Query 024094
Match_columns 272
No_of_seqs 249 out of 1512
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2202 U2 snRNP splicing fact 100.0 6.7E-33 1.4E-37 245.7 11.5 141 1-141 51-192 (260)
2 KOG0113 U1 small nuclear ribon 99.7 1.5E-16 3.3E-21 144.1 11.2 83 26-108 109-195 (335)
3 KOG0107 Alternative splicing f 99.7 1.6E-15 3.6E-20 128.5 12.7 66 29-98 21-86 (195)
4 KOG4207 Predicted splicing fac 99.7 8E-16 1.7E-20 133.5 10.8 72 25-96 20-92 (256)
5 TIGR01642 U2AF_lg U2 snRNP aux 99.5 6.9E-14 1.5E-18 136.9 9.3 86 16-101 415-506 (509)
6 smart00361 RRM_1 RNA recogniti 99.5 2.7E-13 5.9E-18 99.3 8.8 63 30-92 4-70 (70)
7 PF13893 RRM_5: RNA recognitio 99.5 4E-13 8.7E-18 93.8 8.2 56 35-94 1-56 (56)
8 TIGR01622 SF-CC1 splicing fact 99.4 2E-13 4.3E-18 132.2 8.9 83 16-101 368-452 (457)
9 PLN03134 glycine-rich RNA-bind 99.4 2.8E-13 6E-18 113.1 8.1 71 26-96 42-113 (144)
10 TIGR01645 half-pint poly-U bin 99.4 4.5E-13 9.7E-18 134.1 10.0 83 16-101 520-607 (612)
11 KOG0120 Splicing factor U2AF, 99.4 7.6E-13 1.6E-17 128.9 9.2 86 16-101 405-496 (500)
12 KOG0147 Transcriptional coacti 99.4 5E-13 1.1E-17 129.5 7.7 82 16-101 449-532 (549)
13 KOG0415 Predicted peptidyl pro 99.4 1.6E-13 3.4E-18 127.2 3.7 93 33-125 254-353 (479)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.6E-12 3.4E-17 121.4 8.3 73 26-98 277-350 (352)
15 PF00076 RRM_1: RNA recognitio 99.3 9.2E-12 2E-16 88.9 7.5 62 29-90 9-70 (70)
16 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.2 1.7E-11 3.8E-16 114.4 7.8 68 29-96 14-82 (352)
17 TIGR01659 sex-lethal sex-letha 99.2 2E-11 4.4E-16 115.4 6.8 71 26-96 115-186 (346)
18 KOG0122 Translation initiation 99.2 3.2E-11 7E-16 107.2 7.3 71 27-97 198-269 (270)
19 KOG0121 Nuclear cap-binding pr 99.2 3E-11 6.6E-16 98.1 6.0 68 27-94 45-113 (153)
20 KOG1548 Transcription elongati 99.2 9.1E-11 2E-15 108.6 8.9 78 16-96 271-351 (382)
21 smart00360 RRM RNA recognition 99.2 1.5E-10 3.2E-15 80.9 7.6 64 29-92 7-71 (71)
22 PF14259 RRM_6: RNA recognitio 99.1 2E-10 4.3E-15 82.9 8.0 62 29-90 9-70 (70)
23 KOG0130 RNA-binding protein RB 99.1 4.3E-11 9.3E-16 98.1 4.9 71 26-96 80-151 (170)
24 KOG0148 Apoptosis-promoting RN 99.1 6.1E-11 1.3E-15 106.8 6.1 69 30-98 74-143 (321)
25 TIGR01659 sex-lethal sex-letha 99.1 1.9E-10 4.2E-15 108.8 8.4 71 27-97 202-275 (346)
26 smart00362 RRM_2 RNA recogniti 99.1 5.6E-10 1.2E-14 78.3 8.3 61 31-92 12-72 (72)
27 KOG0125 Ataxin 2-binding prote 99.1 2.5E-10 5.4E-15 105.2 6.7 68 28-96 106-173 (376)
28 TIGR01628 PABP-1234 polyadenyl 99.1 3.7E-10 8E-15 112.5 8.2 72 28-99 295-366 (562)
29 PLN03120 nucleic acid binding 99.0 5.1E-10 1.1E-14 101.3 7.1 66 28-96 14-79 (260)
30 cd00590 RRM RRM (RNA recogniti 99.0 2.6E-09 5.6E-14 75.3 9.1 64 30-93 11-74 (74)
31 TIGR01622 SF-CC1 splicing fact 99.0 6.7E-10 1.5E-14 107.6 7.8 72 27-98 195-267 (457)
32 TIGR01628 PABP-1234 polyadenyl 99.0 6.5E-10 1.4E-14 110.8 7.7 67 29-95 11-78 (562)
33 KOG0127 Nucleolar protein fibr 99.0 4.9E-10 1.1E-14 109.0 6.3 72 27-98 126-197 (678)
34 TIGR01645 half-pint poly-U bin 99.0 5.2E-10 1.1E-14 112.3 6.4 68 27-94 116-184 (612)
35 KOG0126 Predicted RNA-binding 99.0 4.1E-11 8.8E-16 102.6 -2.2 68 27-94 44-112 (219)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.4E-09 3E-14 106.7 8.1 71 26-96 303-374 (509)
37 COG0724 RNA-binding proteins ( 98.9 2.4E-09 5.2E-14 92.8 7.1 69 27-95 124-193 (306)
38 PLN03121 nucleic acid binding 98.9 3.1E-09 6.7E-14 95.1 6.9 66 27-95 14-79 (243)
39 KOG0105 Alternative splicing f 98.9 1.6E-09 3.6E-14 93.1 4.8 65 31-97 19-83 (241)
40 KOG0144 RNA-binding protein CU 98.9 2.4E-09 5.1E-14 101.8 6.3 73 29-101 135-210 (510)
41 PLN03213 repressor of silencin 98.9 2.5E-09 5.3E-14 103.2 6.4 68 26-96 18-87 (759)
42 KOG0114 Predicted RNA-binding 98.9 3.7E-09 8E-14 83.2 6.0 70 26-98 26-96 (124)
43 TIGR01648 hnRNP-R-Q heterogene 98.9 4.4E-09 9.5E-14 105.3 7.3 64 27-97 242-307 (578)
44 TIGR01648 hnRNP-R-Q heterogene 98.9 3.1E-09 6.6E-14 106.4 6.2 69 26-94 66-135 (578)
45 KOG0108 mRNA cleavage and poly 98.8 3.8E-09 8.2E-14 102.3 6.3 73 26-98 26-99 (435)
46 KOG0117 Heterogeneous nuclear 98.8 5.7E-09 1.2E-13 99.6 7.1 68 28-95 93-162 (506)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 8.5E-09 1.8E-13 101.4 8.6 65 29-97 287-351 (481)
48 KOG0148 Apoptosis-promoting RN 98.8 1.5E-08 3.2E-13 91.6 7.4 63 30-97 176-238 (321)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 1.3E-08 2.9E-13 100.0 7.5 64 28-96 12-77 (481)
50 KOG0111 Cyclophilin-type pepti 98.8 6.2E-09 1.4E-13 91.7 4.2 69 29-97 21-90 (298)
51 KOG0145 RNA-binding protein EL 98.8 1.6E-08 3.4E-13 91.1 6.8 68 29-96 52-120 (360)
52 KOG0110 RNA-binding protein (R 98.7 3E-08 6.5E-13 99.1 8.5 107 26-138 523-637 (725)
53 KOG0149 Predicted RNA-binding 98.7 1.3E-08 2.9E-13 90.2 5.4 70 26-96 20-90 (247)
54 KOG0147 Transcriptional coacti 98.7 1.4E-08 3.1E-13 98.9 5.4 71 26-96 286-357 (549)
55 KOG4206 Spliceosomal protein s 98.7 4.4E-08 9.5E-13 86.4 7.0 68 27-96 22-89 (221)
56 KOG0123 Polyadenylate-binding 98.7 5.2E-08 1.1E-12 93.0 7.9 69 31-101 89-157 (369)
57 KOG0123 Polyadenylate-binding 98.7 3.9E-08 8.4E-13 93.9 6.7 68 28-97 8-75 (369)
58 KOG1996 mRNA splicing factor [ 98.7 4.6E-08 9.9E-13 89.3 6.5 83 16-101 287-371 (378)
59 KOG0127 Nucleolar protein fibr 98.6 5.3E-08 1.1E-12 95.1 6.7 71 26-96 300-377 (678)
60 KOG0131 Splicing factor 3b, su 98.6 5.8E-08 1.3E-12 83.3 5.5 66 30-95 21-87 (203)
61 KOG0124 Polypyrimidine tract-b 98.6 3.4E-08 7.3E-13 92.5 3.5 67 27-93 122-189 (544)
62 KOG0117 Heterogeneous nuclear 98.6 1.4E-07 3E-12 90.3 7.6 65 27-98 268-332 (506)
63 KOG0109 RNA-binding protein LA 98.6 6.7E-08 1.4E-12 88.2 4.8 59 31-96 91-149 (346)
64 KOG0124 Polypyrimidine tract-b 98.6 1.5E-07 3.3E-12 88.2 7.2 82 15-99 451-537 (544)
65 KOG0144 RNA-binding protein CU 98.5 1.9E-07 4.2E-12 89.0 6.5 68 29-96 45-116 (510)
66 KOG4208 Nucleolar RNA-binding 98.5 2.9E-07 6.2E-12 80.4 6.9 71 27-97 58-130 (214)
67 KOG0145 RNA-binding protein EL 98.5 4E-07 8.6E-12 82.2 7.9 65 32-96 292-357 (360)
68 KOG0146 RNA-binding protein ET 98.4 4.9E-07 1.1E-11 81.9 6.6 70 30-99 31-103 (371)
69 KOG0110 RNA-binding protein (R 98.4 3.7E-07 8.1E-12 91.4 4.8 74 26-99 621-695 (725)
70 KOG0109 RNA-binding protein LA 98.3 6.8E-07 1.5E-11 81.7 5.7 61 30-97 14-74 (346)
71 KOG0146 RNA-binding protein ET 98.3 4.2E-07 9.2E-12 82.3 3.8 65 33-97 300-365 (371)
72 KOG4212 RNA-binding protein hn 98.3 1.4E-06 3.1E-11 83.3 6.9 69 26-94 52-121 (608)
73 KOG0106 Alternative splicing f 98.2 5.2E-07 1.1E-11 79.9 2.2 63 27-96 10-72 (216)
74 KOG4661 Hsp27-ERE-TATA-binding 98.2 3.2E-06 7E-11 83.2 6.4 66 31-96 418-484 (940)
75 COG5175 MOT2 Transcriptional r 98.2 3.7E-06 8.1E-11 78.3 6.4 89 36-129 138-230 (480)
76 KOG0533 RRM motif-containing p 98.1 3.8E-06 8.3E-11 75.8 6.1 73 26-98 91-163 (243)
77 KOG0131 Splicing factor 3b, su 98.1 3.9E-06 8.4E-11 72.2 5.4 65 33-97 111-177 (203)
78 KOG0132 RNA polymerase II C-te 98.1 6.3E-06 1.4E-10 83.5 7.4 66 28-98 431-496 (894)
79 KOG4209 Splicing factor RNPS1, 98.0 3.4E-06 7.4E-11 75.8 3.6 70 26-96 109-179 (231)
80 KOG0153 Predicted RNA-binding 97.9 1.8E-05 4E-10 73.9 6.7 63 29-96 239-302 (377)
81 KOG4454 RNA binding protein (R 97.8 2.1E-05 4.5E-10 69.7 4.8 68 29-97 20-87 (267)
82 KOG4676 Splicing factor, argin 97.8 4.2E-06 9.1E-11 79.2 0.4 53 29-85 162-214 (479)
83 KOG4660 Protein Mei2, essentia 97.7 1.1E-05 2.4E-10 79.1 1.6 61 29-93 86-146 (549)
84 KOG2314 Translation initiation 97.7 7.9E-05 1.7E-09 73.5 6.7 66 28-93 74-140 (698)
85 KOG1548 Transcription elongati 97.5 0.00018 3.9E-09 67.4 6.4 68 29-96 145-220 (382)
86 KOG4212 RNA-binding protein hn 97.5 0.00013 2.7E-09 70.3 4.7 65 26-94 544-608 (608)
87 KOG0116 RasGAP SH3 binding pro 97.5 9.6E-05 2.1E-09 71.6 4.0 66 27-93 297-363 (419)
88 KOG1190 Polypyrimidine tract-b 97.5 0.00034 7.4E-09 66.9 7.2 69 27-99 307-375 (492)
89 KOG1457 RNA binding protein (c 97.4 0.00047 1E-08 61.4 7.4 67 32-98 48-119 (284)
90 KOG4205 RNA-binding protein mu 97.4 7.3E-05 1.6E-09 69.9 2.2 68 26-94 14-82 (311)
91 PF08952 DUF1866: Domain of un 97.4 0.00074 1.6E-08 56.5 7.3 63 29-100 47-109 (146)
92 KOG0106 Alternative splicing f 97.3 0.00015 3.4E-09 64.3 2.5 55 30-91 111-165 (216)
93 PF08777 RRM_3: RNA binding mo 97.2 0.00074 1.6E-08 53.5 5.3 61 30-95 13-78 (105)
94 PF14605 Nup35_RRM_2: Nup53/35 97.2 0.00096 2.1E-08 46.4 5.2 40 32-76 14-53 (53)
95 KOG4205 RNA-binding protein mu 97.2 0.00026 5.6E-09 66.3 2.8 74 27-101 106-180 (311)
96 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0019 4.1E-08 50.8 6.8 64 30-94 17-89 (100)
97 KOG0226 RNA-binding proteins [ 97.1 0.00044 9.5E-09 62.5 3.5 64 31-94 203-267 (290)
98 KOG0151 Predicted splicing reg 96.8 0.0017 3.7E-08 65.8 5.2 68 29-96 185-256 (877)
99 KOG0120 Splicing factor U2AF, 96.8 0.00093 2E-08 66.0 3.3 68 29-96 300-368 (500)
100 PF11608 Limkain-b1: Limkain b 96.8 0.0053 1.1E-07 46.9 6.4 60 29-97 17-77 (90)
101 KOG1365 RNA-binding protein Fu 96.7 0.0015 3.3E-08 62.1 3.7 76 26-101 288-366 (508)
102 KOG4211 Splicing factor hnRNP- 96.7 0.0026 5.6E-08 62.1 5.2 66 26-94 18-83 (510)
103 PF04059 RRM_2: RNA recognitio 96.6 0.015 3.1E-07 45.6 8.3 73 17-98 11-88 (97)
104 KOG1456 Heterogeneous nuclear 96.6 0.0047 1E-07 58.7 6.2 69 26-98 130-200 (494)
105 PF11767 SET_assoc: Histone ly 96.4 0.013 2.9E-07 42.6 6.6 54 31-92 13-66 (66)
106 KOG1995 Conserved Zn-finger pr 96.4 0.0026 5.6E-08 59.9 3.1 67 30-96 78-153 (351)
107 KOG1456 Heterogeneous nuclear 96.3 0.012 2.5E-07 56.1 7.0 63 30-96 300-362 (494)
108 KOG2068 MOT2 transcription fac 96.3 0.0018 3.9E-08 60.6 1.5 83 37-124 99-185 (327)
109 KOG4307 RNA binding protein RB 96.3 0.0073 1.6E-07 61.3 5.7 67 27-93 876-943 (944)
110 KOG1190 Polypyrimidine tract-b 96.2 0.0048 1E-07 59.2 4.1 69 26-98 158-229 (492)
111 PF04847 Calcipressin: Calcipr 96.1 0.017 3.6E-07 50.4 6.4 65 30-99 7-73 (184)
112 KOG4211 Splicing factor hnRNP- 96.0 0.0045 9.7E-08 60.5 3.0 76 26-102 111-187 (510)
113 KOG4210 Nuclear localization s 96.0 0.0022 4.7E-08 59.5 0.7 71 26-97 193-264 (285)
114 KOG1855 Predicted RNA-binding 95.9 0.0055 1.2E-07 59.0 3.1 53 29-81 242-308 (484)
115 PF15023 DUF4523: Protein of u 95.6 0.036 7.9E-07 46.4 6.2 55 33-94 105-159 (166)
116 KOG4206 Spliceosomal protein s 95.5 0.034 7.4E-07 49.5 6.2 62 30-95 158-220 (221)
117 KOG4285 Mitotic phosphoprotein 95.1 0.043 9.2E-07 51.0 5.5 56 33-95 211-266 (350)
118 KOG2135 Proteins containing th 94.6 0.02 4.3E-07 55.9 2.1 61 30-96 385-445 (526)
119 KOG4368 Predicted RNA binding 94.4 0.12 2.5E-06 51.9 6.9 14 144-157 606-619 (757)
120 PF08675 RNA_bind: RNA binding 93.6 0.14 3.1E-06 39.0 4.6 41 33-80 23-63 (87)
121 KOG1457 RNA binding protein (c 93.4 0.1 2.2E-06 46.8 4.0 53 29-84 221-273 (284)
122 PF03880 DbpA: DbpA RNA bindin 92.9 0.34 7.3E-06 35.6 5.7 54 33-94 16-74 (74)
123 KOG4368 Predicted RNA binding 92.5 0.081 1.7E-06 53.0 2.4 9 144-152 602-610 (757)
124 KOG4676 Splicing factor, argin 92.3 0.15 3.2E-06 49.0 3.9 63 30-93 19-85 (479)
125 KOG2416 Acinus (induces apopto 92.3 0.069 1.5E-06 53.6 1.7 68 32-104 458-529 (718)
126 KOG1365 RNA-binding protein Fu 92.3 0.19 4.2E-06 48.2 4.5 65 26-91 169-237 (508)
127 KOG0128 RNA-binding protein SA 92.2 0.034 7.4E-07 57.7 -0.7 71 26-96 744-814 (881)
128 KOG4574 RNA-binding protein (c 91.6 0.13 2.9E-06 53.5 2.9 66 30-100 310-377 (1007)
129 PF10309 DUF2414: Protein of u 91.5 0.55 1.2E-05 33.8 5.2 41 33-79 19-62 (62)
130 KOG0112 Large RNA-binding prot 91.4 0.18 3.8E-06 52.9 3.5 58 33-95 470-529 (975)
131 KOG0128 RNA-binding protein SA 91.0 0.053 1.1E-06 56.3 -0.6 66 27-92 676-742 (881)
132 KOG2591 c-Mpl binding protein, 90.6 0.26 5.7E-06 49.3 3.7 56 32-93 189-248 (684)
133 PF00642 zf-CCCH: Zinc finger 89.6 0.097 2.1E-06 31.2 -0.1 26 99-124 1-27 (27)
134 smart00356 ZnF_C3H1 zinc finge 88.8 0.24 5.3E-06 28.7 1.3 25 99-123 2-26 (27)
135 KOG0115 RNA-binding protein p5 85.6 0.8 1.7E-05 41.8 3.3 64 30-93 43-110 (275)
136 KOG4307 RNA binding protein RB 85.2 0.37 8E-06 49.5 1.0 73 27-99 443-516 (944)
137 PF07576 BRAP2: BRCA1-associat 84.6 4 8.7E-05 32.6 6.5 54 32-86 27-81 (110)
138 KOG3152 TBP-binding protein, a 84.5 0.4 8.7E-06 43.7 0.8 56 34-89 90-158 (278)
139 KOG2253 U1 snRNP complex, subu 83.6 0.93 2E-05 46.2 3.0 59 27-93 49-107 (668)
140 PF15513 DUF4651: Domain of un 78.9 6.1 0.00013 28.4 5.0 24 29-52 5-28 (62)
141 KOG4213 RNA-binding protein La 77.0 5.5 0.00012 34.7 5.1 63 28-93 119-183 (205)
142 KOG0105 Alternative splicing f 76.0 5.6 0.00012 34.9 5.0 50 31-86 128-177 (241)
143 PF03439 Spt5-NGN: Early trans 73.0 6.2 0.00013 29.7 4.1 38 44-85 33-70 (84)
144 KOG2318 Uncharacterized conser 71.9 12 0.00027 37.9 6.9 36 61-96 270-307 (650)
145 KOG0112 Large RNA-binding prot 71.7 1.2 2.6E-05 47.0 -0.2 66 29-94 383-448 (975)
146 KOG0835 Cyclin L [General func 70.2 7.8 0.00017 36.8 4.8 27 58-85 172-198 (367)
147 KOG4019 Calcineurin-mediated s 70.1 4 8.8E-05 35.5 2.7 58 34-96 31-89 (193)
148 KOG4660 Protein Mei2, essentia 67.8 7.2 0.00016 39.2 4.3 43 56-98 428-474 (549)
149 KOG4849 mRNA cleavage factor I 67.4 3.5 7.6E-05 39.4 1.9 68 27-94 89-159 (498)
150 KOG0804 Cytoplasmic Zn-finger 67.0 11 0.00024 37.2 5.2 54 32-86 88-142 (493)
151 PRK08559 nusG transcription an 66.9 19 0.00041 30.1 6.2 49 31-83 21-70 (153)
152 KOG0151 Predicted splicing reg 65.9 6.1 0.00013 41.0 3.4 10 62-71 695-704 (877)
153 PF07530 PRE_C2HC: Associated 64.0 11 0.00024 27.4 3.6 60 33-95 2-63 (68)
154 KOG2888 Putative RNA binding p 60.6 4.4 9.5E-05 38.5 1.2 13 58-70 159-171 (453)
155 KOG1999 RNA polymerase II tran 59.3 22 0.00047 38.3 6.1 46 44-94 199-244 (1024)
156 KOG0796 Spliceosome subunit [R 58.7 6.3 0.00014 37.1 2.0 6 102-107 190-195 (319)
157 KOG2193 IGF-II mRNA-binding pr 57.4 12 0.00025 36.8 3.6 39 60-98 38-77 (584)
158 smart00596 PRE_C2HC PRE_C2HC d 56.5 15 0.00032 27.0 3.2 60 33-95 2-63 (69)
159 KOG0129 Predicted RNA-binding 54.0 18 0.00038 36.2 4.2 52 26-78 267-325 (520)
160 KOG0132 RNA polymerase II C-te 53.2 18 0.00039 38.0 4.3 14 31-44 127-140 (894)
161 CHL00123 rps6 ribosomal protei 48.1 53 0.0012 25.3 5.4 52 26-77 21-80 (97)
162 PF10567 Nab6_mRNP_bdg: RNA-re 47.9 52 0.0011 30.8 6.0 62 34-95 31-106 (309)
163 cd04905 ACT_CM-PDT C-terminal 46.0 1.1E+02 0.0024 22.0 6.6 50 32-81 15-68 (80)
164 KOG2888 Putative RNA binding p 46.0 17 0.00037 34.6 2.6 20 20-39 170-189 (453)
165 PF02714 DUF221: Domain of unk 45.7 23 0.0005 32.6 3.5 34 62-97 1-34 (325)
166 PF08544 GHMP_kinases_C: GHMP 44.3 90 0.002 22.3 5.9 46 31-80 35-80 (85)
167 cd04880 ACT_AAAH-PDT-like ACT 41.9 1.2E+02 0.0027 21.3 6.8 50 32-81 13-66 (75)
168 TIGR00405 L26e_arch ribosomal 41.5 87 0.0019 25.5 6.0 35 45-83 28-62 (145)
169 COG0018 ArgS Arginyl-tRNA synt 40.4 1.2E+02 0.0026 31.1 7.9 68 26-99 54-129 (577)
170 PF07237 DUF1428: Protein of u 39.9 1.9E+02 0.0041 22.9 7.5 56 24-79 14-85 (103)
171 PF08734 GYD: GYD domain; Int 39.2 1.7E+02 0.0037 22.2 7.5 59 19-81 7-69 (91)
172 PF03467 Smg4_UPF3: Smg-4/UPF3 37.3 48 0.001 28.5 3.9 42 58-99 54-100 (176)
173 COG5470 Uncharacterized conser 36.8 1.2E+02 0.0027 23.7 5.7 51 26-77 16-71 (96)
174 PRK11634 ATP-dependent RNA hel 36.2 2.2E+02 0.0047 29.4 9.2 35 60-95 527-561 (629)
175 PF11823 DUF3343: Protein of u 36.0 46 0.00099 24.0 3.1 28 61-88 3-30 (73)
176 KOG0129 Predicted RNA-binding 35.7 66 0.0014 32.3 5.0 46 33-78 385-432 (520)
177 PF06185 YecM: YecM protein; 35.6 1.4E+02 0.0029 26.2 6.4 67 20-94 4-78 (185)
178 PF03468 XS: XS domain; Inter 35.0 67 0.0015 25.7 4.2 38 33-72 32-69 (116)
179 COG1369 POP5 RNase P/RNase MRP 34.4 1.1E+02 0.0024 25.0 5.4 65 30-96 37-102 (124)
180 KOG1040 Polyadenylation factor 34.0 15 0.00032 34.9 0.2 26 98-123 74-99 (325)
181 PRK11230 glycolate oxidase sub 34.0 75 0.0016 31.7 5.3 60 34-95 205-268 (499)
182 KOG4210 Nuclear localization s 33.9 22 0.00048 33.0 1.4 63 34-96 104-167 (285)
183 cd04904 ACT_AAAH ACT domain of 33.7 1.7E+02 0.0036 20.9 5.9 49 33-81 15-65 (74)
184 PF07045 DUF1330: Protein of u 32.2 1.8E+02 0.0039 20.3 7.6 49 27-76 3-56 (65)
185 smart00738 NGN In Spt5p, this 30.7 76 0.0016 23.9 3.8 23 60-82 60-82 (106)
186 KOG2494 C3H1-type Zn-finger pr 30.5 22 0.00047 33.7 0.7 27 97-123 32-60 (331)
187 KOG2891 Surface glycoprotein [ 30.4 11 0.00024 35.2 -1.2 54 31-84 174-247 (445)
188 PF14111 DUF4283: Domain of un 30.2 28 0.0006 28.1 1.3 59 27-93 30-88 (153)
189 KOG3323 D-Tyr-tRNA (Tyr) deacy 29.5 1.1E+02 0.0024 25.6 4.6 42 21-68 99-147 (149)
190 COG2069 CdhD CO dehydrogenase/ 29.2 1.4E+02 0.0031 28.3 5.8 50 3-52 120-174 (403)
191 COG5507 Uncharacterized conser 29.1 66 0.0014 25.4 3.1 24 56-79 63-86 (117)
192 KOG1763 Uncharacterized conser 28.3 29 0.00063 32.5 1.2 30 97-126 88-117 (343)
193 KOG2193 IGF-II mRNA-binding pr 27.9 5.7 0.00012 38.9 -3.6 63 32-96 94-156 (584)
194 cd04909 ACT_PDH-BS C-terminal 27.9 2E+02 0.0044 19.6 6.7 47 33-80 16-63 (69)
195 TIGR00166 S6 ribosomal protein 25.5 2.3E+02 0.0049 21.3 5.5 50 28-77 17-74 (93)
196 KOG0862 Synaptobrevin/VAMP-lik 25.4 47 0.001 29.7 1.9 33 30-69 86-119 (216)
197 COG0858 RbfA Ribosome-binding 25.2 1.8E+02 0.0038 23.4 5.1 69 30-101 21-96 (118)
198 KOG0796 Spliceosome subunit [R 24.7 39 0.00085 31.9 1.3 6 70-75 148-153 (319)
199 PRK11700 hypothetical protein; 24.3 3.5E+02 0.0076 23.7 7.0 72 17-96 6-85 (187)
200 COG5252 Uncharacterized conser 24.2 34 0.00073 31.2 0.8 33 98-130 82-114 (299)
201 TIGR00387 glcD glycolate oxida 23.9 1.3E+02 0.0029 29.0 4.9 60 34-95 148-211 (413)
202 KOG4483 Uncharacterized conser 23.7 1.4E+02 0.003 29.4 4.8 40 32-77 405-445 (528)
203 cd04908 ACT_Bt0572_1 N-termina 23.0 2.6E+02 0.0056 19.1 6.8 43 33-78 16-59 (66)
204 PLN02805 D-lactate dehydrogena 23.0 1.5E+02 0.0033 30.1 5.3 61 34-96 282-346 (555)
205 PF14581 SseB_C: SseB protein 22.6 77 0.0017 24.4 2.5 70 25-94 14-88 (108)
206 KOG0107 Alternative splicing f 22.3 1.9E+02 0.0041 25.3 4.9 29 70-98 28-59 (195)
207 cd04889 ACT_PDH-BS-like C-term 22.2 2.4E+02 0.0052 18.5 6.1 42 33-76 13-55 (56)
208 KOG0156 Cytochrome P450 CYP2 s 21.8 2.6E+02 0.0057 27.9 6.6 50 31-89 48-97 (489)
209 KOG2187 tRNA uracil-5-methyltr 21.7 56 0.0012 33.0 1.8 38 57-94 61-98 (534)
210 PF02580 Tyr_Deacylase: D-Tyr- 21.6 2.8E+02 0.0061 23.2 5.8 37 17-53 94-136 (145)
211 cd00344 FBP_aldolase_I Fructos 21.1 3.2E+02 0.0069 26.1 6.6 87 8-95 171-290 (328)
212 KOG2814 Transcription coactiva 21.0 2.3E+02 0.0049 27.1 5.6 76 17-94 138-221 (345)
213 cd04931 ACT_PAH ACT domain of 20.2 3.9E+02 0.0085 20.2 6.1 49 32-80 28-79 (90)
214 COG0150 PurM Phosphoribosylami 20.1 47 0.001 31.7 0.9 47 33-82 276-322 (345)
No 1
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.7e-33 Score=245.68 Aligned_cols=141 Identities=60% Similarity=1.057 Sum_probs=135.2
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHh-ccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh
Q 024094 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELN-KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSL 79 (272)
Q Consensus 1 ~y~np~~~~~~~~~~~~~~~~~~~~~~yd~~~eDL~~~F~-kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~l 79 (272)
|||||....+.++++.+.+++++|+.+|++|+|||+.+|+ |||+|+++.|+++...|++|+|||.|..+++|++|+..|
T Consensus 51 myq~P~~~~~~~d~~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~l 130 (260)
T KOG2202|consen 51 MYQNPENSWERRDAQGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDL 130 (260)
T ss_pred HHhCCCCCchhhhhccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHH
Confidence 8999998888888888999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCeeCCeeEEEEeecCCCchhhhhhccccccCCCCCccccceecccChHHHHhhhcCccCC
Q 024094 80 SGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLKRISRDLRRQLFGRYRRR 141 (272)
Q Consensus 80 nG~~~~GR~I~ve~s~~~~~r~~~c~~~~~g~~~~g~~cn~~h~~~~~r~~~~~~~~~~~~~ 141 (272)
||+||.|++|+++|+++++|+.++|++|+.+.|.+|+.|||||++.+++.|.+.++++..+.
T Consensus 131 nnRw~~G~pi~ae~~pvT~~rea~C~~~e~~~C~rG~~CnFmH~k~~sr~L~r~l~~~~~~~ 192 (260)
T KOG2202|consen 131 NNRWYNGRPIHAELSPVTDFREAICGQFERTECSRGGACNFMHVKRLSRSLRRELYGRQRKR 192 (260)
T ss_pred cCccccCCcceeeecCcCchhhhhhcccccccCCCCCcCcchhhhhhhHHHHHHhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999998876544
No 2
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.5e-16 Score=144.13 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee---cCCCchh
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS---PVTDFRE 101 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s---~~~~~r~ 101 (272)
..|++.+..|+.+|++||+|+.|.|+.+ .+++++|||||+|+++.+...|++..+|..|+|+.|.|++- +++.|.+
T Consensus 109 LnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvkgW~P 188 (335)
T KOG0113|consen 109 LNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVKGWLP 188 (335)
T ss_pred ccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccccccc
Confidence 5789999999999999999999999965 78999999999999999999999999999999999999995 6688887
Q ss_pred hhhhccc
Q 024094 102 ATCRQYE 108 (272)
Q Consensus 102 ~~c~~~~ 108 (272)
...+..+
T Consensus 189 RRLGGGL 195 (335)
T KOG0113|consen 189 RRLGGGL 195 (335)
T ss_pred ccccCCc
Confidence 6665543
No 3
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=1.6e-15 Score=128.49 Aligned_cols=66 Identities=26% Similarity=0.406 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.+.+.||+.+|.+||+|.+|||..+. .|||||||++..||++|+..|+|+.|.|..|+||++....
T Consensus 21 ~a~k~eLE~~F~~yG~lrsvWvArnP----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 21 RATKRELERAFSKYGPLRSVWVARNP----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CcchHHHHHHHHhcCcceeEEEeecC----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 45678999999999999999999765 3999999999999999999999999999999999997654
No 4
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.65 E-value=8e-16 Score=133.51 Aligned_cols=72 Identities=24% Similarity=0.435 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 25 QEHFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 25 ~~~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
..-|-++-+||..+|+|||.|.+|.|+ +..+..++|||||.|....+|++|+.+|+|.+++|+.|.|+++.-
T Consensus 20 NLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 20 NLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 356778889999999999999999998 556788999999999999999999999999999999999999743
No 5
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.49 E-value=6.9e-14 Score=136.94 Aligned_cols=86 Identities=23% Similarity=0.482 Sum_probs=76.0
Q ss_pred CCCCChHHHh--HHHHHHHHHHHHHHhccCCeEEEEEeeCC----CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 024094 16 GNPLDPRKIQ--EHFEDFYEDLFEELNKYGEIESLNICDNL----ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPI 89 (272)
Q Consensus 16 ~~~~~~~~~~--~~yd~~~eDL~~~F~kfG~I~~i~v~~~~----~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I 89 (272)
.|||++++|. +.|++|.+||+++|++||.|+.|.|+.+. .+...|+|||+|++.++|++|+.+|||++|+|+.|
T Consensus 415 ~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 415 TNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred ccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 4788888885 68999999999999999999999998642 23457999999999999999999999999999999
Q ss_pred EEEeecCCCchh
Q 024094 90 IVDFSPVTDFRE 101 (272)
Q Consensus 90 ~ve~s~~~~~r~ 101 (272)
.|.|++...|..
T Consensus 495 ~~~~~~~~~~~~ 506 (509)
T TIGR01642 495 VAAFYGEDCYKA 506 (509)
T ss_pred EEEEeCHHHhhc
Confidence 999998877643
No 6
>smart00361 RRM_1 RNA recognition motif.
Probab=99.47 E-value=2.7e-13 Score=99.27 Aligned_cols=63 Identities=41% Similarity=0.790 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhccCCeEEEE-E-eeCCC--CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 024094 30 DFYEDLFEELNKYGEIESLN-I-CDNLA--DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 92 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~-v-~~~~~--~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve 92 (272)
+|++.+.++|++||+|.+|. | ++..+ ++++|||||+|.+.++|.+|++.|||++|+|++|+|.
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 45556666667999999995 3 44444 8899999999999999999999999999999999873
No 7
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.45 E-value=4e-13 Score=93.75 Aligned_cols=56 Identities=32% Similarity=0.714 Sum_probs=51.3
Q ss_pred HHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 35 LFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 35 L~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
|.++|++||+|..|.+..+. .++|||+|.+.++|..|+..|||..|.|++|.|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998754 489999999999999999999999999999999986
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.45 E-value=2e-13 Score=132.15 Aligned_cols=83 Identities=24% Similarity=0.480 Sum_probs=72.7
Q ss_pred CCCCChHHHh--HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 16 GNPLDPRKIQ--EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 16 ~~~~~~~~~~--~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
.+||++.++. .+|.+|++||+++|++||.|+.|.|+.+. ..|+|||+|.+.++|..|+++|||++|+|++|.|.|
T Consensus 368 ~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~---~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~ 444 (457)
T TIGR01622 368 SNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKN---SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAF 444 (457)
T ss_pred ecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCC---CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEE
Confidence 3566665543 68899999999999999999999998543 469999999999999999999999999999999999
Q ss_pred ecCCCchh
Q 024094 94 SPVTDFRE 101 (272)
Q Consensus 94 s~~~~~r~ 101 (272)
++...|..
T Consensus 445 ~~~~~~~~ 452 (457)
T TIGR01622 445 VVNDVYDM 452 (457)
T ss_pred EcHHHHHh
Confidence 99888754
No 9
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.44 E-value=2.8e-13 Score=113.08 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICD-NLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~-~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
-.+++.++||+++|++||+|++|.|+. ..+++++|||||+|++.++|++||+.|||..|+|++|+|+++..
T Consensus 42 L~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 42 LSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 456788899999999999999999974 45788999999999999999999999999999999999999753
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.43 E-value=4.5e-13 Score=134.10 Aligned_cols=83 Identities=24% Similarity=0.472 Sum_probs=74.2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHhccCCeEEEEEeeCCC-----CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 024094 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLA-----DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPII 90 (272)
Q Consensus 16 ~~~~~~~~~~~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~-----~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ 90 (272)
.|||++++|+++ |++||+++|+|||.|+.|.|+.... .|..|.+||+|.+.++|.+|+..|||++|+||+|+
T Consensus 520 ~NMv~~~elded---l~eDV~eEC~K~G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~~LnGR~F~GR~V~ 596 (612)
T TIGR01645 520 RNMVTPQDIDEF---LEGEIREECGKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKAALDGRFFGGRTVV 596 (612)
T ss_pred eCCCChHHhHHH---HHHHHHHHhhcCceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHHHhcCCeECCeEEE
Confidence 689999998754 7799999999999999999997543 36688999999999999999999999999999999
Q ss_pred EEeecCCCchh
Q 024094 91 VDFSPVTDFRE 101 (272)
Q Consensus 91 ve~s~~~~~r~ 101 (272)
++|.....|..
T Consensus 597 a~~yd~~~f~~ 607 (612)
T TIGR01645 597 AEAYDQILFDH 607 (612)
T ss_pred EEEcCHHHhhc
Confidence 99998877753
No 11
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=7.6e-13 Score=128.93 Aligned_cols=86 Identities=27% Similarity=0.565 Sum_probs=78.2
Q ss_pred CCCCChHHHh--HHHHHHHHHHHHHHhccCCeEEEEEeeC-CCC---CceeEEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 024094 16 GNPLDPRKIQ--EHFEDFYEDLFEELNKYGEIESLNICDN-LAD---HMVGNVYVQFREEEQAARALKSLSGRFYAGRPI 89 (272)
Q Consensus 16 ~~~~~~~~~~--~~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~---~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I 89 (272)
.+||++++|. ++|++|.|||+.+|++||.|.+|.|+.+ ... -..|.|||||++.++|+.|+.+|+|+.|++|+|
T Consensus 405 ~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtV 484 (500)
T KOG0120|consen 405 TNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTV 484 (500)
T ss_pred hhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEE
Confidence 6999999995 7999999999999999999999999866 433 357999999999999999999999999999999
Q ss_pred EEEeecCCCchh
Q 024094 90 IVDFSPVTDFRE 101 (272)
Q Consensus 90 ~ve~s~~~~~r~ 101 (272)
.+.|..+.+|..
T Consensus 485 vtsYydeDkY~~ 496 (500)
T KOG0120|consen 485 VASYYDEDKYHA 496 (500)
T ss_pred EEEecCHHHhhc
Confidence 999999887754
No 12
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.40 E-value=5e-13 Score=129.47 Aligned_cols=82 Identities=33% Similarity=0.583 Sum_probs=73.5
Q ss_pred CCCCChHHHh-HHHH-HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 16 GNPLDPRKIQ-EHFE-DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 16 ~~~~~~~~~~-~~yd-~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
-+||+|.+.. ..|+ +|.+||.++|++||+|..|.|..+.. |+|||.|.+.++|..|+++|||+||+|+.|++.|
T Consensus 449 ~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~----g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~ 524 (549)
T KOG0147|consen 449 SNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA----GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKY 524 (549)
T ss_pred hhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC----ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEE
Confidence 5899988664 5665 99999999999999999999987643 9999999999999999999999999999999999
Q ss_pred ecCCCchh
Q 024094 94 SPVTDFRE 101 (272)
Q Consensus 94 s~~~~~r~ 101 (272)
.++..|..
T Consensus 525 ~~~~~Y~~ 532 (549)
T KOG0147|consen 525 LPLERYHS 532 (549)
T ss_pred eehhhhhh
Confidence 99887754
No 13
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.6e-13 Score=127.24 Aligned_cols=93 Identities=22% Similarity=0.408 Sum_probs=72.4
Q ss_pred HHHHHHHhccCCeEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC---chhhhhhc--
Q 024094 33 EDLFEELNKYGEIESLNICD-NLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD---FREATCRQ-- 106 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~-~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~---~r~~~c~~-- 106 (272)
|||+.+|+.||+|.+|.|+. ..++.+..||||+|++.++|++|+.+|++..|+.+.|+|+|++... |+......
T Consensus 254 eDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVsk~k~r~k~~~~~~ 333 (479)
T KOG0415|consen 254 EDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVSKVKYRQKGSQKET 333 (479)
T ss_pred cchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhhhhhcccccccccc
Confidence 49999999999999999984 4788999999999999999999999999999999999999987632 43322111
Q ss_pred -cccccCCCCCccccceecc
Q 024094 107 -YEENTCNRGGYCNFMHLKR 125 (272)
Q Consensus 107 -~~~g~~~~g~~cn~~h~~~ 125 (272)
+....|..+...+|.|-..
T Consensus 334 d~~~~d~~~~~~~k~~~kd~ 353 (479)
T KOG0415|consen 334 DHRAKDCVGGPSSKFIHKDQ 353 (479)
T ss_pred chhhhccccCCcccchhccC
Confidence 2223455555556666543
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.36 E-value=1.6e-12 Score=121.40 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
-.++..+++|.++|++||.|+.|.|+.+ .++.++|||||+|.+.++|..||.+|||..|+|++|.|+|...+.
T Consensus 277 L~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 277 LSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 3567888999999999999999999855 478899999999999999999999999999999999999987543
No 15
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.30 E-value=9.2e-12 Score=88.92 Aligned_cols=62 Identities=32% Similarity=0.539 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPII 90 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ 90 (272)
+.++++|.++|++||.|..|.|..+..+...|+|||+|++.++|+.|+..|+|..|.|++|+
T Consensus 9 ~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 9 DVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp TSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 34568999999999999999998767788899999999999999999999999999999985
No 16
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.24 E-value=1.7e-11 Score=114.40 Aligned_cols=68 Identities=24% Similarity=0.372 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+.+++||+++|++||+|.+|.|+.+ .++.++|||||+|.+.++|++||..|||..|.|++|.|+|+..
T Consensus 14 ~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 14 TMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 4567899999999999999999854 5688999999999999999999999999999999999999754
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.21 E-value=2e-11 Score=115.40 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
..+++++++|+++|++||+|++|.|+.+ .++.++|||||+|.++++|++||+.|+|..|.+++|+|.|+..
T Consensus 115 Lp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 115 LPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 3678899999999999999999999754 6788999999999999999999999999999999999998743
No 18
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=3.2e-11 Score=107.17 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICD-NLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~-~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.-++.+.||+++|.+||.|..|.|+. ..+|.++|||||.|++.++|++||..|||.-|+.-.|.|||+...
T Consensus 198 sed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 198 SEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred ccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 34677889999999999999999984 467999999999999999999999999999999999999998653
No 19
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=3e-11 Score=98.10 Aligned_cols=68 Identities=26% Similarity=0.494 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
.|-+++|.|.++|+++|+|..|.|- +..+..++|||||+|...++|+.|++.++|..++.++|.|+|-
T Consensus 45 SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 45 SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 5667899999999999999999994 5566789999999999999999999999999999999999994
No 20
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.17 E-value=9.1e-11 Score=108.64 Aligned_cols=78 Identities=29% Similarity=0.570 Sum_probs=71.1
Q ss_pred CCCCChHHHhH---HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 024094 16 GNPLDPRKIQE---HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 92 (272)
Q Consensus 16 ~~~~~~~~~~~---~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve 92 (272)
-+||+|.++.. ...++++||.++|++||.|.+|.|.+ .|+.|.|-|.|.+.++|..||+.|+|++|+||.|+++
T Consensus 271 kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~ 347 (382)
T KOG1548|consen 271 KNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTAS 347 (382)
T ss_pred eecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEE
Confidence 58999999874 46789999999999999999999997 3567999999999999999999999999999999999
Q ss_pred eecC
Q 024094 93 FSPV 96 (272)
Q Consensus 93 ~s~~ 96 (272)
+...
T Consensus 348 i~DG 351 (382)
T KOG1548|consen 348 IWDG 351 (382)
T ss_pred EeCC
Confidence 9754
No 21
>smart00360 RRM RNA recognition motif.
Probab=99.16 E-value=1.5e-10 Score=80.95 Aligned_cols=64 Identities=34% Similarity=0.580 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 92 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve 92 (272)
....+||..+|++||.|..|.|+... ++.+.|+|||+|.+.++|..|+..|++..|.|+.|.|+
T Consensus 7 ~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 7 DVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred ccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 34567999999999999999998654 47788999999999999999999999999999999874
No 22
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.14 E-value=2e-10 Score=82.92 Aligned_cols=62 Identities=31% Similarity=0.485 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPII 90 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ 90 (272)
....+||.++|+.||.|..|.+..+..+.++|+|||+|.++++|..|+..++|.+|+|+.|.
T Consensus 9 ~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 9 STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 35668999999999999999999876678899999999999999999999999999999884
No 23
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=4.3e-11 Score=98.08 Aligned_cols=71 Identities=27% Similarity=0.452 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.|-+++++||.+.|..||+|+.|+|- +..++-.+|||.|+|++.++|++|+.+|||..+.|..|.|+|+-+
T Consensus 80 vHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 80 VHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred cCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 47788999999999999999999995 667888999999999999999999999999999999999999643
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=6.1e-11 Score=106.85 Aligned_cols=69 Identities=22% Similarity=0.373 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 30 DFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
...|+|++.|.+||+|.++.|+ +..+.+++||+||.|.+.++|+.||..|||.||.+|.|..-|++.+.
T Consensus 74 I~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 74 IDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred cchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 3458999999999999999998 55789999999999999999999999999999999999999998765
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.11 E-value=1.9e-10 Score=108.78 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G--R~I~ve~s~~~ 97 (272)
.+..+++||+++|++||+|+.|.|+.+ .+++++|||||+|++.++|++||+.||+..|.| ++|+|.++...
T Consensus 202 p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 202 PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 455778999999999999999999754 578899999999999999999999999999976 78999997653
No 26
>smart00362 RRM_2 RNA recognition motif.
Probab=99.09 E-value=5.6e-10 Score=78.32 Aligned_cols=61 Identities=38% Similarity=0.604 Sum_probs=55.0
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 92 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve 92 (272)
..++|.++|.+||+|..|.+.... +.+.|+|||+|.+.++|+.|+..|+|..|.|++|.|.
T Consensus 12 ~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 12 TEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 457889999999999999998655 6778999999999999999999999999999999873
No 27
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.5e-10 Score=105.19 Aligned_cols=68 Identities=26% Similarity=0.298 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
|.=-.-||..+|.+||+|++|.|+-+.. -++||+||+|++.+||++|-.+|||..+.||+|.|..++.
T Consensus 106 FrFRdpDL~aMF~kfG~VldVEIIfNER-GSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 106 FRFRDPDLRAMFEKFGKVLDVEIIFNER-GSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred ccccCccHHHHHHhhCceeeEEEEeccC-CCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3333469999999999999999997753 3689999999999999999999999999999999999865
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.05 E-value=3.7e-10 Score=112.53 Aligned_cols=72 Identities=26% Similarity=0.344 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
+..+.++|.++|++||.|++|.|+.+.++.++|||||+|.+.++|.+|+..|||..|.|++|.|.++..+.-
T Consensus 295 ~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 295 DTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred CccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 456778999999999999999999877888999999999999999999999999999999999999876553
No 29
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.03 E-value=5.1e-10 Score=101.31 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+.++++||+++|+.||+|++|.|+.+.. ..|||||+|+++++|+.|+. |+|..|.|+.|.|.++..
T Consensus 14 ~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 14 LKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 4567889999999999999999986532 46999999999999999995 999999999999999753
No 30
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.02 E-value=2.6e-09 Score=75.29 Aligned_cols=64 Identities=38% Similarity=0.636 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
...++|..+|..||.|..+.|.......+.|+|||+|.+.++|..|+..|++..+.|+.|+|.+
T Consensus 11 ~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 11 VTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred cCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4467899999999999999998765556789999999999999999999999999999999875
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.01 E-value=6.7e-10 Score=107.56 Aligned_cols=72 Identities=28% Similarity=0.490 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.+..++++|.++|++||.|+.|.|+.. .++.++|||||+|.+.++|..|+..|+|..|.|++|.|.|+....
T Consensus 195 ~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~ 267 (457)
T TIGR01622 195 HFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDST 267 (457)
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCC
Confidence 345678899999999999999999854 456889999999999999999999999999999999999976433
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.01 E-value=6.5e-10 Score=110.77 Aligned_cols=67 Identities=24% Similarity=0.521 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
++++++|+++|++||+|++|.|+.+ .++++.|||||+|.+.++|++|+..|++..|.|++|.|.|+.
T Consensus 11 ~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 11 DVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 4567899999999999999999855 458899999999999999999999999999999999999974
No 33
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=4.9e-10 Score=108.96 Aligned_cols=72 Identities=28% Similarity=0.484 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.|..-..||+.+|+.||.|..|.|+....+.++|||||+|....+|..|++.|||..|+||+|-|+|+-.++
T Consensus 126 Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 126 PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 455666799999999999999999988889999999999999999999999999999999999999986654
No 34
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.99 E-value=5.2e-10 Score=112.26 Aligned_cols=68 Identities=25% Similarity=0.396 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICD-NLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~-~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
.|+..+++|.++|++||+|.+|.|+. ..+++++|||||+|.+.++|..|+..|||..|.|+.|.|.+.
T Consensus 116 p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 116 SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45667899999999999999999974 467889999999999999999999999999999999999864
No 35
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=4.1e-11 Score=102.55 Aligned_cols=68 Identities=25% Similarity=0.408 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
.|+.++-||..+|++||+|++|.|+ +..||+++||||+.|+++.+..-|+..|||..+.||.|.|+..
T Consensus 44 ~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 44 PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 5778889999999999999999998 5578999999999999999999999999999999999999985
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.97 E-value=1.4e-09 Score=106.69 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
..+..++++|.++|++||.|+.|.|+.. .++.++|||||+|.+.++|..||..|+|..|.|+.|.|.++..
T Consensus 303 lp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 303 LPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 3567788999999999999999998754 5688899999999999999999999999999999999999754
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.92 E-value=2.4e-09 Score=92.77 Aligned_cols=69 Identities=28% Similarity=0.503 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
.++.++++|.++|.+||.|..|.|+.. .++.++|+|||+|.+.++|..|+..|+|..|.|++|.|.++.
T Consensus 124 ~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 124 PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 477889999999999999999999855 578999999999999999999999999999999999999975
No 38
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.89 E-value=3.1e-09 Score=95.11 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
.+.++++||+++|+.||+|.+|.|+.. +...|+|||+|+++++|+.|+. |+|..|.+.+|.|.-..
T Consensus 14 S~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 14 SPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 345678899999999999999999865 2345899999999999999995 99999999999998754
No 39
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=1.6e-09 Score=93.10 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=57.1
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
-+.||+++|.|||.|..|.|..... +.+||||+|++..+|++||..-+|..|+|-.|.|||...-
T Consensus 19 RekeieDlFyKyg~i~~ieLK~r~g--~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 19 REKEIEDLFYKYGRIREIELKNRPG--PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred hhccHHHHHhhhcceEEEEeccCCC--CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 3468999999999999999975432 3579999999999999999999999999999999997553
No 40
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.4e-09 Score=101.80 Aligned_cols=73 Identities=23% Similarity=0.405 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee---CCeeEEEEeecCCCchh
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY---AGRPIIVDFSPVTDFRE 101 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~---~GR~I~ve~s~~~~~r~ 101 (272)
..++.||.++|++||.|++|.|.....+.++|+|||+|.+.+.|..||++|||..- ..-+|.|.|+..++-+.
T Consensus 135 ~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 135 QCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred cccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCch
Confidence 36789999999999999999999988899999999999999999999999999864 46799999997755433
No 41
>PLN03213 repressor of silencing 3; Provisional
Probab=98.89 E-value=2.5e-09 Score=103.21 Aligned_cols=68 Identities=10% Similarity=0.221 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCH--HHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREE--EQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~--~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
-.|+++.+||...|+.||.|..|.|+. .++ +|||||+|... .++.+||..|||..+.|+.|+|..+..
T Consensus 18 LSydVTEDDLravFSeFGsVkdVEIpR-ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 18 LGESVGRDDLLKIFSPMGTVDAVEFVR-TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEec-ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 356788899999999999999999993 344 89999999987 689999999999999999999998754
No 42
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=3.7e-09 Score=83.19 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
-.|..+.|++.++|.+||.|..|.|- ...+ +|-|||.|++..+|.+|+..|+|..++++.|.|-|.+..+
T Consensus 26 Lp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 26 LPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred CCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 46788889999999999999999994 4333 6999999999999999999999999999999999976533
No 43
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.86 E-value=4.4e-09 Score=105.28 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcc--CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKY--GEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kf--G~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.+.+.+++|+++|++| |+|+.|.++. +||||+|++.++|++|++.|||.+|+|+.|.|+|+...
T Consensus 242 ~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 242 MTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred CCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 5567889999999999 9999998774 69999999999999999999999999999999999654
No 44
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.86 E-value=3.1e-09 Score=106.38 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEee
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDFS 94 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~-GR~I~ve~s 94 (272)
..++.++++|.++|++||+|.+|.|+.+.++.++|||||+|.+.++|++||+.|||..|. |+.|.|.++
T Consensus 66 Lp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 66 IPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 355678899999999999999999987788899999999999999999999999999985 788777655
No 45
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.85 E-value=3.8e-09 Score=102.33 Aligned_cols=73 Identities=25% Similarity=0.431 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.-|+.++++|..+|+..|.|.++.++ +..+|.++||+||+|.++++|+.|+..|||.+|.|++|.|.|.....
T Consensus 26 ip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 26 IPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRK 99 (435)
T ss_pred CCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccc
Confidence 57889999999999999999999997 55789999999999999999999999999999999999999986544
No 46
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=5.7e-09 Score=99.56 Aligned_cols=68 Identities=26% Similarity=0.357 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCee-CCeeEEEEeec
Q 024094 28 FEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFY-AGRPIIVDFSP 95 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~-~GR~I~ve~s~ 95 (272)
-|.|++||.-+|++.|+|-++.|+ ++.++.++|||||+|.+.++|+.||+.||+.+| -|+.|.|..|.
T Consensus 93 rD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 93 RDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred ccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 367889999999999999999887 557899999999999999999999999999999 59999999873
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.84 E-value=8.5e-09 Score=101.39 Aligned_cols=65 Identities=25% Similarity=0.317 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
..++++|+++|+.||.|..|.|+.+. +|+|||+|.+.++|..|+..|||..|.|++|.|.++...
T Consensus 287 ~vt~~~L~~lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 287 KVNCDRLFNLFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 36788999999999999999998653 489999999999999999999999999999999998553
No 48
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.5e-08 Score=91.57 Aligned_cols=63 Identities=16% Similarity=0.316 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++++|...|+.||+|.+|.|.+. +||+||.|++.|.|..||-.|||.++.|..|+|.|-...
T Consensus 176 lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 176 LTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred ccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 456788899999999999999875 489999999999999999999999999999999997553
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.78 E-value=1.3e-08 Score=100.04 Aligned_cols=64 Identities=20% Similarity=0.340 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh--CCCeeCCeeEEEEeecC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSL--SGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~l--nG~~~~GR~I~ve~s~~ 96 (272)
++.+++||.++|++||+|.+|.|+.. +|+|||+|++.++|++|++.| ++..+.|++|.|.|+..
T Consensus 12 ~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 12 QDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 34567899999999999999999853 489999999999999999974 78999999999999864
No 50
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6.2e-09 Score=91.68 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+..+.-|...|-.||.|++|.|+.+ .+.+-+||+||+|+..++|.+||..||+.++.||.|+|.|+...
T Consensus 21 eVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 21 EVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred HHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 4556678899999999999999844 55778999999999999999999999999999999999998653
No 51
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=1.6e-08 Score=91.13 Aligned_cols=68 Identities=21% Similarity=0.365 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICD-NLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~-~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
..++++|+-+|...|+|++|.++. ..++++.||+||.|..++||++||..|||-.+..+.|+|.|+..
T Consensus 52 ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARP 120 (360)
T KOG0145|consen 52 NMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARP 120 (360)
T ss_pred ccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccC
Confidence 367889999999999999999984 46899999999999999999999999999999999999999865
No 52
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=3e-08 Score=99.08 Aligned_cols=107 Identities=23% Similarity=0.321 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCC----CceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCchh
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLAD----HMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 101 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~----~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r~ 101 (272)
..|+++.++|...|.+.|.|++|.|...... .+.|||||+|.+.++|+.|+++|+|+.++|..|.|.++....-
T Consensus 523 lnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~-- 600 (725)
T KOG0110|consen 523 LNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA-- 600 (725)
T ss_pred CCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc--
Confidence 4788999999999999999999999754432 2459999999999999999999999999999999999982211
Q ss_pred hhhhccccccCCCCCccccceecccChHH----HHhhhcCc
Q 024094 102 ATCRQYEENTCNRGGYCNFMHLKRISRDL----RRQLFGRY 138 (272)
Q Consensus 102 ~~c~~~~~g~~~~g~~cn~~h~~~~~r~~----~~~~~~~~ 138 (272)
.+ ....|+.-..|+-+|++.++-.. .+.+|...
T Consensus 601 ~~----~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF 637 (725)
T KOG0110|consen 601 ST----VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF 637 (725)
T ss_pred cc----cccccccccccceeeeeccchHHHHHHHHHHHhcc
Confidence 11 11455555668888988776553 24555544
No 53
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=1.3e-08 Score=90.22 Aligned_cols=70 Identities=26% Similarity=0.371 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.-|++..|+|...|++||+|++..|+ +..++.++||+||+|.+.+.|..|++..+ -.|+||+..|.++..
T Consensus 20 L~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 20 LAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred cccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 46788899999999999999998776 66789999999999999999999998655 468999999988755
No 54
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.71 E-value=1.4e-08 Score=98.88 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.||..++++|..+|+.||.|+.|.+.... ++.++||+||+|.+.++|.+|+..|||.++.|+.|+|...+.
T Consensus 286 LHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 286 LHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred cccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 68999999999999999999999998654 899999999999999999999999999999999999888643
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.68 E-value=4.4e-08 Score=86.41 Aligned_cols=68 Identities=24% Similarity=0.529 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.-+++..-|..+|++||+|++|.+... .+++|-|||.|.+.+.|..|+.+|+|.-|-|+++.|+|+..
T Consensus 22 ~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 22 KKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred cHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 446788899999999999999988863 56899999999999999999999999999999999999865
No 56
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=5.2e-08 Score=93.01 Aligned_cols=69 Identities=28% Similarity=0.484 Sum_probs=61.4
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCchh
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 101 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r~ 101 (272)
.-++|++.|+.||+|++|.|..+..+ ++|| ||+|+++++|.+|+..|||..+.|+.|.|.......++.
T Consensus 89 ~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~ 157 (369)
T KOG0123|consen 89 DNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEERE 157 (369)
T ss_pred CcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhc
Confidence 34689999999999999999977666 8999 999999999999999999999999999998876655543
No 57
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=3.9e-08 Score=93.92 Aligned_cols=68 Identities=25% Similarity=0.461 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++++.+|+++|+.+|+|++|.||.+. + +.|||||.|.++.+|+.||..||...+.|++|.+-|+...
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 356788999999999999999999877 5 9999999999999999999999999999999999998653
No 58
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.65 E-value=4.6e-08 Score=89.30 Aligned_cols=83 Identities=24% Similarity=0.482 Sum_probs=67.9
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHhccCCeEEEEEeeC--CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDN--LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 16 ~~~~~~~~~~~~yd~~~eDL~~~F~kfG~I~~i~v~~~--~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
.+||.+.++.+ +|+.+++++|+|||+|..|.|... ...+-.--+||+|+..++|.+|+-.|||++|.|+.+.+.|
T Consensus 287 rnmVg~gevd~---elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 287 RNMVGAGEVDE---ELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred hhhcCcccccH---HHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 35665555554 566899999999999999988633 2234445799999999999999999999999999999999
Q ss_pred ecCCCchh
Q 024094 94 SPVTDFRE 101 (272)
Q Consensus 94 s~~~~~r~ 101 (272)
..+.+|..
T Consensus 364 yn~ekfs~ 371 (378)
T KOG1996|consen 364 YNLEKFSN 371 (378)
T ss_pred ccHHhhhh
Confidence 99888754
No 59
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=5.3e-08 Score=95.06 Aligned_cols=71 Identities=25% Similarity=0.445 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHh-----CC-CeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSL-----SG-RFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~l-----nG-~~~~GR~I~ve~s~~ 96 (272)
-.|+++++.|.+.|++||+|..+.|+ ++.++|+.|.|||.|.++.+|.+||.+. .| ..|+||.|.|..+-.
T Consensus 300 L~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 300 LPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred CCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 57999999999999999999999887 5678999999999999999999999987 34 788999999999743
No 60
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.61 E-value=5.8e-08 Score=83.30 Aligned_cols=66 Identities=30% Similarity=0.361 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 30 DFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
.+++-|+++|-+.|+|++|+|++. .+....|||||||.++++|+-||+.||...+-|++|.|..+.
T Consensus 21 vs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 21 VSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 456778999999999999999855 456678999999999999999999999999999999999876
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=3.4e-08 Score=92.52 Aligned_cols=67 Identities=27% Similarity=0.449 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
.|+.-++-|...|..||+|++|.|- ++.+++.+|||||||+=++.|+-|++.|||..+.||-|+|..
T Consensus 122 sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 122 SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 3444556788999999999999995 778899999999999999999999999999999999999985
No 62
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=1.4e-07 Score=90.29 Aligned_cols=65 Identities=28% Similarity=0.423 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
--.+++|-|+++|++||.|+.|..+. -||||-|.+.++|.+|++.|||++++|-.|-|.++...+
T Consensus 268 ~~~tTeE~lk~~F~~~G~veRVkk~r-------DYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 268 MESTTEETLKKLFNEFGKVERVKKPR-------DYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred chhhhHHHHHHHHHhccceEEeeccc-------ceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 44688999999999999999998875 399999999999999999999999999999999997644
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.56 E-value=6.7e-08 Score=88.19 Aligned_cols=59 Identities=24% Similarity=0.464 Sum_probs=55.1
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+-.+|.+.|++||+|.+|.|++ +|+||.|+-.++|..|++.|+|++|.|++++|++++.
T Consensus 91 tn~ElRa~fe~ygpviecdivk-------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 91 TNQELRAKFEKYGPVIECDIVK-------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred cCHHHhhhhcccCCceeeeeec-------ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 3367899999999999999997 6999999999999999999999999999999999875
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=1.5e-07 Score=88.21 Aligned_cols=82 Identities=26% Similarity=0.553 Sum_probs=68.8
Q ss_pred CCCCCChHHHhHHHHHHHHHHHHHHhccCCeEEEEEeeCCCC-----CceeEEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 024094 15 QGNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLAD-----HMVGNVYVQFREEEQAARALKSLSGRFYAGRPI 89 (272)
Q Consensus 15 ~~~~~~~~~~~~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~-----~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I 89 (272)
..|||+|++|++. ++.+|.++|.|||.|..|.|.....+ .-.-..||+|....++..|+.+|+|++|.|+++
T Consensus 451 LRNMV~P~DiDe~---LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~V 527 (544)
T KOG0124|consen 451 LRNMVDPKDIDED---LEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKV 527 (544)
T ss_pred EeccCChhhhhhH---HHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCcee
Confidence 3689999999875 56899999999999999998754332 123478999999999999999999999999999
Q ss_pred EEEeecCCCc
Q 024094 90 IVDFSPVTDF 99 (272)
Q Consensus 90 ~ve~s~~~~~ 99 (272)
.++......|
T Consensus 528 vAE~YDQ~~F 537 (544)
T KOG0124|consen 528 VAEVYDQERF 537 (544)
T ss_pred ehhhhhhhcc
Confidence 9998765554
No 65
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.50 E-value=1.9e-07 Score=88.98 Aligned_cols=68 Identities=21% Similarity=0.374 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCee---CCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFY---AGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~---~GR~I~ve~s~~ 96 (272)
.+.++||+++|++||.|.+|.|+++ .++.++|+|||+|.+.++|.+|+.+|+.... ...+|.|.|+..
T Consensus 45 t~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~ 116 (510)
T KOG0144|consen 45 TASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADG 116 (510)
T ss_pred cccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccch
Confidence 3678999999999999999999854 5788999999999999999999999988764 356788888754
No 66
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.50 E-value=2.9e-07 Score=80.37 Aligned_cols=71 Identities=15% Similarity=0.308 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcc-CCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKY-GEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kf-G~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.+-.++..|+..|.+| |.|..+.+..+ .||.++|||||+|++++.|.-|...||+..|.|+.|.|.|.+..
T Consensus 58 p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 58 PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 3445667788888888 78888888655 68999999999999999999999999999999999999998775
No 67
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.49 E-value=4e-07 Score=82.19 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=59.0
Q ss_pred HHHHHHHHhccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 32 YEDLFEELNKYGEIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 32 ~eDL~~~F~kfG~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+.-|+.+|..||.|..|.|+.+. +.+.+||+||...+-++|..||..|||..+.++.|.|.|-+.
T Consensus 292 e~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 292 ESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred HhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 35688999999999999999765 478899999999999999999999999999999999999654
No 68
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=4.9e-07 Score=81.89 Aligned_cols=70 Identities=20% Similarity=0.349 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee---CCeeEEEEeecCCCc
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY---AGRPIIVDFSPVTDF 99 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~---~GR~I~ve~s~~~~~ 99 (272)
..+|||..+|..||.|.+|.|.....+.++|+|||+|.+..+|..||.+|+|..- ..-.|.|.|+...+.
T Consensus 31 q~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 31 QSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 103 (371)
T ss_pred ccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHH
Confidence 4578999999999999999999988899999999999999999999999999864 356788999866543
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.36 E-value=3.7e-07 Score=91.39 Aligned_cols=74 Identities=16% Similarity=0.347 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCC-CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLA-DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~-~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
..|++...+|+.+|..||.|++|.|+.... +..+|||||+|-+..+|..|+.+|.++-|-||.|.++|+....-
T Consensus 621 ipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 621 IPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred cchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 589999999999999999999999997633 44589999999999999999999999999999999999977553
No 70
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.34 E-value=6.8e-07 Score=81.69 Aligned_cols=61 Identities=23% Similarity=0.345 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+...+|..+|++||+|++|.|++| |+||-.++...|+.||..|+|-.+.|..|.|+-+..+
T Consensus 14 ~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 14 ATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 344678999999999999999986 8899999999999999999999999999999998765
No 71
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=4.2e-07 Score=82.26 Aligned_cols=65 Identities=17% Similarity=0.273 Sum_probs=58.8
Q ss_pred HHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 33 EDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.+|..+|-.||.|++.+|. +..+..+++|+||.|.+..+|+.||.+|||..|.-++|+|.+-..+
T Consensus 300 aEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 300 AELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred HHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 5789999999999999885 6677889999999999999999999999999999999999985443
No 72
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.30 E-value=1.4e-06 Score=83.34 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHH-hccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 26 EHFEDFYEDLFEEL-NKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 26 ~~yd~~~eDL~~~F-~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
..|+.-+.||+++| ++-|+|+.|.|.-+..++++|+|.|||+++|.+++|++.||-..+.||+|.|.=.
T Consensus 52 Ipyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 52 IPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred CcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 57888899999999 4789999999998888999999999999999999999999999999999998754
No 73
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=5.2e-07 Score=79.92 Aligned_cols=63 Identities=21% Similarity=0.401 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.|.+.++||+.+|.+||+|.+|.|.. ||+||+|+++.+|.+|+..|||+.|.|-.|.|+++..
T Consensus 10 ~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 10 PYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 34566789999999999999999987 8999999999999999999999999999999999763
No 74
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.16 E-value=3.2e-06 Score=83.20 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=58.8
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCC-CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLA-DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~-~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
--.||+.+|+|||+|+-..|+.+.. .-.++|+||+..+.++|.+||..|+-+++-|+.|.|+-+..
T Consensus 418 RAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 418 RATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred hhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 3479999999999999999997753 34578999999999999999999999999999999998754
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.16 E-value=3.7e-06 Score=78.32 Aligned_cols=89 Identities=21% Similarity=0.469 Sum_probs=69.3
Q ss_pred HHHHhccCCeEEEEEeeCCC----CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCchhhhhhcccccc
Q 024094 36 FEELNKYGEIESLNICDNLA----DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENT 111 (272)
Q Consensus 36 ~~~F~kfG~I~~i~v~~~~~----~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r~~~c~~~~~g~ 111 (272)
.+.|.+||+|..|.|-+... ...--=|||+|...++|..||.+.+|..++||.|++.|.+. .-|-.|..+.
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTT-----KYCtsYLRn~ 212 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTT-----KYCTSYLRNA 212 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCch-----HHHHHHHcCC
Confidence 36799999999999864431 11112359999999999999999999999999999999753 2577888877
Q ss_pred CCCCCccccceecccChH
Q 024094 112 CNRGGYCNFMHLKRISRD 129 (272)
Q Consensus 112 ~~~g~~cn~~h~~~~~r~ 129 (272)
....+.|-|+|--....+
T Consensus 213 ~CpNp~CMyLHEpg~e~D 230 (480)
T COG5175 213 VCPNPDCMYLHEPGPEKD 230 (480)
T ss_pred CCCCCCeeeecCCCcccc
Confidence 667788999997544433
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.15 E-value=3.8e-06 Score=75.79 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
-+|..+.+||+++|..||.++.+.|-.+..+.+.|.|-|.|...++|..|++.++|..++|++|.+.......
T Consensus 91 L~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 91 LPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred CCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 5778899999999999999999999888889999999999999999999999999999999999999876544
No 77
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.13 E-value=3.9e-06 Score=72.21 Aligned_cols=65 Identities=20% Similarity=0.401 Sum_probs=56.4
Q ss_pred HHHHHHHhccCCeEEE-E-EeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 33 EDLFEELNKYGEIESL-N-ICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i-~-v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.-|.+.|+.||.|... . +.++.++.+.||+||.|...+.+.+|+..|||..+..++|+|+++-..
T Consensus 111 ~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 111 KLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred HHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 4577899999999773 3 346667889999999999999999999999999999999999997543
No 78
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.11 E-value=6.3e-06 Score=83.49 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
-.+.+.||..+|+.||+|.+|.|+-+ +|+|||+.....+|.+|+.+|....+.++.|+|.|+-...
T Consensus 431 k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 431 KNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred chhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 34677899999999999999999865 5899999999999999999999999999999999985533
No 79
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.04 E-value=3.4e-06 Score=75.77 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
-.|..+.+.|...|+.||.|..|.|+ +...++++||+||+|.+.+.++.||+ |+|..|.|+.|.|.+...
T Consensus 109 vd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 109 VDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred cccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 46777777899999999999988886 55567899999999999999999999 999999999999999643
No 80
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.95 E-value=1.8e-05 Score=73.88 Aligned_cols=63 Identities=24% Similarity=0.388 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~l-nG~~~~GR~I~ve~s~~ 96 (272)
..++.||.+-|.+||+|..|.|.... |+|||+|.+...|+.|...+ +-..++|.+|.|.|...
T Consensus 239 ~v~e~dIrdhFyqyGeirsi~~~~~~-----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 239 EVLEQDIRDHFYQYGEIRSIRILPRK-----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred chhHHHHHHHHhhcCCeeeEEeeccc-----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 68889999999999999999998643 79999999999998776655 65567999999999876
No 81
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.84 E-value=2.1e-05 Score=69.65 Aligned_cols=68 Identities=16% Similarity=-0.006 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.+|-|+++|-+-|+|..|.|++...+..+ ||||+|+++-...-|++.|||..+.+..|.|.+...+
T Consensus 20 ~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~ 87 (267)
T KOG4454|consen 20 GVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGN 87 (267)
T ss_pred hhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccCC
Confidence 3677788899999999999999988777777 9999999999999999999999999999999996544
No 82
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.84 E-value=4.2e-06 Score=79.18 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA 85 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~ 85 (272)
+++..+|.+.|..+|.|...++..... .-+|-|+|........|+. ++|+.|.
T Consensus 162 ~~~l~e~~e~f~r~Gev~ya~~ask~~---s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 162 AAILPESGESFERKGEVSYAHTASKSR---SSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhcchhhhhhhhhcchhhhhhhhccCC---CcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 467789999999999999888874322 2366799999999999998 7888887
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.74 E-value=1.1e-05 Score=79.12 Aligned_cols=61 Identities=33% Similarity=0.407 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
...+++|..+|+.||+|..|..-... .|-+||+|.+..+|+.|+++|++..|.|+.|+...
T Consensus 86 ~Vsn~~L~~~f~~yGeir~ir~t~~~----~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 86 SVSNDTLLRIFGAYGEIREIRETPNK----RGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCCHHHHHHHHHhhcchhhhhccccc----CceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 45678999999999999997665433 48999999999999999999999999999999433
No 84
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=7.9e-05 Score=73.50 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEe
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDF 93 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~-GR~I~ve~ 93 (272)
.+.++.-|..+|+++|+|..+.++-...+..+||+|++|++..+|+.|++.|||..|+ ..++.|..
T Consensus 74 l~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 74 LEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred HHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 4567788899999999999999985555558999999999999999999999999986 45555554
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.54 E-value=0.00018 Score=67.37 Aligned_cols=68 Identities=16% Similarity=0.249 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhccCCeEE--------EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIES--------LNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~--------i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+.+.+++.++|++||-|.. |.|..+..|+++|-|.|.|-..++..-|++.|++..|.|..|+|+-+.-
T Consensus 145 DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkf 220 (382)
T KOG1548|consen 145 DITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKF 220 (382)
T ss_pred cccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhh
Confidence 5677889999999999864 6666777799999999999999999999999999999999999998754
No 86
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.48 E-value=0.00013 Score=70.29 Aligned_cols=65 Identities=26% Similarity=0.368 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
-.|+-+++-|++.|..||.|+.+.|..+ ++.+| .|.|.++++|+.|+..|+|..++|+.|.|.|+
T Consensus 544 lP~dfTWqmlrDKfre~G~v~yadime~--GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 544 LPFDFTWQMLRDKFREIGHVLYADIMEN--GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred CCccccHHHHHHHHHhccceehhhhhcc--CCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 4678889999999999999999988654 44455 79999999999999999999999999999874
No 87
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.48 E-value=9.6e-05 Score=71.64 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
.++++...|+++|.+||+|+...|. ....+++.+|+||+|++.++++.||++ +-..+++++|.|+-
T Consensus 297 P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 297 PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 4567788899999999999988775 333444449999999999999999996 47888999999987
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.45 E-value=0.00034 Score=66.86 Aligned_cols=69 Identities=25% Similarity=0.343 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
.+-.+.+-|+.+|+-||.|..|.|..++. -.|.|+|.+...|+-|+..|+|..+-|++|+|.++.-+..
T Consensus 307 ~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 307 EEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred hhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 45577788999999999999999997653 4899999999999999999999999999999999976554
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.44 E-value=0.00047 Score=61.38 Aligned_cols=67 Identities=12% Similarity=0.266 Sum_probs=52.1
Q ss_pred HHHHHHHHhccCCeEEEEEeeC-CCCC-ceeEEEEEecCHHHHHHHHHHhCCCeeC---CeeEEEEeecCCC
Q 024094 32 YEDLFEELNKYGEIESLNICDN-LADH-MVGNVYVQFREEEQAARALKSLSGRFYA---GRPIIVDFSPVTD 98 (272)
Q Consensus 32 ~eDL~~~F~kfG~I~~i~v~~~-~~~~-~~G~afVeF~~~~dA~~A~~~lnG~~~~---GR~I~ve~s~~~~ 98 (272)
--+|+.+|-.|---+.+.|... ..+. .+-+|||+|.+..+|.+|+++|||..|+ +..|+++++....
T Consensus 48 pREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNt 119 (284)
T KOG1457|consen 48 PREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNT 119 (284)
T ss_pred HHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCc
Confidence 3578888888866666666532 2222 2469999999999999999999999996 8999999987644
No 90
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.42 E-value=7.3e-05 Score=69.93 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
..|++++|.|.+.|.+||+|.+|.|+ +..++.++||+||+|++.+....++. ..-..|+|+.|-+.-+
T Consensus 14 isw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 14 LSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred cCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 46888999999999999999999997 45668899999999999887777765 4556788888877654
No 91
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.35 E-value=0.00074 Score=56.48 Aligned_cols=63 Identities=24% Similarity=0.555 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCch
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 100 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r 100 (272)
+.+..+|.+.|..||+|.-|.++. +..+|+|.+-..|.+|+. |+|..+.|+.|+|..-+ .+|-
T Consensus 47 d~l~~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKt-pdW~ 109 (146)
T PF08952_consen 47 DNLMDELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKT-PDWL 109 (146)
T ss_dssp HHHHHHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-------
T ss_pred HHHHHHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCC-ccHH
Confidence 478889999999999998888776 457999999999999998 99999999999999854 3453
No 92
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.27 E-value=0.00015 Score=64.31 Aligned_cols=55 Identities=33% Similarity=0.508 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIV 91 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~v 91 (272)
..+.||.+.|.+||++....+ +.+++||+|+++++|..||..|+|..+.++.|++
T Consensus 111 ~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 111 VSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 345799999999999954433 2479999999999999999999999999999999
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.18 E-value=0.00074 Score=53.50 Aligned_cols=61 Identities=23% Similarity=0.410 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC-----eeCCeeEEEEeec
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGR-----FYAGRPIIVDFSP 95 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~-----~~~GR~I~ve~s~ 95 (272)
...+||++.|++||.|.-|.+.... -.|||-|.+.++|+.|+.++.-. .+.+..++++...
T Consensus 13 ~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLe 78 (105)
T PF08777_consen 13 TSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLE 78 (105)
T ss_dssp --HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---
T ss_pred cCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECC
Confidence 3468999999999999988887644 38999999999999999987544 6677777777653
No 94
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.17 E-value=0.00096 Score=46.36 Aligned_cols=40 Identities=23% Similarity=0.557 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q 024094 32 YEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARAL 76 (272)
Q Consensus 32 ~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~ 76 (272)
.++|...|..||+|..+.+.... -.+||+|.+..+|+.|+
T Consensus 14 ~~~vl~~F~~fGeI~~~~~~~~~-----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 14 AEEVLEHFASFGEIVDIYVPEST-----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHhcCCEEEEEcCCCC-----cEEEEEECCHHHHHhhC
Confidence 35677799999999999998432 38999999999999985
No 95
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=97.16 E-value=0.00026 Score=66.26 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCchh
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 101 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r~ 101 (272)
.++.++++|++.|.+||.|..+.|+ +..+..++||+||+|.+++.+.+++. +.-+.|+|+.+.|.-+.......
T Consensus 106 ~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 106 PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcc
Confidence 4567889999999999999988876 55667889999999999888888876 78899999999999887655433
No 96
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.10 E-value=0.0019 Score=50.84 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhccCCeEEEEEe-eC-------CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEE-EEee
Q 024094 30 DFYEDLFEELNKYGEIESLNIC-DN-------LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPII-VDFS 94 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~-~~-------~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~-ve~s 94 (272)
.....|...|++||.|++..-+ .. ........+.|+|.+..+|.+||. -||..|.|-.|. |.+.
T Consensus 17 ~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 17 SASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp GGHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-
T ss_pred HHHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEc
Confidence 3456889999999999887511 10 001123589999999999999998 799999986654 6554
No 97
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.09 E-value=0.00044 Score=62.50 Aligned_cols=64 Identities=22% Similarity=0.419 Sum_probs=53.4
Q ss_pred HHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 31 FYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
..+-|-..|.+|=.-....|+ +..+++++||+||.|.+..++..|+..|+|.+++.++|.+--+
T Consensus 203 nd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 203 NDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 334555778888777667776 4467999999999999999999999999999999999987664
No 98
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=96.80 E-value=0.0017 Score=65.82 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCC----CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLA----DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~----~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
..+++.|...|..||+|..|.|..+.+ ....-++||-|-+..+|+.|++.|+|..|.+..|++-|+..
T Consensus 185 sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 185 SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKA 256 (877)
T ss_pred cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccc
Confidence 456789999999999999999975543 23456899999999999999999999999999999999843
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.80 E-value=0.00093 Score=65.97 Aligned_cols=68 Identities=13% Similarity=0.292 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
-.++..|.++...||+++...++.+ .++-++||||.+|.+..-+..|+..|||..+.++.|+|+.+-+
T Consensus 300 ~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 300 YLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred ccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 3566788899999999999988744 5578899999999999999999999999999999999999755
No 100
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.76 E-value=0.0053 Score=46.89 Aligned_cols=60 Identities=28% Similarity=0.393 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
..+..-|..++..+| +|..|. .+.|.|.|.+++.|..|.+-|+|..+-|..|.|.|.+..
T Consensus 17 ~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 17 SSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp HHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred HHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 456667899999986 777662 168999999999999999999999999999999998653
No 101
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.68 E-value=0.0015 Score=62.12 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhccCCe-EE--EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCchh
Q 024094 26 EHFEDFYEDLFEELNKYGEI-ES--LNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 101 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I-~~--i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r~ 101 (272)
--|+++.|||..+|..|..- .- |+|+-|..|++.|-|||+|.+.++|..|....+.+..+.|.|.|--+.+.....
T Consensus 288 LPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eeln~ 366 (508)
T KOG1365|consen 288 LPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEELNE 366 (508)
T ss_pred CChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHHHH
Confidence 58999999999999999753 33 789999899999999999999999999999999998888888776665544443
No 102
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.66 E-value=0.0026 Score=62.10 Aligned_cols=66 Identities=24% Similarity=0.284 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
.-|.++++||.++|+-+ .|+++.+.. .++++.|-|||||++++++++|++ ++-..+..|-|-|--+
T Consensus 18 LPwsat~~ei~~Ff~~~-~I~~~~~~r-~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 18 LPWSATEKEILDFFSNC-GIENLEIPR-RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CCccccHHHHHHHHhcC-ceeEEEEec-cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 57899999999999998 577765553 346778999999999999999998 5777777787777654
No 103
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.63 E-value=0.015 Score=45.60 Aligned_cols=73 Identities=14% Similarity=0.310 Sum_probs=53.1
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC----CeeEEE
Q 024094 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYA----GRPIIV 91 (272)
Q Consensus 17 ~~~~~~~~~~~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~----GR~I~v 91 (272)
+-++.+.|.+..++ .| .|...=+.|+ +-.+....|||||.|.+.+.|..-++.++|.... .+...|
T Consensus 11 n~~t~~~L~~~l~~-------~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 11 NKYTQEMLIQILDE-------HF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred CCCCHHHHHHHHHH-------hc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 44566665544332 22 4777777886 4456678999999999999999999999999874 556677
Q ss_pred EeecCCC
Q 024094 92 DFSPVTD 98 (272)
Q Consensus 92 e~s~~~~ 98 (272)
.|+..+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 7776543
No 104
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.59 E-value=0.0047 Score=58.71 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee-C-CeeEEEEeecCCC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY-A-GRPIIVDFSPVTD 98 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~-~-GR~I~ve~s~~~~ 98 (272)
-.|-.+.+-|..+|...|+|+.|.|..... --|.|||++.+.|++|..+|||..| . =-+|+|+|+..+.
T Consensus 130 p~YpItvDVly~Icnp~GkVlRIvIfkkng----VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 130 PQYPITVDVLYTICNPQGKVLRIVIFKKNG----VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred CccccchhhhhhhcCCCCceEEEEEEeccc----eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 356666778889999999999999986532 4799999999999999999999976 3 4578999987654
No 105
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=96.44 E-value=0.013 Score=42.59 Aligned_cols=54 Identities=24% Similarity=0.423 Sum_probs=43.3
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 92 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve 92 (272)
+.+||+..+.+|+-. .|....+ || ||.|.+..+|+.|+.+.+|+.+-+-.|.++
T Consensus 13 ~v~d~K~~Lr~y~~~---~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~ 66 (66)
T PF11767_consen 13 TVEDFKKRLRKYRWD---RIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQME 66 (66)
T ss_pred cHHHHHHHHhcCCcc---eEEecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence 457899999999765 2333333 78 999999999999999999999988777653
No 106
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.37 E-value=0.0026 Score=59.92 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhccCCeEE--------EEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 30 DFYEDLFEELNKYGEIES--------LNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~--------i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
++..+|++.|.++|.|+. |+|- +..|+.++|-|.|.|++...|+.||..++++.|.|-+|+|.++..
T Consensus 78 ~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 78 VCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAER 153 (351)
T ss_pred chHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhh
Confidence 577899999999998853 4553 336788999999999999999999999999999999999888744
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.30 E-value=0.012 Score=56.13 Aligned_cols=63 Identities=21% Similarity=0.268 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.-.+-|+.+|..||.|+.|..++.+. |-|.||.-+..+.+.|+..||+..+-|.+|.|.++..
T Consensus 300 ~N~drlFNl~ClYGNV~rvkFmkTk~----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 300 MNCDRLFNLFCLYGNVERVKFMKTKP----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred cchhhhhhhhhhcCceeeEEEeeccc----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 44568999999999999999987765 8999999999999999999999999999999999854
No 108
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.28 E-value=0.0018 Score=60.55 Aligned_cols=83 Identities=23% Similarity=0.439 Sum_probs=59.2
Q ss_pred HHHhccCCeEEEEEeeCCC---CC-ceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCchhhhhhccccccC
Q 024094 37 EELNKYGEIESLNICDNLA---DH-MVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREATCRQYEENTC 112 (272)
Q Consensus 37 ~~F~kfG~I~~i~v~~~~~---~~-~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r~~~c~~~~~g~~ 112 (272)
+.|.+||.|..|.+..... .+ ...-+||+|+..++|..||..++|..++|+.|.+.|...+ -|..++...-
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk-----ycs~~l~~~~ 173 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK-----YCSFYLRNDI 173 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc-----chhHHhhhhc
Confidence 5588999999999875431 11 1123899999999999999999999999999998886532 2333433332
Q ss_pred CCCCccccceec
Q 024094 113 NRGGYCNFMHLK 124 (272)
Q Consensus 113 ~~g~~cn~~h~~ 124 (272)
.....|-|+|..
T Consensus 174 c~~~~cmylhe~ 185 (327)
T KOG2068|consen 174 CQNPDCMYLHEI 185 (327)
T ss_pred ccCccccccccc
Confidence 233458888853
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.26 E-value=0.0073 Score=61.32 Aligned_cols=67 Identities=28% Similarity=0.355 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhccCCeE-EEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 27 HFEDFYEDLFEELNKYGEIE-SLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~-~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
-|++..+||.++|.-|-.+- +|.|..+..+.+.|-|-|-|++.++|..|+..|+++.|..++|.+.+
T Consensus 876 Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 876 PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 57889999999999998775 56666777889999999999999999999999999999999998865
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.23 E-value=0.0048 Score=59.19 Aligned_cols=69 Identities=22% Similarity=0.279 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeE-EEEEecCHHHHHHHHHHhCCCee-C-CeeEEEEeecCCC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGN-VYVQFREEEQAARALKSLSGRFY-A-GRPIIVDFSPVTD 98 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~-afVeF~~~~dA~~A~~~lnG~~~-~-GR~I~ve~s~~~~ 98 (272)
..|-.+.+-|..+|++||.|..|.-..... || |.|+|.+...|+.|..+|+|+.| + --.|.++|+..+.
T Consensus 158 m~ypVslDVLHqvFS~fG~VlKIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~ 229 (492)
T KOG1190|consen 158 MFYPVSLDVLHQVFSKFGFVLKIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTD 229 (492)
T ss_pred ceeeeEHHHHHHHHhhcceeEEEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhccc
Confidence 456778889999999999999987764432 44 89999999999999999999986 3 3567888886644
No 111
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.09 E-value=0.017 Score=50.35 Aligned_cols=65 Identities=25% Similarity=0.325 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC--CCeeCCeeEEEEeecCCCc
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln--G~~~~GR~I~ve~s~~~~~ 99 (272)
+..+.|+.+|..|+.+..+.+.... +-+.|.|.+.++|..|...|+ +..|.|..|.|.|+.....
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF-----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF-----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT-----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC-----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 4557889999999999998887654 589999999999999999999 9999999999999866554
No 112
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.04 E-value=0.0045 Score=60.49 Aligned_cols=76 Identities=22% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHhccCCeEE-EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCchhh
Q 024094 26 EHFEDFYEDLFEELNKYGEIES-LNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFREA 102 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~-i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r~~ 102 (272)
.-|..+++||.++|+-.=.|.. |.++....+.+.|-|||+|++++.|++|+. -|-..|.-|-|.|--+....++.+
T Consensus 111 LPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss~~e~~~~ 187 (510)
T KOG4211|consen 111 LPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSSRAEVKRA 187 (510)
T ss_pred CCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhHHHHHHhh
Confidence 4678899999999997754444 556655666788999999999999999998 477788888888887766555443
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.03 E-value=0.0022 Score=59.47 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICD-NLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~-~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
-+|.+..+||+..|..+|.|..|.++. ..++.+.||+||.|.....+..|+.. +...+.+++|.+++....
T Consensus 193 ~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 193 LDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 467788889999999999999999984 45688899999999999999999987 899999999999997544
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.94 E-value=0.0055 Score=59.05 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCC---C---CCc--------eeEEEEEecCHHHHHHHHHHhCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNL---A---DHM--------VGNVYVQFREEEQAARALKSLSG 81 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~---~---~~~--------~G~afVeF~~~~dA~~A~~~lnG 81 (272)
+..++.|.++|+.+|.|+.|.||++. . +.+ +-+|+|||++.+.|.+|.+.|+.
T Consensus 242 Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 242 DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45669999999999999999999872 1 111 34799999999999999998754
No 115
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.62 E-value=0.036 Score=46.39 Aligned_cols=55 Identities=18% Similarity=0.440 Sum_probs=46.9
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
..|...++.||+|.+|.++-. .-|.|.|.+..+|-+|+.+++. ..-|..+.|.|-
T Consensus 105 ~sV~~~Ls~fGpI~SVT~cGr------qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLCGR------QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHHHHHhcCCcceeeecCC------ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 567788999999999999953 4799999999999999999987 556778888774
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.54 E-value=0.034 Score=49.48 Aligned_cols=62 Identities=18% Similarity=0.291 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEeec
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDFSP 95 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~-GR~I~ve~s~ 95 (272)
...+-|..+|.+|.-.+.|.++.... +.|||+|.+...|..|..+|+|..+- ...+.|.|+.
T Consensus 158 s~~e~l~~lf~qf~g~keir~i~~~~----~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 158 SESEMLSDLFEQFPGFKEIRLIPPRS----GIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhHHHHHHHHhhCcccceeEeccCCC----ceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 34456667788888888888886543 89999999999999999999999986 7778887753
No 117
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.07 E-value=0.043 Score=50.99 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=45.5
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
.=|..+|++||.|++.....+. -+.+|.|...-+|.+||. -||+.|+|-.+ |-..+
T Consensus 211 s~vL~~F~~cG~Vvkhv~~~ng-----NwMhirYssr~~A~KALs-kng~ii~g~vm-iGVkp 266 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTPSNG-----NWMHIRYSSRTHAQKALS-KNGTIIDGDVM-IGVKP 266 (350)
T ss_pred hHHHHHHHhhCeeeeeecCCCC-----ceEEEEecchhHHHHhhh-hcCeeeccceE-Eeeee
Confidence 5688999999999988777443 389999999999999998 69999998655 33433
No 118
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.59 E-value=0.02 Score=55.94 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
-+.++|..-|.+||+|..|.|-... --|.|+|.+..+|-.|+. ..+..|+++.|+|-|-..
T Consensus 385 nt~a~ln~hfA~fG~i~n~qv~~~~-----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 385 NTIADLNPHFAQFGEIENIQVDYSS-----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chHhhhhhhhhhcCccccccccCch-----hhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 3557999999999999999998762 368999999999988876 799999999999999755
No 119
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=94.37 E-value=0.12 Score=51.94 Aligned_cols=14 Identities=71% Similarity=0.911 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCCCC
Q 024094 144 RSRSRSRSPYRHRS 157 (272)
Q Consensus 144 r~rsRSrs~~r~R~ 157 (272)
++++|||||.+.++
T Consensus 606 rskSRSRSpS~~~S 619 (757)
T KOG4368|consen 606 RSKSRSRSPSRSNS 619 (757)
T ss_pred cccccCCCcccccC
Confidence 33444444443333
No 120
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.57 E-value=0.14 Score=39.04 Aligned_cols=41 Identities=22% Similarity=0.454 Sum_probs=34.9
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 80 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln 80 (272)
.||.++|+.||.|.--+|-+ .-|||...+.+.|..|+..+.
T Consensus 23 ~DI~qlFspfG~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 23 SDIYQLFSPFGQIYVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHCCCCCCEEEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred hhHHHHhccCCcEEEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 59999999999996555544 379999999999999999875
No 121
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=93.37 E-value=0.1 Score=46.84 Aligned_cols=53 Identities=25% Similarity=0.311 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY 84 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~ 84 (272)
+.++++|+.+|+.|--...+.|-... ...+|||+|++.+.|.+|+..|+|..+
T Consensus 221 ~~~ed~l~~~~~~~~gf~~l~~~~~~---g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 221 NCTEDELKQLLSRYPGFHILKIRARG---GMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred CCCHHHHHHHHHhCCCceEEEEecCC---CcceEeecHHHHHHHHHHHHHhhccee
Confidence 35678999999999655544443221 125899999999999999999999876
No 122
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.91 E-value=0.34 Score=35.59 Aligned_cols=54 Identities=26% Similarity=0.463 Sum_probs=33.0
Q ss_pred HHHHHHHhccC-----CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 33 EDLFEELNKYG-----EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 33 eDL~~~F~kfG-----~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
.+|..++..-+ .|-.|.|.++ |+||+-.. +.|..++.+|++..+.|++|.|+.+
T Consensus 16 ~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 16 RDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp HHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45666665543 5667888774 88999886 5889999999999999999999864
No 123
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=92.52 E-value=0.081 Score=53.01 Aligned_cols=9 Identities=78% Similarity=0.914 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 024094 144 RSRSRSRSP 152 (272)
Q Consensus 144 r~rsRSrs~ 152 (272)
++++|++|+
T Consensus 602 RdrsrskSR 610 (757)
T KOG4368|consen 602 RSRSRSKSR 610 (757)
T ss_pred ccccccccc
Confidence 333333333
No 124
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.34 E-value=0.15 Score=49.03 Aligned_cols=63 Identities=19% Similarity=0.346 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCC----CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLA----DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~----~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
++.+.|..+|.-.|+|..|.|.-+.. ....-.|||.|.+...+..|-. |..+.|-++.|.|--
T Consensus 19 at~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 19 ATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred hhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 46678999999999999998864332 3345689999999888887765 677777666666543
No 125
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.34 E-value=0.069 Score=53.59 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=52.2
Q ss_pred HHHHHHHHh-ccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee---CCeeEEEEeecCCCchhhhh
Q 024094 32 YEDLFEELN-KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY---AGRPIIVDFSPVTDFREATC 104 (272)
Q Consensus 32 ~eDL~~~F~-kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~---~GR~I~ve~s~~~~~r~~~c 104 (272)
.-.|++++. ..|.|+.+||-.- +--|||.|.+.++|.+.+.+|+|..+ +++-|.|+|...........
T Consensus 458 lgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~deld~hr~ 529 (718)
T KOG2416|consen 458 LGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRADELDKHRN 529 (718)
T ss_pred HHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchhHHHHHhc
Confidence 345777787 4567777755432 24799999999999999999999986 78999999988766654433
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=92.26 E-value=0.19 Score=48.20 Aligned_cols=65 Identities=23% Similarity=0.230 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhcc----CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEE
Q 024094 26 EHFEDFYEDLFEELNKY----GEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIV 91 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kf----G~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~v 91 (272)
--|+++..||.++|..- |-++.|..+....+...|-|||.|..+++|+.|+.. |-..+.-|-|.+
T Consensus 169 LPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 169 LPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred CCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHH
Confidence 57899999999999743 344567777777788899999999999999999974 433444444433
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=92.16 E-value=0.034 Score=57.66 Aligned_cols=71 Identities=23% Similarity=0.188 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.+|..+.+.|+.+|.++|.++++.++....++++|.|||.|.++.+|..|+..+++..+.-..+.|..+.+
T Consensus 744 ~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 744 PPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred CCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 47778889999999999999999999888899999999999999999999999999999888888888766
No 128
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.60 E-value=0.13 Score=53.45 Aligned_cols=66 Identities=26% Similarity=0.285 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee--CCeeEEEEeecCCCch
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY--AGRPIIVDFSPVTDFR 100 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~--~GR~I~ve~s~~~~~r 100 (272)
.+-.-|..+|++||.|.+++...+. --|.|+|...+.|..|+.+|+|+.+ -|-+.+|.|+....+-
T Consensus 310 ~tSssL~~l~s~yg~v~s~wtlr~~-----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~~ 377 (1007)
T KOG4574|consen 310 LTSSSLATLCSDYGSVASAWTLRDL-----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPMY 377 (1007)
T ss_pred chHHHHHHHHHhhcchhhheecccc-----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccccc
Confidence 4456788999999999999998654 3789999999999999999999986 6899999999876653
No 129
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.48 E-value=0.55 Score=33.75 Aligned_cols=41 Identities=32% Similarity=0.444 Sum_probs=30.9
Q ss_pred HHHHHHHhcc---CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh
Q 024094 33 EDLFEELNKY---GEIESLNICDNLADHMVGNVYVQFREEEQAARALKSL 79 (272)
Q Consensus 33 eDL~~~F~kf---G~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~l 79 (272)
+||+..|..| .....|.++++. -|-|.|.+.+.|..|+.+|
T Consensus 19 ~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 19 DDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred HHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 4666666666 234578888764 6889999999999999875
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.38 E-value=0.18 Score=52.87 Aligned_cols=58 Identities=22% Similarity=0.424 Sum_probs=49.5
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeec
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSP 95 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G--R~I~ve~s~ 95 (272)
.-|..+|..||.|..|.+-.. .-||||.|++...|+.|+..|-|.-|.| +.|.|.|+.
T Consensus 470 ~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 470 SRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred HHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 467789999999998877643 3599999999999999999999999974 568899874
No 131
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.04 E-value=0.053 Score=56.30 Aligned_cols=66 Identities=24% Similarity=0.340 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 92 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve 92 (272)
++-..++||...|..+|.|..+.|. ....+..+|.|||+|...++|.+||....+..|....|.|.
T Consensus 676 ~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 676 SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAIS 742 (881)
T ss_pred chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhee
Confidence 4556679999999999999988776 44457788999999999999999999777776664444443
No 132
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.61 E-value=0.26 Score=49.27 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=41.1
Q ss_pred HHHHHHHHhc--cCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC--CeeCCeeEEEEe
Q 024094 32 YEDLFEELNK--YGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG--RFYAGRPIIVDF 93 (272)
Q Consensus 32 ~eDL~~~F~k--fG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG--~~~~GR~I~ve~ 93 (272)
+|+|+.+|.. +=++++|....+. .=||+|++..||+.|++.|.- ++|.|++|.+-+
T Consensus 189 ~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 189 IEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred HHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 4667777753 5566677666543 349999999999999998854 468888887654
No 133
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=89.64 E-value=0.097 Score=31.16 Aligned_cols=26 Identities=31% Similarity=0.755 Sum_probs=18.3
Q ss_pred chhhhhhcccc-ccCCCCCccccceec
Q 024094 99 FREATCRQYEE-NTCNRGGYCNFMHLK 124 (272)
Q Consensus 99 ~r~~~c~~~~~-g~~~~g~~cn~~h~~ 124 (272)
|+...|..|.. |.|..|..|.|+|..
T Consensus 1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 1 YKTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred CccccChhhccCCccCCCCCcCccCCC
Confidence 35567887766 999999999999963
No 134
>smart00356 ZnF_C3H1 zinc finger.
Probab=88.80 E-value=0.24 Score=28.66 Aligned_cols=25 Identities=24% Similarity=0.789 Sum_probs=21.0
Q ss_pred chhhhhhccccccCCCCCcccccee
Q 024094 99 FREATCRQYEENTCNRGGYCNFMHL 123 (272)
Q Consensus 99 ~r~~~c~~~~~g~~~~g~~cn~~h~ 123 (272)
++...|..|..|.|..|..|.|+|.
T Consensus 2 ~k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 2 YKTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCCcCcCccCCCCCCCCCcCCCCc
Confidence 3445788888999999999999985
No 135
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=85.64 E-value=0.8 Score=41.80 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee----CCeeEEEEe
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY----AGRPIIVDF 93 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~----~GR~I~ve~ 93 (272)
+.-+.|...|..||+|...+|+-+..+.+.+-.+|+|...-.|.+|+..+.-.-| .+++..|+-
T Consensus 43 ~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 43 ASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred hhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 3446778899999999988887666677889999999999999999998843333 355555554
No 136
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=85.19 E-value=0.37 Score=49.47 Aligned_cols=73 Identities=12% Similarity=0.038 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhccCCeEE-EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 27 HFEDFYEDLFEELNKYGEIES-LNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~-i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
-+.+...++..+|++--.|++ |.|..-.++...+.|||+|.+++++..|...-...++.-+.|.|.-+.....
T Consensus 443 P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 443 PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 445666789999999888887 7777666778889999999999999999887788888889999987665443
No 137
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=84.59 E-value=4 Score=32.57 Aligned_cols=54 Identities=19% Similarity=0.244 Sum_probs=40.0
Q ss_pred HHHHHHHHhcc-CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCC
Q 024094 32 YEDLFEELNKY-GEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAG 86 (272)
Q Consensus 32 ~eDL~~~F~kf-G~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G 86 (272)
.++|..+.+.+ ..|..+.|+.... ..+=-|.|+|.++.+|.+-+..+||+.|+.
T Consensus 27 ~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 27 SDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred HHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34555555555 3567888886543 234579999999999999999999999863
No 138
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=84.47 E-value=0.4 Score=43.70 Aligned_cols=56 Identities=21% Similarity=0.252 Sum_probs=44.4
Q ss_pred HHHHHHhccCCeEEEEEeeCCC---------CCcee----EEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 024094 34 DLFEELNKYGEIESLNICDNLA---------DHMVG----NVYVQFREEEQAARALKSLSGRFYAGRPI 89 (272)
Q Consensus 34 DL~~~F~kfG~I~~i~v~~~~~---------~~~~G----~afVeF~~~~dA~~A~~~lnG~~~~GR~I 89 (272)
-|.++|+.||.|-.|.|..... +...+ -++|||.....|..+...|||..|.|+.-
T Consensus 90 rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk~ 158 (278)
T KOG3152|consen 90 RLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKKK 158 (278)
T ss_pred HHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCCC
Confidence 5889999999999999964321 11111 36899999999999999999999998763
No 139
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=83.55 E-value=0.93 Score=46.20 Aligned_cols=59 Identities=17% Similarity=0.051 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
.|-...+=+.-+..++|-|.++..+. |+|.+|....-+..|+..|.-..++|..|.+-.
T Consensus 49 ~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 49 SYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred hhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 44444555667788999998877665 999999999999999999999999988886544
No 140
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=78.86 E-value=6.1 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhccCCeEEEEEee
Q 024094 29 EDFYEDLFEELNKYGEIESLNICD 52 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~ 52 (272)
+.+..+|.++|+..|+|.-+.|-.
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEcc
Confidence 467899999999999998877753
No 141
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=77.00 E-value=5.5 Score=34.71 Aligned_cols=63 Identities=19% Similarity=0.125 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCC--CceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLAD--HMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~--~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
-+++.+||.+.-+ |++..|.+-..... ...|-+||+|...+.|.++++. .+..+.-..|+..+
T Consensus 119 td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 119 TDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred CHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 3567788887777 99999988744333 4579999999999999988774 44445544544433
No 142
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=76.04 E-value=5.6 Score=34.95 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=42.4
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCC
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAG 86 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G 86 (272)
.+.||++-.-+-|.|.-..|..+ |++.|+|...++.+-|+..|+...|.-
T Consensus 128 SWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 128 SWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred chHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhccccccC
Confidence 34688888889999988888764 788999999999999999999887753
No 143
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=72.98 E-value=6.2 Score=29.67 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=26.4
Q ss_pred CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC
Q 024094 44 EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA 85 (272)
Q Consensus 44 ~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~ 85 (272)
.|.+|.+++. .+||+|||=.++.++.+|+..+-+....
T Consensus 33 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 33 NIYSIFAPDS----LKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp ---EEEE-TT----STSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred ceEEEEEeCC----CceEEEEEeCCHHHHHHHHhcccceeec
Confidence 5666666654 4699999999999999999888776543
No 144
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.95 E-value=12 Score=37.87 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=30.6
Q ss_pred EEEEEecCHHHHHHHHHHhCCCeeC--CeeEEEEeecC
Q 024094 61 NVYVQFREEEQAARALKSLSGRFYA--GRPIIVDFSPV 96 (272)
Q Consensus 61 ~afVeF~~~~dA~~A~~~lnG~~~~--GR~I~ve~s~~ 96 (272)
||.|+|.+.+.|.+.+..++|.+|. +-.|-+-|.|-
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 7999999999999999999999996 55666666654
No 145
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=71.72 E-value=1.2 Score=46.97 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
.....+|...|..||.|..|.|..+.-+...-|+||.|.+...|..|...|.+..|.--.+.+-+.
T Consensus 383 kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 383 KLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred chhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 356689999999999999999987654445579999999999999999999999886556665554
No 146
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=70.22 E-value=7.8 Score=36.77 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=19.3
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCCeeC
Q 024094 58 MVGNVYVQFREEEQAARALKSLSGRFYA 85 (272)
Q Consensus 58 ~~G~afVeF~~~~dA~~A~~~lnG~~~~ 85 (272)
+.--+||-|.-+.-|.+|+. |-++.+.
T Consensus 172 lRT~v~vry~pe~iACaciy-LaAR~~e 198 (367)
T KOG0835|consen 172 LRTDVFVRYSPESIACACIY-LAARNLE 198 (367)
T ss_pred cccceeeecCHHHHHHHHHH-HHHhhhc
Confidence 44578999998777777765 6665554
No 147
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.08 E-value=4 Score=35.52 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=44.1
Q ss_pred HHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCe-eEEEEeecC
Q 024094 34 DLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGR-PIIVDFSPV 96 (272)
Q Consensus 34 DL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR-~I~ve~s~~ 96 (272)
+.+.+|-+|-+..-+.+.. +.+++-|-|.+.+.|+.|...+++..|.|. .+++.|++.
T Consensus 31 ~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 3444555665555555544 236889999999999999999999999999 888888754
No 148
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=67.78 E-value=7.2 Score=39.17 Aligned_cols=43 Identities=14% Similarity=0.369 Sum_probs=33.7
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCCe---eCC-eeEEEEeecCCC
Q 024094 56 DHMVGNVYVQFREEEQAARALKSLSGRF---YAG-RPIIVDFSPVTD 98 (272)
Q Consensus 56 ~~~~G~afVeF~~~~dA~~A~~~lnG~~---~~G-R~I~ve~s~~~~ 98 (272)
....|||||-|.+.+++..+++++||+. |.+ +...+.|+..+.
T Consensus 428 kcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 428 KCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred ccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 4568999999999999999999999996 344 444677765543
No 149
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=67.37 E-value=3.5 Score=39.41 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhccC--CeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 27 HFEDFYEDLFEELNKYG--EIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG--~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
-|-++-+||.+.+...| .|.+|++..+. .+.++|||.|..-+....++-++.|--+++-|..-+|.-.
T Consensus 89 ~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 89 LWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 44567789988888777 56777777664 4889999999999999999999999999998876665543
No 150
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.03 E-value=11 Score=37.17 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=41.2
Q ss_pred HHHHHHHHhcc-CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCC
Q 024094 32 YEDLFEELNKY-GEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAG 86 (272)
Q Consensus 32 ~eDL~~~F~kf-G~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G 86 (272)
.-||..++..| -.|.+|.|+.+.. ..+=.|.|+|.+.++|..-+..+||+.|+.
T Consensus 88 ~~Dll~F~~~~~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 88 SHDLLRFCASFIKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred HHHHHHHHHHHhhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34666666654 4688999987432 123468999999999999999999999863
No 151
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=66.95 E-value=19 Score=30.08 Aligned_cols=49 Identities=14% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCe
Q 024094 31 FYEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRF 83 (272)
Q Consensus 31 ~~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~ 83 (272)
+.+.|...+...| .|.+|.++.. ..||+||+....+++..|++.+.|..
T Consensus 21 V~~~L~~~~~~~~~~i~~i~vp~~----fpGYVfVe~~~~~~~~~~i~~v~~v~ 70 (153)
T PRK08559 21 VALMLAMRAKKENLPIYAILAPPE----LKGYVLVEAESKGAVEEAIRGIPHVR 70 (153)
T ss_pred HHHHHHHHHHhCCCcEEEEEccCC----CCcEEEEEEEChHHHHHHHhcCCCEe
Confidence 3344554443222 2777777765 35999999998899999998887653
No 152
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=65.89 E-value=6.1 Score=40.98 Aligned_cols=10 Identities=20% Similarity=0.497 Sum_probs=4.4
Q ss_pred EEEEecCHHH
Q 024094 62 VYVQFREEEQ 71 (272)
Q Consensus 62 afVeF~~~~d 71 (272)
+||.|.++..
T Consensus 695 ~~~k~~de~~ 704 (877)
T KOG0151|consen 695 NPVKYDDEDR 704 (877)
T ss_pred cccccchhhh
Confidence 4445544433
No 153
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=64.01 E-value=11 Score=27.41 Aligned_cols=60 Identities=13% Similarity=0.249 Sum_probs=43.8
Q ss_pred HHHHHHHhccC-CeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 33 EDLFEELNKYG-EIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 33 eDL~~~F~kfG-~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
++|.+.|...| +|..|.-+... +..+.-..||+.+...+..+ .++=+.+.+..|.||...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 57888888888 67777666544 55566788999988766444 355577889999998753
No 154
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=60.60 E-value=4.4 Score=38.49 Aligned_cols=13 Identities=15% Similarity=0.621 Sum_probs=9.3
Q ss_pred ceeEEEEEecCHH
Q 024094 58 MVGNVYVQFREEE 70 (272)
Q Consensus 58 ~~G~afVeF~~~~ 70 (272)
..||.||.|..+.
T Consensus 159 alGFmYiRYtqpp 171 (453)
T KOG2888|consen 159 ALGFMYIRYTQPP 171 (453)
T ss_pred hheeeEEeecCCh
Confidence 4688888887643
No 155
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=59.26 E-value=22 Score=38.28 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=35.5
Q ss_pred CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 44 EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 44 ~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
+|++|...+ |.+||+|||-..+.+...||+.|-+.+.. +.|.|-..
T Consensus 199 qI~Sv~a~D----~lkGyIYIEA~KqshV~~Ai~gv~niy~~-~~~lVPik 244 (1024)
T KOG1999|consen 199 QIKSVFAKD----HLKGYIYIEADKQSHVKEAIEGVRNIYAN-RILLVPIK 244 (1024)
T ss_pred eEEEEEecc----ccceeEEEEechhHHHHHHHhhhhhheec-cEEEEehh
Confidence 344444444 56799999999999999999999988777 66666553
No 156
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=58.75 E-value=6.3 Score=37.10 Aligned_cols=6 Identities=17% Similarity=0.855 Sum_probs=3.0
Q ss_pred hhhhcc
Q 024094 102 ATCRQY 107 (272)
Q Consensus 102 ~~c~~~ 107 (272)
.+|+.|
T Consensus 190 eVCGa~ 195 (319)
T KOG0796|consen 190 EVCGAF 195 (319)
T ss_pred HhhhHH
Confidence 455544
No 157
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=57.39 E-value=12 Score=36.81 Aligned_cols=39 Identities=26% Similarity=0.458 Sum_probs=34.8
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCe-eCCeeEEEEeecCCC
Q 024094 60 GNVYVQFREEEQAARALKSLSGRF-YAGRPIIVDFSPVTD 98 (272)
Q Consensus 60 G~afVeF~~~~dA~~A~~~lnG~~-~~GR~I~ve~s~~~~ 98 (272)
||+||.+.++.-|.+|++.|+|+. +-|+++.|+++-.+.
T Consensus 38 gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 38 GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 899999999999999999999985 789999999985533
No 158
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=56.49 E-value=15 Score=27.00 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHHHhccC-CeEEEEEeeCCC-CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 33 EDLFEELNKYG-EIESLNICDNLA-DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 33 eDL~~~F~kfG-~I~~i~v~~~~~-~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
+.|++.|.++| +++.|..+.+.. ..+.-..||+.....+... .|+=+.+.|..|+||-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46888899999 788888775543 4455677888887654444 466678889999988643
No 159
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=53.99 E-value=18 Score=36.24 Aligned_cols=52 Identities=13% Similarity=0.267 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEee--CCC--CCcee---EEEEEecCHHHHHHHHHH
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICD--NLA--DHMVG---NVYVQFREEEQAARALKS 78 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~--~~~--~~~~G---~afVeF~~~~dA~~A~~~ 78 (272)
..++..++.|...|..||.|. |..+. +.. -.++| |||+.|+++.....-+.+
T Consensus 267 lp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 267 LPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred CCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 356677888999999999984 34441 111 23456 999999999887654443
No 160
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=53.20 E-value=18 Score=38.02 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=7.0
Q ss_pred HHHHHHHHHhccCC
Q 024094 31 FYEDLFEELNKYGE 44 (272)
Q Consensus 31 ~~eDL~~~F~kfG~ 44 (272)
+..-|.+++..-|.
T Consensus 127 ~IqpLlDm~~~s~~ 140 (894)
T KOG0132|consen 127 IIQPLLDMADGSGL 140 (894)
T ss_pred HHHHHHHHHhccCc
Confidence 33445555555555
No 161
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=48.13 E-value=53 Score=25.32 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhccC-CeEEEEEe------eCCCCCcee-EEEEEecCHHHHHHHHH
Q 024094 26 EHFEDFYEDLFEELNKYG-EIESLNIC------DNLADHMVG-NVYVQFREEEQAARALK 77 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG-~I~~i~v~------~~~~~~~~G-~afVeF~~~~dA~~A~~ 77 (272)
+..+++.+.|..++.+.| +|..+... .+...+..| |+++.|.-..+|.+.++
T Consensus 21 ~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 21 EELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 456667778888888776 77776543 233455677 69999998777777765
No 162
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=47.92 E-value=52 Score=30.85 Aligned_cols=62 Identities=15% Similarity=0.266 Sum_probs=43.3
Q ss_pred HHHHHHhccCCeEEEEEeeCC--------CCCceeEEEEEecCHHHHHHHHHHhCC------CeeCCeeEEEEeec
Q 024094 34 DLFEELNKYGEIESLNICDNL--------ADHMVGNVYVQFREEEQAARALKSLSG------RFYAGRPIIVDFSP 95 (272)
Q Consensus 34 DL~~~F~kfG~I~~i~v~~~~--------~~~~~G~afVeF~~~~dA~~A~~~lnG------~~~~GR~I~ve~s~ 95 (272)
.+...|.+||+|++|.|+... .+.....+.+.|-+.+.|..-+..+-- ..+.-..|+|.|..
T Consensus 31 ~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 31 SFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEE
Confidence 455678899999999998654 233456789999999988765543221 23567777777764
No 163
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=45.99 E-value=1.1e+02 Score=22.01 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=32.2
Q ss_pred HHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecC---HHHHHHHHHHhCC
Q 024094 32 YEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFRE---EEQAARALKSLSG 81 (272)
Q Consensus 32 ~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~---~~dA~~A~~~lnG 81 (272)
..+|...|.++| .|.+|...........=..||+++- .....++++.|..
T Consensus 15 L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 15 LYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 457888999986 6778765433222333356777773 5566777777765
No 164
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=45.96 E-value=17 Score=34.65 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=12.4
Q ss_pred ChHHHhHHHHHHHHHHHHHH
Q 024094 20 DPRKIQEHFEDFYEDLFEEL 39 (272)
Q Consensus 20 ~~~~~~~~yd~~~eDL~~~F 39 (272)
.|.+|+.+|+.+.+|=+++=
T Consensus 170 pp~dLw~WyEpyldDdeeid 189 (453)
T KOG2888|consen 170 PPADLWDWYEPYLDDDEEID 189 (453)
T ss_pred ChhHHHHHhhhhccchhhcC
Confidence 45667777776666655443
No 165
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=45.69 E-value=23 Score=32.63 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=26.9
Q ss_pred EEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 62 VYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 62 afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
|||+|+++.+|..|.+.+.... ...+.|+.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999765554 356688887763
No 166
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=44.29 E-value=90 Score=22.26 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=32.0
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 80 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln 80 (272)
-..+|.+.+.++| +.-..|.-.. .-+++|+-+.+...|++++..|.
T Consensus 35 ~i~~~~~~~~~~G-a~~~~~sGsG---~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 35 EIDELKEAAEENG-ALGAKMSGSG---GGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHHTT-ESEEEEETTS---SSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCceecCCCC---CCCeEEEEECCHHHHHHHHHHHH
Confidence 3456777778899 5455555321 12689999999999988888764
No 167
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=41.93 E-value=1.2e+02 Score=21.34 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=31.7
Q ss_pred HHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecC---HHHHHHHHHHhCC
Q 024094 32 YEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFRE---EEQAARALKSLSG 81 (272)
Q Consensus 32 ~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~---~~dA~~A~~~lnG 81 (272)
..+|...|..+| .|..|.-.........=..||+++. ....+.+++.|..
T Consensus 13 L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 13 LAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred HHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 457888999997 6777743322222333467899984 4556677776654
No 168
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=41.52 E-value=87 Score=25.53 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=26.4
Q ss_pred eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCe
Q 024094 45 IESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRF 83 (272)
Q Consensus 45 I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~ 83 (272)
|..+.++.. ..||+||++....+...++..+.|..
T Consensus 28 ~~~~~vp~~----fpGYvFV~~~~~~~~~~~i~~~~gv~ 62 (145)
T TIGR00405 28 VYSILAPES----LKGYILVEAETKIDMRNPIIGVPHVR 62 (145)
T ss_pred EEEEEccCC----CCcEEEEEEECcHHHHHHHhCCCCEE
Confidence 445555553 46999999998888888888887754
No 169
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.41 E-value=1.2e+02 Score=31.15 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC--CCee------CCeeEEEEeecCC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS--GRFY------AGRPIIVDFSPVT 97 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln--G~~~------~GR~I~ve~s~~~ 97 (272)
..-.++-+.|-+.|..-+-|..|.+.-+ ||.++.+....-+......+. +..+ .|++|.|||+...
T Consensus 54 ~~P~eiA~~i~~~l~~~~~~~~veiaGp------gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN 127 (577)
T COG0018 54 KNPREIAEEIAEKLDTDEIIEKVEIAGP------GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN 127 (577)
T ss_pred CCHHHHHHHHHHhccccCcEeEEEEcCC------CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC
Confidence 4455677788888888778888888864 788888876555555555554 3444 6899999998775
Q ss_pred Cc
Q 024094 98 DF 99 (272)
Q Consensus 98 ~~ 99 (272)
.-
T Consensus 128 pt 129 (577)
T COG0018 128 PT 129 (577)
T ss_pred CC
Confidence 53
No 170
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=39.94 E-value=1.9e+02 Score=22.90 Aligned_cols=56 Identities=13% Similarity=0.195 Sum_probs=39.4
Q ss_pred HhHHHHHHHHHHHHHHhccCCeEEEEEe--eCCC--------------CCceeEEEEEecCHHHHHHHHHHh
Q 024094 24 IQEHFEDFYEDLFEELNKYGEIESLNIC--DNLA--------------DHMVGNVYVQFREEEQAARALKSL 79 (272)
Q Consensus 24 ~~~~yd~~~eDL~~~F~kfG~I~~i~v~--~~~~--------------~~~~G~afVeF~~~~dA~~A~~~l 79 (272)
-.+.|.+.-+..-.+|..||.+.-+... +-.. +...-|.+|+|.+.+...+|..+|
T Consensus 14 nk~aY~~~A~~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 14 NKDAYRAMAEKAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp GHHHHHHHHHHHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 3467888888889999999977655432 2221 234568999999999888887765
No 171
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=39.18 E-value=1.7e+02 Score=22.16 Aligned_cols=59 Identities=19% Similarity=0.153 Sum_probs=40.7
Q ss_pred CChHHHh---HHHHHHHHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 024094 19 LDPRKIQ---EHFEDFYEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG 81 (272)
Q Consensus 19 ~~~~~~~---~~yd~~~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG 81 (272)
+|++-++ +. ..-.+.+.++++++| +|+++.+.... --..+-+++.+.+.|.++.-.+..
T Consensus 7 ~T~~g~~~~~~~-~~R~~a~~~~~e~~Gg~l~~~y~t~G~---yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 7 YTPEGAKGIKDS-PDRAEAVRALIEALGGKLKSFYWTLGE---YDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred eCHHHHHHHhhc-HHHHHHHHHHHHHcCCEEEEEEEecCC---CCEEEEEEcCCHHHHHHHHHHHHc
Confidence 4555443 22 566677888888876 89999887432 236788999999988877655543
No 172
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=37.30 E-value=48 Score=28.46 Aligned_cols=42 Identities=21% Similarity=0.557 Sum_probs=30.3
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCCeeC---C--eeEEEEeecCCCc
Q 024094 58 MVGNVYVQFREEEQAARALKSLSGRFYA---G--RPIIVDFSPVTDF 99 (272)
Q Consensus 58 ~~G~afVeF~~~~dA~~A~~~lnG~~~~---G--R~I~ve~s~~~~~ 99 (272)
...-|||.|.+.+++..-+..++|..|- | -+..|+|++-+.+
T Consensus 54 ~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 54 TYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPYQKV 100 (176)
T ss_dssp --EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS---
T ss_pred cceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcchhcc
Confidence 3568999999999999999999998772 2 3457899887655
No 173
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=36.75 E-value=1.2e+02 Score=23.65 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhccCCeE-----EEEEeeCCCCCceeEEEEEecCHHHHHHHHH
Q 024094 26 EHFEDFYEDLFEELNKYGEIE-----SLNICDNLADHMVGNVYVQFREEEQAARALK 77 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~-----~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~ 77 (272)
+.|.+-..-+...|++||-=- ++..+... ..+.-.+.|||.+.+.|..|+.
T Consensus 16 e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~-w~ptr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 16 EQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGE-WRPTRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred HHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCC-CCcccEEEEEcCCHHHHHHHhc
Confidence 344455566677777776321 11112111 2223589999999999987753
No 174
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=36.24 E-value=2.2e+02 Score=29.38 Aligned_cols=35 Identities=6% Similarity=0.183 Sum_probs=30.6
Q ss_pred eEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 60 GNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 60 G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
.|.||+-.. ..|...+..|++.++.|++|.|+.+.
T Consensus 527 ~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 527 SHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred CceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 478999884 67889999999999999999999874
No 175
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.01 E-value=46 Score=23.98 Aligned_cols=28 Identities=21% Similarity=0.121 Sum_probs=22.8
Q ss_pred EEEEEecCHHHHHHHHHHhCCCeeCCee
Q 024094 61 NVYVQFREEEQAARALKSLSGRFYAGRP 88 (272)
Q Consensus 61 ~afVeF~~~~dA~~A~~~lnG~~~~GR~ 88 (272)
+.+|.|.+..+|.+|-+.|...-+..+.
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 6899999999999999988876554433
No 176
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=35.67 E-value=66 Score=32.32 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=36.9
Q ss_pred HHHHHHHh-ccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHH
Q 024094 33 EDLFEELN-KYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKS 78 (272)
Q Consensus 33 eDL~~~F~-kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~ 78 (272)
++|-.+|+ -||.|+-+-|- +++-+-++|-+=|+|.+..+=.+||.+
T Consensus 385 ~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 385 EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred HHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 45666776 59999999886 445567899999999999988888874
No 177
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=35.65 E-value=1.4e+02 Score=26.20 Aligned_cols=67 Identities=19% Similarity=0.257 Sum_probs=42.9
Q ss_pred ChHHHhHHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC-------CeeCCeeEE-E
Q 024094 20 DPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG-------RFYAGRPII-V 91 (272)
Q Consensus 20 ~~~~~~~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG-------~~~~GR~I~-v 91 (272)
.+++|...|..|+.-|..+....|-=..-.-++ -+-+...+.+.|+.+..+|.- ..++||+|. +
T Consensus 4 ~~~~l~~dl~~F~~ki~~l~~~l~l~l~~~~~D--------HialRvn~~~~A~~~~~~l~~~G~llSen~INGRPI~l~ 75 (185)
T PF06185_consen 4 ELQDLIGDLPRFEQKIQQLAQKLGLDLSQYEID--------HIALRVNSNETAERWKQALLQCGELLSENMINGRPICLF 75 (185)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHT---TT-EEE--------EEEEE-S-HHHHHHHHHHHTTTEEEEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCccccCCc--------EEEEecCCHHHHHHHHHHHHHhChhhhhceeCCeeEEEE
Confidence 456788899999999999888877311111111 345566778888888777643 367999996 5
Q ss_pred Eee
Q 024094 92 DFS 94 (272)
Q Consensus 92 e~s 94 (272)
++.
T Consensus 76 ~L~ 78 (185)
T PF06185_consen 76 KLN 78 (185)
T ss_dssp EEE
T ss_pred EcC
Confidence 554
No 178
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=34.96 E-value=67 Score=25.72 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=21.3
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHH
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQA 72 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA 72 (272)
+.|.+.|..|.+++-. ++.+..+ ..|+|.|+|...-..
T Consensus 32 ~~l~~~l~~f~p~kv~-~l~~~~g-h~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 32 EELLDKLAEFNPLKVK-PLYGKQG-HTGFAIVEFNKDWSG 69 (116)
T ss_dssp HHHHHHHHH---SEEE-EEEETTE-EEEEEEEE--SSHHH
T ss_pred HHHHHHHHhcCCceeE-ECcCCCC-CcEEEEEEECCChHH
Confidence 5677778889988644 4433333 469999999885543
No 179
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=34.37 E-value=1.1e+02 Score=24.99 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhccCC-eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 30 DFYEDLFEELNKYGE-IESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~-I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
++..-+...|..+|. +...+|+.-......|.+=+.=...+.|.+|+-.+. .++|++|.|.-..+
T Consensus 37 ~I~~s~l~llG~~gta~~~~~lv~~~~~t~~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv~I~~lgv 102 (124)
T COG1369 37 LIRRSLLSLLGDVGTAKANPRLVKYYFSTGTGIVRCRREYVDLVRAALMLAR--EVNGKRVIIVVLGV 102 (124)
T ss_pred HHHHHHHHHcCcccccccceeEEEEeccCCceEEEEechhHHHHHHHHHHHH--HhCCceEEEEEeec
Confidence 455566666666653 334555533222456777788888888888988776 78888888776544
No 180
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=34.04 E-value=15 Score=34.92 Aligned_cols=26 Identities=23% Similarity=0.759 Sum_probs=21.5
Q ss_pred CchhhhhhccccccCCCCCcccccee
Q 024094 98 DFREATCRQYEENTCNRGGYCNFMHL 123 (272)
Q Consensus 98 ~~r~~~c~~~~~g~~~~g~~cn~~h~ 123 (272)
.....+|+-|+.|.|.+|..|+|+|.
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 45566788889999999999999995
No 181
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=33.98 E-value=75 Score=31.72 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=40.7
Q ss_pred HHHHHHh----ccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 34 DLFEELN----KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 34 DL~~~F~----kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
||..+|- .+|-|+++.|.-.........+++.|.+.++|..|+..|-... -.+..+++..
T Consensus 205 dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~--~~p~~~el~d 268 (499)
T PRK11230 205 DLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAG--IIPGGLEMMD 268 (499)
T ss_pred chHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhcC--CCcEEEEeeC
Confidence 5666654 6899999988633333345678899999999999988764321 1355666654
No 182
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=33.90 E-value=22 Score=32.95 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=48.4
Q ss_pred HHHHHHhccCCeEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 34 DLFEELNKYGEIESLNICD-NLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 34 DL~~~F~kfG~I~~i~v~~-~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
++..++.++|.+..+.+.. ......+|+++|.|+..+.+..|+.........+..+...+...
T Consensus 104 ~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 104 EDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 5667788999888777764 33456789999999999999999985555677777777776544
No 183
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=33.65 E-value=1.7e+02 Score=20.93 Aligned_cols=49 Identities=8% Similarity=0.196 Sum_probs=28.8
Q ss_pred HHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEec-CHHHHHHHHHHhCC
Q 024094 33 EDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFR-EEEQAARALKSLSG 81 (272)
Q Consensus 33 eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~-~~~dA~~A~~~lnG 81 (272)
-+|...|+.+| .|..|.=-........=..||+|+ +.+..++|+..|..
T Consensus 15 ~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 15 ARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 47888899998 455443321111222235678888 44455678877754
No 184
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=32.18 E-value=1.8e+02 Score=20.34 Aligned_cols=49 Identities=18% Similarity=0.254 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhccC-CeEE----EEEeeCCCCCceeEEEEEecCHHHHHHHH
Q 024094 27 HFEDFYEDLFEELNKYG-EIES----LNICDNLADHMVGNVYVQFREEEQAARAL 76 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG-~I~~----i~v~~~~~~~~~G~afVeF~~~~dA~~A~ 76 (272)
.|.+-.+-+..++.+|| +|+- ..+... .....-.+.|+|.+.+.|.+.+
T Consensus 3 ~~~~Y~~~~~~~l~~~GG~~l~~~~~~~~leG-~~~~~~~viieFPs~~aa~~~~ 56 (65)
T PF07045_consen 3 AYQEYREAVPPILEKYGGRVLARGGEPEVLEG-DWDPDRVVIIEFPSMEAAKAWY 56 (65)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEECEEEEEEES-T-SSSEEEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCceeEEec-CCCCCeEEEEECCCHHHHHHHH
Confidence 45555667777888887 3332 222332 2233468999999999988664
No 185
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=30.69 E-value=76 Score=23.95 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=19.3
Q ss_pred eEEEEEecCHHHHHHHHHHhCCC
Q 024094 60 GNVYVQFREEEQAARALKSLSGR 82 (272)
Q Consensus 60 G~afVeF~~~~dA~~A~~~lnG~ 82 (272)
||+||++.-..++..++..+.|.
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCCc
Confidence 99999999777778888887775
No 186
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=30.46 E-value=22 Score=33.69 Aligned_cols=27 Identities=41% Similarity=0.923 Sum_probs=22.8
Q ss_pred CCc-hhhhhhccccccCCCCCc-ccccee
Q 024094 97 TDF-REATCRQYEENTCNRGGY-CNFMHL 123 (272)
Q Consensus 97 ~~~-r~~~c~~~~~g~~~~g~~-cn~~h~ 123 (272)
+.| ..++|++|.++.|.++.. |.|.|-
T Consensus 32 ~~wl~~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 32 TKWLTLEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred cchhHHHHHHHHHhccccCCCccccccCC
Confidence 445 347999999999999987 999995
No 187
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=30.37 E-value=11 Score=35.16 Aligned_cols=54 Identities=31% Similarity=0.453 Sum_probs=35.3
Q ss_pred HHHHHHHHHhccCCeEEEEEe--eCC----CCCc-----eeE---------EEEEecCHHHHHHHHHHhCCCee
Q 024094 31 FYEDLFEELNKYGEIESLNIC--DNL----ADHM-----VGN---------VYVQFREEEQAARALKSLSGRFY 84 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~--~~~----~~~~-----~G~---------afVeF~~~~dA~~A~~~lnG~~~ 84 (272)
.+.-|...|..||.|..|.|+ ++. +++. .|| |||+|-.-..-..|+.+|-|..+
T Consensus 174 se~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 174 SEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred hHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 345677899999999888764 442 1221 222 46777766666677777777754
No 188
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=30.23 E-value=28 Score=28.14 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
++..+...|..+....|.+.-..|-. ++..++|.+++++..++. .....|+|..|.++-
T Consensus 30 ~~~~l~~~l~~~W~~~~~~~i~~l~~-------~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~ 88 (153)
T PF14111_consen 30 SLSALEQELAKIWKLKGGVKIRDLGD-------NLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQR 88 (153)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEEeCC-------CeEEEEEEeccceeEEEe-cccccccccchhhhh
Confidence 46677778888777777665444433 789999999999998876 455567776665554
No 189
>KOG3323 consensus D-Tyr-tRNA (Tyr) deacylase [Translation, ribosomal structure and biogenesis]
Probab=29.50 E-value=1.1e+02 Score=25.61 Aligned_cols=42 Identities=19% Similarity=0.441 Sum_probs=28.7
Q ss_pred hHHHhHHHHHHHHHHHHHHh-------ccCCeEEEEEeeCCCCCceeEEEEEecC
Q 024094 21 PRKIQEHFEDFYEDLFEELN-------KYGEIESLNICDNLADHMVGNVYVQFRE 68 (272)
Q Consensus 21 ~~~~~~~yd~~~eDL~~~F~-------kfG~I~~i~v~~~~~~~~~G~afVeF~~ 68 (272)
+++..+.|..|.+-|...+. +||....|.+..+ |=+-|.|+.
T Consensus 99 ~~ea~elY~qfl~~l~k~~~~~~ikdG~fGamm~v~l~n~------GPvTi~~es 147 (149)
T KOG3323|consen 99 GEEAKELYNQFLELLRKAYGADKIKDGKFGAMMQVHLVND------GPVTILLES 147 (149)
T ss_pred chhhHHHHHHHHHHHHHHhCchhhhccccceEEEEEEecC------CCeEEEecC
Confidence 45666777777776666553 6899999988865 445565554
No 190
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=29.19 E-value=1.4e+02 Score=28.29 Aligned_cols=50 Identities=24% Similarity=0.400 Sum_probs=31.6
Q ss_pred CCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHH----HHHhccC-CeEEEEEee
Q 024094 3 QRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLF----EELNKYG-EIESLNICD 52 (272)
Q Consensus 3 ~np~~~~~~~~~~~~~~~~~~~~~~yd~~~eDL~----~~F~kfG-~I~~i~v~~ 52 (272)
||||+++.-+-....+--+.-|.+||++..+|=- ....+|| .+.-|+++.
T Consensus 120 PnppvVtfDVFD~p~pglpkpire~~~dVmedP~eWArk~Vk~fgadmvTiHlIs 174 (403)
T COG2069 120 PNPPVVTFDVFDIPRPGLPKPIREHYDDVMEDPGEWARKCVKKFGADMVTIHLIS 174 (403)
T ss_pred CCCCeeEEEeccCCCCCCchhHHHHHHHHhhCHHHHHHHHHHHhCCceEEEEeec
Confidence 7888766432221223346677899987776643 3456798 677888874
No 191
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=29.11 E-value=66 Score=25.43 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=18.8
Q ss_pred CCceeEEEEEecCHHHHHHHHHHh
Q 024094 56 DHMVGNVYVQFREEEQAARALKSL 79 (272)
Q Consensus 56 ~~~~G~afVeF~~~~dA~~A~~~l 79 (272)
+...-|.+|+|.+.+.+.+|+..|
T Consensus 63 dE~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 63 DEEVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred CcEEEEEEEEcCchhHHHHHHHHh
Confidence 345679999999998888887654
No 192
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=28.33 E-value=29 Score=32.53 Aligned_cols=30 Identities=27% Similarity=0.697 Sum_probs=25.2
Q ss_pred CCchhhhhhccccccCCCCCccccceeccc
Q 024094 97 TDFREATCRQYEENTCNRGGYCNFMHLKRI 126 (272)
Q Consensus 97 ~~~r~~~c~~~~~g~~~~g~~cn~~h~~~~ 126 (272)
.+-+...|-.|..|.|.+|..|.|.|-..+
T Consensus 88 vDPKSvvCafFk~g~C~KG~kCKFsHdl~~ 117 (343)
T KOG1763|consen 88 VDPKSVVCAFFKQGTCTKGDKCKFSHDLAV 117 (343)
T ss_pred CCchHHHHHHHhccCCCCCCcccccchHHH
Confidence 445677899999999999999999997543
No 193
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=27.91 E-value=5.7 Score=38.91 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=51.2
Q ss_pred HHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 32 YEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 32 ~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
++-|..++..||.|+.|.++.... -...+-|+|...+.+..||..|+|..|...-+.|.|.+-
T Consensus 94 wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 94 WEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 456677889999999998864322 124678999999999999999999999999999988653
No 194
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.88 E-value=2e+02 Score=19.61 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=29.5
Q ss_pred HHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 024094 33 EDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 80 (272)
Q Consensus 33 eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln 80 (272)
.+|-.+|.++| .|..+.+.....+ ..+...|.+....+.+.+++.|.
T Consensus 16 ~~l~~~l~~~~i~i~~~~~~~~~~~-~~~~~~i~v~~~~~~~~~~~~L~ 63 (69)
T cd04909 16 AEVTQILGDAGISIKNIEILEIREG-IGGILRISFKTQEDRERAKEILK 63 (69)
T ss_pred HHHHHHHHHcCCCceeeEeEEeecC-CcEEEEEEECCHHHHHHHHHHHH
Confidence 46778888887 6777765443211 24666777866556666666553
No 195
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=25.54 E-value=2.3e+02 Score=21.32 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhccC-CeEEEEE------eeCCCCCcee-EEEEEecCHHHHHHHHH
Q 024094 28 FEDFYEDLFEELNKYG-EIESLNI------CDNLADHMVG-NVYVQFREEEQAARALK 77 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG-~I~~i~v------~~~~~~~~~G-~afVeF~~~~dA~~A~~ 77 (272)
...+.+.+.+++...| .|..+.- +.+...+..| |+++.|....++.+.++
T Consensus 17 ~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LaY~I~k~~~G~Y~~~~f~~~~~~i~el~ 74 (93)
T TIGR00166 17 VKGQIERYKKVITLNGAEIVRSEDWGKRRLAYPIKKQLRAHYVLMNFSGEAQVIKEFE 74 (93)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeecceecceEcCCCceEEEEEEEEEeCHHHHHHHH
Confidence 5566677777777775 6766653 2333456667 78888988777766665
No 196
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.39 E-value=47 Score=29.72 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhc-cCCeEEEEEeeCCCCCceeEEEEEecCH
Q 024094 30 DFYEDLFEELNK-YGEIESLNICDNLADHMVGNVYVQFREE 69 (272)
Q Consensus 30 ~~~eDL~~~F~k-fG~I~~i~v~~~~~~~~~G~afVeF~~~ 69 (272)
.+.+||..+|.+ ||.-..-. ..+-|+||+|.+-
T Consensus 86 ~YLedL~~EF~~~~~~~~~~~-------~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 86 SYLEDLAQEFDKSYGKNIIQP-------ASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHHHHhcccccCCc-------cCCCeeEEehhHH
Confidence 345788888864 77532111 2345999999874
No 197
>COG0858 RbfA Ribosome-binding factor A [Translation, ribosomal structure and biogenesis]
Probab=25.20 E-value=1.8e+02 Score=23.41 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecC--HHHH---HHHHHHhCCCe--eCCeeEEEEeecCCCchh
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFRE--EEQA---ARALKSLSGRF--YAGRPIIVDFSPVTDFRE 101 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~--~~dA---~~A~~~lnG~~--~~GR~I~ve~s~~~~~r~ 101 (272)
.+..+|++.--+.+.|..|.|-.+. ....|||++-. ..+. .+|++...|.. +-|+.|.+-+.|.-.|..
T Consensus 21 il~~eikDprl~~~~Vt~V~vS~Dl---~~A~Vyvt~l~~~~~~~~~~~~~L~~A~g~ir~~l~~~~~lr~~PeL~F~~ 96 (118)
T COG0858 21 ILQREIKDPRLGLVTVTDVEVSKDL---SHAKVYVTVLGDEESSKAEILAALNKAKGFIRSELGKRLRLRKTPELHFVY 96 (118)
T ss_pred HHHHHccCCCcCceEEEEEEEcCCC---ceEEEEEEecCCchhhHHHHHHHHHHhHHHHHHHHHHhCCeEeCCeEEEEe
Confidence 3333444444455567777776443 24678888632 2233 44555544542 467888888877766543
No 198
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=24.65 E-value=39 Score=31.93 Aligned_cols=6 Identities=50% Similarity=0.700 Sum_probs=2.2
Q ss_pred HHHHHH
Q 024094 70 EQAARA 75 (272)
Q Consensus 70 ~dA~~A 75 (272)
++|++|
T Consensus 148 eeaq~~ 153 (319)
T KOG0796|consen 148 EEAQKA 153 (319)
T ss_pred HHHHHH
Confidence 333333
No 199
>PRK11700 hypothetical protein; Provisional
Probab=24.31 E-value=3.5e+02 Score=23.70 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=46.6
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHH-------hCCCeeCCeeE
Q 024094 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKS-------LSGRFYAGRPI 89 (272)
Q Consensus 17 ~~~~~~~~~~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~-------lnG~~~~GR~I 89 (272)
..+.+.+|..++..|+..|..+....|-=..-.-++ -+-+...+.+.|+....+ |....++||+|
T Consensus 6 ~~~~~~~l~~dl~~F~~ki~~la~~L~ldl~~~~~D--------HialR~n~~~tAe~w~~~l~~~G~llSen~INGRPI 77 (187)
T PRK11700 6 SIDELQDLLADLPRFEQKIQELADRLGLDLSQLEAD--------HIALRCNQNETAERWRQGFLQCGELLSENIINGRPI 77 (187)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCCCcccccCc--------EEEEeeCCHHHHHHHHHHHHHhchhhhccccCCeeE
Confidence 345677888899999999999988887321111122 234566667777755443 44557899999
Q ss_pred E-EEeecC
Q 024094 90 I-VDFSPV 96 (272)
Q Consensus 90 ~-ve~s~~ 96 (272)
. +++.+.
T Consensus 78 ~l~~L~qP 85 (187)
T PRK11700 78 CLFELDQP 85 (187)
T ss_pred EEEEcCCC
Confidence 6 556543
No 200
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=24.20 E-value=34 Score=31.19 Aligned_cols=33 Identities=30% Similarity=0.646 Sum_probs=26.9
Q ss_pred CchhhhhhccccccCCCCCccccceecccChHH
Q 024094 98 DFREATCRQYEENTCNRGGYCNFMHLKRISRDL 130 (272)
Q Consensus 98 ~~r~~~c~~~~~g~~~~g~~cn~~h~~~~~r~~ 130 (272)
+-+...|-.|..+.|.+|..|+|+|.+...+..
T Consensus 82 dpK~~vcalF~~~~c~kg~~ckF~h~~ee~r~~ 114 (299)
T COG5252 82 DPKTVVCALFLNKTCAKGDACKFAHGKEEARKT 114 (299)
T ss_pred CchhHHHHHhccCccccCchhhhhcchHHHhhh
Confidence 345678999999999999999999987655443
No 201
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=23.88 E-value=1.3e+02 Score=28.96 Aligned_cols=60 Identities=15% Similarity=0.072 Sum_probs=39.5
Q ss_pred HHHHHHh----ccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 34 DLFEELN----KYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 34 DL~~~F~----kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
||..+|- .+|-|+++.|.-.........+++.|.+.++|.+|+..+--. .-.+..+++..
T Consensus 148 dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~p~a~el~d 211 (413)
T TIGR00387 148 DLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIAA--GIIPAGMEFLD 211 (413)
T ss_pred ChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHhc--CCCcEEEEccC
Confidence 5666653 478899998864333334567788999999999998766432 11355566643
No 202
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.66 E-value=1.4e+02 Score=29.44 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=31.9
Q ss_pred HHHHHHHHhccCCe-EEEEEeeCCCCCceeEEEEEecCHHHHHHHHH
Q 024094 32 YEDLFEELNKYGEI-ESLNICDNLADHMVGNVYVQFREEEQAARALK 77 (272)
Q Consensus 32 ~eDL~~~F~kfG~I-~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~ 77 (272)
.+||...|+.|+.- -+|.+++.. .||-.|.....|..|+-
T Consensus 405 teDll~~f~~yq~kgfdIkWvDdt------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 405 TEDLLKAFETYQNKGFDIKWVDDT------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cHHHHHHHHHhhcCCceeEEeecc------eeEEeecchHHHHHHhh
Confidence 38999999999753 456666543 78999999999999987
No 203
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=23.01 E-value=2.6e+02 Score=19.14 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=30.0
Q ss_pred HHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHH
Q 024094 33 EDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARALKS 78 (272)
Q Consensus 33 eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ 78 (272)
.+|-++|.+.| .|..+.+..... .+..-|.+.+.+.|.++++.
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~~---~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTSE---FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecCC---CCEEEEEECCHHHHHHHHHH
Confidence 57778888877 788888754322 36777777777777777654
No 204
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=22.99 E-value=1.5e+02 Score=30.11 Aligned_cols=61 Identities=13% Similarity=0.006 Sum_probs=40.6
Q ss_pred HHHHHH----hccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 34 DLFEEL----NKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 34 DL~~~F----~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
||..+| ..||-|+++.|.-.........+++.|.+.++|.+|+..+-.. .-.+..+||...
T Consensus 282 dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~~~--g~~psa~ElmD~ 346 (555)
T PLN02805 282 DLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATMLS--GIQVSRVELLDE 346 (555)
T ss_pred cHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHHhC--CCCcEEEEEECH
Confidence 677776 3689999998863322233467899999999999988775421 113556676543
No 205
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=22.56 E-value=77 Score=24.42 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHhccCCeEEEEEeeC--CCCCceeEEEEEecC--HHHHHHHHHHhCCCee-CCeeEEEEee
Q 024094 25 QEHFEDFYEDLFEELNKYGEIESLNICDN--LADHMVGNVYVQFRE--EEQAARALKSLSGRFY-AGRPIIVDFS 94 (272)
Q Consensus 25 ~~~yd~~~eDL~~~F~kfG~I~~i~v~~~--~~~~~~G~afVeF~~--~~dA~~A~~~lnG~~~-~GR~I~ve~s 94 (272)
.+.-..+.+.|.++|++.+.|..+.++.- ..+.+.-+.-|+|.. .+..-.++..+-...+ ++-+|.+-+.
T Consensus 14 ~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~vd~~~~ 88 (108)
T PF14581_consen 14 EEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWPVDFVLL 88 (108)
T ss_pred ccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCceEEEEEc
Confidence 34556788899999999999998877632 234455567778877 2333333333333222 3355554443
No 206
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=22.32 E-value=1.9e+02 Score=25.31 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCCeeCCee---EEEEeecCCC
Q 024094 70 EQAARALKSLSGRFYAGRP---IIVDFSPVTD 98 (272)
Q Consensus 70 ~dA~~A~~~lnG~~~~GR~---I~ve~s~~~~ 98 (272)
|.|-.++-.|...|++=.+ ..|||-..-+
T Consensus 28 E~~F~~yG~lrsvWvArnPPGfAFVEFed~RD 59 (195)
T KOG0107|consen 28 ERAFSKYGPLRSVWVARNPPGFAFVEFEDPRD 59 (195)
T ss_pred HHHHHhcCcceeEEEeecCCCceEEeccCccc
Confidence 3444444445555554333 2455544433
No 207
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=22.17 E-value=2.4e+02 Score=18.45 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=30.1
Q ss_pred HHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHH
Q 024094 33 EDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARAL 76 (272)
Q Consensus 33 eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~ 76 (272)
.+|-..|.+.| .|..+.+.... ...+..-+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~--~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR--GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc--CCcEEEEEEECCHHHHHHHh
Confidence 46667777776 78888776432 34578888999988877765
No 208
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.84 E-value=2.6e+02 Score=27.88 Aligned_cols=50 Identities=22% Similarity=0.173 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeE
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPI 89 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I 89 (272)
...-+..+-.+||+|..++|-.. -.|.-.+.+.|.+|+. -+|..|.+|+.
T Consensus 48 ~h~~~~~ls~~yGpi~tl~lG~~--------~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 48 PHRSFRKLSKKYGPVFTLRLGSV--------PVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred hhHHHHHHHHHhCCeEEEEecCc--------eEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 44455666679999998877532 2677788899999988 58999999997
No 209
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=21.73 E-value=56 Score=32.98 Aligned_cols=38 Identities=26% Similarity=0.468 Sum_probs=34.1
Q ss_pred CceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 57 HMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 57 ~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
++..+++++|++...+.+|+..++|..+.+..+.|...
T Consensus 61 ~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~ 98 (534)
T KOG2187|consen 61 KMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLG 98 (534)
T ss_pred CCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhc
Confidence 44579999999999999999999999999998888775
No 210
>PF02580 Tyr_Deacylase: D-Tyr-tRNA(Tyr) deacylase; InterPro: IPR003732 This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterisation with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0019478 D-amino acid catabolic process, 0005737 cytoplasm; PDB: 3LMU_F 3LMT_B 3KNF_B 3KOC_C 3KNP_D 3KO9_F 3KO3_B 3KO5_C 3KOB_D 3LMV_E ....
Probab=21.63 E-value=2.8e+02 Score=23.17 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=27.9
Q ss_pred CCCChHHHhHHHHHHHHHHHHHH------hccCCeEEEEEeeC
Q 024094 17 NPLDPRKIQEHFEDFYEDLFEEL------NKYGEIESLNICDN 53 (272)
Q Consensus 17 ~~~~~~~~~~~yd~~~eDL~~~F------~kfG~I~~i~v~~~ 53 (272)
..+.+++..+-|+.|.+.|+... ..||.-..|.+..+
T Consensus 94 ~a~~~~~a~~ly~~f~~~l~~~~~~~V~~G~FGa~M~V~l~Nd 136 (145)
T PF02580_consen 94 NAAPPEEAEELYERFVEKLREEYKPKVKTGVFGADMQVSLVND 136 (145)
T ss_dssp TB--HHHHHHHHHHHHHHHHHHSTSCEEE--TTS-EEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCCceeECccCCeeEEEEEeC
Confidence 34578888999999999999998 68999999998864
No 211
>cd00344 FBP_aldolase_I Fructose-bisphosphate aldolase class I. Fructose-1,6-bisphosphate aldolase is an enzyme of the glycolytic and gluconeogenic pathways found in vertebrates, plants, and bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=21.14 E-value=3.2e+02 Score=26.07 Aligned_cols=87 Identities=18% Similarity=0.113 Sum_probs=50.0
Q ss_pred CCCCCCCCCCCCChHHHhHHHHHHHHHHHHHHhcc--------CCeEEEEEeeCC---------------C------CCc
Q 024094 8 ITPGVDAQGNPLDPRKIQEHFEDFYEDLFEELNKY--------GEIESLNICDNL---------------A------DHM 58 (272)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~yd~~~eDL~~~F~kf--------G~I~~i~v~~~~---------------~------~~~ 58 (272)
|.|.+.|.+.|=....|..-++.++.-|...|... |.|+...|+.+. + .++
T Consensus 171 LVPIVEPEVlidg~h~i~~~~~vt~~vl~~~~~~L~~~~V~leg~lLKpnmv~~G~~~~~~~~~~~va~~t~~~l~~~vP 250 (328)
T cd00344 171 IVPIVEPEILPDGDHDLKRCQYVTEKVLAAVYKALSDHHIYLEGTLLKPNMVTPGHACTQKFSHEEIAMATVTALRRTVP 250 (328)
T ss_pred CCceecceeCCCCCccHHHHHHHHHHHHHHHHHHhhhcCCcccCeEEEccccccCccCCCcCCHHHHHHhhHHHHHhhCC
Confidence 44444444433334455555556666666555532 566777666541 1 133
Q ss_pred eeEEEEEe----cCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 59 VGNVYVQF----REEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 59 ~G~afVeF----~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
....=|.| .++++|..=+.+||+.. .-+++.+.||-
T Consensus 251 ~aVpgVvfLSGGqS~eeAt~~Lna~n~~~-~~~pW~lsfSf 290 (328)
T cd00344 251 PAVTGVTFLSGGQSEEEASINLNAINKCP-LLKPWALTFSY 290 (328)
T ss_pred CcCCeEEeccCCCCHHHHHHHHHHhcCCC-CCCCceEEech
Confidence 33334444 45788988899999865 34588888863
No 212
>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription]
Probab=21.00 E-value=2.3e+02 Score=27.14 Aligned_cols=76 Identities=24% Similarity=0.257 Sum_probs=50.2
Q ss_pred CCCChHHHhHHHHHHHHHHH--HHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC------CeeCCee
Q 024094 17 NPLDPRKIQEHFEDFYEDLF--EELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG------RFYAGRP 88 (272)
Q Consensus 17 ~~~~~~~~~~~yd~~~eDL~--~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG------~~~~GR~ 88 (272)
.++.+.++++-|..|.+-+- +.|..-|.++++-. .+.+-|+ -.++|...+.++.++|+..|.- ..+++++
T Consensus 138 l~lne~eVqe~f~~fke~~~~~esl~~~g~~~s~F~-~p~~~HL-Tvgm~~L~~dd~vq~a~e~les~~~e~~~~~~~kp 215 (345)
T KOG2814|consen 138 LPLNEHEVQEGFLAFKELKPFIESLLDGGIDKSLFQ-GPGTFHL-TVGMLKLLNDDDVQKALEILESTFQEIRIDVGEKP 215 (345)
T ss_pred hhcchHHHHHHHHHHHhhhhhHHHhhccchhhcccc-CCceeeE-EEEEEEecChHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 45677888998888884333 33345555544332 2222232 3778888899999999998876 3467888
Q ss_pred EEEEee
Q 024094 89 IIVDFS 94 (272)
Q Consensus 89 I~ve~s 94 (272)
|.+.+-
T Consensus 216 ~~i~lk 221 (345)
T KOG2814|consen 216 LFIDLK 221 (345)
T ss_pred eeeecc
Confidence 888864
No 213
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.18 E-value=3.9e+02 Score=20.19 Aligned_cols=49 Identities=6% Similarity=0.129 Sum_probs=26.7
Q ss_pred HHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecC--HHHHHHHHHHhC
Q 024094 32 YEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFRE--EEQAARALKSLS 80 (272)
Q Consensus 32 ~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~--~~dA~~A~~~ln 80 (272)
.-+|...|+.+| .|..|.--........=.-||+|+- .....+|+..|.
T Consensus 28 L~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 28 LAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHH
Confidence 457888899998 4444433211111112255788874 334456666664
No 214
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=20.07 E-value=47 Score=31.75 Aligned_cols=47 Identities=28% Similarity=0.356 Sum_probs=34.2
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGR 82 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~ 82 (272)
-.|+..+.+.|.|..-.|.... ..|.+||-+-.+++|++|++.|.+.
T Consensus 276 p~iF~~i~~~G~v~~~EM~rtF---NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRTF---NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHHh---cCccceEEEEcHHHHHHHHHHHHhc
Confidence 3566667777776554444321 2488899999999999999999886
Done!