Query 024090
Match_columns 272
No_of_seqs 133 out of 429
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024090.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024090hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 99.0 4.8E-09 1.6E-13 82.9 12.5 101 4-118 3-104 (110)
2 2i68_A Protein EMRE; transmemb 98.8 1.4E-08 4.7E-13 83.5 7.9 99 4-116 3-102 (137)
3 2i68_A Protein EMRE; transmemb 95.7 0.045 1.5E-06 44.4 8.4 60 210-269 35-95 (137)
4 3b5d_A Multidrug transporter E 95.1 0.19 6.5E-06 38.8 9.9 51 210-260 35-85 (110)
5 3o7q_A L-fucose-proton symport 20.3 4.2E+02 0.014 22.9 8.7 36 37-72 249-284 (438)
6 2zt9_E Cytochrome B6-F complex 18.7 84 0.0029 18.8 2.4 16 170-185 12-27 (31)
7 1vf5_E Protein PET L; photosyn 8.3 1.2E+02 0.0041 18.3 0.8 16 170-185 13-28 (32)
8 2hac_A T-cell surface glycopro 5.5 2.3E+02 0.0077 17.2 1.0 19 82-100 13-31 (33)
9 3arc_J Photosystem II reaction 4.8 2.7E+02 0.0092 17.5 1.1 11 44-54 7-17 (40)
10 2zy9_A Mg2+ transporter MGTE; 3.4 2.3E+03 0.079 19.4 8.9 10 40-49 376-385 (473)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=99.01 E-value=4.8e-09 Score=82.85 Aligned_cols=101 Identities=17% Similarity=0.188 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHH
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL 82 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl-~~~~l 82 (272)
..++-+++.++...++.+.|++.. .-|.++++.+......++.+...|++..|++.+.|+ ...+.
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~~--------------~~~~~~~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~ 68 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSEG--------------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC--------------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHH
Confidence 456677888999999999999621 113466788999999999999999999999999999 69999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhccC
Q 024090 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVGAG 118 (272)
Q Consensus 83 ~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~~~ 118 (272)
+++.+++..++||++|..+|.|+.+++.|++.+...
T Consensus 69 v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999988643
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.78 E-value=1.4e-08 Score=83.50 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCccchHHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCchhhhhh-hhhHH
Q 024090 4 LICLTLAATAGNNIGKVLQKKGTVILPPLSFKLKVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVSVIQPV-SGCGL 82 (272)
Q Consensus 4 av~lAl~aA~~~a~g~vlQ~~aa~~~~~~~~~~~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~plsvVQPl-~~~~l 82 (272)
+.++-+++.++...++.+.|++. + .-+.++++.|+...++++.+...|++..|++.+.|+ ..++.
T Consensus 3 ~~l~Ll~ail~ev~~~~~lK~s~------g--------~~~~~~~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~p 68 (137)
T 2i68_A 3 PYIYLGGAILAEVIGTTLMKFSE------G--------FTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGI 68 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHC--------------------------CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------c--------cchHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHH
Confidence 34566778888899999999862 1 113456779999999999999999999999999999 79999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHhhc
Q 024090 83 AILSIFSHFYLKEVMNAVDWMGITLAGIGTIGVG 116 (272)
Q Consensus 83 ~~~~~lsa~~l~~rl~~~ew~gv~l~~~Gl~~l~ 116 (272)
+++.+++..+++|+++..+|+|+.+++.|++++.
T Consensus 69 v~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~ 102 (137)
T 2i68_A 69 VLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN 102 (137)
T ss_dssp HHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998875
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.69 E-value=0.045 Score=44.40 Aligned_cols=60 Identities=17% Similarity=0.088 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC-ChHHHHHhh
Q 024090 210 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS-APTARFSLL 269 (272)
Q Consensus 210 ~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~-~~~~~~~~~ 269 (272)
..++....++++++.+++..+...+-+..+...|+...++|+.+|||++.. ...+..+..
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi 95 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLIC 95 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 335567788999999999999654444335689999999999999999954 455555444
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.08 E-value=0.19 Score=38.81 Aligned_cols=51 Identities=18% Similarity=0.111 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 024090 210 ISICCSGTGFYYQTRGLKHGRAIVVSTCAAVASIVTGVVAGMLALGERLPS 260 (272)
Q Consensus 210 ~~v~~~~~g~~l~q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vLGE~~~~ 260 (272)
..+.....++++.+.++|..|...+-+..+-..|+...++|+.+|||+++.
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~ 85 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDL 85 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCH
Confidence 334566778899999999999654444335678999999999999999864
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=20.32 E-value=4.2e+02 Score=22.85 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=25.7
Q ss_pred HHHHHHhhcHhHHHHHHHHHHHHHHHHHHHhhcCch
Q 024090 37 KVIRAYAVNKAWVIGFLMDIFGALLMLRALSQAPVS 72 (272)
Q Consensus 37 ~~~~~llr~p~W~~G~~~~~~G~~~~~~AL~~~pls 72 (272)
+...+.+|+|.++............+..-..+.|..
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (438)
T 3o7q_A 249 ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRY 284 (438)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999998887777766666665555555655
No 6
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=18.69 E-value=84 Score=18.83 Aligned_cols=16 Identities=38% Similarity=0.912 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 024090 170 EIIYGLESGILFGMAS 185 (272)
Q Consensus 170 a~llg~aaG~~fG~~A 185 (272)
+...|.+.|+.||+-+
T Consensus 12 ~~~~~iA~GL~fGLrs 27 (31)
T 2zt9_E 12 ALFTGIAAGLLFGLRS 27 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999999876
No 7
>1vf5_E Protein PET L; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.24.1 PDB: 2d2c_E* 2e74_E* 2e75_E* 2e76_E*
Probab=8.31 E-value=1.2e+02 Score=18.29 Aligned_cols=16 Identities=31% Similarity=0.885 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 024090 170 EIIYGLESGILFGMAS 185 (272)
Q Consensus 170 a~llg~aaG~~fG~~A 185 (272)
+.+.|.+.|+.||+-+
T Consensus 13 ~~~f~iA~GL~fGlrs 28 (32)
T 1vf5_E 13 ALFFGIAVGIIFAIKS 28 (32)
T ss_dssp HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4577899999988754
No 8
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=5.47 E-value=2.3e+02 Score=17.16 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhccccchh
Q 024090 82 LAILSIFSHFYLKEVMNAV 100 (272)
Q Consensus 82 l~~~~~lsa~~l~~rl~~~ 100 (272)
++...++...+.|+|+++.
T Consensus 13 ~iYgii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 13 FIYGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4456677777888888764
No 9
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=4.81 E-value=2.7e+02 Score=17.53 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=7.6
Q ss_pred hcHhHHHHHHH
Q 024090 44 VNKAWVIGFLM 54 (272)
Q Consensus 44 r~p~W~~G~~~ 54 (272)
|-|.|+.|++.
T Consensus 7 RiPLWlvgtv~ 17 (40)
T 3arc_J 7 RIPLWIVATVA 17 (40)
T ss_dssp SSCHHHHHHHH
T ss_pred cccEEeeeeeh
Confidence 45788877654
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=3.36 E-value=2.3e+03 Score=19.38 Aligned_cols=10 Identities=20% Similarity=0.109 Sum_probs=4.2
Q ss_pred HHHhhcHhHH
Q 024090 40 RAYAVNKAWV 49 (272)
Q Consensus 40 ~~llr~p~W~ 49 (272)
.+.+++....
T Consensus 376 ~~~~~ke~~~ 385 (473)
T 2zy9_A 376 RRVFLKEMGV 385 (473)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444333
Done!