BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024092
         (272 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
           OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
          Length = 153

 Score = 43.9 bits (102), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 43/73 (58%)

Query: 77  KKPPKESTVVLKIRLHCEGCISKIKKIIYKTKGVDNVTIDGGKDLVTVKGTMDVKELVPY 136
           KK  +  TV +K+++ CEGC  K+++ +   KGV +VT++     VTV G +D  ++V  
Sbjct: 20  KKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVAR 79

Query: 137 LKEKLKRNVEVVP 149
           +  +  + VE+ P
Sbjct: 80  MSHRTGKKVELWP 92



 Score = 32.7 bits (73), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 7  GVVDVKTDCGANKVTVTGKVEPAKLKERLEAKTKKKVDL 45
          GV  V  +  A+KVTV G V+P K+  R+  +T KKV+L
Sbjct: 52 GVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGKKVEL 90


>sp|Q0Q462|NCAP_BC512 Nucleoprotein OS=Bat coronavirus 512/2005 GN=N PE=3 SV=1
          Length = 394

 Score = 31.6 bits (70), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 106 KTKGVDNVTIDGGKDLVTVKGTMDVKE--LVPYLKEKLKRNVEVV 148
           +T GV  V IDG K   T  G     E  LVP  K KL  NVE+V
Sbjct: 93  RTDGVFWVAIDGAKTQPTGLGVRKSSEKPLVPKFKNKLPNNVEIV 137


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.308    0.130    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,308,222
Number of Sequences: 539616
Number of extensions: 6227264
Number of successful extensions: 43729
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 654
Number of HSP's that attempted gapping in prelim test: 35113
Number of HSP's gapped (non-prelim): 5669
length of query: 272
length of database: 191,569,459
effective HSP length: 116
effective length of query: 156
effective length of database: 128,974,003
effective search space: 20119944468
effective search space used: 20119944468
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)