~ 116 (272)
...++. ..+.+..-++...+.+.+...+.+++||+.+++|+ +|..++..|..+.+
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 889999 89999999999999999999999999999999999 99999988887653
No 43
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.53 E-value=0.19 Score=46.29 Aligned_cols=114 Identities=15% Similarity=0.167 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCc-cchH--------------HHHHHhhcHhHH-H----HHHHHHHHHHHH
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS-FKLK--------------VIRAYAVNKAWV-I----GFLMDIFGALLM 62 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~-~~~~--------------~~~~llr~p~W~-~----G~~~~~~G~~~~ 62 (272)
.++.+|+.+..|.+.=-+.-||..+..+... ...+ +-..-+.+|.=+ . |+.-..+=|.++
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLE 227 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLE 227 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHH
Confidence 4778899999999888888888875433211 1111 111222333322 3 333344457789
Q ss_pred HHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 63 LRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 63 ~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
.+||+-.|-..---+++++..+++..+..++||++|..||.++.+++.+.....
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~ 281 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGST 281 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999988776544
No 44
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=94.95 E-value=0.3 Score=44.84 Aligned_cols=114 Identities=9% Similarity=0.049 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc--cCCCCccch-----HH----HHHHh-h----------c--------HhHHHHH
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTV--ILPPLSFKL-----KV----IRAYA-V----------N--------KAWVIGF 52 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~--~~~~~~~~~-----~~----~~~ll-r----------~--------p~W~~G~ 52 (272)
.+.+++++++++++..++++||-.+ +.+...... .. ..... . + ..|..+.
T Consensus 145 ~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (302)
T TIGR00817 145 AGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSL 224 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHH
Confidence 5888999999999999999999765 322211100 00 00000 0 0 0121121
Q ss_pred HHHHHHH----HHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 53 LMDIFGA----LLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 53 ~~~~~G~----~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
......+ .++..+++..+-+...-......+++..++..+++|+++..++.|..++..|+....
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHH
Confidence 1111111 233456666666666666777777999999999999999999999999999998765
No 45
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=94.47 E-value=0.15 Score=47.53 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHH---------hhc--------HhHH--HHHHHHHHHHHHHHH
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAY---------AVN--------KAWV--IGFLMDIFGALLMLR 64 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~l---------lr~--------p~W~--~G~~~~~~G~~~~~~ 64 (272)
+.++.-++ ..++...++-++.....|.+-...+.+.+. -++ +.|+ -| .+-..|..++.-
T Consensus 39 gl~l~~vs-~ff~~~~vv~t~~~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg-~mG~tgvmlmyy 116 (346)
T KOG4510|consen 39 GLLLLTVS-YFFNSCMVVSTKVLENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRG-FMGFTGVMLMYY 116 (346)
T ss_pred CceehhhH-HHHhhHHHhhhhhhccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeeh-hhhhhHHHHHHH
Confidence 34455566 777888888777766555332111221111 111 2233 22 233456677888
Q ss_pred HHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 65 ALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 65 AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
|+...|++=..=+.-.+.+|+.+++..++|||.|+-|-++......|++++.
T Consensus 117 a~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 117 ALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred HHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 8888888766666777888999999999999999999999999999998776
No 46
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=93.79 E-value=5.6 Score=36.90 Aligned_cols=64 Identities=20% Similarity=0.263 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhccccchhhHH----HHHHHHHHHHhhc
Q 024090 53 LMDIFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGTIGVG 116 (272)
Q Consensus 53 ~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~~~~~lsa~~l~~rl~~~ew~----gv~l~~~Gl~~l~ 116 (272)
++-..|..+|+.++...-+|..-|+. ...|+.+.+.+..++||.-+.++|+ ++.++++|..+-+
T Consensus 53 ~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 53 AFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 45567889999999999999999996 8899999999999999999998886 5556667776655
No 47
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=93.77 E-value=0.17 Score=47.33 Aligned_cols=108 Identities=19% Similarity=0.284 Sum_probs=82.1
Q ss_pred HHHH-HHHHHHHHHHHhhhccCCCCccc--hHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHH
Q 024090 9 LAAT-AGNNIGKVLQKKGTVILPPLSFK--LKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAIL 85 (272)
Q Consensus 9 l~aA-~~~a~g~vlQ~~aa~~~~~~~~~--~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~ 85 (272)
.++= +|.++=.++..|+.++-...+.+ ......-++...++.=.++|+.|--++.+.|.+-.-|--|=+=..-+.|+
T Consensus 47 FlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFv 126 (372)
T KOG3912|consen 47 FLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFV 126 (372)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhh
Confidence 3344 67777778888876652221110 00000122333466678999999999999999999999999988899999
Q ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 86 SIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 86 ~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
-++|..+++|+++.++|.|+..+..|++.++
T Consensus 127 glfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 127 GLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred HHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 9999999999999999999999999998876
No 48
>COG2510 Predicted membrane protein [Function unknown]
Probab=92.90 E-value=0.48 Score=39.47 Aligned_cols=56 Identities=29% Similarity=0.313 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-hHHHHHh
Q 024090 212 ICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA-PTARFSL 268 (272)
Q Consensus 212 v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~-~~~~~~~ 268 (272)
-..+..++++.=+|+|.|+...+.+ ..=..|+..+.+++++|||++... ..+..+.
T Consensus 74 Gla~glswl~Yf~ALk~G~as~VvP-ldk~svvl~~lls~lfL~E~ls~~~~iG~~LI 130 (140)
T COG2510 74 GLAGGLSWLLYFRALKKGKASRVVP-LDKTSVVLAVLLSILFLGERLSLPTWIGIVLI 130 (140)
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEE-cccccHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3457778899999999999554333 235679999999999999998654 4444443
No 49
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=91.43 E-value=1.4 Score=42.12 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc----c--------hHH---HHHHhhcHhHHHHHHHHHHHHHH-HHHH
Q 024090 2 WELICLTLAATAGNNIGKVLQKKGTVILPPLSF----K--------LKV---IRAYAVNKAWVIGFLMDIFGALL-MLRA 65 (272)
Q Consensus 2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~----~--------~~~---~~~llr~p~W~~G~~~~~~G~~~-~~~A 65 (272)
.++-++++.+|.+|++.+++||+-.++.++... + ... -+.-+++-.|=.-.....+|+.+ ++.-
T Consensus 167 i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~~ 246 (334)
T PF06027_consen 167 ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFLF 246 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHHH
Confidence 357789999999999999999999887653220 0 000 01112222333333444444443 4555
Q ss_pred HhhcCchh-------hhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 66 LSQAPVSV-------IQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 66 L~~~plsv-------VQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
+...|+.+ +.-=+-++-+.+++...++.|++++...++|.+++.+|+++..
T Consensus 247 y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~ 304 (334)
T PF06027_consen 247 YSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYN 304 (334)
T ss_pred HHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEE
Confidence 55555433 3333456677889999999999999999999999999998875
No 50
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=90.48 E-value=5.2 Score=31.85 Aligned_cols=47 Identities=13% Similarity=0.056 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 214 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 214 ~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
.-...+++.+.++|.-|...+-+..+ ..++....+|..+|||+++..
T Consensus 46 ~~~l~~~~~~~al~~iplg~Ay~~~~-l~~v~~~~~~~l~f~E~ls~~ 92 (111)
T PRK15051 46 CLGLAMVLWLLVLQNVPVGIAYPMLS-LNFVWVTLAAVKLWHEPVSPR 92 (111)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHH-HHHHHHHHHHHHHhCCCCCHH
Confidence 34557888888999988554444444 789999999999999999653
No 51
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=86.41 E-value=3 Score=33.66 Aligned_cols=100 Identities=23% Similarity=0.329 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhhcc---CCCCcc----chHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhhh-hhHHHHH
Q 024090 14 GNNIGKVLQKKGTVI---LPPLSF----KLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPVS-GCGLAIL 85 (272)
Q Consensus 14 ~~a~g~vlQ~~aa~~---~~~~~~----~~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl~-~~~l~~~ 85 (272)
.-+..+-+-||+... +.+.+. -.+....++.+..++.=++++--|-.+...-|+-.|+++.-|+- +++..|+
T Consensus 14 lWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l~w~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfaft 93 (125)
T KOG4831|consen 14 LWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFLNWEYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFT 93 (125)
T ss_pred HHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHH
Confidence 345555666777643 222211 23467788889999999999999999999999999999999996 7799999
Q ss_pred HHHHHHHhccccc-hhhHHHHHHHHHHHHh
Q 024090 86 SIFSHFYLKEVMN-AVDWMGITLAGIGTIG 114 (272)
Q Consensus 86 ~~lsa~~l~~rl~-~~ew~gv~l~~~Gl~~ 114 (272)
+..+-.+ +|+.. ++...|..+++.|+.+
T Consensus 94 a~~G~~L-GE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 94 AIFGKAL-GEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHHHh-ccccccceeehhhhHHhhhhhh
Confidence 9888655 55555 4566788888888753
No 52
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=86.08 E-value=1.5 Score=33.64 Aligned_cols=47 Identities=28% Similarity=0.201 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 214 CSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 214 ~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
....++.+++.++|..+...+.. ....+|+.+.+++..+++|+.+..
T Consensus 63 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~pv~~~i~~~~~~~e~~~~~ 109 (126)
T PF00892_consen 63 GTALAYLLYFYALKYISASIVSI-LQYLSPVFAAILGWLFLGERPSWR 109 (126)
T ss_pred ceehHHHHHHHHHHhcchhHHHH-HHHHHHHHHHHHHHHHcCCCCCHH
Confidence 35778889999999988654444 346899999999999999998643
No 53
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=84.99 E-value=5.4 Score=31.29 Aligned_cols=46 Identities=20% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCCChH
Q 024090 216 GTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPSAPT 263 (272)
Q Consensus 216 ~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~~~ 263 (272)
..++.++..|++..+. .+. .+...+|++..++|..+|+|+++...+
T Consensus 46 ~~~~~~~~~a~~~~~~-~v~-~i~~~~pi~~~ll~~~~~~er~~~~~~ 91 (113)
T PF13536_consen 46 GVAYLLFFYALSYAPA-LVA-AIFSLSPIFTALLSWLFFKERLSPRRW 91 (113)
T ss_pred HHHHHHHHHHHHhCcH-HHH-HHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 3667788888998884 333 345679999999999999999876543
No 54
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=83.67 E-value=23 Score=33.61 Aligned_cols=37 Identities=11% Similarity=0.247 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090 79 GCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (272)
Q Consensus 79 ~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l 115 (272)
...-++..+++..++||++|..+++|.+++..|+...
T Consensus 310 ~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 310 TLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 3455588899999999999999999999999998764
No 55
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=83.12 E-value=22 Score=28.55 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccC----CCCc-c------c----------------hH---HHHHHhh-----c-Hh
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVIL----PPLS-F------K----------------LK---VIRAYAV-----N-KA 47 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~----~~~~-~------~----------------~~---~~~~llr-----~-p~ 47 (272)
|..+++.+.++.+.=.+++|+.-++. ...+ . . ++ ......+ + ..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 46788999999999999888877663 1110 0 0 00 0111111 2 22
Q ss_pred HHHHHHHHHHHHHHHHHHHhh---cCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 024090 48 WVIGFLMDIFGALLMLRALSQ---APVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (272)
Q Consensus 48 W~~G~~~~~~G~~~~~~AL~~---~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~ 114 (272)
|+.-+..-..++..|...... -+-..-+=+....-+++.+++..+++|++|..++.|+.++..|...
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 333333344455555444322 2222233335667788899999999999999999999999998764
No 56
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=82.35 E-value=6.9 Score=34.22 Aligned_cols=111 Identities=14% Similarity=0.066 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCc----cch------HHHHHH--------------hh-cHhHHHHHHHHHH
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLS----FKL------KVIRAY--------------AV-NKAWVIGFLMDIF 57 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~----~~~------~~~~~l--------------lr-~p~W~~G~~~~~~ 57 (272)
.++...+.+..+.+...+.|++.-++.+..- ... ...... .+ ++..|.-......
T Consensus 85 ~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 164 (222)
T TIGR00803 85 VGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWIVGLLNVG 164 (222)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHHHHHHHHh
Confidence 3445556666777899999999865422110 000 000000 00 1223333344445
Q ss_pred HHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 024090 58 GALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113 (272)
Q Consensus 58 G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~ 113 (272)
|..+-...+...+-...-=....+.+++.++|.++++++++...|.|+.++..|+.
T Consensus 165 ~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~ 220 (222)
T TIGR00803 165 GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATF 220 (222)
T ss_pred cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeE
Confidence 54554455555555566666788999999999999999999999999999887653
No 57
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=80.68 E-value=4.7 Score=39.25 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHH---HHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCC
Q 024090 49 VIGFLMDIFGALLML---RALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGG 119 (272)
Q Consensus 49 ~~G~~~~~~G~~~~~---~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~ 119 (272)
-.++.+-.+-|..|. .||++-.++-..=+-.+|=.||+.++..+-.||+|..+.+++.+...|++.+.-++
T Consensus 160 k~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~ 233 (416)
T KOG2765|consen 160 KLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGD 233 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecc
Confidence 345555555666654 46777777666666788899999999999999999999999999999998886443
No 58
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=79.39 E-value=62 Score=31.20 Aligned_cols=65 Identities=23% Similarity=0.255 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 52 FLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 52 ~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
..++.+=--+|.++++..|-+.=|..--.-...|++++..++|||+++++|.+..+...|+..+-
T Consensus 99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 34555555589999999999999999999999999999999999999999999999999998764
No 59
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=73.30 E-value=38 Score=27.75 Aligned_cols=60 Identities=8% Similarity=-0.032 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHH--HHhCCCCCC-ChHHHHHh
Q 024090 208 ISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGM--LALGERLPS-APTARFSL 268 (272)
Q Consensus 208 ~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv--~vLGE~~~~-~~~~~~~~ 268 (272)
.+..+++..++++++..++++-+...+-+.. ...+......+. .+|||++.. ...+.++.
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~-sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lI 113 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLL-SLSYALVYLAAMLLPWFNETFSLKKTLGVACI 113 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH-HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4466778889999999999999854333332 344544445555 489999964 34444443
No 60
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=71.62 E-value=14 Score=28.35 Aligned_cols=49 Identities=22% Similarity=0.299 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhhhccCchh-HHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 212 ICCSGTGFYYQTRGLKHGRAI-VVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 212 v~~~~~g~~l~q~A~q~G~~~-~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
+..-..++++..+|+|.-|.. ..+. .+-...+.-.++|+.+|||++...
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYav-w~g~g~v~~~~~~~~~f~E~~s~~ 85 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAV-WTGLGIVGVTLVGVFFFGESLSLS 85 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHH-HHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHHHhCCCCCHH
Confidence 335567788888899998843 3332 334556666889999999998654
No 61
>PRK13499 rhamnose-proton symporter; Provisional
Probab=68.29 E-value=1.2e+02 Score=29.28 Aligned_cols=113 Identities=16% Similarity=-0.005 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhccCCC-------Cc-------------cchHHHHHHhhc---HhHHH---HHHHH
Q 024090 2 WELICLTLAATAGNNIGKVLQKKGTVILPP-------LS-------------FKLKVIRAYAVN---KAWVI---GFLMD 55 (272)
Q Consensus 2 ~lav~lAl~aA~~~a~g~vlQ~~aa~~~~~-------~~-------------~~~~~~~~llr~---p~W~~---G~~~~ 55 (272)
.++++..+++++|++.=.+-||+ .++ .+ .+ ...+.+..++++ .-|.. +=.+-
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~-w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W 83 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKK-WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW 83 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56899999999999988899998 332 22 00 011233344442 22433 33455
Q ss_pred HHHHHHHHHHHhhcCchhhhhhh-hhHHHHHHHHHHHHhcccc---chhhH----HHHHHHHHHHHhhc
Q 024090 56 IFGALLMLRALSQAPVSVIQPVS-GCGLAILSIFSHFYLKEVM---NAVDW----MGITLAGIGTIGVG 116 (272)
Q Consensus 56 ~~G~~~~~~AL~~~plsvVQPl~-~~~l~~~~~lsa~~l~~rl---~~~ew----~gv~l~~~Gl~~l~ 116 (272)
..|...|..+.+..-+|+-+|+. ...++++.++...+++|-- +..++ +|++++++|+++.+
T Consensus 84 ~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s 152 (345)
T PRK13499 84 GIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVG 152 (345)
T ss_pred HhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 67888899999999999999994 8889999999999988643 44444 47888888888765
No 62
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=67.13 E-value=40 Score=31.56 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhcc-C------cccchhhHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHH
Q 024090 169 EEIIYGLESGILFGMASVISKLGFVFLEQ-G------FPTMLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVA 241 (272)
Q Consensus 169 ra~llg~aaG~~fG~~A~l~K~~~~~~~~-g------~~~l~~~~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~ 241 (272)
-++.+++.+.++.+....+-|-.....++ + ...++.-+.++........|-..+-.||.-.|...+.+. ...
T Consensus 7 iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Pl-g~~ 85 (300)
T PF05653_consen 7 IGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLGEILNFVALGFAPASLVAPL-GAL 85 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcchHHHHHHHHhhhHHHHHHH-Hhh
Confidence 35566777777777777777765433322 1 112332233445455667777788888888885544443 345
Q ss_pred HHHHHHHHHHHHhCCCCCC-ChHHHHHhhh
Q 024090 242 SIVTGVVAGMLALGERLPS-APTARFSLLL 270 (272)
Q Consensus 242 ~pvva~~~Gv~vLGE~~~~-~~~~~~~~~~ 270 (272)
.-+...++.-.++||+++. +..+..+..+
T Consensus 86 ~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~ 115 (300)
T PF05653_consen 86 SLVFNAVLARFFLGEKLTRRDIVGCALIIL 115 (300)
T ss_pred hhhhHHHHhHHHhcccchHhHHhhHHHHHh
Confidence 5666788999999999964 4455544433
No 63
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=64.12 E-value=12 Score=30.02 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 51 GFLMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 51 G~~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
.+.+...|+++...--+++-+.-.. +..=.+.++.-...+.|+|+++.||+|..+|.+|..++-
T Consensus 39 ~~~L~lfg~l~Tl~p~~fGRvYAAY--GGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~ 102 (107)
T PF02694_consen 39 ALSLALFGWLLTLQPAAFGRVYAAY--GGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIIL 102 (107)
T ss_pred HHHHHHHHHHhhcCcccchhHHHHh--hhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheE
Confidence 3444455555543333333332222 223345566778889999999999999999999987654
No 64
>PRK02237 hypothetical protein; Provisional
Probab=63.79 E-value=14 Score=29.78 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090 82 LAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (272)
Q Consensus 82 l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l 115 (272)
.+.++.-...+.|+|+++.||+|.+++.+|..++
T Consensus 70 I~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 70 VAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred HHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 4455677889999999999999999999998665
No 65
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.55 E-value=20 Score=28.66 Aligned_cols=60 Identities=28% Similarity=0.212 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhhc-------CchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 024090 53 LMDIFGALLMLRALSQA-------PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (272)
Q Consensus 53 ~~~~~G~~~~~~AL~~~-------plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~ 114 (272)
.....-+.+|+=|=+.| -+-..|-+ +++.+-.++|.+++||+++...|.+..++..++..
T Consensus 46 GIA~fEY~LqvPaNRiG~~v~s~~QLK~mQEV--ItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 46 GIAFFEYLLQVPANRIGHQVYSAAQLKTMQEV--ITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred hHHHHHHHHhCccchhhhhhccHHHHHHHHHH--HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 44455667777665555 33344444 57888899999999999999999988877776654
No 66
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=56.73 E-value=13 Score=29.81 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=43.1
Q ss_pred HhhcHhHH--HHHHHHHHHHHHHHHHHh-hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 42 YAVNKAWV--IGFLMDIFGALLMLRALS-QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 42 llr~p~W~--~G~~~~~~G~~~~~~AL~-~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
.=|++.|. ..+.+...|+++....-. ++-..-.. +..=...++.-...+.|.|++|.||+|..+|.+|..++.
T Consensus 28 ~gks~~~~l~g~~sL~lf~~llT~~~~~a~GRvYAAY--GGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil 103 (109)
T COG1742 28 LGKSALWLLPGALSLALFGWLLTLQPAAAFGRVYAAY--GGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVIL 103 (109)
T ss_pred cCCchHhHHHHHHHHHHHHHHHHcCCchhhhhHHHHh--cchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeE
Confidence 33445554 445556666666433222 33222111 122233455567788899999999999998888876554
No 67
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=55.25 E-value=51 Score=27.21 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=43.6
Q ss_pred HhHH-HHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHHHHHHHHHHH----HhccccchhhHHHHHHHHHHHH
Q 024090 46 KAWV-IGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGLAILSIFSHF----YLKEVMNAVDWMGITLAGIGTI 113 (272)
Q Consensus 46 p~W~-~G~~~~~~G~~~~~~AL~~~plsvVQPl-~~~~l~~~~~lsa~----~l~~rl~~~ew~gv~l~~~Gl~ 113 (272)
|+|. .|-.+-..-...+.........+...-+ ....+..++++-++ ..|+|++.++.+|+.++..|+.
T Consensus 64 p~w~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 64 PWWAYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred ChHHhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4444 4444444444455555544444444433 45666666776665 6789999999999999998875
No 68
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=54.31 E-value=1.8e+02 Score=26.71 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc-------------------c--h----HHHHHHhhcHh-HHHHHHHHH
Q 024090 3 ELICLTLAATAGNNIGKVLQKKGTVILPPLSF-------------------K--L----KVIRAYAVNKA-WVIGFLMDI 56 (272)
Q Consensus 3 lav~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~-------------------~--~----~~~~~llr~p~-W~~G~~~~~ 56 (272)
.|+.+.+++-++.+.-.+.|+|--++-+.... . . +...-..++|. |+.-+....
T Consensus 154 ~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~ 233 (303)
T PF08449_consen 154 LGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSL 233 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 37889999999999999999998865332210 0 0 01111223344 334455555
Q ss_pred HHHHHHHHHHh----hcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090 57 FGALLMLRALS----QAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (272)
Q Consensus 57 ~G~~~~~~AL~----~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l 115 (272)
.++.+|..-.. ++|+... =+..+.=.++.++|..+++++++..+|.|+.++..|+..-
T Consensus 234 ~~~~g~~~i~~~~~~~~al~~t-~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~ 295 (303)
T PF08449_consen 234 TGALGQFFIFYLIKKFSALTTT-IVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLY 295 (303)
T ss_pred HHHHHHHHHHHHHHhcCchhhh-hHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHH
Confidence 66666543332 3333222 2334567788999999999999999999999999988754
No 69
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=53.12 E-value=1.4e+02 Score=26.43 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCc-c-c----hHHH----HHHh---h--c--HhHH----HHHHHHHHHHHHHHHH
Q 024090 7 LTLAATAGNNIGKVLQKKGTVILPPLS-F-K----LKVI----RAYA---V--N--KAWV----IGFLMDIFGALLMLRA 65 (272)
Q Consensus 7 lAl~aA~~~a~g~vlQ~~aa~~~~~~~-~-~----~~~~----~~ll---r--~--p~W~----~G~~~~~~G~~~~~~A 65 (272)
.++.+++|++...+.+||..++..... . . +-.. .... . + +.|. .|+ ....++.+...+
T Consensus 150 ~~l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~t~i~~~l~~~a 228 (256)
T TIGR00688 150 EALVLAFSFTAYGLIRKALKNTDLAGFCLETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGL-ITGTPLLAFVIA 228 (256)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHH-HHHHHHHHHHHH
Confidence 578899999999999988653221110 0 0 0000 0000 0 1 1233 343 366788899999
Q ss_pred HhhcCchhhhhhhhhHHHHHHHHHHHH
Q 024090 66 LSQAPVSVIQPVSGCGLAILSIFSHFY 92 (272)
Q Consensus 66 L~~~plsvVQPl~~~~l~~~~~lsa~~ 92 (272)
++..|-+.+.|..-.+.+++..++.++
T Consensus 229 ~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 229 ANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988764
No 70
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=51.85 E-value=43 Score=31.16 Aligned_cols=60 Identities=27% Similarity=0.324 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHH----HHHHHHHHH
Q 024090 53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWM----GITLAGIGT 112 (272)
Q Consensus 53 ~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~----gv~l~~~Gl 112 (272)
.+...|-.+.+.+-...=+..-.|+.=.+.+++.+-+-+++||+=++||+. |..++++|-
T Consensus 203 ~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 203 LIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGA 266 (269)
T ss_pred HHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhh
Confidence 444556666777777777888888888899999999999999999999996 444455543
No 71
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=51.36 E-value=1.6e+02 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 238 AAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 238 ~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
.+..+++...++++..|||++...
T Consensus 184 ~~~~~~~~s~lls~~~f~~~ls~~ 207 (222)
T TIGR00803 184 VTALSIILSTLASVRLFDAKISST 207 (222)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHH
Confidence 456899999999999999998544
No 72
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=44.92 E-value=29 Score=32.14 Aligned_cols=68 Identities=12% Similarity=0.136 Sum_probs=47.3
Q ss_pred hcHh-HHHHHHHHHHHHHHHH----HHHhhcCch--hhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh
Q 024090 44 VNKA-WVIGFLMDIFGALLML----RALSQAPVS--VIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIG 114 (272)
Q Consensus 44 r~p~-W~~G~~~~~~G~~~~~----~AL~~~pls--vVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~ 114 (272)
|.|. ||-=.++.+.+...|. .--.++|+. +|. .+-=.||.+.|..++..+++.|+|.|-.++..++..
T Consensus 236 RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivT---TTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 236 RHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVT---TTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred hccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEe---ehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 4454 6644555555555543 233677764 332 345679999999999999999999999998887753
No 73
>COG3859 Predicted membrane protein [Function unknown]
Probab=44.81 E-value=2.2e+02 Score=24.98 Aligned_cols=87 Identities=15% Similarity=0.293 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhccCccc-chhhHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHH-
Q 024090 169 EEIIYGLESGILFGMASVISKLGFVFLEQGFPT-MLVPVCISISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTG- 246 (272)
Q Consensus 169 ra~llg~aaG~~fG~~A~l~K~~~~~~~~g~~~-l~~~~~~~~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva- 246 (272)
|..-.|..+|+.+|+..-.+--.. . ..+.. +++-. + +....|..|.+-+|...+.+......- ...+++
T Consensus 51 rG~kaG~~tGLl~Gll~~i~G~~Y--~-lhpsQ~~ldYi-l-af~~iG~aG~F~~~~~~~~~k~i~~~~----~~~~~av 121 (185)
T COG3859 51 RGLKAGLLTGLLWGLLHLILGKAY--I-LHPSQVLLDYI-L-AFMAIGFAGLFASSVRKQKKKLINKAL----GGVFIAV 121 (185)
T ss_pred hhhHHHHHHHHHHHHHHHHhCchh--h-ccHHHHHHHhh-H-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 344568899999998776542111 1 11111 12211 1 224468889888887777666433221 122333
Q ss_pred -------HHHHHHHhCCCCCCChHH
Q 024090 247 -------VVAGMLALGERLPSAPTA 264 (272)
Q Consensus 247 -------~~~Gv~vLGE~~~~~~~~ 264 (272)
++-|++++||..|.++..
T Consensus 122 ~lRyl~HfisGivFfgsyApkG~~a 146 (185)
T COG3859 122 FLRYLFHFISGIVFFGSYAPKGWSA 146 (185)
T ss_pred HHHHHHHHHHHHheeeccCCCCCce
Confidence 778999999999877543
No 74
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=41.75 E-value=1.5e+02 Score=23.57 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhhccCch-hHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 212 ICCSGTGFYYQTRGLKHGRA-IVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 212 v~~~~~g~~l~q~A~q~G~~-~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
++.-...+++.++++|+=|. ...+. -+-..-+....+|+.+|||++...
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYav-w~GlG~v~~~l~g~~~f~e~~~~~ 86 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAI-WSGVGIVLISLLSWGFFGQRLDLP 86 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44555678877888887763 22222 122344445888999999998643
No 75
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=41.11 E-value=32 Score=27.65 Aligned_cols=61 Identities=21% Similarity=0.197 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhc-------CchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 024090 51 GFLMDIFGALLMLRALSQA-------PVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113 (272)
Q Consensus 51 G~~~~~~G~~~~~~AL~~~-------plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~ 113 (272)
.......=|.+|+=|-+.| -+=+.|-+ .++.+-.+++.+++||+++.+...|..+.+.++.
T Consensus 37 SWgIAffEY~l~VPANRiG~~~~s~~QLKi~QEv--itL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 37 SWGIAFFEYCLQVPANRIGYQTFSLAQLKIIQEV--ITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHHHHHhCcchhhhccccCHHHHHHHHHH--HhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 4445566677888777666 33344444 4777778899999999999999988887766654
No 76
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=40.40 E-value=5.3 Score=37.91 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Q 024090 53 LMDIFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTI 113 (272)
Q Consensus 53 ~~~~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~ 113 (272)
+....|-++.=.+++.-|++.+|-+-++..+|+.+++..+.+|+.+++.+.....++.|+.
T Consensus 91 ~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ 151 (316)
T KOG1441|consen 91 LVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVA 151 (316)
T ss_pred HHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEE
Confidence 3455677777889999999999999999999999999999999999999866555555543
No 77
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=36.42 E-value=2.1e+02 Score=22.75 Aligned_cols=49 Identities=16% Similarity=0.193 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhhhccCch-hHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 212 ICCSGTGFYYQTRGLKHGRA-IVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 212 v~~~~~g~~l~q~A~q~G~~-~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
++.-...+++..+++|+=|. ...+. -+-..-+...++|+.+|||++...
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAv-W~GiG~v~~~~ig~~~f~e~~~~~ 91 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYAL-WGGFGIAATLAAGWILFGQRLNRK 91 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHH-HHHHHHHHHHHHHHHHcCCCCCHH
Confidence 44555678888889987762 22222 122334444789999999998653
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=32.82 E-value=2.1e+02 Score=22.91 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhhhccCch-hHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 213 CCSGTGFYYQTRGLKHGRA-IVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 213 ~~~~~g~~l~q~A~q~G~~-~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
+.-...|++...|+|+=|. ...+.- +-..-+-.+.+|+.+|||++...
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW-~GiG~v~~~l~g~~~f~E~l~~~ 86 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIW-TGIGIVGTALVGVLLFGESLSLI 86 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHH-HHHHHHHHHHHHHHhcCCcCCHH
Confidence 3445677777778888662 222221 22333444789999999998643
No 79
>PRK11431 multidrug efflux system protein; Provisional
Probab=32.77 E-value=2.5e+02 Score=22.18 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhhccCch-hHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 024090 212 ICCSGTGFYYQTRGLKHGRA-IVVSTCAAVASIVTGVVAGMLALGERLPSA 261 (272)
Q Consensus 212 v~~~~~g~~l~q~A~q~G~~-~~~~~~~~v~~pvva~~~Gv~vLGE~~~~~ 261 (272)
++.-...+++...++|.=|. ...+. =+-..-+...++|+.+|||++...
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAv-W~GiG~v~~~lig~~~f~e~~~~~ 85 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAV-WTGIGAVGAAITGIVLLGESASPA 85 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHH-HHHHHHHHHHHHHHHHhCCCCCHH
Confidence 44556678888888887662 23222 122344555889999999998643
No 80
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=32.45 E-value=1.9e+02 Score=23.49 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhhccCch-hHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 024090 212 ICCSGTGFYYQTRGLKHGRA-IVVSTCAAVASIVTGVVAGMLALGERLPS 260 (272)
Q Consensus 212 v~~~~~g~~l~q~A~q~G~~-~~~~~~~~v~~pvva~~~Gv~vLGE~~~~ 260 (272)
++.-...+++...++|.=|. ...+. -+-..-+....+|+.+|||++..
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYav-w~GiG~v~~~~ig~~~f~E~~s~ 85 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYAL-WEGIGILFITLFSVLLFDESLSL 85 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHH-HHHHHHHHHHHHHHHHhCCCCCH
Confidence 33445567777777776552 22221 11223333466777778887754
No 81
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=27.84 E-value=1.2e+02 Score=27.37 Aligned_cols=61 Identities=21% Similarity=0.246 Sum_probs=53.6
Q ss_pred HHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccCCCC
Q 024090 61 LMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAGGEE 121 (272)
Q Consensus 61 ~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~~~~ 121 (272)
+...||-..+-+.+..+.+.+-.|--+++..++|+|+..-+..++.+...|+++++-.+.+
T Consensus 69 ~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~ 129 (290)
T KOG4314|consen 69 LYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE 129 (290)
T ss_pred HHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch
Confidence 4678899999999999999999999999999999999999999999998888888744333
No 82
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=27.39 E-value=9.1e+02 Score=27.01 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=35.9
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHhhcCch-----------hhhhhhhhHHHHHHHHHHHHhccccchhhH
Q 024090 45 NKAWVIGFLMDIFGALLMLRALSQAPVS-----------VIQPVSGCGLAILSIFSHFYLKEVMNAVDW 102 (272)
Q Consensus 45 ~p~W~~G~~~~~~G~~~~~~AL~~~pls-----------vVQPl~~~~l~~~~~lsa~~l~~rl~~~ew 102 (272)
+--||.-+++..++.+++++-....+.. .+.-+....+++.++.+...+.+|.++..+
T Consensus 75 r~Aw~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~L~~~R~~F~~~~~~~s~ 143 (1094)
T PRK02983 75 RAAWWVLLAYLVLAALLNVALLALGVNTAAETFGENSLSIIGFAVHVVAIVLLVLARREFPARVRRGAL 143 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccCCCCcchH
Confidence 3559999999999999987765543221 222333344555566666677777554443
No 83
>TIGR03758 conj_TIGR03758 integrating conjugative element protein, PFL_4701 family. Members of this family of small, hydrophobic proteins are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.06 E-value=94 Score=22.78 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=17.8
Q ss_pred HHHhhhccCch-hHHHHHHHHHHHHHHHHHHHHHh
Q 024090 221 YQTRGLKHGRA-IVVSTCAAVASIVTGVVAGMLAL 254 (272)
Q Consensus 221 l~q~A~q~G~~-~~~~~~~~v~~pvva~~~Gv~vL 254 (272)
-|++|||+++- .|... ..-++|.++.+++|
T Consensus 3 aQ~sAFqA~SG~~p~~l----~~l~lG~~~~vllL 33 (65)
T TIGR03758 3 AQQSAFQAASGIDPQAM----NTLILGLVLAVLFL 33 (65)
T ss_pred HHHHHHHhccCCCHHHH----HHHHHHHHHHHHHH
Confidence 48899999983 34222 23455665555543
No 84
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=24.98 E-value=5.7e+02 Score=24.11 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=27.5
Q ss_pred HHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhh
Q 024090 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQP 76 (272)
Q Consensus 37 ~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQP 76 (272)
+...+.+|||..|.........+.....-..+.|..+.+-
T Consensus 209 ~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~ 248 (413)
T PRK15403 209 RDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDA 248 (413)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh
Confidence 3556788999998877776666666555556677666543
No 85
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=23.21 E-value=3.7e+02 Score=25.38 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhcCchhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhh
Q 024090 56 IFGALLMLRALSQAPVSVIQPVSGCGLAILSIFSHFYLKEVMNAVDWMGITLAGIGTIGV 115 (272)
Q Consensus 56 ~~G~~~~~~AL~~~plsvVQPl~~~~l~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l 115 (272)
.+-..+...|-...|++.+-=+.=.+.....+++.++.+|+++..|+..-+.+-.++++.
T Consensus 222 avpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~ 281 (293)
T COG2962 222 AVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALF 281 (293)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 344555677777778777655555555567777888888888888887777766666554
No 86
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=22.98 E-value=4.5e+02 Score=22.74 Aligned_cols=88 Identities=17% Similarity=0.310 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhccCcc-cchh-hHHHHHHHHHHHHHHHHH--HhhhccCc---hh-HHH--H-H
Q 024090 169 EEIIYGLESGILFGMASVISKLGFVFLEQGFP-TMLV-PVCISISICCSGTGFYYQ--TRGLKHGR---AI-VVS--T-C 237 (272)
Q Consensus 169 ra~llg~aaG~~fG~~A~l~K~~~~~~~~g~~-~l~~-~~~~~~~v~~~~~g~~l~--q~A~q~G~---~~-~~~--~-~ 237 (272)
|....|..+|..||+..-..... ... ++. .++| +.++ ..+|..|++-. |++++..+ .. ... + .
T Consensus 42 ~G~~~G~~~G~l~Gll~~~~g~~--~~~-~p~q~llDY~laf---~~lGlaGlf~~~~~~~~~~~~~~~~~~~i~~g~~i 115 (177)
T PF09515_consen 42 RGWKAGILAGFLYGLLQFLLGPA--YIV-HPVQVLLDYPLAF---GALGLAGLFAKPLQKTLKNNRYKKSYLNIILGTFI 115 (177)
T ss_dssp H-HHHHHHHHHHHHHHHHHTT-S----S-SHHHHHHHHTHHH---HHGGGGGGG-----------SSS--HHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHhCCc--eeh-hHHHHHHHHHHHH---HHHHHHHhcccccchhhhhcccchhHHHHHHHHHH
Confidence 34456888888888876553210 111 121 1233 2222 34677777644 44555443 11 111 1 0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCh
Q 024090 238 AAVASIVTGVVAGMLALGERLPSAP 262 (272)
Q Consensus 238 ~~v~~pvva~~~Gv~vLGE~~~~~~ 262 (272)
.....=+.-+.-|+.++||-.|++.
T Consensus 116 ~~~~r~~~h~isGvif~~~yAp~g~ 140 (177)
T PF09515_consen 116 AVFLRYFCHFISGVIFFGSYAPEGM 140 (177)
T ss_dssp HHHHHHHHHHHHHHHH-GGG--TT-
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 1123444558889999999988764
Done!