Query 024093
Match_columns 272
No_of_seqs 280 out of 1632
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 18:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024093.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024093hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1egwa_ d.88.1.1 (A:) Myocyte 100.0 2.1E-35 1.5E-39 217.7 4.1 70 2-73 1-70 (71)
2 d1srsa_ d.88.1.1 (A:) Serum re 100.0 1.6E-33 1.2E-37 213.2 2.9 72 1-74 2-73 (84)
3 d1mnma_ d.88.1.1 (A:) MCM1 tra 100.0 3.1E-33 2.3E-37 212.5 3.2 71 2-74 3-73 (85)
4 d2oa5a1 d.362.1.1 (A:7-102) Un 42.1 35 0.0026 24.2 6.4 64 83-149 3-68 (96)
5 d1kafa_ d.199.1.1 (A:) DNA-bin 40.2 2 0.00014 31.4 -0.8 54 4-74 21-75 (108)
6 d1bjta_ e.11.1.1 (A:) DNA topo 30.2 87 0.0063 29.5 9.1 27 44-74 556-582 (760)
7 d1a8la2 c.47.1.2 (A:120-226) P 24.6 31 0.0023 23.2 3.5 39 29-72 3-41 (107)
8 d1fo5a_ c.47.1.1 (A:) MJ0307, 22.7 37 0.0027 21.8 3.5 30 41-75 2-31 (85)
9 d1q08a_ a.6.1.3 (A:) Transcrip 16.8 1E+02 0.0075 20.7 5.0 40 115-154 16-55 (94)
10 d2vgba3 c.49.1.1 (A:440-573) P 16.2 33 0.0024 24.9 2.2 26 27-53 15-40 (134)
No 1
>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=2.1e-35 Score=217.68 Aligned_cols=70 Identities=43% Similarity=0.743 Sum_probs=68.1
Q ss_pred CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhh
Q 024093 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (272)
Q Consensus 2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~ 73 (272)
||+||+|++|||+.+|+|||||||+||||||+||||||||+||||||||+|++|+|+||+ +++|++||++
T Consensus 1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~--~~~vl~ry~~ 70 (71)
T d1egwa_ 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTE 70 (71)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC--HHHHHHHHHH
T ss_pred CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999999999999999985 7899999986
No 2
>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.97 E-value=1.6e-33 Score=213.18 Aligned_cols=72 Identities=32% Similarity=0.477 Sum_probs=68.8
Q ss_pred CCcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhh
Q 024093 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (272)
Q Consensus 1 MgR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~ 74 (272)
+||+||+|++|||+.+|+|||||||+||||||+||||||||+||||||||+|++|+|+||+ ++.++++|+..
T Consensus 2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~--~~~vi~~~~~~ 73 (84)
T d1srsa_ 2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETGK 73 (84)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGG--GHHHHSSHHHH
T ss_pred CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCC--HHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999985 68999999753
No 3
>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.97 E-value=3.1e-33 Score=212.49 Aligned_cols=71 Identities=38% Similarity=0.569 Sum_probs=68.6
Q ss_pred CcccceeEEeCCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhh
Q 024093 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (272)
Q Consensus 2 gR~KIeIkrIeN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~ 74 (272)
||+||+|++|+|+.+|+|||||||+||||||+||||||||+||||||||+|++|+|+||+ ++.|++||+..
T Consensus 3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~--v~~vl~r~~~~ 73 (85)
T d1mnma_ 3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEGR 73 (85)
T ss_dssp CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHHH
T ss_pred CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCC--HHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999986 68999999865
No 4
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=42.07 E-value=35 Score=24.17 Aligned_cols=64 Identities=14% Similarity=0.230 Sum_probs=39.3
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhc--cCcCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024093 83 HYEKMLENLGAVEQVNRILKKQIRQRM--GESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINT 149 (272)
Q Consensus 83 ~~EklqeeL~kLKe~n~~LrkeiRql~--GedL~~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~ 149 (272)
..|.|..+|.+|+-+|..|++.+++-- +.+-.-|+..+=..+-...-.+|...-. +.|..++.+
T Consensus 3 t~EeLaaeL~rL~~ENk~LKkkl~~~~~~~~~d~~LT~~qke~~I~s~~~~lts~A~---kKIe~kV~~ 68 (96)
T d2oa5a1 3 TYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAM---RKIEAKVRS 68 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 357788999999999999999888742 3344568888766665555555554444 344444443
No 5
>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the transcription factor MotA {Bacteriophage T4 [TaxId: 10665]}
Probab=40.20 E-value=2 Score=31.39 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=38.3
Q ss_pred ccceeEEe-CCCccchhhhhhhccchhHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHhhh
Q 024093 4 GKMEMKRI-ENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (272)
Q Consensus 4 ~KIeIkrI-eN~t~RqvTFsKRR~GL~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq~~ 74 (272)
-+|++|.| +|.+|=+|+|+||-+|+-| +=.-.+|.+--|+..= +++.+..|...
T Consensus 21 n~i~lk~v~inRsNyev~f~krT~GiR~---------------fEi~n~G~~RIfgYkm--~e~~~q~Ft~l 75 (108)
T d1kafa_ 21 NGFVLKKVEIYRSNYLAILEKRTNGIRN---------------FEINNNGNMRIFGYKM--MEHHIQKFTDI 75 (108)
T ss_dssp TTCCEEEEEEETTEEEEEEEEEETTEEE---------------EEECTTSEEEEEEESC--CHHHHHHHHTT
T ss_pred cceeEeeeeeccccceeehhhhcCceeE---------------EEEecCCcEEEEeeec--cHHHHHHHhhc
Confidence 36888888 4788899999999999743 2233667777666542 35677777665
No 6
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.22 E-value=87 Score=29.46 Aligned_cols=27 Identities=15% Similarity=0.303 Sum_probs=21.3
Q ss_pred EEEEeccCcccccccCCcchhhhhHHHHhhh
Q 024093 44 SILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (272)
Q Consensus 44 alIifS~~GKl~e~~sps~~~kkIidRYq~~ 74 (272)
-+++|.+.|++..|.+ +++|++.|-..
T Consensus 556 Nm~l~d~~g~i~k~~s----l~eIL~~f~~~ 582 (760)
T d1bjta_ 556 NMVAFDPHGKIKKYNS----VNEILSEFYYV 582 (760)
T ss_dssp TEEEECTTSCEEEESS----HHHHHHHHHHH
T ss_pred ceeEEcCCCcccchhh----HHHHHHHHHHH
Confidence 3788999999999965 46888888654
No 7
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=24.57 E-value=31 Score=23.20 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=29.5
Q ss_pred hHHHHHHhhhcCCcEEEEEeccCcccccccCCcchhhhhHHHHh
Q 024093 29 FKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQ 72 (272)
Q Consensus 29 ~KKA~ELSVLCDaeValIifS~~GKl~e~~sps~~~kkIidRYq 72 (272)
.+-..|...--|-.|.|++|.. .||.|+-.+..+++++.
T Consensus 3 ~~~~~e~~~~~~~~v~i~~F~a-----~wC~~C~~~~p~~~~la 41 (107)
T d1a8la2 3 MDETKQAIRNIDQDVRILVFVT-----PTCPYCPLAVRMAHKFA 41 (107)
T ss_dssp CHHHHHHHTTCCSCEEEEEEEC-----SSCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCeEEEEEEc-----CccccchhhChhHHhhh
Confidence 3445566666788899999985 68999987888888774
No 8
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=22.71 E-value=37 Score=21.81 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=22.8
Q ss_pred CcEEEEEeccCcccccccCCcchhhhhHHHHhhhc
Q 024093 41 AKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (272)
Q Consensus 41 aeValIifS~~GKl~e~~sps~~~kkIidRYq~~s 75 (272)
.+|.|++|+. +||.|+-.+..++++.....
T Consensus 2 ~kv~v~~F~a-----~wC~~C~~~~p~~~~~~~~~ 31 (85)
T d1fo5a_ 2 SKVKIELFTS-----PMCPHCPAAKRVVEEVANEM 31 (85)
T ss_dssp CCEEEEEEEC-----CCSSCCCTHHHHHHHHHHHC
T ss_pred CceEEEEEEC-----CCCcChHhhhhhcccccccc
Confidence 3678999987 69999987777777766543
No 9
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia coli [TaxId: 562]}
Probab=16.84 E-value=1e+02 Score=20.73 Aligned_cols=40 Identities=10% Similarity=0.192 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcc
Q 024093 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (272)
Q Consensus 115 ~LSleEL~~LEq~LE~sL~~VR~RK~qli~~Qi~~lkkK~ 154 (272)
|+|++|++.|-...+..-..--..-..++.+++..+..++
T Consensus 16 GFsL~EI~~ll~l~~~~~~~~c~~v~~l~~~kl~~i~~kI 55 (94)
T d1q08a_ 16 GFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARI 55 (94)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 3777788777654432211111122345667777777777
No 10
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.21 E-value=33 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.1
Q ss_pred chhHHHHHHhhhcCCcEEEEEeccCcc
Q 024093 27 GLFKKARELTILCDAKVSILICSSTAK 53 (272)
Q Consensus 27 GL~KKA~ELSVLCDaeValIifS~~GK 53 (272)
-+-+=|-+++.-++|. |+|+|+.+|.
T Consensus 15 aia~sav~~A~~l~a~-aIvv~T~sG~ 40 (134)
T d2vgba3 15 VTAIGAVEAAFKCCAA-AIIVLTTTGR 40 (134)
T ss_dssp HHHHHHHHHHHHHTCS-EEEEECSSSH
T ss_pred HHHHHHHHHHHhCCCC-EEEEEcCCcH
Confidence 3445578999999999 4999999886
Done!