Query 024093
Match_columns 272
No_of_seqs 280 out of 1632
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:55:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.4E-36 2.9E-41 263.9 5.6 154 1-154 1-184 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 2.2E-32 4.8E-37 207.6 4.5 77 2-80 1-77 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1E-28 2.2E-33 190.0 6.0 74 2-76 1-74 (83)
4 smart00432 MADS MADS domain. 99.9 2E-28 4.3E-33 177.0 5.1 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 1.5E-27 3.2E-32 172.5 4.4 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 1.1E-25 2.4E-30 158.0 1.9 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.8 1E-18 2.2E-23 138.4 9.5 96 71-193 1-96 (100)
8 KOG0015 Regulator of arginine 99.7 5.3E-18 1.1E-22 155.6 2.7 76 2-77 63-145 (338)
9 COG5068 ARG80 Regulator of arg 99.3 6.3E-13 1.4E-17 127.0 3.9 62 1-62 81-142 (412)
10 PF06005 DUF904: Protein of un 82.4 7.8 0.00017 29.1 6.9 34 116-154 1-34 (72)
11 PRK04098 sec-independent trans 75.9 2.1 4.7E-05 36.9 2.4 83 42-135 14-100 (158)
12 PF06698 DUF1192: Protein of u 70.5 9.5 0.00021 27.6 4.3 33 107-139 12-44 (59)
13 smart00787 Spc7 Spc7 kinetocho 68.5 68 0.0015 30.5 10.9 44 99-142 182-227 (312)
14 PF10584 Proteasome_A_N: Prote 60.5 1 2.3E-05 26.6 -1.8 13 44-56 4-16 (23)
15 PHA03155 hypothetical protein; 58.3 66 0.0014 26.4 7.5 59 81-139 7-65 (115)
16 PF05812 Herpes_BLRF2: Herpesv 58.2 59 0.0013 26.8 7.3 57 83-139 4-64 (118)
17 PF12347 HJURP_C: Holliday jun 57.5 3.4 7.5E-05 30.3 0.0 40 135-174 19-58 (64)
18 PHA03162 hypothetical protein; 57.3 68 0.0015 27.0 7.5 58 82-139 13-74 (135)
19 PHA02562 46 endonuclease subun 56.7 96 0.0021 30.9 10.2 35 153-192 285-319 (562)
20 PF07106 TBPIP: Tat binding pr 56.7 50 0.0011 28.0 7.1 53 86-139 113-165 (169)
21 KOG4797 Transcriptional regula 53.7 95 0.0021 25.4 7.6 31 124-154 46-76 (123)
22 PF08317 Spc7: Spc7 kinetochor 53.3 1.7E+02 0.0036 27.7 10.6 44 111-154 201-246 (325)
23 PF10498 IFT57: Intra-flagella 53.2 91 0.002 30.3 9.0 78 119-217 241-318 (359)
24 PF08700 Vps51: Vps51/Vps67; 47.9 80 0.0017 23.3 6.2 66 57-129 1-68 (87)
25 PRK01371 sec-independent trans 47.3 9.4 0.0002 32.2 1.0 53 42-121 14-66 (137)
26 PRK10884 SH3 domain-containing 47.1 1.5E+02 0.0033 26.5 8.8 63 87-154 91-155 (206)
27 COG1322 Predicted nuclease of 45.7 2.3E+02 0.005 28.5 10.6 17 226-242 200-216 (448)
28 PF08614 ATG16: Autophagy prot 42.2 1.7E+02 0.0036 25.5 8.2 18 182-199 168-185 (194)
29 KOG4302 Microtubule-associated 41.6 4.5E+02 0.0096 27.9 12.3 97 112-219 283-383 (660)
30 COG3853 TelA Uncharacterized p 41.0 2.3E+02 0.005 28.0 9.6 35 165-199 233-267 (386)
31 PF15372 DUF4600: Domain of un 39.9 99 0.0021 25.9 6.0 53 78-130 4-65 (129)
32 PF10504 DUF2452: Protein of u 39.5 1E+02 0.0023 26.7 6.2 38 117-154 28-68 (159)
33 KOG0804 Cytoplasmic Zn-finger 39.3 2E+02 0.0044 29.0 9.0 37 131-194 375-411 (493)
34 TIGR03752 conj_TIGR03752 integ 38.7 2.6E+02 0.0057 28.3 9.8 34 63-102 60-93 (472)
35 PF10211 Ax_dynein_light: Axon 38.5 2.7E+02 0.0059 24.3 9.3 35 120-154 145-179 (189)
36 PF04645 DUF603: Protein of un 37.8 2.8E+02 0.0061 24.5 8.6 60 90-150 106-169 (181)
37 PF12252 SidE: Dot/Icm substra 37.1 2.3E+02 0.005 31.8 9.5 70 82-152 1124-1193(1439)
38 KOG3759 Uncharacterized RUN do 36.2 1.9E+02 0.0041 29.5 8.2 58 92-154 180-243 (621)
39 PF07926 TPR_MLP1_2: TPR/MLP1/ 35.9 2.4E+02 0.0052 23.0 8.4 31 134-192 95-125 (132)
40 KOG1962 B-cell receptor-associ 34.2 2.3E+02 0.0049 25.8 7.8 46 92-137 130-176 (216)
41 PRK15422 septal ring assembly 34.1 2.2E+02 0.0047 21.9 7.0 34 116-154 1-34 (79)
42 PF09730 BicD: Microtubule-ass 33.7 2.7E+02 0.0058 29.7 9.4 34 182-219 100-133 (717)
43 PRK03918 chromosome segregatio 33.5 3.7E+02 0.008 28.5 10.6 35 38-72 120-155 (880)
44 COG2433 Uncharacterized conser 32.8 3.1E+02 0.0066 28.8 9.3 56 90-154 430-490 (652)
45 PHA02592 52 DNA topisomerase I 32.7 5.2E+02 0.011 25.9 12.0 28 43-74 299-326 (439)
46 PF14662 CCDC155: Coiled-coil 32.4 3.7E+02 0.008 24.1 9.1 17 203-219 112-128 (193)
47 KOG0982 Centrosomal protein Nu 32.0 2.5E+02 0.0054 28.3 8.2 104 118-230 348-472 (502)
48 COG3883 Uncharacterized protei 31.9 3.7E+02 0.0081 25.1 9.1 36 118-154 79-114 (265)
49 COG4467 Regulator of replicati 31.2 1.4E+02 0.0031 24.3 5.4 25 118-142 7-31 (114)
50 PF06156 DUF972: Protein of un 30.9 2.2E+02 0.0048 22.8 6.6 22 118-139 7-28 (107)
51 COG5415 Predicted integral mem 30.6 2.4E+02 0.0052 25.8 7.3 86 119-217 15-136 (251)
52 PF14009 DUF4228: Domain of un 30.2 40 0.00087 27.9 2.3 33 40-74 14-46 (181)
53 PF07888 CALCOCO1: Calcium bin 29.9 4.1E+02 0.009 27.4 9.7 144 31-216 78-236 (546)
54 PF09403 FadA: Adhesion protei 29.4 2.8E+02 0.006 23.0 7.1 10 65-74 23-32 (126)
55 PF02183 HALZ: Homeobox associ 29.2 54 0.0012 22.3 2.3 28 81-108 11-38 (45)
56 PF10186 Atg14: UV radiation r 29.1 3.4E+02 0.0073 24.3 8.3 24 87-110 25-48 (302)
57 TIGR02231 conserved hypothetic 28.6 3.8E+02 0.0083 26.9 9.3 40 114-154 122-161 (525)
58 PRK13169 DNA replication intia 28.4 2.5E+02 0.0054 22.7 6.5 25 118-142 7-31 (110)
59 KOG4445 Uncharacterized conser 28.4 2E+02 0.0044 27.7 6.7 94 40-139 117-219 (368)
60 PF01166 TSC22: TSC-22/dip/bun 28.3 72 0.0016 23.2 2.9 25 141-192 17-41 (59)
61 PF07106 TBPIP: Tat binding pr 28.2 2.8E+02 0.0062 23.3 7.2 57 82-142 79-135 (169)
62 PRK11637 AmiB activator; Provi 27.8 5.7E+02 0.012 24.9 10.2 15 121-135 77-91 (428)
63 TIGR02168 SMC_prok_B chromosom 27.4 7.8E+02 0.017 26.5 12.0 54 47-102 139-192 (1179)
64 KOG2417 Predicted G-protein co 27.0 3E+02 0.0066 27.2 7.7 77 51-149 129-216 (462)
65 TIGR02894 DNA_bind_RsfA transc 26.6 4.3E+02 0.0093 23.0 8.7 52 113-192 77-131 (161)
66 PF04697 Pinin_SDK_N: pinin/SD 26.2 78 0.0017 26.6 3.2 35 85-119 6-40 (134)
67 PF08432 Vfa1: AAA-ATPase Vps4 26.0 85 0.0018 27.3 3.6 23 39-61 11-41 (182)
68 KOG4302 Microtubule-associated 26.0 2.8E+02 0.0061 29.3 7.9 123 25-160 63-196 (660)
69 KOG4603 TBP-1 interacting prot 25.8 4.7E+02 0.01 23.2 8.2 115 33-149 42-181 (201)
70 COG3074 Uncharacterized protei 25.6 2.8E+02 0.0061 21.0 5.7 34 116-154 1-34 (79)
71 PF05529 Bap31: B-cell recepto 25.4 2.7E+02 0.0058 24.0 6.7 76 67-188 116-191 (192)
72 TIGR02338 gimC_beta prefoldin, 24.8 3.5E+02 0.0075 21.3 8.0 30 124-154 61-90 (110)
73 PLN03230 acetyl-coenzyme A car 24.0 2.8E+02 0.006 27.8 7.1 76 53-135 38-121 (431)
74 PF10367 Vps39_2: Vacuolar sor 24.0 3.1E+02 0.0067 20.6 6.2 10 155-164 81-90 (109)
75 PRK09343 prefoldin subunit bet 23.8 1.8E+02 0.004 23.5 5.0 28 126-154 67-94 (121)
76 COG0139 HisI Phosphoribosyl-AM 23.7 13 0.00028 30.3 -1.8 37 17-53 50-95 (111)
77 PRK10884 SH3 domain-containing 23.0 3.6E+02 0.0079 24.0 7.1 11 182-192 135-145 (206)
78 COG4917 EutP Ethanolamine util 22.8 64 0.0014 27.4 2.1 24 35-58 59-82 (148)
79 TIGR03185 DNA_S_dndD DNA sulfu 22.4 8.8E+02 0.019 25.1 12.3 22 85-106 394-415 (650)
80 KOG0972 Huntingtin interacting 22.1 3.2E+02 0.007 26.3 6.8 92 119-231 248-343 (384)
81 PF09941 DUF2173: Uncharacteri 21.8 66 0.0014 26.1 1.9 27 32-59 3-29 (108)
82 PLN02372 violaxanthin de-epoxi 21.7 4.2E+02 0.0091 26.6 7.7 43 91-145 363-405 (455)
83 PF01502 PRA-CH: Phosphoribosy 21.6 15 0.00033 27.9 -1.6 35 19-53 20-63 (75)
84 cd00187 TOP4c DNA Topoisomeras 21.4 4.2E+02 0.0091 26.5 7.9 59 7-74 257-327 (445)
85 TIGR02894 DNA_bind_RsfA transc 21.3 4.7E+02 0.01 22.7 7.2 47 60-106 78-128 (161)
86 PF09789 DUF2353: Uncharacteri 21.1 7.5E+02 0.016 23.8 12.1 155 20-197 34-207 (319)
87 PF04977 DivIC: Septum formati 21.1 1.1E+02 0.0023 22.1 2.9 27 82-108 24-50 (80)
88 PF04849 HAP1_N: HAP1 N-termin 21.0 4.8E+02 0.011 24.9 7.8 29 82-110 160-188 (306)
89 PF09278 MerR-DNA-bind: MerR, 20.7 2E+02 0.0044 19.9 4.2 11 115-125 14-24 (65)
90 PRK03918 chromosome segregatio 20.6 1E+03 0.022 25.2 11.1 15 116-130 656-670 (880)
91 PF06009 Laminin_II: Laminin D 20.6 25 0.00054 29.2 -0.8 62 116-182 59-124 (138)
92 KOG3048 Molecular chaperone Pr 20.4 3.3E+02 0.0071 23.4 5.9 34 110-143 7-40 (153)
93 PF05816 TelA: Toxic anion res 20.1 7.5E+02 0.016 23.4 11.7 34 166-199 187-220 (333)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=1.4e-36 Score=263.92 Aligned_cols=154 Identities=34% Similarity=0.507 Sum_probs=123.4
Q ss_pred CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcccccc
Q 024093 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW 80 (272)
Q Consensus 1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~~~l~ 80 (272)
|||+||+|+||+|.++|||||||||+||||||+||||||||+||||||||+|++|+|++|+.++..+++||......+..
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999976799999999886542211
Q ss_pred c-----hhh---------------hh-----hhhhhhHHHHHHHHHH---HHHHhhccCcCCCCCH-HHHHHHHHHHHHh
Q 024093 81 S-----SHY---------------EK-----MLENLGAVEQVNRILK---KQIRQRMGESLNDLTL-EELTGLEQDILDG 131 (272)
Q Consensus 81 ~-----~~~---------------Ek-----lqeeL~kLKe~n~~Lr---keiRql~GedL~~LSl-eEL~~LEq~LE~s 131 (272)
. ... +. .......++...+.+. ...+++.|+++.+++. ++|..++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 0 000 00 1111222333344443 3367899999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhcc
Q 024093 132 LKIIHECKDQVLARQIN-TFKRKV 154 (272)
Q Consensus 132 L~~VR~RK~qli~~Qi~-~lkkK~ 154 (272)
+..+|..+...+.+++. .++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~ 184 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKE 184 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccc
Confidence 99999999888887765 445444
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=2.2e-32 Score=207.59 Aligned_cols=77 Identities=62% Similarity=0.998 Sum_probs=74.4
Q ss_pred CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcccccc
Q 024093 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW 80 (272)
Q Consensus 2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~~~l~ 80 (272)
||+||+|++|||+.+|++||+||++||||||+||||||||+||+|||||+|++|+|+||+ +++|++||++.++.++|
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~~ 77 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSLW 77 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhccccccC
Confidence 899999999999999999999999999999999999999999999999999999999997 48999999999988776
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=1e-28 Score=189.98 Aligned_cols=74 Identities=42% Similarity=0.685 Sum_probs=70.7
Q ss_pred CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcc
Q 024093 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (272)
Q Consensus 2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~ 76 (272)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|+.+.|++++. +..++++|...+.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~ 74 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSA 74 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCH
Confidence 8999999999999999999999999999999999999999999999999999999988875 8999999988764
No 4
>smart00432 MADS MADS domain.
Probab=99.95 E-value=2e-28 Score=176.96 Aligned_cols=59 Identities=68% Similarity=1.042 Sum_probs=58.2
Q ss_pred CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCC
Q 024093 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60 (272)
Q Consensus 2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sp 60 (272)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999987
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=1.5e-27 Score=172.47 Aligned_cols=59 Identities=64% Similarity=1.014 Sum_probs=57.8
Q ss_pred CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCC
Q 024093 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60 (272)
Q Consensus 2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sp 60 (272)
||+||+|++|+|+..|++||+|||.||||||+||||||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999875
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.91 E-value=1.1e-25 Score=158.03 Aligned_cols=51 Identities=51% Similarity=0.812 Sum_probs=46.9
Q ss_pred EEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccC
Q 024093 9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59 (272)
Q Consensus 9 krIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~s 59 (272)
|+|+|++.|++||+|||.||||||+|||+||||+||+|||||+|++|.|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999976
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.78 E-value=1e-18 Score=138.36 Aligned_cols=96 Identities=39% Similarity=0.627 Sum_probs=93.8
Q ss_pred HhhhccccccchhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024093 71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTF 150 (272)
Q Consensus 71 Yq~~s~~~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~l 150 (272)
|++.++.+.|..+++.++.++.+++.+++.|+..+|+++|+||++||++||..||++|+.||.+||+||++++.++|+++
T Consensus 1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l 80 (100)
T PF01486_consen 1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEEL 80 (100)
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhhh
Q 024093 151 KRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQD 193 (272)
Q Consensus 151 kkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~ 193 (272)
++|+ +.+.++|..|++
T Consensus 81 ~~ke---------------------------~~l~~en~~L~~ 96 (100)
T PF01486_consen 81 KKKE---------------------------RELEEENNQLRQ 96 (100)
T ss_pred HHHH---------------------------HHHHHHHHHHHH
Confidence 9999 999999999993
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.69 E-value=5.3e-18 Score=155.58 Aligned_cols=76 Identities=37% Similarity=0.539 Sum_probs=67.6
Q ss_pred CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcc-------hhhhhHHHHhhh
Q 024093 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPST-------TTKQLLDLYQKT 74 (272)
Q Consensus 2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~-------~~kkIidRYq~~ 74 (272)
||.||+|++|||+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|.|++|-. +=+.+|.-..+.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999999999999853 125667666666
Q ss_pred ccc
Q 024093 75 LRV 77 (272)
Q Consensus 75 s~~ 77 (272)
++.
T Consensus 143 pd~ 145 (338)
T KOG0015|consen 143 PDT 145 (338)
T ss_pred CCC
Confidence 543
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.33 E-value=6.3e-13 Score=126.97 Aligned_cols=62 Identities=37% Similarity=0.570 Sum_probs=60.3
Q ss_pred CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcc
Q 024093 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPST 62 (272)
Q Consensus 1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~ 62 (272)
|||+||.|..|+|+++|.|||+||+.||+|||.||+||.|.+|.+++.|.+|+++.|++|..
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~ 142 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKL 142 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999863
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=82.42 E-value=7.8 Score=29.08 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 116 LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
+|++.|..||..+..++..|.. +..+++.|+.+.
T Consensus 1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n 34 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKN 34 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 5788999999999999998864 445566777765
No 11
>PRK04098 sec-independent translocase; Provisional
Probab=75.87 E-value=2.1 Score=36.88 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=47.7
Q ss_pred cEEEEEeccCcccccccCCcchhhhhHHHHhhhcccc--ccc--hhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCC
Q 024093 42 KVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVD--LWS--SHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLT 117 (272)
Q Consensus 42 eValIifS~~GKl~e~~sps~~~kkIidRYq~~s~~~--l~~--~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~LS 117 (272)
=||||||+| +|+.+..- ++-+.+..+++....- ..+ -....+++++.+.++..+....++| ..++
T Consensus 14 vVaLlvfGP-~KLP~~~r---~lGk~ir~~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~-------~~~~ 82 (158)
T PRK04098 14 VVAIIFLGP-DKLPQAMV---DIAKFFKAVKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLK-------KKLK 82 (158)
T ss_pred HHHHhhcCc-hHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------hccC
Confidence 478999999 78888754 4567777777764310 000 1122344445555554444443333 2378
Q ss_pred HHHHHHHHHHHHHhHHHH
Q 024093 118 LEELTGLEQDILDGLKII 135 (272)
Q Consensus 118 leEL~~LEq~LE~sL~~V 135 (272)
+++|..+-..+......+
T Consensus 83 ~eel~~~~~~~~~~~~~~ 100 (158)
T PRK04098 83 FEELDDLKITAENEIKSI 100 (158)
T ss_pred hHHHHHHhhhhhhcchhH
Confidence 888888876666644333
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=70.52 E-value=9.5 Score=27.65 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=27.4
Q ss_pred hhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 024093 107 QRMGESLNDLTLEELTGLEQDILDGLKIIHECK 139 (272)
Q Consensus 107 ql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK 139 (272)
+..|+||+.||++||..--..|+.=+.++++-.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999998888887777776643
No 13
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=68.51 E-value=68 Score=30.51 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=30.7
Q ss_pred HHHHHHHHhhc--cCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024093 99 RILKKQIRQRM--GESLNDLTLEELTGLEQDILDGLKIIHECKDQV 142 (272)
Q Consensus 99 ~~LrkeiRql~--GedL~~LSleEL~~LEq~LE~sL~~VR~RK~ql 142 (272)
..|+.+++++. -.+++.++.++|..+...|..-...|...+..+
T Consensus 182 ~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 182 DALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 347888899999999988888888777766554
No 14
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=60.52 E-value=1 Score=26.63 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=10.2
Q ss_pred EEEEeccCccccc
Q 024093 44 SILICSSTAKAHE 56 (272)
Q Consensus 44 alIifS~~GKl~e 56 (272)
++.+|||.|+++.
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 4568999999874
No 15
>PHA03155 hypothetical protein; Provisional
Probab=58.27 E-value=66 Score=26.38 Aligned_cols=59 Identities=20% Similarity=0.196 Sum_probs=44.5
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 024093 81 SSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECK 139 (272)
Q Consensus 81 ~~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK 139 (272)
+...|.|..+|.+|+=+|..|++.+++-.+.+-.-|+..+=..+-.....+|...-++|
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999988766655566888887777766666666555444
No 16
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=58.24 E-value=59 Score=26.83 Aligned_cols=57 Identities=23% Similarity=0.266 Sum_probs=40.1
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcc----CcCCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 024093 83 HYEKMLENLGAVEQVNRILKKQIRQRMG----ESLNDLTLEELTGLEQDILDGLKIIHECK 139 (272)
Q Consensus 83 ~~EklqeeL~kLKe~n~~LrkeiRql~G----edL~~LSleEL~~LEq~LE~sL~~VR~RK 139 (272)
.+|.|..+|.+|+=+|..|++.+++-.| .+-.-|+..+=..+-...-.+|...-.+|
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998887 55666888877776666666655554443
No 17
>PF12347 HJURP_C: Holliday junction regulator protein family C-terminal repeat; InterPro: IPR022102 Although this family is conserved in the Holliday junction regulator, HJURP, proteins in higher eukaryotes, alongside an Scm3, PF10384 from PFAM, family, its exact function is not known. The C-terminal region of Scm3 proteins has been evolving rapidly, and this short repeat at the C-terminal end can be present in up to two copies in the higher eukaryotes. ; PDB: 3P57_A 3KOV_A.
Probab=57.46 E-value=3.4 Score=30.26 Aligned_cols=40 Identities=10% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccccccchhhHhh
Q 024093 135 IHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILL 174 (272)
Q Consensus 135 VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~ 174 (272)
-.+-|+.-|.++++.|-++-|..+++|++++.+.++|+|.
T Consensus 19 ~~e~kY~eI~eeFD~l~q~y~~~~~~~p~~~~mp~svpVs 58 (64)
T PF12347_consen 19 RTENKYREINEEFDKLHQRYCLSPGKPPQNFSMPVSVPVS 58 (64)
T ss_dssp ----------------------------------------
T ss_pred chhhHHHHHHHHHHHHHHHhCCCCCCCCCccCCCcceecc
Confidence 3456788899999999999988889999999999999885
No 18
>PHA03162 hypothetical protein; Provisional
Probab=57.28 E-value=68 Score=26.98 Aligned_cols=58 Identities=17% Similarity=0.158 Sum_probs=42.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhccCc----CCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 024093 82 SHYEKMLENLGAVEQVNRILKKQIRQRMGES----LNDLTLEELTGLEQDILDGLKIIHECK 139 (272)
Q Consensus 82 ~~~EklqeeL~kLKe~n~~LrkeiRql~Ged----L~~LSleEL~~LEq~LE~sL~~VR~RK 139 (272)
...|.|..+|.+|+=+|..|++.+++-.|.+ -..|+..+=..+-.....+|...-.+|
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK 74 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK 74 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999998877765 234777777666666665555554444
No 19
>PHA02562 46 endonuclease subunit; Provisional
Probab=56.74 E-value=96 Score=30.93 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=20.7
Q ss_pred cccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhh
Q 024093 153 KVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQ 192 (272)
Q Consensus 153 K~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 192 (272)
..|+.|+.++.+- .-.+...+.++..++.+...+.
T Consensus 285 ~~Cp~C~~~~~~~-----~~~~~~l~d~i~~l~~~l~~l~ 319 (562)
T PHA02562 285 GVCPTCTQQISEG-----PDRITKIKDKLKELQHSLEKLD 319 (562)
T ss_pred CCCCCCCCcCCCc-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999775 3333333445555555544444
No 20
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=56.71 E-value=50 Score=28.04 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=32.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHH
Q 024093 86 KMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECK 139 (272)
Q Consensus 86 klqeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK 139 (272)
.|...+..++.++..|+..+..+.+ +-...+.+|...++.......+..+.||
T Consensus 113 el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 113 ELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555444 3334667777777777777777766666
No 21
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=53.70 E-value=95 Score=25.37 Aligned_cols=31 Identities=6% Similarity=0.298 Sum_probs=20.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 124 LEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 124 LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
+...++.+++-|+..-+-...++++.||.++
T Consensus 46 IDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI 76 (123)
T KOG4797|consen 46 IDNKIEQAMDLVKTHLMFAVREEVEVLKEQI 76 (123)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666667777777777
No 22
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=53.34 E-value=1.7e+02 Score=27.74 Aligned_cols=44 Identities=20% Similarity=0.374 Sum_probs=31.3
Q ss_pred CcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHhcc
Q 024093 111 ESLNDLTLEELTGLEQDILDGLKIIHECKDQVLA--RQINTFKRKV 154 (272)
Q Consensus 111 edL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~--~Qi~~lkkK~ 154 (272)
..++.++.++|..+...|...-..|.++|..+-. .+...++.++
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999888888877766532 3334444444
No 23
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=53.16 E-value=91 Score=30.28 Aligned_cols=78 Identities=22% Similarity=0.285 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhhhhhhhh
Q 024093 119 EELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSK 198 (272)
Q Consensus 119 eEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (272)
..|..|...+..+|.+|..|-. .|.+|++.+...-. --...+..+++..+.+..++-..
T Consensus 241 ~~L~kl~~~i~~~lekI~sREk-~iN~qle~l~~eYr--------------------~~~~~ls~~~~~y~~~s~~V~~~ 299 (359)
T PF10498_consen 241 SQLDKLQQDISKTLEKIESREK-YINNQLEPLIQEYR--------------------SAQDELSEVQEKYKQASEGVSER 299 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHH--------------------HHHHHHHHHHHHHHHHhhHHHHH
Confidence 4677788899999999988754 44777776654440 00011233444445555444445
Q ss_pred ccccchhhhhhHHHHHHhh
Q 024093 199 ISCLSSIFLITEDIKQRIK 217 (272)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~ 217 (272)
...|+.+...-+.|++.++
T Consensus 300 t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 300 TRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444
No 24
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=47.87 E-value=80 Score=23.35 Aligned_cols=66 Identities=14% Similarity=0.190 Sum_probs=38.9
Q ss_pred ccCCcchhhhhHHHHhhhccccccchhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCC--CHHHHHHHHHHHH
Q 024093 57 YISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDL--TLEELTGLEQDIL 129 (272)
Q Consensus 57 ~~sps~~~kkIidRYq~~s~~~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~L--SleEL~~LEq~LE 129 (272)
|.+|+.+++..+..+-.... ...+..-..+|...+...+.+++...|.+-.++ ..+++..++..+.
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s-------~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~ 68 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSS-------IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLS 68 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665544322 234445556667777777788888887653332 3456666665554
No 25
>PRK01371 sec-independent translocase; Provisional
Probab=47.33 E-value=9.4 Score=32.24 Aligned_cols=53 Identities=17% Similarity=0.345 Sum_probs=30.6
Q ss_pred cEEEEEeccCcccccccCCcchhhhhHHHHhhhccccccchhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHH
Q 024093 42 KVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 121 (272)
Q Consensus 42 eValIifS~~GKl~e~~sps~~~kkIidRYq~~s~~~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL 121 (272)
=|+||||+| .|+.++.- ++.+.+..+ ++.....+.+++.-+|.+++++.+.+|
T Consensus 14 vVallvfGP-eKLP~~ar---~lg~~ir~~-----------------------R~~~~~ak~~i~~Elg~ef~d~d~r~l 66 (137)
T PRK01371 14 VLAVLVFGP-DKLPKAAR---DAGRTLRQL-----------------------REMANNARNDLRSELGPEFADLDLRDL 66 (137)
T ss_pred HHHhheeCc-hHHHHHHH---HHHHHHHHH-----------------------HHHHHHHHHHHHHHhcchhcccchhhc
Confidence 367899998 67666532 223333333 333344555666667888887754443
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=47.13 E-value=1.5e+02 Score=26.50 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=31.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHhcc
Q 024093 87 MLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIH--ECKDQVLARQINTFKRKV 154 (272)
Q Consensus 87 lqeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR--~RK~qli~~Qi~~lkkK~ 154 (272)
+...+.+++.++..++.++....++ .+ ....++.+.+..+-..+. ...++-+.+|+..++.+.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~-~~----~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNT-WN----QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443322 11 333344444444333333 334555577777777777
No 27
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=45.72 E-value=2.3e+02 Score=28.46 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=9.3
Q ss_pred HHHHHHhhccCCCCCcc
Q 024093 226 VFIQIINAKEEDPHYEY 242 (272)
Q Consensus 226 ~~~~~~~~~~~~~~~~~ 242 (272)
+.-++++.....+.|.|
T Consensus 200 ~Le~ILe~~gl~~~~ey 216 (448)
T COG1322 200 QLERILEDSGLREGYEY 216 (448)
T ss_pred HHHHHHHHhCchhccce
Confidence 34456665555555654
No 28
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=42.22 E-value=1.7e+02 Score=25.48 Aligned_cols=18 Identities=22% Similarity=0.534 Sum_probs=14.8
Q ss_pred hhhHHHhhhhhhhhhhhc
Q 024093 182 RGVQKENKSLQDGFVSKI 199 (272)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~ 199 (272)
+.+++||..|.+.++.++
T Consensus 168 ~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 168 RKLEEENRELVERWMQRK 185 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999997766544
No 29
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=41.65 E-value=4.5e+02 Score=27.88 Aligned_cols=97 Identities=15% Similarity=0.256 Sum_probs=52.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccccccccccc--cccchhhHhhhh--hhhhhhhhHHH
Q 024093 112 SLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKT--YDSSLSFILLFV--GNFQVRGVQKE 187 (272)
Q Consensus 112 dL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~--~~~s~~~~~~~~--~~~~~~~~~~~ 187 (272)
.-+.||.+=+.+.|..++ -|..++.. .|.+=|...+......|....-. .++...+++++- |+.++-.+.+.
T Consensus 283 ~~~~ls~d~I~~ve~Ev~-Rl~qlK~s---~mKeli~k~r~Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~ 358 (660)
T KOG4302|consen 283 EPNSLSLDIIEQVEKEVD-RLEQLKAS---NMKELIEKKRSELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLEN 358 (660)
T ss_pred ccccccHHHHHHHHHHHH-HHHHHHHH---hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 456788888888776665 33344333 34444555555444444433333 477777777775 76665554433
Q ss_pred hhhhhhhhhhhccccchhhhhhHHHHHHhhhh
Q 024093 188 NKSLQDGFVSKISCLSSIFLITEDIKQRIKTF 219 (272)
Q Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (272)
+..+|+....-..+...|..++.++
T Consensus 359 -------~d~~i~k~keea~srk~il~~ve~W 383 (660)
T KOG4302|consen 359 -------IDNLIKKYKEEALSRKEILERVEKW 383 (660)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333344444555555555533
No 30
>COG3853 TelA Uncharacterized protein involved in tellurite resistance [Inorganic ion transport and metabolism]
Probab=41.02 E-value=2.3e+02 Score=27.98 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=26.6
Q ss_pred cccchhhHhhhhhhhhhhhhHHHhhhhhhhhhhhc
Q 024093 165 YDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSKI 199 (272)
Q Consensus 165 ~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (272)
+|-..+.-|..=|--|+|.+++-|..|.+|..+-+
T Consensus 233 ~Dl~~a~~Va~Q~apqirliq~~N~~L~~kI~sa~ 267 (386)
T COG3853 233 YDLLLARMVALQTAPQIRLIQRNNQELIEKIQSAI 267 (386)
T ss_pred HHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHHH
Confidence 45555556677788899999999999997766543
No 31
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=39.95 E-value=99 Score=25.89 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=38.0
Q ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHhhccCc---------CCCCCHHHHHHHHHHHHH
Q 024093 78 DLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGES---------LNDLTLEELTGLEQDILD 130 (272)
Q Consensus 78 ~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~Ged---------L~~LSleEL~~LEq~LE~ 130 (272)
+-|...||-..+--+.|++++..|+..+-+..|.+ .+.|+.+.|..|-.+|+.
T Consensus 4 nEWktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEk 65 (129)
T PF15372_consen 4 NEWKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEK 65 (129)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHH
Confidence 45777887666666667777777777776666642 367888888888888874
No 32
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=39.46 E-value=1e+02 Score=26.66 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHhcc
Q 024093 117 TLEELTGLEQDILDGLKIIHEC---KDQVLARQINTFKRKV 154 (272)
Q Consensus 117 SleEL~~LEq~LE~sL~~VR~R---K~qli~~Qi~~lkkK~ 154 (272)
+..||..|-++++.+..-+|++ |-.+|.+||..|++.-
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA 68 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQA 68 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6788999999998888888875 6677888888888766
No 33
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=39.27 E-value=2e+02 Score=28.99 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhhhh
Q 024093 131 GLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDG 194 (272)
Q Consensus 131 sL~~VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~ 194 (272)
+.+.+-++|.+.+.+.++.+.+.. ..++|+|+.|.+.
T Consensus 375 ~~kk~~e~k~~q~q~k~~k~~kel---------------------------~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 375 AEKKIVERKLQQLQTKLKKCQKEL---------------------------KEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHhh
Confidence 334455566666677777777766 8888888888743
No 34
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.68 E-value=2.6e+02 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.238 Sum_probs=14.5
Q ss_pred hhhhhHHHHhhhccccccchhhhhhhhhhhHHHHHHHHHH
Q 024093 63 TTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILK 102 (272)
Q Consensus 63 ~~kkIidRYq~~s~~~l~~~~~EklqeeL~kLKe~n~~Lr 102 (272)
++..++.+.+.+ ..+.+.+..+-+.|+++|+.|+
T Consensus 60 TlrTlva~~k~~------r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 60 TLRTLVAEVKEL------RKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 2233333344444444444443
No 35
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=38.49 E-value=2.7e+02 Score=24.34 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 120 ELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 120 EL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
+|..-...++......++-..+...++++.|++..
T Consensus 145 ~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~ 179 (189)
T PF10211_consen 145 ELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQN 179 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444454555555555566677777777655
No 36
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=37.83 E-value=2.8e+02 Score=24.46 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=37.6
Q ss_pred hhhHHHHHHHHHHHHHHhhcc----CcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024093 90 NLGAVEQVNRILKKQIRQRMG----ESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTF 150 (272)
Q Consensus 90 eL~kLKe~n~~LrkeiRql~G----edL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~l 150 (272)
+|...++++..|+.+|..+-- .+-.++ -+++..|+..|.+..+.--.|+++|+-+-+..|
T Consensus 106 eL~s~~~ei~~L~~kI~~L~~~in~~~k~~~-n~~i~slk~EL~d~iKe~e~~emeLyyecMkkL 169 (181)
T PF04645_consen 106 ELKSIKKEIEILRLKISSLQKEINKNKKKDL-NEEIESLKSELNDLIKEREIREMELYYECMKKL 169 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555554433321 111111 136899999999999988889999988666555
No 37
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=37.07 E-value=2.3e+02 Score=31.81 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=46.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 024093 82 SHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKR 152 (272)
Q Consensus 82 ~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkk 152 (272)
..+.+.-..+..|++++..|+.+- -+|..+-+..++.+...||++|...-..+-.-=---+..||..|.+
T Consensus 1124 ~~ikK~ia~lnnlqqElklLRnEK-~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~ 1193 (1439)
T PF12252_consen 1124 DSIKKAIANLNNLQQELKLLRNEK-IRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEK 1193 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-HhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 344555566777888888887763 3455555668899999999998876666544433334456777765
No 38
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=36.16 E-value=1.9e+02 Score=29.45 Aligned_cols=58 Identities=24% Similarity=0.385 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHH---HHHHHH---HHHHHHHHHhcc
Q 024093 92 GAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIH---ECKDQV---LARQINTFKRKV 154 (272)
Q Consensus 92 ~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR---~RK~ql---i~~Qi~~lkkK~ 154 (272)
++.|-..++|+..+. +.-+++.||-+||+. +++++++.+- .-|.++ +.+||..|.+=+
T Consensus 180 ekQk~ilDeLr~Kl~--lnl~i~~lsteelr~---qVD~A~~q~VnP~k~KeQLV~QLkTQItDLErFI 243 (621)
T KOG3759|consen 180 EKQKAILDELREKLE--LNLDIDKLSTEELRR---QVDDALKQLVNPFKEKEQLVDQLKTQITDLERFI 243 (621)
T ss_pred HHHHHHHHHHHHHhh--ccCCcccccHHHHHH---HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443332 233588999999876 8888887543 224443 457777666544
No 39
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=35.91 E-value=2.4e+02 Score=22.98 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhh
Q 024093 134 IIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQ 192 (272)
Q Consensus 134 ~VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 192 (272)
.--.+|. .+..+++.++++. ..|.+.|+-|+
T Consensus 95 sw~~qk~-~le~e~~~~~~r~---------------------------~dL~~QN~lLh 125 (132)
T PF07926_consen 95 SWEEQKE-QLEKELSELEQRI---------------------------EDLNEQNKLLH 125 (132)
T ss_pred hHHHHHH-HHHHHHHHHHHHH---------------------------HHHHHHHHHHH
Confidence 3334443 4477888888888 99999999998
No 40
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.19 E-value=2.3e+02 Score=25.80 Aligned_cols=46 Identities=26% Similarity=0.272 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHhhcc-CcCCCCCHHHHHHHHHHHHHhHHHHHH
Q 024093 92 GAVEQVNRILKKQIRQRMG-ESLNDLTLEELTGLEQDILDGLKIIHE 137 (272)
Q Consensus 92 ~kLKe~n~~LrkeiRql~G-edL~~LSleEL~~LEq~LE~sL~~VR~ 137 (272)
++..+++..+++....-.. +.=++-..+|+..|+..++..-+....
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~ 176 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEK 176 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3344466665544332221 111123355677777766655544433
No 41
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.12 E-value=2.2e+02 Score=21.92 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 116 LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
+|++=|.+||..+..++..|- ++.-+|+.||.|-
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn 34 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKN 34 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 578889999999999998874 5556677777766
No 42
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=33.73 E-value=2.7e+02 Score=29.74 Aligned_cols=34 Identities=32% Similarity=0.412 Sum_probs=17.8
Q ss_pred hhhHHHhhhhhhhhhhhccccchhhhhhHHHHHHhhhh
Q 024093 182 RGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKTF 219 (272)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (272)
-.|++||-+|+ .+|+.|...+.--+-++-.|++.
T Consensus 100 selEeENislQ----Kqvs~Lk~sQvefE~~Khei~rl 133 (717)
T PF09730_consen 100 SELEEENISLQ----KQVSVLKQSQVEFEGLKHEIKRL 133 (717)
T ss_pred HHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHH
Confidence 44566666666 45555555555544444444443
No 43
>PRK03918 chromosome segregation protein; Provisional
Probab=33.55 E-value=3.7e+02 Score=28.47 Aligned_cols=35 Identities=9% Similarity=0.064 Sum_probs=20.7
Q ss_pred hcCCcEE-EEEeccCcccccccCCcchhhhhHHHHh
Q 024093 38 LCDAKVS-ILICSSTAKAHEYISPSTTTKQLLDLYQ 72 (272)
Q Consensus 38 LCDaeVa-lIifS~~GKl~e~~sps~~~kkIidRYq 72 (272)
+.+.++- =.||-|.|.+..|..+...-+++|++-.
T Consensus 120 ~~~~~~f~~~~~~~Qg~~~~~~~~~~~r~~~~~~~~ 155 (880)
T PRK03918 120 LIPYHVFLNAIYIRQGEIDAILESDESREKVVRQIL 155 (880)
T ss_pred hcCHHHhceeEEEeccchHHHhcCcHHHHHHHHHHh
Confidence 4555532 2356678999888754344556666553
No 44
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=32.76 E-value=3.1e+02 Score=28.84 Aligned_cols=56 Identities=16% Similarity=0.292 Sum_probs=29.4
Q ss_pred hhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHhcc
Q 024093 90 NLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIH-----ECKDQVLARQINTFKRKV 154 (272)
Q Consensus 90 eL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR-----~RK~qli~~Qi~~lkkK~ 154 (272)
.+++|+.+|..|+..+..+. +++..|+..|+..-..++ .|+.+.+...|+.|+++.
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 430 TVERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34444455555544443322 456666666665555444 344455556666666655
No 45
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=32.66 E-value=5.2e+02 Score=25.87 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=22.2
Q ss_pred EEEEEeccCcccccccCCcchhhhhHHHHhhh
Q 024093 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (272)
Q Consensus 43 ValIifS~~GKl~e~~sps~~~kkIidRYq~~ 74 (272)
+-+++|.++|++..|.+ +++|++.|-..
T Consensus 299 ~Nm~~~d~~g~~~~~~~----~~~Il~~f~~~ 326 (439)
T PHA02592 299 QNITVINENGKLKVYEN----AEDLIRDFVEI 326 (439)
T ss_pred eeEEEEecCCeeeecCC----HHHHHHHHHHH
Confidence 56788999999888854 46899998665
No 46
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.43 E-value=3.7e+02 Score=24.05 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=7.7
Q ss_pred chhhhhhHHHHHHhhhh
Q 024093 203 SSIFLITEDIKQRIKTF 219 (272)
Q Consensus 203 ~~~~~~~~~~~~~~~~~ 219 (272)
.++..-++.++-+++..
T Consensus 112 ~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 112 GKLLAERDGLKKRSKEL 128 (193)
T ss_pred hHHHHhhhhHHHHHHHH
Confidence 33344444445554444
No 47
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.97 E-value=2.5e+02 Score=28.28 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc------cccccccccccccchhhHhhhhhhhhhh-------hh
Q 024093 118 LEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV------CSVCHIILKTYDSSLSFILLFVGNFQVR-------GV 184 (272)
Q Consensus 118 leEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~------~~~~~~~~~~~~~s~~~~~~~~~~~~~~-------~~ 184 (272)
+.+.+++-..+-..|.++..+|... .+=|+.+++.. ...|.-|-...++..-.++ +--++ .|
T Consensus 348 l~~eq~l~~rm~d~Lrrfq~ekeat-qELieelrkelehlr~~kl~~a~p~rgrsSaRe~el----eqevkrLrq~nr~l 422 (502)
T KOG0982|consen 348 LICEQKLRVRMNDILRRFQEEKEAT-QELIEELRKELEHLRRRKLVLANPVRGRSSAREIEL----EQEVKRLRQPNRIL 422 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHH----HHHHHHhccccchh
Confidence 4456666667777777776666432 22233333221 2345555555554222222 22223 34
Q ss_pred HHHhhhhhhhhhhhccccchhhhhh--------HHHHHHhhhhchhhHHHHHHH
Q 024093 185 QKENKSLQDGFVSKISCLSSIFLIT--------EDIKQRIKTFENNEILVFIQI 230 (272)
Q Consensus 185 ~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 230 (272)
.+.|..|. -+|.-++.-++.+ .-....|...++++.+..++.
T Consensus 423 ~eqneeln----gtilTls~q~lkn~ha~~~~~~Slaaeid~~sqdeLmqafqe 472 (502)
T KOG0982|consen 423 SEQNEELN----GTILTLSTQFLKNWHATFSLFFSLAAEIDEMSQDELMQAFQE 472 (502)
T ss_pred hhhhhhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45555555 4444444433333 345666776677766544443
No 48
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.87 E-value=3.7e+02 Score=25.15 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 118 LEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 118 leEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
-.++..|+..++..-.+|++|+. ++..+...+....
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~-~l~~raRAmq~nG 114 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQE-LLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC
Confidence 45888999999999999999975 4477777666655
No 49
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=31.21 E-value=1.4e+02 Score=24.29 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 024093 118 LEELTGLEQDILDGLKIIHECKDQV 142 (272)
Q Consensus 118 leEL~~LEq~LE~sL~~VR~RK~ql 142 (272)
++.+.+||++|-..++.+-.-|.++
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l 31 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL 31 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777776666555544444
No 50
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=30.92 E-value=2.2e+02 Score=22.82 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 024093 118 LEELTGLEQDILDGLKIIHECK 139 (272)
Q Consensus 118 leEL~~LEq~LE~sL~~VR~RK 139 (272)
++.+.+||++|...+..|.+-|
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK 28 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELK 28 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665554444433
No 51
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=30.57 E-value=2.4e+02 Score=25.77 Aligned_cols=86 Identities=23% Similarity=0.292 Sum_probs=51.0
Q ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhcccccccccccc------------cccchhhHhhhhhh-----
Q 024093 119 EELTGLEQDI---LDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKT------------YDSSLSFILLFVGN----- 178 (272)
Q Consensus 119 eEL~~LEq~L---E~sL~~VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~------------~~~s~~~~~~~~~~----- 178 (272)
.||..||.++ +.+++++++.+.++.. .. .+|++++.. |..-.++.++.+|-
T Consensus 15 ~~L~rle~qi~q~~~~~~~~qs~l~~~~~--------r~-tv~slAl~~l~~S~iy~~~~~y~~~~~It~~llgs~slym 85 (251)
T COG5415 15 ADLSRLESQIHQLDVALKKSQSILSQWQS--------RL-TVYSLALTVLALSYIYWEYHGYRPYLVITALLLGSGSLYM 85 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-hHHHHHHHHHHHHHHHhhccccchhHHHHHHHHhhhHHHH
Confidence 3677777554 4556666666665543 12 457787776 34445556666662
Q ss_pred --------------hhhhhhHHHhhhhhhhhhhhcccc--chhhhhhHHHHHHhh
Q 024093 179 --------------FQVRGVQKENKSLQDGFVSKISCL--SSIFLITEDIKQRIK 217 (272)
Q Consensus 179 --------------~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~ 217 (272)
--.+.|++-+...+ .++..| .+.+.+|..|.+++-
T Consensus 86 frwal~~lye~r~~r~~~~L~kLra~~r----k~l~~LK~e~~y~aT~~ii~ky~ 136 (251)
T COG5415 86 FRWALTKLYEFRNNRRLRKLAKLRAIHR----KKLEKLKEETHYNATSSIIQKYS 136 (251)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhc
Confidence 23344555555555 344444 567888888888773
No 52
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=30.18 E-value=40 Score=27.89 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCcEEEEEeccCcccccccCCcchhhhhHHHHhhh
Q 024093 40 DAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (272)
Q Consensus 40 DaeValIifS~~GKl~e~~sps~~~kkIidRYq~~ 74 (272)
...++-||+ ++|++.+|..| +++.+|+..|-.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~p-v~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRP-VTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCC-cCHHHHHHHCCCC
Confidence 455555666 78999999888 5789999999655
No 53
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=29.92 E-value=4.1e+02 Score=27.45 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHhhhcCCcEEEEEeccCc------ccccccCCcchhhhhH---------HHHhhhccccccchhhhhhhhhhhHHH
Q 024093 31 KARELTILCDAKVSILICSSTA------KAHEYISPSTTTKQLL---------DLYQKTLRVDLWSSHYEKMLENLGAVE 95 (272)
Q Consensus 31 KA~ELSVLCDaeValIifS~~G------Kl~e~~sps~~~kkIi---------dRYq~~s~~~l~~~~~EklqeeL~kLK 95 (272)
+|+.|--.-|-.--+.-++..| .+|.|+.|+ .+..++ |-.--.+...+...+.+..+.+.+.|.
T Consensus 78 ~ayyLPk~~~e~YqfcYv~~~g~V~G~S~pFqf~~~~-p~eeLvtle~e~~~~DmLvV~~ka~~lQ~qlE~~qkE~eeL~ 156 (546)
T PF07888_consen 78 QAYYLPKDDDEFYQFCYVDQKGEVRGASTPFQFRAPK-PLEELVTLEDEDGNSDMLVVTTKAQLLQNQLEECQKEKEELL 156 (546)
T ss_pred CcccCCCCCCCeEEEEEECCCccEEEecCCcccCCCC-ccccceeecccCCCcceEEEehhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHhhh
Q 024093 96 QVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLF 175 (272)
Q Consensus 96 e~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~ 175 (272)
+.+..|+.+. .+|+.--..|+..|...+++-.++ ..+...+....
T Consensus 157 ~~~~~Le~e~-------------~~l~~~v~~l~~eL~~~~ee~e~L-~~~~kel~~~~--------------------- 201 (546)
T PF07888_consen 157 KENEQLEEEV-------------EQLREEVERLEAELEQEEEEMEQL-KQQQKELTESS--------------------- 201 (546)
T ss_pred HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---------------------
Q ss_pred hhhhhhhhhHHHhhhhhhhhhhhccccchhhhhhHHHHHHh
Q 024093 176 VGNFQVRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRI 216 (272)
Q Consensus 176 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (272)
..+.+++..|....-.....+...-.....+.++.
T Consensus 202 ------e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 202 ------EELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 54
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=29.44 E-value=2.8e+02 Score=23.00 Aligned_cols=10 Identities=0% Similarity=-0.084 Sum_probs=5.2
Q ss_pred hhhHHHHhhh
Q 024093 65 KQLLDLYQKT 74 (272)
Q Consensus 65 kkIidRYq~~ 74 (272)
..|..++.+.
T Consensus 23 ~~v~~~l~~L 32 (126)
T PF09403_consen 23 ASVESELNQL 32 (126)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4555555444
No 55
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.21 E-value=54 Score=22.29 Aligned_cols=28 Identities=11% Similarity=0.373 Sum_probs=18.1
Q ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 024093 81 SSHYEKMLENLGAVEQVNRILKKQIRQR 108 (272)
Q Consensus 81 ~~~~EklqeeL~kLKe~n~~LrkeiRql 108 (272)
...|+.+..+.+.|+++|+.|+.++..+
T Consensus 11 K~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 11 KASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777777665443
No 56
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.06 E-value=3.4e+02 Score=24.34 Aligned_cols=24 Identities=17% Similarity=0.354 Sum_probs=12.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcc
Q 024093 87 MLENLGAVEQVNRILKKQIRQRMG 110 (272)
Q Consensus 87 lqeeL~kLKe~n~~LrkeiRql~G 110 (272)
++..+..++..++.|+.++...+.
T Consensus 25 ~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 25 LRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666655544443
No 57
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=28.57 E-value=3.8e+02 Score=26.87 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 114 NDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 114 ~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
+..++.++.++-..+...+..++.+...+ ..++..++++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l 161 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQL 161 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 35688999999999998888888887655 55666666666
No 58
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=28.44 E-value=2.5e+02 Score=22.74 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 024093 118 LEELTGLEQDILDGLKIIHECKDQV 142 (272)
Q Consensus 118 leEL~~LEq~LE~sL~~VR~RK~ql 142 (272)
++.+.+||+++...+..+.+-|.++
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~ 31 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776666665544443
No 59
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=28.38 E-value=2e+02 Score=27.66 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=51.5
Q ss_pred CCcEEEEEeccCcc-----cccccCCcchhhhhHHHHhhhccccccchhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCC
Q 024093 40 DAKVSILICSSTAK-----AHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLN 114 (272)
Q Consensus 40 DaeValIifS~~GK-----l~e~~sps~~~kkIidRYq~~s~~~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~ 114 (272)
++=|||+.|.+... .+.|-. ---+.||.+..... +..+.++++.++.+.++..+.+-...|...|.+.+
T Consensus 117 qCvICLygfa~~~~ft~T~C~Hy~H-----~~ClaRyl~~~~~~-lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 117 QCVICLYGFASSPAFTVTACDHYMH-----FACLARYLTECLTG-LRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred ceEEEEEeecCCCceeeehhHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 35688998987431 122211 13467776654322 23445566666667777777776667777777666
Q ss_pred CCCHH----HHHHHHHHHHHhHHHHHHHH
Q 024093 115 DLTLE----ELTGLEQDILDGLKIIHECK 139 (272)
Q Consensus 115 ~LSle----EL~~LEq~LE~sL~~VR~RK 139 (272)
+|-.- ++..+-+..-.+|.....||
T Consensus 191 slk~a~~Pt~~l~~~~~~~eslrq~~~r~ 219 (368)
T KOG4445|consen 191 SLKIAEFPTYPMELYQPSAESLRQQEERK 219 (368)
T ss_pred ceeccCCCccccccCcccHHHHHHHHHHH
Confidence 65422 22233333444555555566
No 60
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=28.26 E-value=72 Score=23.15 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhh
Q 024093 141 QVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQ 192 (272)
Q Consensus 141 qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 192 (272)
..+.++|..|..+. ..|+.||..|+
T Consensus 17 evLK~~I~eL~~~n---------------------------~~Le~EN~~Lk 41 (59)
T PF01166_consen 17 EVLKEQIAELEERN---------------------------SQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHH---------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------HHHHHHHHHHH
Confidence 45677888888888 88899998887
No 61
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=28.19 E-value=2.8e+02 Score=23.33 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=36.2
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHH
Q 024093 82 SHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQV 142 (272)
Q Consensus 82 ~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK~ql 142 (272)
.....+++++..++..+..|+.+++.+. ..++.+||...-..|+.-+..+.+|-..+
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666665443 35778888887777776666665554443
No 62
>PRK11637 AmiB activator; Provisional
Probab=27.78 E-value=5.7e+02 Score=24.87 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhHHHH
Q 024093 121 LTGLEQDILDGLKII 135 (272)
Q Consensus 121 L~~LEq~LE~sL~~V 135 (272)
|..++.+|...-..|
T Consensus 77 l~~l~~qi~~~~~~i 91 (428)
T PRK11637 77 LKKQEEAISQASRKL 91 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444333333
No 63
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=27.41 E-value=7.8e+02 Score=26.49 Aligned_cols=54 Identities=9% Similarity=0.126 Sum_probs=30.1
Q ss_pred EeccCcccccccCCcchhhhhHHHHhhhccccccchhhhhhhhhhhHHHHHHHHHH
Q 024093 47 ICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILK 102 (272)
Q Consensus 47 ifS~~GKl~e~~sps~~~kkIidRYq~~s~~~l~~~~~EklqeeL~kLKe~n~~Lr 102 (272)
.|-+.|+...|...+ .+..++-+....+...|...++...+++..+.+....+.
T Consensus 139 ~~~~q~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~ 192 (1179)
T TIGR02168 139 SIIEQGKISEIIEAK--PEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLE 192 (1179)
T ss_pred hheecccHHHHHcCC--HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888887432 234444455555655565555555555555544444443
No 64
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=26.99 E-value=3e+02 Score=27.20 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=50.5
Q ss_pred CcccccccCCcc---hhhhhHHHHhh--------hccccccchhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHH
Q 024093 51 TAKAHEYISPST---TTKQLLDLYQK--------TLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLE 119 (272)
Q Consensus 51 ~GKl~e~~sps~---~~kkIidRYq~--------~s~~~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~LSle 119 (272)
=|.+++-.||.- ++++++.|--- .+|-...|..|..|.-= +-..+-.
T Consensus 129 iGdpFPmlSakhGiftieQliSRvgVIGVTlMAvLSGFGAVN~PYsyms~F----------------------iR~Vee~ 186 (462)
T KOG2417|consen 129 IGDPFPMLSAKHGIFTIEQLISRVGVIGVTLMAVLSGFGAVNAPYSYMSYF----------------------IRPVEET 186 (462)
T ss_pred hCCCCCCCCcccceeeHHHHHhhhhhhhhhHHHHHhccCccCCchhhhhhh----------------------hccccHH
Confidence 366666666643 66777777632 23444455666554211 1122235
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024093 120 ELTGLEQDILDGLKIIHECKDQVLARQINT 149 (272)
Q Consensus 120 EL~~LEq~LE~sL~~VR~RK~qli~~Qi~~ 149 (272)
|..+||.+|-.+.+-+-++|.++.+.|.+.
T Consensus 187 di~~lErrL~qtmdmiisKKkk~a~~~l~~ 216 (462)
T KOG2417|consen 187 DIIQLERRLAQTMDMIISKKKKMAMAQLEE 216 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999988743
No 65
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=26.58 E-value=4.3e+02 Score=22.96 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHhhhhhhhhhhhhHHHhh
Q 024093 113 LNDLTLEELTGLEQDILDGLK---IIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENK 189 (272)
Q Consensus 113 L~~LSleEL~~LEq~LE~sL~---~VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 189 (272)
...|++++...+-+.+..... .++.. .+-+..++..|+.+. ..|++++.
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e-~~~l~~e~~~l~~~~---------------------------e~Le~e~~ 128 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKE-NERLKNQNESLQKRN---------------------------EELEKELE 128 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHHH---------------------------HHHHHHHH
Confidence 367999999998888886533 23222 344567777888888 88888888
Q ss_pred hhh
Q 024093 190 SLQ 192 (272)
Q Consensus 190 ~l~ 192 (272)
.|.
T Consensus 129 ~L~ 131 (161)
T TIGR02894 129 KLR 131 (161)
T ss_pred HHH
Confidence 887
No 66
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=26.17 E-value=78 Score=26.56 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=29.5
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHH
Q 024093 85 EKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLE 119 (272)
Q Consensus 85 EklqeeL~kLKe~n~~LrkeiRql~GedL~~LSle 119 (272)
..||.+|++.++..+.+...|+++.|.|-++.-.-
T Consensus 6 ~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp~ 40 (134)
T PF04697_consen 6 RTLQAQLEKAKESLKNVDENIKKLTGRDPSENRPG 40 (134)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCcc
Confidence 46888999999999999999999999987665443
No 67
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=26.03 E-value=85 Score=27.32 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=16.2
Q ss_pred cCCcEEEEEecc--------CcccccccCCc
Q 024093 39 CDAKVSILICSS--------TAKAHEYISPS 61 (272)
Q Consensus 39 CDaeValIifS~--------~GKl~e~~sps 61 (272)
-||..|+|||-| +|+=|.|+.|+
T Consensus 11 ~~~k~C~IC~KpsttVL~t~~~~DfFY~C~~ 41 (182)
T PF08432_consen 11 TDAKACFICYKPSTTVLITPDNKDFFYVCPS 41 (182)
T ss_pred CCCCceeEecCCCceEEecCCCCCeEEeCcc
Confidence 678888888876 45666666654
No 68
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=26.02 E-value=2.8e+02 Score=29.32 Aligned_cols=123 Identities=17% Similarity=0.200 Sum_probs=63.3
Q ss_pred ccchhHHH----HHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcc-ccccchhhhhhhhhhhHHHHHHH
Q 024093 25 RNGLFKKA----RELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR-VDLWSSHYEKMLENLGAVEQVNR 99 (272)
Q Consensus 25 R~GL~KKA----~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~-~~l~~~~~EklqeeL~kLKe~n~ 99 (272)
++.|.+.. .||+-||-+=--.++++. ..+ .++. .+.+.|..+.. ...+..++..-..++..+..+++
T Consensus 63 ~~~L~~~ia~~eael~~l~s~l~~~~~~~~---~~~--k~e~---tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie 134 (660)
T KOG4302|consen 63 KARLLQEIAVIEAELNDLCSALGEPSIIGE---ISD--KIEG---TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIE 134 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccccc---ccc--ccCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444 477777765444444444 000 0222 44555555422 11111222222334444555555
Q ss_pred HHHHHHHhhc------cCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 024093 100 ILKKQIRQRM------GESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHI 160 (272)
Q Consensus 100 ~LrkeiRql~------GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~~~~~~~ 160 (272)
.|-.++.-.. --|..+||.+.|.+|-..|...-+..+.|..+++ .++.-+.+.|..
T Consensus 135 ~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~-----~~~~~I~~l~~~ 196 (660)
T KOG4302|consen 135 KLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVL-----ELKEEIKSLCSV 196 (660)
T ss_pred HHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 5544442221 1256789999999999988888877777766654 344444444543
No 69
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.81 E-value=4.7e+02 Score=23.19 Aligned_cols=115 Identities=13% Similarity=0.060 Sum_probs=65.7
Q ss_pred HHHhhhcCCcEEEEEeccCcccccccC-------Ccc----hhhhhHHHHhhh--------cc----ccccc--hhhhhh
Q 024093 33 RELTILCDAKVSILICSSTAKAHEYIS-------PST----TTKQLLDLYQKT--------LR----VDLWS--SHYEKM 87 (272)
Q Consensus 33 ~ELSVLCDaeValIifS~~GKl~e~~s-------ps~----~~kkIidRYq~~--------s~----~~l~~--~~~Ekl 87 (272)
=-=+.-|=|+.+=|.|--.||---|.- ||. -++.=+.+|..- +. +..++ -..+.|
T Consensus 42 vqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eem 121 (201)
T KOG4603|consen 42 VQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEM 121 (201)
T ss_pred HHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 344556888888898888887554432 222 112223334321 10 11111 123567
Q ss_pred hhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024093 88 LENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINT 149 (272)
Q Consensus 88 qeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~ 149 (272)
|+++..|+++....+..+..+. ...+..+.+|-.+.+..-+...+.-|.||. ++.+=+++
T Consensus 122 Qe~i~~L~kev~~~~erl~~~k-~g~~~vtpedk~~v~~~y~~~~~~wrk~kr-mf~ei~d~ 181 (201)
T KOG4603|consen 122 QEEIQELKKEVAGYRERLKNIK-AGTNHVTPEDKEQVYREYQKYCKEWRKRKR-MFREIIDK 181 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 7777777777666665554433 245567788888888888888888887776 44443444
No 70
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.62 E-value=2.8e+02 Score=20.95 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 116 LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
+|++=|..||..+..++..| .++.-+|+.||.|-
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEkn 34 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKN 34 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh
Confidence 56777888888888888776 35666677777766
No 71
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.39 E-value=2.7e+02 Score=24.01 Aligned_cols=76 Identities=20% Similarity=0.315 Sum_probs=0.0
Q ss_pred hHHHHhhhccccccchhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 024093 67 LLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQ 146 (272)
Q Consensus 67 IidRYq~~s~~~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Q 146 (272)
+|.|.... -.....+++.++..+++.+...+.......+..+.++ +|+..|+++|+. -..+
T Consensus 116 ~I~r~~~l------i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~-~ei~~lk~el~~------------~~~~ 176 (192)
T PF05529_consen 116 VIRRVHSL------IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLS-EEIEKLKKELEK------------KEKE 176 (192)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhH-HHHHHHHHHHHH------------HHHH
Q ss_pred HHHHHhcccccccccccccccchhhHhhhhhhhhhhhhHHHh
Q 024093 147 INTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKEN 188 (272)
Q Consensus 147 i~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (272)
+++||++. .++++|.
T Consensus 177 ~~~LkkQ~---------------------------~~l~~ey 191 (192)
T PF05529_consen 177 IEALKKQS---------------------------EGLQKEY 191 (192)
T ss_pred HHHHHHHH---------------------------HHHHhhc
No 72
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.84 E-value=3.5e+02 Score=21.30 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=17.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 124 LEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 124 LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
+++..++++..+..|+..+ ...++.+.++.
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~ 90 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQE 90 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3455566666666665444 55566666655
No 73
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=24.04 E-value=2.8e+02 Score=27.83 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=38.5
Q ss_pred ccccccCCcc----hhh----hhHHHHhhhccccccchhhhhhhhhhhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHH
Q 024093 53 KAHEYISPST----TTK----QLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGL 124 (272)
Q Consensus 53 Kl~e~~sps~----~~k----kIidRYq~~s~~~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~GedL~~LSleEL~~L 124 (272)
..++|+||.- .++ +.+.+|+-+..... ..|-.....+..|+++++.|+.- ....+. +++ +|+..|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~fe~pi~ele~ki~el~~~-~~~~~~---~~~-~ei~~l 110 (431)
T PLN03230 38 LEHEYPWPEKLPQGELTTGALKILNRFKPLKNKPK--PVTLPFEKPIVDLENRIDEVREL-ANKTGV---DFS-AQIAEL 110 (431)
T ss_pred CCCCCCCcccCCCCcccccHHHHHHhcCCCCCCCC--CCccchhhHHHHHHHHHHHHHhh-hhcccc---cHH-HHHHHH
Confidence 3499999863 222 46777766543211 22222334455666666666532 111121 222 567777
Q ss_pred HHHHHHhHHHH
Q 024093 125 EQDILDGLKII 135 (272)
Q Consensus 125 Eq~LE~sL~~V 135 (272)
|..++...+.|
T Consensus 111 ~~~~~~~~~~i 121 (431)
T PLN03230 111 EERYDQVRREL 121 (431)
T ss_pred HHHHHHHHHHH
Confidence 77666544433
No 74
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=24.02 E-value=3.1e+02 Score=20.58 Aligned_cols=10 Identities=50% Similarity=0.863 Sum_probs=8.9
Q ss_pred cccccccccc
Q 024093 155 CSVCHIILKT 164 (272)
Q Consensus 155 ~~~~~~~~~~ 164 (272)
|+.|++++-+
T Consensus 81 C~vC~k~l~~ 90 (109)
T PF10367_consen 81 CSVCGKPLGN 90 (109)
T ss_pred ccCcCCcCCC
Confidence 9999999966
No 75
>PRK09343 prefoldin subunit beta; Provisional
Probab=23.85 E-value=1.8e+02 Score=23.55 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=16.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 126 QDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 126 q~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
+..+.+...|.+|+.-+ ...|+.+.++.
T Consensus 67 qd~~e~~~~l~~r~E~i-e~~ik~lekq~ 94 (121)
T PRK09343 67 VDKTKVEKELKERKELL-ELRSRTLEKQE 94 (121)
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 35555556666555433 56677777666
No 76
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=23.65 E-value=13 Score=30.31 Aligned_cols=37 Identities=22% Similarity=0.440 Sum_probs=27.6
Q ss_pred chhhhhhhccchhH---------HHHHHhhhcCCcEEEEEeccCcc
Q 024093 17 RQVTFSKRRNGLFK---------KARELTILCDAKVSILICSSTAK 53 (272)
Q Consensus 17 RqvTFsKRR~GL~K---------KA~ELSVLCDaeValIifS~~GK 53 (272)
+-.-||+=|+-|-+ |..|+.+-||.|+-+++..+.|.
T Consensus 50 ~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 50 EAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred eEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 33345666665555 45699999999999999999664
No 77
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.96 E-value=3.6e+02 Score=24.05 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=6.4
Q ss_pred hhhHHHhhhhh
Q 024093 182 RGVQKENKSLQ 192 (272)
Q Consensus 182 ~~~~~~~~~l~ 192 (272)
..|.++|..|.
T Consensus 135 ~~L~~~n~~L~ 145 (206)
T PRK10884 135 NGLKEENQKLK 145 (206)
T ss_pred HHHHHHHHHHH
Confidence 44556666665
No 78
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=22.79 E-value=64 Score=27.37 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.0
Q ss_pred HhhhcCCcEEEEEeccCccccccc
Q 024093 35 LTILCDAKVSILICSSTAKAHEYI 58 (272)
Q Consensus 35 LSVLCDaeValIifS~~GKl~e~~ 58 (272)
++++|||||-+++-|-+.+...|+
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHhhccceeeeeecccCccccCC
Confidence 678999999999999988877774
No 79
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.38 E-value=8.8e+02 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=11.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH
Q 024093 85 EKMLENLGAVEQVNRILKKQIR 106 (272)
Q Consensus 85 EklqeeL~kLKe~n~~LrkeiR 106 (272)
..+..++..+..+.+.+.+.++
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555554444
No 80
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=22.14 E-value=3.2e+02 Score=26.28 Aligned_cols=92 Identities=18% Similarity=0.257 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhhhhhhhh
Q 024093 119 EELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQDGFVSK 198 (272)
Q Consensus 119 eEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 198 (272)
--|..|...+-.+|.+|-+|-.++ .+|+..|-.+- .. .-.++..+++..+.+..++-+.
T Consensus 248 ~~Ldklh~eit~~LEkI~SREK~l-NnqL~~l~q~f------------r~--------a~~~lse~~e~y~q~~~gv~~r 306 (384)
T KOG0972|consen 248 PYLDKLHKEITKALEKIASREKSL-NNQLASLMQKF------------RR--------ATDTLSELREKYKQASVGVSSR 306 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH------------HH--------HHHHHHHHHHHHHHhcccHHHH
Confidence 467888888999999999885554 77887776655 00 0012234555666677777777
Q ss_pred ccccchhhhhhHHHHHHhhh----hchhhHHHHHHHH
Q 024093 199 ISCLSSIFLITEDIKQRIKT----FENNEILVFIQII 231 (272)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 231 (272)
...|+.+...-+..+|.+++ .++..-++.|...
T Consensus 307 T~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqa 343 (384)
T KOG0972|consen 307 TETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQA 343 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHH
Confidence 77888877777777776654 4444445555443
No 81
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=21.78 E-value=66 Score=26.09 Aligned_cols=27 Identities=22% Similarity=0.073 Sum_probs=21.7
Q ss_pred HHHHhhhcCCcEEEEEeccCcccccccC
Q 024093 32 ARELTILCDAKVSILICSSTAKAHEYIS 59 (272)
Q Consensus 32 A~ELSVLCDaeValIifS~~GKl~e~~s 59 (272)
-.+|..|-+|- |...||++|++.+|-.
T Consensus 3 l~~Lm~lpGv~-AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGVV-AAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCeE-EEEEECCCCeEEeeec
Confidence 45777777774 5589999999999976
No 82
>PLN02372 violaxanthin de-epoxidase
Probab=21.71 E-value=4.2e+02 Score=26.58 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 024093 91 LGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLAR 145 (272)
Q Consensus 91 L~kLKe~n~~LrkeiRql~GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~ 145 (272)
++.|.+..+..++.| ++|..++|.+++.-+..|+..-..++..
T Consensus 363 ~~~l~~~~e~~e~~i------------~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 363 LERLEKDVEEGEKTI------------VKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555544 4568888888888888888776666554
No 83
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=21.57 E-value=15 Score=27.85 Aligned_cols=35 Identities=23% Similarity=0.483 Sum_probs=27.4
Q ss_pred hhhhhhccchhHHH---------HHHhhhcCCcEEEEEeccCcc
Q 024093 19 VTFSKRRNGLFKKA---------RELTILCDAKVSILICSSTAK 53 (272)
Q Consensus 19 vTFsKRR~GL~KKA---------~ELSVLCDaeValIifS~~GK 53 (272)
+-||+-|++|-.|. .|+.+-||.|.-|+..-|.|.
T Consensus 20 ~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 20 TYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred EEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 33688888886664 589999999999999999887
No 84
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=21.42 E-value=4.2e+02 Score=26.51 Aligned_cols=59 Identities=19% Similarity=0.448 Sum_probs=35.1
Q ss_pred eeEEeCCCccch-hhhh---hhc-------cchhHHHH-HHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhh
Q 024093 7 EMKRIENATNRQ-VTFS---KRR-------NGLFKKAR-ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (272)
Q Consensus 7 eIkrIeN~t~Rq-vTFs---KRR-------~GL~KKA~-ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~ 74 (272)
.|+-|.+.++|. |.|- ||. ++|+|+-. +-|+-| -+++|.+.|++..| + +++|++.|-..
T Consensus 257 ~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~----Nm~~~~~~g~p~~~-~----l~~iL~~f~~~ 327 (445)
T cd00187 257 GISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI----NMVAFDPNGRPKKL-N----LKEILQEFLDH 327 (445)
T ss_pred ccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee----eEEEEecCCeeEEe-C----HHHHHHHHHHH
Confidence 356666666663 3331 222 35554432 222223 57888889999888 3 46899888765
No 85
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=21.32 E-value=4.7e+02 Score=22.70 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=24.7
Q ss_pred CcchhhhhHHHHhhhcc----ccccchhhhhhhhhhhHHHHHHHHHHHHHH
Q 024093 60 PSTTTKQLLDLYQKTLR----VDLWSSHYEKMLENLGAVEQVNRILKKQIR 106 (272)
Q Consensus 60 ps~~~kkIidRYq~~s~----~~l~~~~~EklqeeL~kLKe~n~~LrkeiR 106 (272)
++.++..||.=.++... ...+....+.++.++..|+.+|+.|+.++.
T Consensus 78 ~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~ 128 (161)
T TIGR02894 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELE 128 (161)
T ss_pred ccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777655554432 112233344555666666666666665543
No 86
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=21.13 E-value=7.5e+02 Score=23.79 Aligned_cols=155 Identities=20% Similarity=0.299 Sum_probs=80.7
Q ss_pred hhhhhccchhHHHHHHh--hhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhccccccchhhhhhhhhhhHHHHH
Q 024093 20 TFSKRRNGLFKKARELT--ILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQV 97 (272)
Q Consensus 20 TFsKRR~GL~KKA~ELS--VLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~~~l~~~~~EklqeeL~kLKe~ 97 (272)
++..|..+|-||-.|+- ..++.+..+.-- +...++-.++..++.... ....+.+.+++.+..++..
T Consensus 34 qLqer~q~LKkk~~el~~~~~~~~d~~~~~~----------~~~~~La~lL~~sre~Nk--~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 34 QLQERYQALKKKYRELIQEAAGFGDPSIPPE----------KENKNLAQLLSESREQNK--KLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCCccCCcc----------cchhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhch
Confidence 45668888888888776 333333221100 112245566776665421 1233444555666666666
Q ss_pred HHHHHHHHHhhc-c-CcCCCCC-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 024093 98 NRILKKQIRQRM-G-ESLNDLT-----------LEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVCSVCHIILKT 164 (272)
Q Consensus 98 n~~LrkeiRql~-G-edL~~LS-----------leEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~ 164 (272)
+..|+..+...- | ..+.... ++.++.--.+|+.-+..+-+-|.+++. +-+.++.|. .-
T Consensus 102 ~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~-ERD~yk~K~--------~R 172 (319)
T PF09789_consen 102 IKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVT-ERDAYKCKA--------HR 172 (319)
T ss_pred HHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--------HH
Confidence 666666554322 2 2222111 222222334666666666777777754 457788887 22
Q ss_pred cccchhhHhhhhhh----hhhhhhHHHhhhhhhhhhh
Q 024093 165 YDSSLSFILLFVGN----FQVRGVQKENKSLQDGFVS 197 (272)
Q Consensus 165 ~~~s~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ 197 (272)
-+..++.++ .|+ .-|..|--||+.|++.+-+
T Consensus 173 LN~ELn~~L--~g~~~rivDIDaLi~ENRyL~erl~q 207 (319)
T PF09789_consen 173 LNHELNYIL--NGDENRIVDIDALIMENRYLKERLKQ 207 (319)
T ss_pred HHHHHHHHh--CCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 234443333 343 3466777788888744443
No 87
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=21.08 E-value=1.1e+02 Score=22.06 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=19.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 024093 82 SHYEKMLENLGAVEQVNRILKKQIRQR 108 (272)
Q Consensus 82 ~~~EklqeeL~kLKe~n~~LrkeiRql 108 (272)
.++..++.+++.++++++.|+.++..+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777888888888887776654
No 88
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=20.97 E-value=4.8e+02 Score=24.93 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=23.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhhcc
Q 024093 82 SHYEKMLENLGAVEQVNRILKKQIRQRMG 110 (272)
Q Consensus 82 ~~~EklqeeL~kLKe~n~~LrkeiRql~G 110 (272)
.+++.+|..++.|.++|..|+.+-.++..
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~ 188 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKT 188 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45678899999999999999887655543
No 89
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=20.66 E-value=2e+02 Score=19.86 Aligned_cols=11 Identities=36% Similarity=0.540 Sum_probs=6.5
Q ss_pred CCCHHHHHHHH
Q 024093 115 DLTLEELTGLE 125 (272)
Q Consensus 115 ~LSleEL~~LE 125 (272)
|+|++|++.+-
T Consensus 14 GfsL~eI~~~l 24 (65)
T PF09278_consen 14 GFSLEEIRELL 24 (65)
T ss_dssp T--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 47777777776
No 90
>PRK03918 chromosome segregation protein; Provisional
Probab=20.60 E-value=1e+03 Score=25.21 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHHH
Q 024093 116 LTLEELTGLEQDILD 130 (272)
Q Consensus 116 LSleEL~~LEq~LE~ 130 (272)
++.+++..++..++.
T Consensus 656 ~~~~~~~~l~~~~~~ 670 (880)
T PRK03918 656 YSEEEYEELREEYLE 670 (880)
T ss_pred cCHHHHHHHHHHHHH
Confidence 344555555554444
No 91
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=20.56 E-value=25 Score=29.17 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=2.2
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHH--HHHHHHHHHhcccccccccccccccchhhHhhhhhh--hhhh
Q 024093 116 LTLEELTGLEQDILDGLKIIHECKDQV--LARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGN--FQVR 182 (272)
Q Consensus 116 LSleEL~~LEq~LE~sL~~VR~RK~ql--i~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~ 182 (272)
-++.+|..+-..|...++.|..+..+. +...|..+|+.+ ..+= ..-.+|.++|-|-|+ ++||
T Consensus 59 ~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI----~qAR-~~An~IkV~m~F~g~s~velr 124 (138)
T PF06009_consen 59 NSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELI----AQAR-DAANRIKVSMKFNGNSGVELR 124 (138)
T ss_dssp ----------------------------------------------------------B-------EEEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH----HHHH-HHHhheeeeeEECCCceeeeC
Confidence 345566666666666666666665553 566666666655 1111 123467778888877 4444
No 92
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=20.38 E-value=3.3e+02 Score=23.40 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=25.1
Q ss_pred cCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 024093 110 GESLNDLTLEELTGLEQDILDGLKIIHECKDQVL 143 (272)
Q Consensus 110 GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli 143 (272)
+-||..||+++|..|.+++|.-|.-+..--..+-
T Consensus 7 ~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~ 40 (153)
T KOG3048|consen 7 GIDLTKLSLEQLGALKKQFDQELNFLQDSLNALK 40 (153)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999888876665555444443
No 93
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=20.11 E-value=7.5e+02 Score=23.40 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=22.9
Q ss_pred ccchhhHhhhhhhhhhhhhHHHhhhhhhhhhhhc
Q 024093 166 DSSLSFILLFVGNFQVRGVQKENKSLQDGFVSKI 199 (272)
Q Consensus 166 ~~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 199 (272)
|--.+--|.+=+-.|+|.++.-|..|.+++-+-+
T Consensus 187 DL~~~~~va~Q~~pqir~iq~nN~~Li~ki~~a~ 220 (333)
T PF05816_consen 187 DLQLSRQVAIQTAPQIRMIQNNNRELIEKIQSAI 220 (333)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333444555566788999999999987766543
Done!