Query 024093
Match_columns 272
No_of_seqs 280 out of 1632
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 18:06:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.4E-36 4.9E-41 229.2 4.1 73 2-76 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 8.1E-36 2.8E-40 230.8 4.0 73 2-76 1-73 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 5.2E-35 1.8E-39 230.0 3.0 79 1-84 16-94 (100)
4 1hbx_A SRF, serum response fac 100.0 3E-34 1E-38 222.8 2.5 70 1-72 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 1.2E-33 4.1E-38 223.5 2.7 69 1-71 9-77 (103)
6 2jee_A YIIU; FTSZ, septum, coi 68.2 23 0.00077 26.3 7.3 34 116-154 3-36 (81)
7 2dfs_A Myosin-5A; myosin-V, in 64.0 46 0.0016 35.3 11.5 24 182-209 1026-1049(1080)
8 1j1d_C Troponin I, TNI; THIN f 55.2 80 0.0027 25.3 9.4 34 111-144 53-86 (133)
9 1a93_B MAX protein, coiled coi 48.5 15 0.00051 22.9 2.8 24 85-108 10-33 (34)
10 1j1e_C Troponin I, TNI; THIN f 40.3 1.4E+02 0.0049 25.1 8.6 34 111-144 53-86 (180)
11 1l8d_A DNA double-strand break 40.1 58 0.002 24.3 5.7 13 152-164 47-59 (112)
12 2oa5_A Hypothetical protein BQ 38.4 88 0.003 24.3 6.4 67 82-151 8-76 (110)
13 3oja_B Anopheles plasmodium-re 34.7 1.4E+02 0.0047 28.4 8.7 17 81-97 455-471 (597)
14 2w6a_A ARF GTPase-activating p 32.7 1.3E+02 0.0043 21.0 7.2 51 115-192 9-61 (63)
15 1m1j_C Fibrinogen gamma chain; 31.3 3.4E+02 0.012 25.5 11.2 60 50-111 11-70 (409)
16 1ytz_T Troponin T; muscle, THI 30.7 1.2E+02 0.0042 23.3 6.2 34 111-144 37-70 (107)
17 3a7p_A Autophagy protein 16; c 29.7 2.3E+02 0.0079 23.2 8.7 18 182-199 120-137 (152)
18 2l16_A SEC-independent protein 29.2 2.2 7.5E-05 31.5 -4.0 29 43-75 16-44 (78)
19 2dfs_A Myosin-5A; myosin-V, in 28.7 30 0.001 36.8 3.0 21 182-202 1008-1028(1080)
20 2rpa_A Katanin P60 ATPase-cont 28.0 12 0.00042 27.4 -0.0 35 29-76 16-50 (78)
21 1deb_A APC protein, adenomatou 26.6 41 0.0014 22.8 2.3 39 180-218 11-49 (54)
22 1go4_E MAD1 (mitotic arrest de 25.0 25 0.00085 27.0 1.2 15 140-154 77-91 (100)
23 1j1d_B Troponin T, TNT; THIN f 23.9 2.5E+02 0.0084 21.5 8.3 33 112-144 38-70 (106)
24 3twe_A Alpha4H; unknown functi 23.9 83 0.0028 18.0 3.0 18 89-106 8-25 (27)
25 3s9g_A Protein hexim1; cyclin 23.3 1.5E+02 0.005 22.7 5.2 11 182-192 75-85 (104)
26 3gp4_A Transcriptional regulat 22.9 2.7E+02 0.0094 21.7 7.3 39 115-154 59-97 (142)
27 1dip_A Delta-sleep-inducing pe 22.7 63 0.0022 23.5 2.9 25 141-192 18-42 (78)
28 1g6u_A Domain swapped dimer; d 22.3 1.6E+02 0.0056 18.9 6.4 26 114-139 15-40 (48)
29 4gkw_A Spindle assembly abnorm 22.2 1.2E+02 0.0039 24.6 4.7 19 203-221 143-161 (167)
30 4dnd_A Syntaxin-10, SYN10; str 22.1 2.8E+02 0.0097 21.7 7.1 79 63-142 42-128 (130)
31 2dgc_A Protein (GCN4); basic d 22.0 87 0.003 21.6 3.5 31 131-192 20-50 (63)
32 1fxk_A Prefoldin; archaeal pro 20.9 2.4E+02 0.0084 20.4 7.9 11 64-74 3-13 (107)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.4e-36 Score=229.18 Aligned_cols=73 Identities=41% Similarity=0.690 Sum_probs=69.0
Q ss_pred CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcc
Q 024093 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (272)
Q Consensus 2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~ 76 (272)
||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+||+|+|+|| +|++|++||++.+.
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~--~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC--CHHHHHHHHHhccC
Confidence 89999999999999999999999999999999999999999999999999999999987 47999999998753
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=8.1e-36 Score=230.77 Aligned_cols=73 Identities=41% Similarity=0.690 Sum_probs=70.3
Q ss_pred CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcc
Q 024093 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (272)
Q Consensus 2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~ 76 (272)
||+||+|++|||+++|||||||||+||||||+||||||||+||||||||+|++|+|+|| +|++|++||++.+.
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~--~~~~il~rY~~~~~ 73 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNE 73 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHCCS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC--CHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999997 47999999999765
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=5.2e-35 Score=230.04 Aligned_cols=79 Identities=35% Similarity=0.517 Sum_probs=72.3
Q ss_pred CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcccccc
Q 024093 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW 80 (272)
Q Consensus 1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~~~l~ 80 (272)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+||+ +..|+++|. |.++|
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~---G~~lw 90 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQE---GRNLI 90 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHH---HHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhh---CCcHH
Confidence 8999999999999999999999999999999999999999999999999999999999996 569988774 45677
Q ss_pred chhh
Q 024093 81 SSHY 84 (272)
Q Consensus 81 ~~~~ 84 (272)
+..+
T Consensus 91 ~~cl 94 (100)
T 1mnm_A 91 QACL 94 (100)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.98 E-value=3e-34 Score=222.79 Aligned_cols=70 Identities=33% Similarity=0.496 Sum_probs=67.1
Q ss_pred CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHh
Q 024093 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQ 72 (272)
Q Consensus 1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq 72 (272)
|||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+|++|+|+||+ |..+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999985 689999664
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=1.2e-33 Score=223.49 Aligned_cols=69 Identities=33% Similarity=0.503 Sum_probs=66.4
Q ss_pred CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHH
Q 024093 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLY 71 (272)
Q Consensus 1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRY 71 (272)
|||+||+|++|||+++|||||||||+||||||+||||||||+||||||||+|++|+|+||+ |..+|+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999985 68999864
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.16 E-value=23 Score=26.27 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 116 LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
+|++=|.+||..+..++..|- ++.-+++.||.|-
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN 36 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKN 36 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 688889999999999998774 4556667777766
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=64.02 E-value=46 Score=35.34 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=18.5
Q ss_pred hhhHHHhhhhhhhhhhhccccchhhhhh
Q 024093 182 RGVQKENKSLQDGFVSKISCLSSIFLIT 209 (272)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 209 (272)
.+|+++|..|+ +++.+++......
T Consensus 1026 ~~L~~e~~~L~----qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1026 SELKEQNTLLK----TEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 89999999999 8887877544443
No 8
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=55.25 E-value=80 Score=25.34 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.5
Q ss_pred CcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024093 111 ESLNDLTLEELTGLEQDILDGLKIIHECKDQVLA 144 (272)
Q Consensus 111 edL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~ 144 (272)
-++++||.++|+.+-..|-..+..+-+-|+-+-.
T Consensus 53 L~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~ 86 (133)
T 1j1d_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIEA 86 (133)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4799999999999999999999999999987743
No 9
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=48.53 E-value=15 Score=22.88 Aligned_cols=24 Identities=17% Similarity=0.421 Sum_probs=19.8
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhh
Q 024093 85 EKMLENLGAVEQVNRILKKQIRQR 108 (272)
Q Consensus 85 EklqeeL~kLKe~n~~LrkeiRql 108 (272)
...+.+++.||++|..|+.++|.+
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhc
Confidence 345778999999999999998864
No 10
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=40.30 E-value=1.4e+02 Score=25.09 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.5
Q ss_pred CcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024093 111 ESLNDLTLEELTGLEQDILDGLKIIHECKDQVLA 144 (272)
Q Consensus 111 edL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~ 144 (272)
-++++||.++|+.+-..|-..+..+-+-|+-+-.
T Consensus 53 Lnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~ 86 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIEA 86 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3899999999999999999999999999988743
No 11
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.10 E-value=58 Score=24.35 Aligned_cols=13 Identities=31% Similarity=0.623 Sum_probs=10.4
Q ss_pred hcccccccccccc
Q 024093 152 RKVCSVCHIILKT 164 (272)
Q Consensus 152 kK~~~~~~~~~~~ 164 (272)
...|++||.|+..
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 3459999999884
No 12
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=38.40 E-value=88 Score=24.35 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=41.9
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHhh--ccCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024093 82 SHYEKMLENLGAVEQVNRILKKQIRQR--MGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFK 151 (272)
Q Consensus 82 ~~~EklqeeL~kLKe~n~~LrkeiRql--~GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lk 151 (272)
..+|.|..+|.+|+=+|..|++.++.- -+.+-.-|+..+=..+-...-.+|...-.+| |..++.+.-
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K---Ie~kVr~~t 76 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK---IEAKVRSRA 76 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHh
Confidence 456788899999999999999888752 1134456888877776666665555554443 444444433
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.70 E-value=1.4e+02 Score=28.42 Aligned_cols=17 Identities=0% Similarity=0.106 Sum_probs=6.7
Q ss_pred chhhhhhhhhhhHHHHH
Q 024093 81 SSHYEKMLENLGAVEQV 97 (272)
Q Consensus 81 ~~~~EklqeeL~kLKe~ 97 (272)
......+..++..++++
T Consensus 455 ~~e~~~~~~~i~~l~~~ 471 (597)
T 3oja_B 455 EAEVNELRAEVQQLTNE 471 (597)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444444433
No 14
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=32.69 E-value=1.3e+02 Score=21.03 Aligned_cols=51 Identities=20% Similarity=0.354 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHHHhcccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhh
Q 024093 115 DLTLEELTGLEQDILDGLKIIHE--CKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQ 192 (272)
Q Consensus 115 ~LSleEL~~LEq~LE~sL~~VR~--RK~qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 192 (272)
..++.|..++...|-.+=.+|.. +-+.-+.+++.-+++++ ..|+.||..|+
T Consensus 9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~l---------------------------q~LQsen~~Lr 61 (63)
T 2w6a_A 9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREI---------------------------HKLQAENLQLR 61 (63)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHH---------------------------HHHHhhhhhhc
Confidence 46788888888888777666654 22334467778888899 99999999887
No 15
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.26 E-value=3.4e+02 Score=25.54 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=40.4
Q ss_pred cCcccccccCCcchhhhhHHHHhhhccccccchhhhhhhhhhhHHHHHHHHHHHHHHhhccC
Q 024093 50 STAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGE 111 (272)
Q Consensus 50 ~~GKl~e~~sps~~~kkIidRYq~~s~~~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~Ge 111 (272)
++..+=.||...-.+.+.+.+|+.....++ ...+.+..++..+......|.+.+...+.+
T Consensus 11 ~~~~~G~~CPT~C~i~d~L~k~e~~V~~~l--~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 11 LDERFGSYCPTTCGIADFFNKYRLTTDGEL--LEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp CCGGGCCEEECTTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CCcccCCcCCCcccHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345555666554578999999998654333 344666667777777777777777666554
No 16
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=30.72 E-value=1.2e+02 Score=23.29 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=30.6
Q ss_pred CcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024093 111 ESLNDLTLEELTGLEQDILDGLKIIHECKDQVLA 144 (272)
Q Consensus 111 edL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~ 144 (272)
-++++||.++|+.+-..|-..+..+-+-|+-+-.
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~ 70 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE 70 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3889999999999999999999999999988743
No 17
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=29.74 E-value=2.3e+02 Score=23.18 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.5
Q ss_pred hhhHHHhhhhhhhhhhhc
Q 024093 182 RGVQKENKSLQDGFVSKI 199 (272)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~ 199 (272)
+.+++||..|.+.+..++
T Consensus 120 ~kLq~EN~~LV~RWM~rk 137 (152)
T 3a7p_A 120 SDLKKEHSQLVARWLKKT 137 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999986666544
No 18
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=29.18 E-value=2.2 Score=31.47 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=20.8
Q ss_pred EEEEEeccCcccccccCCcchhhhhHHHHhhhc
Q 024093 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (272)
Q Consensus 43 ValIifS~~GKl~e~~sps~~~kkIidRYq~~s 75 (272)
|+||+|+| +|+.+.+. ++-+.+..|++..
T Consensus 16 VaLlvfGp-kkLP~l~r---~lGk~ir~fK~~~ 44 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR---AAGRTLLEFKSAT 44 (78)
T ss_dssp HHHHHSCT-TTHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH---HHHHHHHHHHHHH
Confidence 67899998 78887754 4556677776654
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.65 E-value=30 Score=36.78 Aligned_cols=21 Identities=10% Similarity=0.082 Sum_probs=8.7
Q ss_pred hhhHHHhhhhhhhhhhhcccc
Q 024093 182 RGVQKENKSLQDGFVSKISCL 202 (272)
Q Consensus 182 ~~~~~~~~~l~~~~~~~~~~~ 202 (272)
..+++.+..+.+.+-.+|+.|
T Consensus 1008 ~~lee~~~~~~~~L~~kv~~L 1028 (1080)
T 2dfs_A 1008 KTIEEWADKYKHETEQLVSEL 1028 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333444443
No 20
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=27.96 E-value=12 Score=27.38 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=28.0
Q ss_pred hHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhhcc
Q 024093 29 FKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (272)
Q Consensus 29 ~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~s~ 76 (272)
+|+|+|.+.+++=|.|++.|.. +-+-|+||-....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-------------~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-------------VLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-------------HHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHH-------------HHHHHHHHHHhcC
Confidence 5899999999999998877765 3567888877654
No 21
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=26.60 E-value=41 Score=22.76 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=23.6
Q ss_pred hhhhhHHHhhhhhhhhhhhccccchhhhhhHHHHHHhhh
Q 024093 180 QVRGVQKENKSLQDGFVSKISCLSSIFLITEDIKQRIKT 218 (272)
Q Consensus 180 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (272)
||.-|..||..|+..+-.--+.++++--.+.+.++..+.
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~ 49 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence 446666677777755554444555555566666666554
No 22
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.99 E-value=25 Score=27.03 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhcc
Q 024093 140 DQVLARQINTFKRKV 154 (272)
Q Consensus 140 ~qli~~Qi~~lkkK~ 154 (272)
...+..+++.|+.++
T Consensus 77 ~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 77 HSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445677788888877
No 23
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.92 E-value=2.5e+02 Score=21.52 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=30.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 024093 112 SLNDLTLEELTGLEQDILDGLKIIHECKDQVLA 144 (272)
Q Consensus 112 dL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~ 144 (272)
++++||.++|+.+-..|-..+..+-+-|+-+-.
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~ 70 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQE 70 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 899999999999999999999999999988743
No 24
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.86 E-value=83 Score=18.00 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=8.7
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 024093 89 ENLGAVEQVNRILKKQIR 106 (272)
Q Consensus 89 eeL~kLKe~n~~LrkeiR 106 (272)
.+++.|.+...+|++.+|
T Consensus 8 keledlqerlrklrkklr 25 (27)
T 3twe_A 8 KELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 344445555555554443
No 25
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.27 E-value=1.5e+02 Score=22.73 Aligned_cols=11 Identities=27% Similarity=0.289 Sum_probs=7.8
Q ss_pred hhhHHHhhhhh
Q 024093 182 RGVQKENKSLQ 192 (272)
Q Consensus 182 ~~~~~~~~~l~ 192 (272)
+.|..||..|+
T Consensus 75 erL~~ENq~L~ 85 (104)
T 3s9g_A 75 DRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777777766
No 26
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.93 E-value=2.7e+02 Score=21.72 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 115 ~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
|+|++|+..+-...+.+-..+.++ ..++.++++.+..+.
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i 97 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRI 97 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHH
Confidence 688888888776555443333333 345566666666666
No 27
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=22.72 E-value=63 Score=23.50 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhh
Q 024093 141 QVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQ 192 (272)
Q Consensus 141 qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 192 (272)
.++.++|..|..+. ..|+.||.-|+
T Consensus 18 evLKe~I~EL~e~~---------------------------~qLE~EN~~Lk 42 (78)
T 1dip_A 18 EILKEQIRELVEKN---------------------------SQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHH---------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------------------HHHHHHHHHHH
Confidence 45678888888888 88888998887
No 28
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.27 E-value=1.6e+02 Score=18.86 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHH
Q 024093 114 NDLTLEELTGLEQDILDGLKIIHECK 139 (272)
Q Consensus 114 ~~LSleEL~~LEq~LE~sL~~VR~RK 139 (272)
+++|.+||-.||..|..--+.+-.-|
T Consensus 15 egfspeelaaleselqalekklaalk 40 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAALK 40 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999987765544444433
No 29
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.19 E-value=1.2e+02 Score=24.64 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=12.0
Q ss_pred chhhhhhHHHHHHhhhhch
Q 024093 203 SSIFLITEDIKQRIKTFEN 221 (272)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ 221 (272)
.++-..++.|++|+-.|-+
T Consensus 143 E~LkvENE~vkerl~mYR~ 161 (167)
T 4gkw_A 143 EKLSMENENLKEKIAHYRA 161 (167)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhhhHhHHHHHHHHHH
Confidence 4455567777777765544
No 30
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=22.08 E-value=2.8e+02 Score=21.69 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=47.7
Q ss_pred hhhhhHHHHhhhccc------cccchhhhhhhhhhhHHHHHHHHHHHHHHhhcc--CcCCCCCHHHHHHHHHHHHHhHHH
Q 024093 63 TTKQLLDLYQKTLRV------DLWSSHYEKMLENLGAVEQVNRILKKQIRQRMG--ESLNDLTLEELTGLEQDILDGLKI 134 (272)
Q Consensus 63 ~~kkIidRYq~~s~~------~l~~~~~EklqeeL~kLKe~n~~LrkeiRql~G--edL~~LSleEL~~LEq~LE~sL~~ 134 (272)
.+..++.+|...... .-.......++..+..++...+.|++.++-... ... +|+..||..-.+.+...-..
T Consensus 42 ~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF-~l~~~Ei~~Rr~fV~~~r~~ 120 (130)
T 4dnd_A 42 TARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF-KLPAGDLQERKVFVERMREA 120 (130)
T ss_dssp HHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence 345667777654321 111222334666777788888888887764332 223 48888888888777777777
Q ss_pred HHHHHHHH
Q 024093 135 IHECKDQV 142 (272)
Q Consensus 135 VR~RK~ql 142 (272)
|..-|.++
T Consensus 121 I~~mk~~l 128 (130)
T 4dnd_A 121 VQEMKDHM 128 (130)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666554
No 31
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.98 E-value=87 Score=21.64 Aligned_cols=31 Identities=16% Similarity=0.212 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhHhhhhhhhhhhhhHHHhhhhh
Q 024093 131 GLKIIHECKDQVLARQINTFKRKVCSVCHIILKTYDSSLSFILLFVGNFQVRGVQKENKSLQ 192 (272)
Q Consensus 131 sL~~VR~RK~qli~~Qi~~lkkK~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~l~ 192 (272)
+-.+.|.||. ..++.|..++ ..|..+|..|.
T Consensus 20 AArrsR~RK~----~~~~~Le~~v---------------------------~~L~~eN~~L~ 50 (63)
T 2dgc_A 20 AARRSRARKL----QRMKQLEDKV---------------------------EELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHH----HHHHHHHHHH---------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHH---------------------------HHHHHHHHHHH
Confidence 4456666764 4456788888 88888998887
No 32
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=20.94 E-value=2.4e+02 Score=20.40 Aligned_cols=11 Identities=18% Similarity=0.341 Sum_probs=8.0
Q ss_pred hhhhHHHHhhh
Q 024093 64 TKQLLDLYQKT 74 (272)
Q Consensus 64 ~kkIidRYq~~ 74 (272)
+...+.+|+..
T Consensus 3 ~Q~~i~~f~~l 13 (107)
T 1fxk_A 3 VQHQLAQFQQL 13 (107)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 46778888776
Done!