Query 024090
Match_columns 272
No_of_seqs 133 out of 429
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 18:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024090.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024090hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 7.6 1.8E+02 0.013 15.5 2.9 18 168-185 11-28 (32)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 4.4 1.8E+02 0.013 16.1 1.6 11 44-54 1-11 (34)
3 d1pv7a_ f.38.1.2 (A:) Lactose 2.6 9.7E+02 0.071 17.2 5.3 8 42-49 3-10 (417)
4 d1cola_ f.1.1.1 (A:) Colicin A 1.7 7.3E+02 0.053 18.8 2.9 22 74-95 165-186 (197)
5 d2p7tc1 f.14.1.1 (C:86-119) Po 1.7 7.3E+02 0.053 13.1 2.0 18 75-92 13-30 (34)
6 d1uspa_ d.227.1.1 (A:) Organic 1.6 1E+03 0.073 15.4 3.3 21 6-26 49-69 (137)
7 d1rh5b_ f.23.28.1 (B:) Preprot 1.4 1E+03 0.073 14.2 2.4 12 95-106 16-27 (56)
8 d1ukka_ d.227.1.1 (A:) Hypothe 1.3 1.2E+03 0.085 15.2 3.3 22 6-27 50-71 (141)
9 d1qwia_ d.227.1.1 (A:) Osmotic 1.3 1.3E+03 0.092 15.2 3.3 21 6-26 52-72 (142)
10 d2id3a2 a.121.1.1 (A:81-203) P 1.2 1.4E+03 0.1 14.6 3.3 37 223-259 63-100 (123)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.63 E-value=1.8e+02 Score=15.50 Aligned_cols=18 Identities=28% Similarity=0.739 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024090 168 VEEIIYGLESGILFGMAS 185 (272)
Q Consensus 168 ~ra~llg~aaG~~fG~~A 185 (272)
.-++++|.+.|+.|+.-+
T Consensus 11 fialffgiavgiifaiks 28 (32)
T d2e74e1 11 FIALFFGIAVGIIFAIKS 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhheeeEEE
Confidence 356788999999987643
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.44 E-value=1.8e+02 Score=16.09 Aligned_cols=11 Identities=9% Similarity=0.401 Sum_probs=6.8
Q ss_pred hcHhHHHHHHH
Q 024090 44 VNKAWVIGFLM 54 (272)
Q Consensus 44 r~p~W~~G~~~ 54 (272)
|-|.|+.|++.
T Consensus 1 riPLWlv~tv~ 11 (34)
T d2axtj1 1 RIPLWIVATVA 11 (34)
T ss_dssp CCCHHHHHHHH
T ss_pred CCcEEEeeehh
Confidence 34778776653
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.58 E-value=9.7e+02 Score=17.22 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=5.2
Q ss_pred HhhcHhHH
Q 024090 42 YAVNKAWV 49 (272)
Q Consensus 42 llr~p~W~ 49 (272)
++|||.+|
T Consensus 3 ~lkn~~~~ 10 (417)
T d1pv7a_ 3 YLKNTNFW 10 (417)
T ss_dssp HHHSHHHH
T ss_pred cccCchHH
Confidence 56777655
No 4
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=1.72 E-value=7.3e+02 Score=18.79 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=14.5
Q ss_pred hhhhhhhHHHHHHHHHHHHhcc
Q 024090 74 IQPVSGCGLAILSIFSHFYLKE 95 (272)
Q Consensus 74 VQPl~~~~l~~~~~lsa~~l~~ 95 (272)
+.|++..+.+++.+.++++--.
T Consensus 165 ~~~iGI~g~li~~~v~alIdd~ 186 (197)
T d1cola_ 165 AIAVGIAGILLAAVVGALIDDK 186 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTH
T ss_pred ccHHHHHHHHHHHHHHHHhhHH
Confidence 3457777777777777776443
No 5
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=1.67 E-value=7.3e+02 Score=13.11 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=9.5
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 024090 75 QPVSGCGLAILSIFSHFY 92 (272)
Q Consensus 75 QPl~~~~l~~~~~lsa~~ 92 (272)
.-+...+++++++-..+.
T Consensus 13 agits~glv~aa~atwfv 30 (34)
T d2p7tc1 13 AGITSFGLVTAALATWFV 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccchhhhHHHHHHHHhh
Confidence 334455667766544333
No 6
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=1.56 E-value=1e+03 Score=15.41 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024090 6 CLTLAATAGNNIGKVLQKKGT 26 (272)
Q Consensus 6 ~lAl~aA~~~a~g~vlQ~~aa 26 (272)
+.|+.+++...+..++++++.
T Consensus 49 laAlasC~~~t~~~~a~~~gi 69 (137)
T d1uspa_ 49 AAGYAACFQGALGVVSRRQKI 69 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 446666666677778888775
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=1.35 E-value=1e+03 Score=14.21 Aligned_cols=12 Identities=0% Similarity=0.227 Sum_probs=7.1
Q ss_pred cccchhhHHHHH
Q 024090 95 EVMNAVDWMGIT 106 (272)
Q Consensus 95 ~rl~~~ew~gv~ 106 (272)
+++++.|..-++
T Consensus 16 ~KP~~~Ef~~ia 27 (56)
T d1rh5b_ 16 KKPTKDEYLAVA 27 (56)
T ss_dssp ECCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 456777765444
No 8
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=1.34 E-value=1.2e+03 Score=15.22 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 024090 6 CLTLAATAGNNIGKVLQKKGTV 27 (272)
Q Consensus 6 ~lAl~aA~~~a~g~vlQ~~aa~ 27 (272)
+.++.+++...+..++|++...
T Consensus 50 laala~C~~~~~~~~a~~~g~~ 71 (141)
T d1ukka_ 50 AAAHAGCFSMALAASLEREGFP 71 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 4456666666777888888764
No 9
>d1qwia_ d.227.1.1 (A:) Osmotically inducible protein OsmC {Escherichia coli [TaxId: 562]}
Probab=1.26 E-value=1.3e+03 Score=15.17 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024090 6 CLTLAATAGNNIGKVLQKKGT 26 (272)
Q Consensus 6 ~lAl~aA~~~a~g~vlQ~~aa 26 (272)
+.|+.+++...+..++|++..
T Consensus 52 laAlasC~~~~~~~~a~~~~~ 72 (142)
T d1qwia_ 52 GAAHAACFSMALSLMLGEAGF 72 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 456666666777888888865
No 10
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=1.20 E-value=1.4e+03 Score=14.58 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=15.4
Q ss_pred HhhhccCchhHHHHHHHHHHHHHHHHHHHHHh-CCCCC
Q 024090 223 TRGLKHGRAIVVSTCAAVASIVTGVVAGMLAL-GERLP 259 (272)
Q Consensus 223 q~A~q~G~~~~~~~~~~v~~pvva~~~Gv~vL-GE~~~ 259 (272)
++|-++|+..+-...-.+.|.+.|.+.-=.++ +|+++
T Consensus 63 ~rA~~RGEl~~~~d~~~~~d~l~g~l~~R~L~~~~~~d 100 (123)
T d2id3a2 63 RDAVARGEVPDGTDPHGVVAAVSAPLYYALLNTGRSLT 100 (123)
T ss_dssp HHHHHTTSSCTTBCHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHcCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 34666665321111123455555544433333 44443
Done!