Query 024094
Match_columns 272
No_of_seqs 249 out of 1512
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 18:07:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jmt_A Splicing factor U2AF 35 99.9 2E-22 6.8E-27 157.7 6.1 95 1-95 9-104 (104)
2 3v4m_A Splicing factor U2AF 65 99.8 1.1E-19 3.7E-24 142.4 8.0 86 16-101 11-101 (105)
3 3pgw_S U1-70K; protein-RNA com 99.8 1E-18 3.6E-23 168.0 12.5 71 28-98 112-183 (437)
4 3s6e_A RNA-binding protein 39; 99.8 5E-19 1.7E-23 141.0 5.0 83 16-101 13-97 (114)
5 3ue2_A Poly(U)-binding-splicin 99.7 1.5E-18 5.2E-23 138.9 6.3 83 16-101 26-113 (118)
6 2pe8_A Splicing factor 45; RRM 99.7 5E-18 1.7E-22 133.0 6.8 83 16-101 14-98 (105)
7 2dit_A HIV TAT specific factor 99.6 7.4E-16 2.5E-20 120.9 9.9 78 16-96 21-101 (112)
8 4fxv_A ELAV-like protein 1; RN 99.6 1.9E-15 6.5E-20 116.5 8.1 69 27-95 28-97 (99)
9 3s8s_A Histone-lysine N-methyl 99.6 3.8E-15 1.3E-19 117.1 8.4 70 29-98 17-87 (110)
10 3ns6_A Eukaryotic translation 99.6 8.3E-15 2.8E-19 112.7 8.5 70 26-95 20-91 (100)
11 3ulh_A THO complex subunit 4; 99.5 1.8E-14 6E-19 111.2 8.5 69 27-95 38-106 (107)
12 3bs9_A Nucleolysin TIA-1 isofo 99.5 2.7E-14 9.2E-19 105.9 8.5 67 30-96 18-85 (87)
13 2ywk_A Putative RNA-binding pr 99.5 1.9E-14 6.4E-19 108.6 7.7 68 28-95 26-93 (95)
14 2do4_A Squamous cell carcinoma 99.5 2.3E-14 8E-19 109.3 8.3 70 28-97 27-96 (100)
15 3md1_A Nuclear and cytoplasmic 99.5 3.4E-14 1.2E-18 104.4 8.8 68 30-97 13-81 (83)
16 3dxb_A Thioredoxin N-terminall 99.5 6.6E-15 2.2E-19 128.0 5.7 83 16-101 130-217 (222)
17 3mdf_A Peptidyl-prolyl CIS-tra 99.5 2.5E-14 8.5E-19 105.6 7.0 65 30-94 19-84 (85)
18 2krb_A Eukaryotic translation 99.5 1.7E-14 5.9E-19 106.2 5.9 64 27-91 16-80 (81)
19 1whw_A Hypothetical protein ri 99.5 3E-14 1E-18 108.4 7.3 70 29-98 19-89 (99)
20 2wbr_A GW182, gawky, LD47780P; 99.5 1.2E-14 4.1E-19 110.7 4.9 63 29-96 18-80 (89)
21 2do0_A HnRNP M, heterogeneous 99.5 5.3E-14 1.8E-18 109.7 8.7 70 28-97 25-94 (114)
22 2dnz_A Probable RNA-binding pr 99.5 3.4E-14 1.2E-18 107.1 7.2 68 30-97 17-85 (95)
23 2dgo_A Cytotoxic granule-assoc 99.5 5.7E-14 2E-18 109.8 8.8 71 28-98 25-96 (115)
24 4f25_A Polyadenylate-binding p 99.5 3.7E-14 1.3E-18 111.7 7.7 69 29-98 16-84 (115)
25 2d9p_A Polyadenylate-binding p 99.5 3.3E-14 1.1E-18 109.1 7.1 70 28-98 25-94 (103)
26 2dnh_A Bruno-like 5, RNA bindi 99.5 4.2E-14 1.4E-18 108.7 7.7 71 28-98 25-98 (105)
27 2cqc_A Arginine/serine-rich sp 99.5 9.9E-14 3.4E-18 104.4 9.6 67 29-95 26-93 (95)
28 2cq0_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 108.9 7.2 71 28-98 25-96 (103)
29 2fy1_A RNA-binding motif prote 99.5 2.9E-14 1E-18 112.6 6.5 70 29-98 18-87 (116)
30 2e5h_A Zinc finger CCHC-type a 99.5 3.6E-14 1.2E-18 106.8 6.6 67 28-94 26-93 (94)
31 2x1f_A MRNA 3'-END-processing 99.5 5.4E-14 1.9E-18 106.6 7.6 70 30-99 14-84 (96)
32 2cpz_A CUG triplet repeat RNA- 99.5 4.5E-14 1.5E-18 110.5 7.2 71 27-97 34-105 (115)
33 2nlw_A Eukaryotic translation 99.5 3.5E-14 1.2E-18 110.0 6.4 69 27-96 30-99 (105)
34 1x5u_A Splicing factor 3B subu 99.5 3.6E-14 1.2E-18 109.1 6.3 71 27-97 24-95 (105)
35 3p5t_L Cleavage and polyadenyl 99.5 1.7E-14 5.8E-19 108.5 4.2 69 29-97 12-83 (90)
36 1x4c_A Splicing factor, argini 99.5 9E-14 3.1E-18 108.0 8.4 62 28-95 25-91 (108)
37 1x5t_A Splicing factor 3B subu 99.5 3E-14 1E-18 107.6 5.5 69 30-98 17-87 (96)
38 2lxi_A RNA-binding protein 10; 99.5 1E-14 3.5E-19 110.5 2.8 69 29-97 12-83 (91)
39 2cq3_A RNA-binding protein 9; 99.5 9.5E-14 3.2E-18 106.5 8.2 70 28-98 25-94 (103)
40 1p27_B RNA-binding protein 8A; 99.5 7.2E-14 2.5E-18 107.6 7.5 69 28-96 33-102 (106)
41 1x5s_A Cold-inducible RNA-bind 99.5 3.5E-14 1.2E-18 108.6 5.6 70 28-97 22-92 (102)
42 2cph_A RNA binding motif prote 99.5 6.4E-14 2.2E-18 107.9 7.1 71 28-98 25-98 (107)
43 2cqb_A Peptidyl-prolyl CIS-tra 99.5 3.5E-14 1.2E-18 108.6 5.2 70 29-98 23-93 (102)
44 2lkz_A RNA-binding protein 5; 99.5 2.2E-14 7.7E-19 110.1 4.1 70 27-96 18-94 (95)
45 2la6_A RNA-binding protein FUS 99.5 6.6E-14 2.2E-18 106.8 6.7 67 29-95 24-99 (99)
46 2dgv_A HnRNP M, heterogeneous 99.5 7.9E-14 2.7E-18 104.5 6.8 68 29-97 19-86 (92)
47 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.1E-13 3.7E-18 106.1 7.7 69 28-97 25-93 (103)
48 2ek1_A RNA-binding protein 12; 99.5 3.6E-14 1.2E-18 107.0 4.8 68 28-95 25-93 (95)
49 4a8x_A RNA-binding protein wit 99.5 7.5E-14 2.6E-18 103.5 6.4 69 29-97 15-85 (88)
50 1u6f_A Tcubp1, RNA-binding pro 99.5 9.5E-14 3.2E-18 112.0 7.6 74 27-100 51-125 (139)
51 2cpf_A RNA binding motif prote 99.5 8.6E-14 3E-18 105.6 6.9 68 30-97 17-88 (98)
52 2dnm_A SRP46 splicing factor; 99.5 3.9E-14 1.3E-18 108.6 5.0 69 29-97 24-93 (103)
53 2cpi_A CCR4-NOT transcription 99.5 6.5E-14 2.2E-18 109.4 6.3 72 27-98 24-102 (111)
54 2kt5_A RNA and export factor-b 99.5 8.1E-14 2.8E-18 110.6 6.8 72 27-98 44-115 (124)
55 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.6E-13 5.5E-18 113.1 8.7 70 27-96 48-118 (156)
56 1p1t_A Cleavage stimulation fa 99.5 8.3E-14 2.9E-18 106.7 6.4 72 29-100 19-91 (104)
57 2dgs_A DAZ-associated protein 99.5 1E-13 3.6E-18 105.5 6.8 68 29-97 21-89 (99)
58 3beg_B Splicing factor, argini 99.5 2.1E-14 7.3E-19 113.1 3.0 61 28-94 26-86 (115)
59 2a3j_A U1 small nuclear ribonu 99.4 1.6E-13 5.6E-18 110.8 8.1 67 30-98 45-111 (127)
60 2dhg_A TRNA selenocysteine ass 99.4 8.2E-14 2.8E-18 106.9 6.1 68 30-97 21-90 (104)
61 1x4h_A RNA-binding protein 28; 99.4 1.2E-13 4.1E-18 107.0 7.0 70 28-97 25-101 (111)
62 3ucg_A Polyadenylate-binding p 99.4 1.6E-13 5.3E-18 102.1 7.4 67 29-96 17-84 (89)
63 2dgx_A KIAA0430 protein; RRM d 99.4 1.2E-13 4E-18 105.2 6.8 61 35-97 30-90 (96)
64 1s79_A Lupus LA protein; RRM, 99.4 7.5E-14 2.6E-18 108.5 5.8 67 28-95 21-87 (103)
65 1oo0_B CG8781-PA, drosophila Y 99.4 1.4E-13 4.6E-18 106.8 7.2 70 27-96 35-105 (110)
66 3ex7_B RNA-binding protein 8A; 99.4 8.2E-14 2.8E-18 110.6 5.9 70 27-96 31-101 (126)
67 2kxn_B Transformer-2 protein h 99.4 8.9E-14 3.1E-18 112.1 6.2 71 27-97 55-126 (129)
68 2cqp_A RNA-binding protein 12; 99.4 7E-14 2.4E-18 106.1 5.1 69 28-96 25-94 (98)
69 1x4a_A Splicing factor, argini 99.4 1.8E-13 6.3E-18 106.0 7.4 69 27-97 31-99 (109)
70 2jrs_A RNA-binding protein 39; 99.4 3.3E-13 1.1E-17 105.2 8.7 70 27-96 35-105 (108)
71 2khc_A Testis-specific RNP-typ 99.4 9E-14 3.1E-18 109.1 5.3 68 27-94 49-117 (118)
72 3n9u_C Cleavage and polyadenyl 99.4 2.3E-13 7.8E-18 113.4 8.0 72 26-97 63-137 (156)
73 2cpe_A RNA-binding protein EWS 99.4 1.2E-13 4.3E-18 107.5 6.0 71 27-97 24-103 (113)
74 2div_A TRNA selenocysteine ass 99.4 1.6E-13 5.6E-18 104.3 6.3 68 30-97 21-94 (99)
75 2dgp_A Bruno-like 4, RNA bindi 99.4 1.3E-13 4.6E-18 106.0 5.8 71 28-98 23-97 (106)
76 2jwn_A Embryonic polyadenylate 99.4 3.4E-13 1.1E-17 106.7 8.2 69 27-96 45-114 (124)
77 2dng_A Eukaryotic translation 99.4 2.9E-13 9.9E-18 103.9 7.5 68 28-97 25-93 (103)
78 1whx_A Hypothetical protein ri 99.4 1.6E-13 5.5E-18 107.5 5.7 67 28-99 20-86 (111)
79 2cqd_A RNA-binding region cont 99.4 1.9E-13 6.6E-18 107.0 6.2 69 28-97 27-96 (116)
80 2err_A Ataxin-2-binding protei 99.4 1.3E-13 4.4E-18 107.5 5.1 70 27-97 38-107 (109)
81 1sjq_A Polypyrimidine tract-bi 99.4 1.2E-13 4.2E-18 108.3 4.9 68 28-100 26-95 (105)
82 2cq4_A RNA binding motif prote 99.4 1.5E-13 5.1E-18 107.4 5.3 69 27-96 34-103 (114)
83 1wi8_A EIF-4B, eukaryotic tran 99.4 2.1E-13 7.3E-18 104.8 6.1 69 28-98 25-95 (104)
84 2dgw_A Probable RNA-binding pr 99.4 3.4E-13 1.2E-17 101.1 7.1 68 28-97 20-87 (91)
85 2mss_A Protein (musashi1); RNA 99.4 8E-14 2.7E-18 100.7 3.5 64 30-94 11-75 (75)
86 3r27_A HnRNP L, heterogeneous 99.4 2.8E-13 9.4E-18 105.4 6.5 66 28-98 31-98 (100)
87 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4.5E-13 1.5E-17 111.7 8.2 70 27-96 81-151 (165)
88 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 2.5E-13 8.7E-18 109.0 6.4 68 27-94 72-140 (140)
89 1wg5_A Heterogeneous nuclear r 99.4 2E-13 6.9E-18 105.4 5.5 72 27-99 24-96 (104)
90 2cq2_A Hypothetical protein LO 99.4 1.9E-13 6.6E-18 108.7 5.2 70 27-101 36-110 (114)
91 1x5o_A RNA binding motif, sing 99.4 4.3E-13 1.5E-17 104.6 7.2 70 27-96 34-111 (114)
92 2db1_A Heterogeneous nuclear r 99.4 2E-13 6.7E-18 108.1 5.3 72 26-98 25-99 (118)
93 2f3j_A RNA and export factor b 99.4 1.7E-13 5.8E-18 116.3 5.2 73 27-99 97-169 (177)
94 2ki2_A SS-DNA binding protein 99.4 6.8E-14 2.3E-18 104.6 2.4 70 29-99 12-82 (90)
95 3s7r_A Heterogeneous nuclear r 99.4 5.9E-13 2E-17 98.8 7.3 66 28-94 21-87 (87)
96 1x4d_A Matrin 3; structural ge 99.4 2.1E-13 7.1E-18 106.3 4.9 65 27-96 24-91 (102)
97 2dh8_A DAZ-associated protein 99.4 3.1E-13 1.1E-17 103.9 5.8 70 28-98 26-96 (105)
98 2kn4_A Immunoglobulin G-bindin 99.4 3.5E-13 1.2E-17 110.8 6.5 71 27-97 79-150 (158)
99 1x5p_A Negative elongation fac 99.4 1.1E-12 3.8E-17 99.6 8.7 66 28-98 23-88 (97)
100 2cq1_A PTB-like protein L; RRM 99.4 4.6E-13 1.6E-17 103.9 6.5 67 28-99 25-93 (101)
101 1why_A Hypothetical protein ri 99.4 4.2E-13 1.5E-17 101.8 5.9 64 29-97 28-93 (97)
102 2dnn_A RNA-binding protein 12; 99.4 2.5E-13 8.4E-18 106.9 4.5 74 26-101 24-97 (109)
103 1wel_A RNA-binding protein 12; 99.4 1.4E-13 4.6E-18 109.6 3.1 72 27-99 34-106 (124)
104 2ad9_A Polypyrimidine tract-bi 99.4 2.7E-13 9.4E-18 108.6 4.8 69 27-100 40-110 (119)
105 1wez_A HnRNP H', FTP-3, hetero 99.4 2.5E-13 8.5E-18 105.1 4.4 70 26-97 23-92 (102)
106 2dnq_A RNA-binding protein 4B; 99.4 5.7E-13 1.9E-17 99.8 6.1 62 30-98 20-81 (90)
107 2jvr_A Nucleolar protein 3; RN 99.4 3.1E-13 1.1E-17 106.8 4.5 67 27-96 37-104 (111)
108 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.5E-13 5.2E-18 105.3 2.7 68 27-96 28-97 (100)
109 3zzy_A Polypyrimidine tract-bi 99.4 8.9E-13 3E-17 107.2 7.3 68 27-98 37-107 (130)
110 2cpy_A RNA-binding protein 12; 99.4 2.6E-13 9E-18 106.5 3.9 71 27-98 24-95 (114)
111 2fc9_A NCL protein; structure 99.4 6.3E-13 2.1E-17 101.5 5.8 67 28-97 25-91 (101)
112 2dgu_A Heterogeneous nuclear r 99.4 9.4E-13 3.2E-17 101.1 6.8 63 29-98 22-84 (103)
113 2hvz_A Splicing factor, argini 99.4 2.8E-13 9.7E-18 103.4 3.9 65 30-98 12-76 (101)
114 3q2s_C Cleavage and polyadenyl 99.4 4.5E-13 1.5E-17 118.1 5.7 72 26-97 76-150 (229)
115 1x4e_A RNA binding motif, sing 99.4 1E-13 3.5E-18 102.5 1.3 66 30-95 17-83 (85)
116 2dgt_A RNA-binding protein 30; 99.4 8.7E-13 3E-17 99.1 6.4 62 29-97 21-82 (92)
117 2dnp_A RNA-binding protein 14; 99.4 8.3E-13 2.8E-17 98.9 6.2 62 29-97 20-81 (90)
118 2lea_A Serine/arginine-rich sp 99.4 3.4E-13 1.2E-17 109.4 4.2 71 27-97 56-127 (135)
119 2jvo_A Nucleolar protein 3; nu 99.4 7.8E-13 2.7E-17 103.2 6.1 64 27-97 40-103 (108)
120 2ytc_A PRE-mRNA-splicing facto 99.4 8.7E-13 3E-17 97.3 6.0 61 29-94 23-84 (85)
121 1sjr_A Polypyrimidine tract-bi 99.4 8.2E-13 2.8E-17 111.4 6.6 69 27-98 55-125 (164)
122 2bz2_A Negative elongation fac 99.4 4.7E-13 1.6E-17 106.8 4.8 67 28-99 47-113 (121)
123 1x4g_A Nucleolysin TIAR; struc 99.3 1.9E-12 6.6E-17 100.3 8.1 65 28-97 35-99 (109)
124 3md3_A Nuclear and cytoplasmic 99.3 1.9E-12 6.7E-17 105.2 8.5 68 28-95 97-165 (166)
125 2hgl_A HNRPF protein, heteroge 99.3 3.9E-13 1.3E-17 109.8 4.3 71 26-97 52-125 (136)
126 1x4b_A Heterogeneous nuclear r 99.3 7.3E-13 2.5E-17 103.7 5.7 70 27-97 36-106 (116)
127 2dis_A Unnamed protein product 99.3 7.5E-13 2.6E-17 102.3 5.7 70 29-98 19-93 (109)
128 2xnq_A Nuclear polyadenylated 99.3 3.1E-12 1.1E-16 97.7 9.0 61 29-96 34-94 (97)
129 1wex_A Hypothetical protein (r 99.3 5.8E-13 2E-17 103.8 5.0 67 28-99 25-93 (104)
130 3lqv_A PRE-mRNA branch site pr 99.3 9.3E-13 3.2E-17 102.8 6.2 66 29-96 19-84 (115)
131 2e5i_A Heterogeneous nuclear r 99.3 1.1E-12 3.7E-17 105.8 6.6 67 27-98 34-103 (124)
132 1nu4_A U1A RNA binding domain; 99.3 4E-13 1.4E-17 101.6 3.9 64 33-98 27-90 (97)
133 2la4_A Nuclear and cytoplasmic 99.3 5.5E-13 1.9E-17 101.8 4.6 64 28-96 37-100 (101)
134 2cqg_A TDP-43, TAR DNA-binding 99.3 2.3E-12 7.8E-17 98.7 7.8 68 28-97 25-93 (103)
135 2cpj_A Non-POU domain-containi 99.3 7.6E-13 2.6E-17 100.8 4.9 64 29-97 26-89 (99)
136 2rs2_A Musashi-1, RNA-binding 99.3 1.4E-12 4.7E-17 101.7 6.5 70 27-97 34-104 (109)
137 1uaw_A Mouse-musashi-1; RNP-ty 99.3 2.8E-13 9.6E-18 98.0 2.3 64 30-94 12-76 (77)
138 2g4b_A Splicing factor U2AF 65 99.3 1.9E-12 6.5E-17 106.4 7.3 67 29-95 105-172 (172)
139 2kvi_A Nuclear polyadenylated 99.3 8.3E-13 2.8E-17 100.3 4.6 62 29-97 22-83 (96)
140 2m2b_A RNA-binding protein 10; 99.3 2.1E-13 7.3E-18 109.5 1.3 71 26-97 31-108 (131)
141 2e5j_A Methenyltetrahydrofolat 99.3 8.3E-13 2.8E-17 100.3 4.4 67 27-97 28-94 (97)
142 2cpx_A Hypothetical protein FL 99.3 9.2E-13 3.1E-17 102.7 4.5 69 27-98 34-106 (115)
143 2cpd_A Apobec-1 stimulating pr 99.3 2.7E-12 9.4E-17 97.7 7.1 63 28-97 25-89 (99)
144 2qfj_A FBP-interacting repress 99.3 2.9E-12 1E-16 109.0 7.8 70 28-97 135-205 (216)
145 1wf1_A RNA-binding protein RAL 99.3 2.4E-12 8.2E-17 100.0 6.6 63 27-96 36-99 (110)
146 2d9o_A DNAJ (HSP40) homolog, s 99.3 3.7E-12 1.3E-16 98.8 7.6 63 30-98 29-91 (100)
147 1fxl_A Paraneoplastic encephal 99.3 5.7E-12 1.9E-16 102.5 9.1 69 30-98 14-83 (167)
148 1fjc_A Nucleolin RBD2, protein 99.3 8.2E-13 2.8E-17 99.8 3.5 66 27-96 25-90 (96)
149 3nmr_A Cugbp ELAV-like family 99.3 3.7E-12 1.3E-16 104.6 7.7 68 27-94 104-174 (175)
150 3md3_A Nuclear and cytoplasmic 99.3 5.7E-12 1.9E-16 102.4 8.6 69 29-97 11-79 (166)
151 2dha_A FLJ20171 protein; RRM d 99.3 7.1E-13 2.4E-17 106.5 3.0 75 26-101 31-109 (123)
152 1fj7_A Nucleolin RBD1, protein 99.3 1.7E-13 5.8E-18 104.7 -0.6 70 27-97 26-95 (101)
153 4f02_A Polyadenylate-binding p 99.3 3.4E-12 1.2E-16 110.1 7.4 69 27-96 112-180 (213)
154 2diu_A KIAA0430 protein; struc 99.3 3.8E-12 1.3E-16 97.9 6.8 60 29-97 24-84 (96)
155 1wg1_A KIAA1579 protein, homol 99.3 1.7E-12 5.8E-17 97.0 4.7 64 30-99 17-80 (88)
156 2lcw_A RNA-binding protein FUS 99.0 2.5E-13 8.5E-18 106.6 0.0 72 27-98 16-96 (116)
157 2lmi_A GRSF-1, G-rich sequence 99.3 4E-13 1.4E-17 104.2 1.0 71 27-98 20-93 (107)
158 2i2y_A Fusion protein consists 99.3 2E-12 7E-17 105.7 5.0 66 27-96 82-147 (150)
159 2hgn_A Heterogeneous nuclear r 99.3 4.9E-13 1.7E-17 109.7 1.2 72 26-99 54-125 (139)
160 1b7f_A Protein (SXL-lethal pro 99.3 5.5E-12 1.9E-16 103.0 7.4 66 29-94 100-168 (168)
161 2e44_A Insulin-like growth fac 99.3 4.8E-12 1.6E-16 95.5 6.6 68 27-97 24-92 (96)
162 1iqt_A AUF1, heterogeneous nuc 99.3 6.4E-13 2.2E-17 95.8 1.5 64 30-94 11-75 (75)
163 3egn_A RNA-binding protein 40; 99.3 1.9E-12 6.5E-17 105.1 4.4 71 27-97 54-130 (143)
164 1x4f_A Matrin 3; structural ge 99.3 8.8E-13 3E-17 104.5 2.1 66 27-97 34-102 (112)
165 2cqh_A IGF-II mRNA-binding pro 99.3 2.9E-12 9.8E-17 96.3 4.7 62 30-97 20-83 (93)
166 2xs2_A Deleted in azoospermia- 99.3 2.9E-12 1E-16 97.9 4.8 66 29-96 20-85 (102)
167 2yh0_A Splicing factor U2AF 65 99.3 6.3E-12 2.2E-16 105.5 7.3 71 27-97 123-194 (198)
168 1b7f_A Protein (SXL-lethal pro 99.3 7.3E-12 2.5E-16 102.3 7.4 69 30-98 15-84 (168)
169 2e5g_A U6 snRNA-specific termi 99.3 5.1E-12 1.7E-16 95.4 5.4 65 29-98 19-83 (94)
170 2cjk_A Nuclear polyadenylated 99.3 4.6E-12 1.6E-16 103.6 5.4 69 27-96 96-165 (167)
171 1fxl_A Paraneoplastic encephal 99.2 1.2E-11 4E-16 100.6 7.5 66 29-94 99-167 (167)
172 4f02_A Polyadenylate-binding p 99.2 1.5E-11 5.2E-16 106.0 8.6 72 27-98 24-96 (213)
173 2fc8_A NCL protein; structure 99.2 1.2E-11 4.1E-16 94.3 6.8 67 28-97 25-92 (102)
174 2voo_A Lupus LA protein; RNA-b 99.2 2.2E-11 7.4E-16 104.6 7.6 68 27-95 118-185 (193)
175 3tyt_A Heterogeneous nuclear r 99.2 1.6E-11 5.3E-16 106.3 6.7 63 30-96 17-79 (205)
176 1l3k_A Heterogeneous nuclear r 99.2 2.6E-11 8.8E-16 101.6 7.8 71 27-98 113-184 (196)
177 3smz_A Protein raver-1, ribonu 99.2 4E-11 1.4E-15 106.9 9.3 70 31-100 198-267 (284)
178 3u1l_A PRE-mRNA-splicing facto 99.2 2.5E-11 8.6E-16 108.1 7.8 64 29-97 154-229 (240)
179 2j8a_A Histone-lysine N-methyl 99.2 9.4E-12 3.2E-16 101.1 4.5 71 28-98 16-97 (136)
180 2hgm_A HNRPF protein, heteroge 99.2 7.3E-12 2.5E-16 101.1 3.4 69 26-96 50-120 (126)
181 2qfj_A FBP-interacting repress 99.2 2.8E-11 9.4E-16 102.9 7.1 72 27-98 37-109 (216)
182 1fje_B Nucleolin RBD12, protei 99.2 1.9E-11 6.6E-16 100.9 5.7 65 28-96 109-173 (175)
183 2ghp_A U4/U6 snRNA-associated 99.2 6.2E-11 2.1E-15 106.1 8.9 69 28-97 220-291 (292)
184 1l3k_A Heterogeneous nuclear r 99.2 5.7E-11 1.9E-15 99.5 8.0 69 27-96 22-91 (196)
185 2hzc_A Splicing factor U2AF 65 99.2 3.3E-11 1.1E-15 89.0 5.5 59 29-93 17-86 (87)
186 3pgw_A U1-A; protein-RNA compl 99.1 6.8E-11 2.3E-15 105.3 7.8 62 34-97 29-90 (282)
187 3pgw_A U1-A; protein-RNA compl 99.1 8.9E-11 3E-15 104.5 7.7 65 27-95 216-281 (282)
188 3d2w_A TAR DNA-binding protein 99.1 8.6E-11 2.9E-15 88.4 5.8 62 27-96 20-83 (89)
189 2dnr_A Synaptojanin-1; RRM dom 99.1 2E-10 6.9E-15 87.5 7.5 60 29-96 26-85 (91)
190 2dnl_A Cytoplasmic polyadenyla 99.1 3.9E-11 1.3E-15 93.9 3.4 66 28-96 18-87 (114)
191 3nmr_A Cugbp ELAV-like family 99.1 1.7E-10 5.7E-15 94.6 6.6 68 29-96 14-87 (175)
192 2adc_A Polypyrimidine tract-bi 99.1 1.1E-10 3.8E-15 101.6 5.7 65 29-97 46-110 (229)
193 3smz_A Protein raver-1, ribonu 99.1 2.9E-10 9.9E-15 101.3 8.2 69 29-97 106-175 (284)
194 3sde_A Paraspeckle component 1 99.0 2.7E-10 9.1E-15 101.2 7.3 69 29-97 107-179 (261)
195 1qm9_A Polypyrimidine tract-bi 99.0 1.4E-10 4.7E-15 97.9 4.8 66 28-97 130-197 (198)
196 2ghp_A U4/U6 snRNA-associated 99.0 2.8E-10 9.7E-15 101.7 6.0 71 28-98 127-198 (292)
197 2adc_A Polypyrimidine tract-bi 99.0 3.3E-10 1.1E-14 98.6 6.2 67 27-97 160-228 (229)
198 1qm9_A Polypyrimidine tract-bi 99.0 2.5E-10 8.6E-15 96.3 5.1 63 31-97 17-79 (198)
199 2cjk_A Nuclear polyadenylated 99.0 3.1E-10 1.1E-14 92.6 4.9 66 29-96 14-80 (167)
200 3tht_A Alkylated DNA repair pr 99.0 4E-10 1.4E-14 105.3 6.0 65 27-96 29-98 (345)
201 1wf0_A TDP-43, TAR DNA-binding 99.0 1.2E-10 3.9E-15 86.7 1.4 62 30-97 17-78 (88)
202 3tyt_A Heterogeneous nuclear r 99.0 5.8E-10 2E-14 96.3 5.7 67 27-94 132-204 (205)
203 3sde_A Paraspeckle component 1 99.0 6E-10 2.1E-14 98.9 6.0 66 26-96 30-95 (261)
204 1fje_B Nucleolin RBD12, protei 99.0 6.9E-11 2.3E-15 97.6 -0.2 69 28-97 23-91 (175)
205 1ufw_A Synaptojanin 2; RNP dom 98.9 2.4E-09 8.3E-14 82.1 6.3 58 29-94 35-92 (95)
206 2g4b_A Splicing factor U2AF 65 98.8 4.4E-09 1.5E-13 86.1 6.2 63 29-97 15-88 (172)
207 2yh0_A Splicing factor U2AF 65 98.8 4.5E-09 1.5E-13 88.0 5.4 62 29-96 15-87 (198)
208 1owx_A Lupus LA protein, SS-B, 98.5 2.1E-07 7.1E-12 74.5 7.4 62 30-96 31-95 (121)
209 2l9w_A U4/U6 snRNA-associated- 97.7 6.1E-05 2.1E-09 59.1 6.3 55 34-93 37-96 (117)
210 1wey_A Calcipressin 1; structu 97.3 0.00042 1.4E-08 53.7 6.5 63 31-98 23-85 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.1 0.0012 4E-08 52.5 7.0 57 31-93 36-93 (119)
212 3p3d_A Nucleoporin 53; structu 96.1 0.0075 2.6E-07 48.6 5.4 64 31-95 19-97 (132)
213 2kn4_A Immunoglobulin G-bindin 95.9 0.0067 2.3E-07 48.8 4.3 35 47-82 2-36 (158)
214 2i2y_A Fusion protein consists 95.8 0.0031 1.1E-07 50.6 1.9 39 57-96 11-50 (150)
215 1whv_A Poly(A)-specific ribonu 95.0 0.033 1.1E-06 42.6 5.1 41 33-80 30-70 (100)
216 3ctr_A Poly(A)-specific ribonu 93.8 0.053 1.8E-06 41.6 3.8 41 33-80 20-60 (101)
217 1uw4_A UPF3X; nonsense mediate 90.3 1.7 5.7E-05 32.5 8.3 65 33-97 16-88 (91)
218 3pq1_A Poly(A) RNA polymerase; 88.0 0.22 7.6E-06 47.9 2.5 44 30-77 64-107 (464)
219 3pgw_S U1-70K; protein-RNA com 87.7 0.9 3.1E-05 43.0 6.5 12 31-42 78-89 (437)
220 2dhx_A Poly (ADP-ribose) polym 76.9 7 0.00024 29.9 6.5 53 34-94 24-81 (104)
221 3lpe_A Putative transcription 76.8 6.1 0.00021 29.1 6.1 34 45-82 40-73 (92)
222 2g0c_A ATP-dependent RNA helic 75.5 2.2 7.6E-05 29.9 3.2 43 44-94 32-74 (76)
223 2l08_A Regulator of nonsense t 68.8 6.9 0.00024 29.5 4.7 39 59-97 53-96 (97)
224 2d9n_A Cleavage and polyadenyl 66.2 2.2 7.6E-05 30.5 1.4 27 99-125 8-34 (77)
225 3d45_A Poly(A)-specific ribonu 65.8 7.4 0.00025 37.5 5.4 42 32-80 453-494 (507)
226 3h7h_B Transcription elongatio 65.3 5.3 0.00018 30.5 3.5 36 44-83 40-75 (106)
227 2rhk_C Cleavage and polyadenyl 64.0 1.8 6.3E-05 30.6 0.6 30 96-125 11-40 (72)
228 3d2q_A Muscleblind-like protei 58.8 2.4 8.2E-05 29.8 0.4 24 101-124 6-30 (70)
229 1m9o_A Tristetraproline; Cys3H 58.3 4 0.00014 28.6 1.5 31 96-126 7-38 (77)
230 2exu_A Transcription initiatio 53.4 7.8 0.00027 33.0 2.8 37 45-85 139-175 (200)
231 2cqe_A KIAA1064 protein; CCCH 49.9 6.3 0.00022 29.5 1.5 22 102-123 14-35 (98)
232 2d9m_A Zinc finger CCCH-type d 49.6 4.8 0.00016 28.5 0.7 25 102-126 21-45 (69)
233 3d2n_A Muscleblind-like protei 49.4 6 0.0002 28.8 1.3 25 101-125 9-34 (83)
234 3p8b_B Transcription antitermi 47.4 31 0.001 27.4 5.4 35 45-83 33-67 (152)
235 2rpp_A Muscleblind-like protei 45.4 5.6 0.00019 29.5 0.6 26 100-125 16-42 (89)
236 2e7g_A Putative ribosome-bindi 45.1 47 0.0016 25.8 6.0 68 29-99 20-103 (129)
237 2okq_A Hypothetical protein YB 44.2 1.1E+02 0.0037 24.4 8.0 56 23-78 38-109 (141)
238 3u1l_A PRE-mRNA-splicing facto 41.8 7 0.00024 34.0 0.7 30 102-131 71-100 (240)
239 2e5s_A Otthump00000018578; ZF- 40.8 3.1 0.00011 31.3 -1.5 25 101-125 20-45 (98)
240 3d2q_A Muscleblind-like protei 39.0 8.9 0.0003 26.7 0.8 27 98-125 39-65 (70)
241 3fmb_A Dimeric protein of unkn 34.0 61 0.0021 24.6 5.0 56 17-73 31-89 (118)
242 3lo3_A Uncharacterized conserv 33.8 1.1E+02 0.0038 22.1 6.2 51 27-77 18-71 (94)
243 1k4n_A Protein EC4020, protein 33.4 98 0.0034 26.0 6.4 68 19-95 12-88 (192)
244 4bby_A Alkyldihydroxyacetoneph 32.0 44 0.0015 32.9 4.8 47 34-80 359-409 (658)
245 1wvf_A 4-cresol dehydrogenase 29.7 32 0.0011 32.8 3.2 44 34-77 217-262 (520)
246 2e5s_A Otthump00000018578; ZF- 26.0 18 0.00063 27.0 0.6 27 98-125 53-79 (98)
247 3ts2_A Protein LIN-28 homolog 25.2 9.8 0.00034 30.6 -1.1 28 33-67 2-29 (148)
248 3fjv_A Uncharacterized novel p 20.7 1.4E+02 0.0048 25.0 5.2 55 33-93 68-129 (194)
No 1
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.86 E-value=2e-22 Score=157.69 Aligned_cols=95 Identities=42% Similarity=0.901 Sum_probs=80.9
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHhHHHHHHHHHHHHHH-hccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh
Q 024094 1 MYQRLDMITPGVDAQGNPLDPRKIQEHFEDFYEDLFEEL-NKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSL 79 (272)
Q Consensus 1 ~y~np~~~~~~~~~~~~~~~~~~~~~~yd~~~eDL~~~F-~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~l 79 (272)
||+||.......+.....+++++|+++|++|++||+++| ++||+|++|.|+.+.+++++|||||+|++.++|.+|+..|
T Consensus 9 m~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 9 IYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp EEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHH
Confidence 788998655443332345688899999999999999999 9999999999998777889999999999999999999999
Q ss_pred CCCeeCCeeEEEEeec
Q 024094 80 SGRFYAGRPIIVDFSP 95 (272)
Q Consensus 80 nG~~~~GR~I~ve~s~ 95 (272)
||++|+|++|.|+|++
T Consensus 89 ng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 89 NNRWFNGQPIHAELSP 104 (104)
T ss_dssp TTCEETTEECCEEECC
T ss_pred CCCEECCEEEEEEEcC
Confidence 9999999999999975
No 2
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.79 E-value=1.1e-19 Score=142.43 Aligned_cols=86 Identities=24% Similarity=0.489 Sum_probs=77.9
Q ss_pred CCCCChHHHh--HHHHHHHHHHHHHHhccCCeEEEEEeeCCC---CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 024094 16 GNPLDPRKIQ--EHFEDFYEDLFEELNKYGEIESLNICDNLA---DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPII 90 (272)
Q Consensus 16 ~~~~~~~~~~--~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~---~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ 90 (272)
.|||+++++. .+|+++++||+++|++||+|++|.|+.+.. ++++|+|||+|++.++|.+|+++|||++|+||+|+
T Consensus 11 ~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~ 90 (105)
T 3v4m_A 11 MNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVV 90 (105)
T ss_dssp ESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 6899999985 689999999999999999999999987653 35789999999999999999999999999999999
Q ss_pred EEeecCCCchh
Q 024094 91 VDFSPVTDFRE 101 (272)
Q Consensus 91 ve~s~~~~~r~ 101 (272)
|+|++...|..
T Consensus 91 v~~~~~~~f~~ 101 (105)
T 3v4m_A 91 TKYCDPDSYHR 101 (105)
T ss_dssp EEEECHHHHHT
T ss_pred EEEeCHHHHhh
Confidence 99998776643
No 3
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=1e-18 Score=168.00 Aligned_cols=71 Identities=20% Similarity=0.389 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+.+++++|+++|++||+|+.|.|+.+ .+++++|||||+|.+.++|++||.+|||.+|.|++|.|+|+....
T Consensus 112 ~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 112 YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred CCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 45678999999999999999999855 578899999999999999999999999999999999999997643
No 4
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.75 E-value=5e-19 Score=140.95 Aligned_cols=83 Identities=28% Similarity=0.496 Sum_probs=75.7
Q ss_pred CCCCChHHHh--HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 16 GNPLDPRKIQ--EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 16 ~~~~~~~~~~--~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
.|||+++++. +.|++|++||+++|++||+|++|.|+.+. ++|+|||+|++.++|.+|++.|||++|+||+|+|+|
T Consensus 13 ~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~ 89 (114)
T 3s6e_A 13 SNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAY 89 (114)
T ss_dssp ESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 6899998864 57999999999999999999999997643 479999999999999999999999999999999999
Q ss_pred ecCCCchh
Q 024094 94 SPVTDFRE 101 (272)
Q Consensus 94 s~~~~~r~ 101 (272)
++...|..
T Consensus 90 ~~~~~y~~ 97 (114)
T 3s6e_A 90 VPLPTYHN 97 (114)
T ss_dssp ECHHHHHH
T ss_pred EcHHHHHH
Confidence 99888754
No 5
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.74 E-value=1.5e-18 Score=138.87 Aligned_cols=83 Identities=24% Similarity=0.565 Sum_probs=73.8
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHhccCCeEEEEEeeCC-----CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 024094 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNL-----ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPII 90 (272)
Q Consensus 16 ~~~~~~~~~~~~yd~~~eDL~~~F~kfG~I~~i~v~~~~-----~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ 90 (272)
.|||++++|.+ ++++||+++|++||+|++|.|+.+. +++++|+|||+|++.++|.+|+++|||++|+||+|+
T Consensus 26 ~Nm~~~~el~d---dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~ 102 (118)
T 3ue2_A 26 RNMVDPKDIDD---DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVV 102 (118)
T ss_dssp ESCSCGGGCCT---THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred ECCCCHHHHHH---HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 68999998764 5789999999999999999998553 346789999999999999999999999999999999
Q ss_pred EEeecCCCchh
Q 024094 91 VDFSPVTDFRE 101 (272)
Q Consensus 91 ve~s~~~~~r~ 101 (272)
|+|++...|..
T Consensus 103 v~~~~~~~f~~ 113 (118)
T 3ue2_A 103 AEVYDQERFDN 113 (118)
T ss_dssp EEEECHHHHHT
T ss_pred EEEcChHhccc
Confidence 99998877753
No 6
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=5e-18 Score=132.96 Aligned_cols=83 Identities=27% Similarity=0.464 Sum_probs=71.2
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHhccCCeEEEEEeeCC--CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNL--ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 16 ~~~~~~~~~~~~yd~~~eDL~~~F~kfG~I~~i~v~~~~--~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
.||+++++|. +++++||+++|++||+|++|.|+.+. +++++|||||+|.+.++|.+|++.|||++|+|++|.|+|
T Consensus 14 ~Nm~~~~~l~---dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~ 90 (105)
T 2pe8_A 14 RNMVGAGEVD---EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACF 90 (105)
T ss_dssp ESSSCSCCC------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred EcCCChHHhh---HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEE
Confidence 4777777654 45789999999999999999998653 367899999999999999999999999999999999999
Q ss_pred ecCCCchh
Q 024094 94 SPVTDFRE 101 (272)
Q Consensus 94 s~~~~~r~ 101 (272)
++...|..
T Consensus 91 a~~~~f~~ 98 (105)
T 2pe8_A 91 YNLDKFRV 98 (105)
T ss_dssp CCHHHHHT
T ss_pred cCHHHhhh
Confidence 98766654
No 7
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.4e-16 Score=120.91 Aligned_cols=78 Identities=31% Similarity=0.491 Sum_probs=69.6
Q ss_pred CCCCChHHHh---HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEE
Q 024094 16 GNPLDPRKIQ---EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVD 92 (272)
Q Consensus 16 ~~~~~~~~~~---~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve 92 (272)
.+|+++.+|. ++|+++++||+++|++||+|+.|.|++. +++|||||+|.+.++|++|+..|||..|+|++|.|+
T Consensus 21 ~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~ 97 (112)
T 2dit_A 21 KNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQ 97 (112)
T ss_dssp ESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETT---CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred EcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecC---CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4778877764 5789999999999999999999977543 368999999999999999999999999999999999
Q ss_pred eecC
Q 024094 93 FSPV 96 (272)
Q Consensus 93 ~s~~ 96 (272)
|+..
T Consensus 98 ~a~~ 101 (112)
T 2dit_A 98 AWDG 101 (112)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 9754
No 8
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.9e-15 Score=116.49 Aligned_cols=69 Identities=23% Similarity=0.389 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
.++.+++||+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|++.|||..|.|++|.|+|+.
T Consensus 28 p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 28 PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 445677899999999999999999854 568899999999999999999999999999999999999985
No 9
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.58 E-value=3.8e-15 Score=117.08 Aligned_cols=70 Identities=21% Similarity=0.173 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+..+++|+++|++||+|++|.|+.+ .++.++|||||+|++.++|++|++.|||..|.|++|.|+++....
T Consensus 17 ~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 17 NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 4456789999999999999999855 568999999999999999999999999999999999999986543
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.56 E-value=8.3e-15 Score=112.65 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCC-eeEEEEeec
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICD-NLADHMVGNVYVQFREEEQAARALKSLSGRFYAG-RPIIVDFSP 95 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~-~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G-R~I~ve~s~ 95 (272)
+.++.++++|.++|++||+|.+|.|+. ..++.++|||||+|.+.++|++|++.|||..|.| ++|.|.++.
T Consensus 20 ~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~ 91 (100)
T 3ns6_A 20 AKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMK 91 (100)
T ss_dssp GGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESH
T ss_pred HHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECc
Confidence 345788999999999999999999984 4568899999999999999999999999999999 999999974
No 11
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.54 E-value=1.8e-14 Score=111.20 Aligned_cols=69 Identities=20% Similarity=0.381 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
.+..+++||+++|++||+|+.|.|+.+.++.++|||||+|.+.++|++|++.|+|..|.|++|.|+|+.
T Consensus 38 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 38 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 345667899999999999999999977788899999999999999999999999999999999999985
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=105.86 Aligned_cols=67 Identities=16% Similarity=0.339 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.+++||+++|++||.|..|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+..
T Consensus 18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 18 ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 456789999999999999999865 5788999999999999999999999999999999999999864
No 13
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=1.9e-14 Score=108.58 Aligned_cols=68 Identities=25% Similarity=0.296 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
+...+++|+++|++||+|+.|.|+.+..+.++|||||+|.+.++|++|+..|||..|.|++|.|+|+.
T Consensus 26 ~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 26 ARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 34566899999999999999999977678889999999999999999999999999999999999975
No 14
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=109.32 Aligned_cols=70 Identities=27% Similarity=0.321 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.+++||.++|++||+|+.|.|+.+.++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 27 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 96 (100)
T 2do4_A 27 FSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSG 96 (100)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCC
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 3456789999999999999999987778889999999999999999999999999999999999998653
No 15
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.52 E-value=3.4e-14 Score=104.40 Aligned_cols=68 Identities=19% Similarity=0.288 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
..++||.++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 13 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 13 VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 346789999999999999999855 67889999999999999999999999999999999999998643
No 16
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.52 E-value=6.6e-15 Score=128.01 Aligned_cols=83 Identities=23% Similarity=0.548 Sum_probs=73.1
Q ss_pred CCCCChHHHhHHHHHHHHHHHHHHhccCCeEEEEEeeCC-----CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEE
Q 024094 16 GNPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNL-----ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPII 90 (272)
Q Consensus 16 ~~~~~~~~~~~~yd~~~eDL~~~F~kfG~I~~i~v~~~~-----~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ 90 (272)
.+++++++++++ +.+||.++|++||+|.+|.|+.+. +++++|++||+|.+.++|.+|++.|||++|+||+|.
T Consensus 130 ~n~v~~~e~~~e---~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~ 206 (222)
T 3dxb_A 130 RNMVDPKDIDDD---LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVV 206 (222)
T ss_dssp ESSCCGGGCCTT---HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred hcCCCHHHHHHH---HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEE
Confidence 578888887754 568999999999999999998543 248999999999999999999999999999999999
Q ss_pred EEeecCCCchh
Q 024094 91 VDFSPVTDFRE 101 (272)
Q Consensus 91 ve~s~~~~~r~ 101 (272)
|+|+++.+|+.
T Consensus 207 ~~~~~~~~f~~ 217 (222)
T 3dxb_A 207 AEVYDQERFDN 217 (222)
T ss_dssp EEECCHHHHHT
T ss_pred EEEcCHHHhhh
Confidence 99999887754
No 17
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.51 E-value=2.5e-14 Score=105.59 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 30 DFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
..+++|+++|++||+|..|.|+.+ .++.++|+|||+|.+.++|++|+..|||..|.|++|.|+|+
T Consensus 19 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 19 VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345789999999999999999744 67788999999999999999999999999999999999997
No 18
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.50 E-value=1.7e-14 Score=106.22 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCe-eEEE
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGR-PIIV 91 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR-~I~v 91 (272)
.++.++++|.++|++||+|..|.|+ ..++.++|||||+|.+.++|++|+..|||..|.|+ +|.|
T Consensus 16 ~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 16 RLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4566889999999999999999998 45678899999999999999999999999999999 8876
No 19
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=3e-14 Score=108.41 Aligned_cols=70 Identities=24% Similarity=0.327 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+.+++||+++|++||+|+.|.|+.+. ++.++|||||+|.+.++|++|+..|||..|.|++|.|+++....
T Consensus 19 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 19 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 34567899999999999999998654 78889999999999999999999999999999999999987654
No 20
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.50 E-value=1.2e-14 Score=110.68 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
..++++|.++|.+||+|++|+|.. ++|||||+|.++++|.+|+++|||..+.|++|.|++++.
T Consensus 18 ~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 18 QIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp TCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred cCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 455689999999999999999975 469999999999999999999999999999999999853
No 21
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.3e-14 Score=109.66 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.++++|+++|++||+|+.|.|+.+.++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 25 ~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 25 YKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 3456789999999999999999997777889999999999999999999999999999999999998643
No 22
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.4e-14 Score=107.14 Aligned_cols=68 Identities=25% Similarity=0.354 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++++|+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 17 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 85 (95)
T 2dnz_A 17 ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER 85 (95)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence 456789999999999999999865 45888999999999999999999999999999999999998654
No 23
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.50 E-value=5.7e-14 Score=109.79 Aligned_cols=71 Identities=20% Similarity=0.352 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
++.+++||+++|++||.|+.|.|+.+ .++.++|||||+|.+.++|++|+..|+|..|.|++|.|+|+....
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 25 PEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 34567899999999999999999866 478899999999999999999999999999999999999986543
No 24
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.50 E-value=3.7e-14 Score=111.67 Aligned_cols=69 Identities=20% Similarity=0.341 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+..++||+++|++||+|++|.|+.+. +.++|||||+|.+.++|++||+.|+|..|.|++|.|+++....
T Consensus 16 ~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 16 SIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 44567999999999999999998654 3478999999999999999999999999999999999986543
No 25
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.3e-14 Score=109.09 Aligned_cols=70 Identities=23% Similarity=0.337 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+..++++|+++|++||+|..|.|+.+ ++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+....
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 25 DGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp TTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 34566899999999999999999977 78889999999999999999999999999999999999986543
No 26
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.50 E-value=4.2e-14 Score=108.68 Aligned_cols=71 Identities=18% Similarity=0.334 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCC---eeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAG---RPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G---R~I~ve~s~~~~ 98 (272)
+...+++|.++|++||+|+.|.|+.+.++.++|||||+|.+.++|++|+..|||..|.| ++|.|.|+....
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 25 KQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCc
Confidence 34567899999999999999999977788899999999999999999999999999998 999999986543
No 27
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.9e-14 Score=104.41 Aligned_cols=67 Identities=27% Similarity=0.315 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
...+++|+++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+.
T Consensus 26 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 26 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 3456789999999999999999855 457889999999999999999999999999999999999975
No 28
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.5e-14 Score=108.92 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
++.++++|+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+....
T Consensus 25 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 25 EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp TTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred CCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 34567899999999999999999866 578899999999999999999999999999999999999986543
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.49 E-value=2.9e-14 Score=112.63 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+.+++||+++|++||.|+.|.|+.+.++.++|||||+|.+.++|++|++.|||..|.|++|.|+|+....
T Consensus 18 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 18 ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 3556789999999999999999977688899999999999999999999999999999999999986543
No 30
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.6e-14 Score=106.82 Aligned_cols=67 Identities=19% Similarity=0.405 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
++.+++||+++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|++.|||..|.|++|.|+|+
T Consensus 26 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 26 FSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp TTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 45567899999999999999999855 45778999999999999999999999999999999999997
No 31
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.49 E-value=5.4e-14 Score=106.64 Aligned_cols=70 Identities=20% Similarity=0.366 Sum_probs=63.0
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 30 DFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
..++||.++|++||.|..|.|+.+ .++.++|||||+|.+.++|++|++.|+|..|+|+.|.|+|+.....
T Consensus 14 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 14 QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 346789999999999999999865 4678899999999999999999999999999999999999876553
No 32
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.48 E-value=4.5e-14 Score=110.53 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++..++||+++|++||.|+.|.|+.+. ++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 34 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 105 (115)
T 2cpz_A 34 PQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 105 (115)
T ss_dssp CSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCS
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence 4456778999999999999999998654 7889999999999999999999999999999999999998654
No 33
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=3.5e-14 Score=109.97 Aligned_cols=69 Identities=14% Similarity=0.240 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCe-eEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGR-PIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR-~I~ve~s~~ 96 (272)
.++.++++|.++|++||+|..|.|+ ..++.++|||||+|.+.++|++|+..|||..|.|+ +|.|.++..
T Consensus 30 ~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 30 RLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTD 99 (105)
T ss_dssp TTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCC
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcch
Confidence 3445889999999999999999998 46678899999999999999999999999999999 999999853
No 34
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.6e-14 Score=109.06 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.+..++++|+++|++||+|+.|.|+.+. ++.++|||||+|.+.++|++|+..|+|..|.|++|.|+++...
T Consensus 24 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (105)
T 1x5u_A 24 DEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH 95 (105)
T ss_dssp CTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 3455678999999999999999998654 7889999999999999999999999999999999999998654
No 35
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.48 E-value=1.7e-14 Score=108.48 Aligned_cols=69 Identities=22% Similarity=0.227 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhccC--CeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYG--EIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG--~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+.+++||+++|++|| .|.+|.|+.+ .++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++...
T Consensus 12 ~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 12 WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 456689999999999 9999999865 57889999999999999999999999999999999999998653
No 36
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=9e-14 Score=108.00 Aligned_cols=62 Identities=18% Similarity=0.293 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCC-----eeEEEEeec
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAG-----RPIIVDFSP 95 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G-----R~I~ve~s~ 95 (272)
++++++||+++|++||+|+.|.|+.+ |||||+|++.++|++||+.|||..|.| ++|.|+++.
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 25 PSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 34567899999999999999999875 899999999999999999999999999 999999974
No 37
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3e-14 Score=107.64 Aligned_cols=69 Identities=19% Similarity=0.392 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhccCCeEEE-EEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 30 DFYEDLFEELNKYGEIESL-NICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i-~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.++++|+++|++||+|..| .|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+....
T Consensus 17 ~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 17 IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 3467899999999999999 88865 678889999999999999999999999999999999999986544
No 38
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.48 E-value=1e-14 Score=110.47 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhccC-CeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYG-EIESLNICDN-LADHMVGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG-~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~l-nG~~~~GR~I~ve~s~~~ 97 (272)
+.+++||.++|++|| +|++|.|+.+ .++.++|||||+|.+.++|++|++.| ++..|.|++|.|+|+...
T Consensus 12 ~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 12 AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK 83 (91)
T ss_dssp SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSC
T ss_pred CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCC
Confidence 345679999999999 8999999854 56889999999999999999999988 466799999999998653
No 39
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.5e-14 Score=106.47 Aligned_cols=70 Identities=27% Similarity=0.320 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
++.++++|+++|++||+|+.|.|+.+... ++|||||+|.+.++|++|+..|+|..|.|++|.|+|+....
T Consensus 25 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 25 FRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp TTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 34566789999999999999999866543 78999999999999999999999999999999999986543
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.2e-14 Score=107.55 Aligned_cols=69 Identities=28% Similarity=0.476 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+..++++|+++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+..
T Consensus 33 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 33 EEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 45567899999999999999999855 5688899999999999999999999999999999999999754
No 41
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.5e-14 Score=108.57 Aligned_cols=70 Identities=24% Similarity=0.405 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.++++|+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|++.|||..|.|++|.|+|+...
T Consensus 22 ~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 92 (102)
T 1x5s_A 22 FDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKS 92 (102)
T ss_dssp TTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 34566789999999999999999854 46778999999999999999999999999999999999998654
No 42
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=6.4e-14 Score=107.87 Aligned_cols=71 Identities=17% Similarity=0.366 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC--CCCCceeEEEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN--LADHMVGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~--~~~~~~G~afVeF~~~~dA~~A~~~l-nG~~~~GR~I~ve~s~~~~ 98 (272)
+..++++|+++|++||+|+.|.|+.. .++.++|||||+|.+.++|++|+..| ||..|.|++|.|+|+....
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 25 FQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred CcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 34567899999999999999999865 36888999999999999999999999 9999999999999987643
No 43
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.5e-14 Score=108.59 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+.++++|+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+....
T Consensus 23 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 23 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence 3456789999999999999999755 567889999999999999999999999999999999999986543
No 44
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.47 E-value=2.2e-14 Score=110.12 Aligned_cols=70 Identities=19% Similarity=0.331 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhccCC--eEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCC----eeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGE--IESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGR----FYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~--I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~----~~~GR~I~ve~s~~ 96 (272)
.++.++++|.++|++||. |.+|.|+.+ .++.++|||||+|.+.++|++|++.|||. .++|++|.|+|+..
T Consensus 18 ~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 18 APHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 345677899999999995 678888754 56889999999999999999999999997 58999999999853
No 45
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.47 E-value=6.6e-14 Score=106.76 Aligned_cols=67 Identities=22% Similarity=0.438 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhccCCeEE--------EEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 29 EDFYEDLFEELNKYGEIES--------LNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~--------i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
+.+++||+++|++||.|.. |.|+.+ .++.++|||||+|.+.++|++|++.|||..|.|+.|.|+++.
T Consensus 24 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 24 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 4566899999999999999 988865 568899999999999999999999999999999999999973
No 46
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.46 E-value=7.9e-14 Score=104.51 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+.+++||+++|++||+|+.|.|+. .++.++|||||+|.+.++|++|+..|+|..|.|++|.|+|+...
T Consensus 19 ~~t~~~l~~~f~~~G~v~~~~i~~-~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 86 (92)
T 2dgv_A 19 DFTWKMLKDKFNECGHVLYADIKM-ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNA 86 (92)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEE-SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEc-cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 345678999999999999999987 36778999999999999999999999999999999999998653
No 47
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.1e-13 Score=106.13 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.++++|+++|++||+|+.|.|+.+... .+|||||+|.+.++|++|+..|+|..|.|++|.|+|+...
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2cqi_A 25 RDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTP 93 (103)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCT
T ss_pred ccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCC
Confidence 44567899999999999999999876433 5899999999999999999999999999999999998654
No 48
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.46 E-value=3.6e-14 Score=106.98 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 28 FEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
++.+++||+++|++||.|..|.|+ +..++.++|||||+|.+.++|++|++.|||..|.|++|.|+++.
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 25 FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp TTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 345678999999999999977765 55678899999999999999999999999999999999999975
No 49
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.46 E-value=7.5e-14 Score=103.48 Aligned_cols=69 Identities=23% Similarity=0.397 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCC-CCC-ceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNL-ADH-MVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~-~~~-~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+.+++||.++|++||+|..|.|+.+. ++. ++|+|||+|.+.++|++|+..|||..|.|+.|.|+++...
T Consensus 15 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 15 NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 34567899999999999999997543 333 7899999999999999999999999999999999998543
No 50
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.46 E-value=9.5e-14 Score=112.04 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCch
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 100 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r 100 (272)
.++.+++||+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|+|+.....+
T Consensus 51 p~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 51 PTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp STTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 567788999999999999999999744 56788999999999999999999999999999999999998765443
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=8.6e-14 Score=105.62 Aligned_cols=68 Identities=29% Similarity=0.350 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCC----CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNL----ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~----~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++++|+++|++||+|+.|.|+.+. ++.++|||||+|.+.++|++|+..|||..|.|++|.|+++...
T Consensus 17 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (98)
T 2cpf_A 17 TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERA 88 (98)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCS
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCC
Confidence 4567899999999999999998442 3478999999999999999999999999999999999998654
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=3.9e-14 Score=108.64 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+.+++||+++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 24 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 24 RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 4566789999999999999999855 45888999999999999999999999999999999999998653
No 53
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=6.5e-14 Score=109.45 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=61.8
Q ss_pred HHHHHHHHHH---HHHhccCCeEEEEEeeCCC----CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLF---EELNKYGEIESLNICDNLA----DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~---~~F~kfG~I~~i~v~~~~~----~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.++..++||. ++|++||+|+.|.|+.+.. ..++|||||+|++.++|++|++.|||..|+|++|.|+|+..+.
T Consensus 24 p~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 24 SQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp CTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred CCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 3455667888 9999999999999985532 3567999999999999999999999999999999999987543
No 54
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=8.1e-14 Score=110.61 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.+..++++|+++|++||+|+.|.|+.+.++.++|||||+|.+.++|++|+..|+|..|.|++|.|+|+....
T Consensus 44 p~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 44 DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp CSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred CCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 445677899999999999999999876688899999999999999999999999999999999999987543
No 55
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.45 E-value=1.6e-13 Score=113.07 Aligned_cols=70 Identities=20% Similarity=0.359 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.++++++||+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++||..|||..|.|++|.|+|+..
T Consensus 48 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 48 SFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 466788999999999999999999855 4678899999999999999999999999999999999999864
No 56
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=8.3e-14 Score=106.68 Aligned_cols=72 Identities=22% Similarity=0.390 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCch
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 100 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r 100 (272)
..++++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|++|++.|||..|.|++|.|+|+....-+
T Consensus 19 ~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 91 (104)
T 1p1t_A 19 EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNK 91 (104)
T ss_dssp TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHH
T ss_pred cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccch
Confidence 4566799999999999999999854 57888999999999999999999999999999999999998765543
No 57
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=105.48 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+..++||+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|+. |+|..|.|++|.|.++...
T Consensus 21 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 21 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 3456789999999999999999855 467889999999999999999998 9999999999999998654
No 58
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.45 E-value=2.1e-14 Score=113.14 Aligned_cols=61 Identities=15% Similarity=0.271 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
++++++||+++|++||+|+.|.|+.+ |||||+|++.++|++||+.|||..|+|++|.|.+.
T Consensus 26 ~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 26 PSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp SSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 34456789999999999999999864 89999999999999999999999999999666554
No 59
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=110.78 Aligned_cols=67 Identities=21% Similarity=0.424 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
++.+.|.++|++||+|++|.|.. ++.++|||||+|.+.++|..|+..|||..|.|++|.|+|+....
T Consensus 45 ~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 45 KLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp HHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred HHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 45556889999999999998864 46678999999999999999999999999999999999987654
No 60
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=8.2e-14 Score=106.86 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhc-cCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCe-eCCeeEEEEeecCC
Q 024094 30 DFYEDLFEELNK-YGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRF-YAGRPIIVDFSPVT 97 (272)
Q Consensus 30 ~~~eDL~~~F~k-fG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~-~~GR~I~ve~s~~~ 97 (272)
.++++|.++|++ ||.|+.|.|+.+.++.++|||||+|.+.++|++|+..|+|.. |.|++|.|+++...
T Consensus 21 ~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~ 90 (104)
T 2dhg_A 21 VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPK 90 (104)
T ss_dssp CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCC
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCC
Confidence 456789999999 999999999877688899999999999999999999999999 99999999998654
No 61
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=107.02 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhC------CCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLS------GRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~ln------G~~~~GR~I~ve~s~~~ 97 (272)
++.++++|+++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|+..|+ |..|.|++|.|.|+...
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~ 101 (111)
T 1x4h_A 25 FDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR 101 (111)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCC
Confidence 44567899999999999999999854 567889999999999999999999999 99999999999998654
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.45 E-value=1.6e-13 Score=102.10 Aligned_cols=67 Identities=22% Similarity=0.382 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
..++++|+++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|+ .|+|..|.|++|.|+++..
T Consensus 17 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 17 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 3456789999999999999999865 47888999999999999999999 9999999999999999754
No 63
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.2e-13 Score=105.17 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=54.9
Q ss_pred HHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 35 LFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 35 L~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
|.++|++||+|+.|.|+.+... +|||||+|.+.++|++|+..|||..|.|++|.|+++...
T Consensus 30 l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~ 90 (96)
T 2dgx_A 30 LQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGA 90 (96)
T ss_dssp HHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred HHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4499999999999999865443 799999999999999999999999999999999998653
No 64
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=7.5e-14 Score=108.47 Aligned_cols=67 Identities=19% Similarity=0.377 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
+++++++|.++|++||+|.+|.|+.+..+.++|||||+|.+.++|.+|+. |+|..|+|++|.|.+..
T Consensus 21 ~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 21 TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp TTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 34567899999999999999999976668899999999999999999999 99999999999999854
No 65
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.44 E-value=1.4e-13 Score=106.81 Aligned_cols=70 Identities=27% Similarity=0.403 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.+..++++|+++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|+..|+|..|.|++|.|+|+..
T Consensus 35 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 35 HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 345667899999999999999999855 5688899999999999999999999999999999999999754
No 66
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.44 E-value=8.2e-14 Score=110.59 Aligned_cols=70 Identities=29% Similarity=0.498 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.++.++++|+++|++||.|+.|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+..
T Consensus 31 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 31 HEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp CTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 345677899999999999999999855 4788899999999999999999999999999999999999753
No 67
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.44 E-value=8.9e-14 Score=112.10 Aligned_cols=71 Identities=30% Similarity=0.377 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.+++||+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++||..|+|..|+|++|.|+|+..+
T Consensus 55 p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 55 SLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp TTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 345667899999999999999999854 56788999999999999999999999999999999999998653
No 68
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=7e-14 Score=106.14 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
++.+++||+++|++||.|..|.|+ +..++.++|||||+|.+.++|++|++.|||..|.|++|.|+++..
T Consensus 25 ~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 25 FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp TTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 456678999999999999877665 556788999999999999999999999999999999999999753
No 69
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=106.01 Aligned_cols=69 Identities=20% Similarity=0.292 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.+++||+++|++||+|+.|.|+.. +.++|||||+|.+.++|++|++.|||..|.|++|.|+|+...
T Consensus 31 p~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 99 (109)
T 1x4a_A 31 PPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG 99 (109)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence 345677899999999999999999653 447899999999999999999999999999999999998653
No 70
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.43 E-value=3.3e-13 Score=105.20 Aligned_cols=70 Identities=29% Similarity=0.413 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.+..++++|+++|++||+|..|.|+.+ .++.++|||||+|.+.++|+.|++.|+|..|.|++|.|+++..
T Consensus 35 p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 35 HFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp CSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 345677899999999999999999854 5688899999999999999999999999999999999999864
No 71
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.43 E-value=9e-14 Score=109.14 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
.++..++||+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|++.|||..|.|++|.|+|+
T Consensus 49 p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 49 PQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 556788999999999999999999855 56788999999999999999999999999999999999996
No 72
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=113.38 Aligned_cols=72 Identities=17% Similarity=0.237 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhccC--CeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 26 EHFEDFYEDLFEELNKYG--EIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG--~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
-.++.+++||.++|++|| .|..|.|+.+ .++.++|||||+|.+.++|++||..|||..|.|++|.|.++..+
T Consensus 63 Lp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 63 FSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred CCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 356788999999999999 9999999855 67889999999999999999999999999999999999998653
No 73
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=107.52 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhccCCeE--------EEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIE--------SLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~--------~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.++++|+++|++||.|. .|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+++...
T Consensus 24 p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 24 NDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 103 (113)
T ss_dssp CTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCC
T ss_pred CCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCC
Confidence 34566789999999999999 6888765 67889999999999999999999999999999999999998654
No 74
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=104.26 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhccCCeE-EEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCee----EEEEeecCC
Q 024094 30 DFYEDLFEELNKYGEIE-SLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRP----IIVDFSPVT 97 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~-~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~----I~ve~s~~~ 97 (272)
..+++|+++|++||+|. .|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|+. |.|+|+...
T Consensus 21 ~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 21 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 45678999999999999 9999865 47889999999999999999999999999999999 999998653
No 75
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.42 E-value=1.3e-13 Score=106.01 Aligned_cols=71 Identities=21% Similarity=0.270 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCee---CCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFY---AGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~---~GR~I~ve~s~~~~ 98 (272)
+...++||+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|+..|||..+ .|++|.|.++....
T Consensus 23 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 23 RNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp TTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred CCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 34566799999999999999999855 4588899999999999999999999999998 99999999986543
No 76
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.42 E-value=3.4e-13 Score=106.74 Aligned_cols=69 Identities=22% Similarity=0.390 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.++.+++||+++|++||.|+.|.|+.+ .++.++|||||+|.+.++|++|+ .|+|..|.|+.|.|+++..
T Consensus 45 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 45 DYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp CTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 566789999999999999999999854 57888999999999999999999 7999999999999999864
No 77
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=2.9e-13 Score=103.86 Aligned_cols=68 Identities=24% Similarity=0.393 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++..++||+++|++|| |+.|.|+.+ .++.++|||||+|.+.++|++|+ .|||..|.|++|.|+++...
T Consensus 25 ~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 25 FNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp TTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCC
T ss_pred CCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCC
Confidence 4456789999999997 999999855 46889999999999999999999 89999999999999998653
No 78
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=1.6e-13 Score=107.54 Aligned_cols=67 Identities=16% Similarity=0.333 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
++.+++||+++|++||.|..|.|+. .+|||||+|.+.++|+.|+..|||..|.|++|.|+|+....|
T Consensus 20 ~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 20 AGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 3456789999999999999999875 358999999999999999999999999999999999987655
No 79
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.9e-13 Score=107.04 Aligned_cols=69 Identities=19% Similarity=0.281 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.+++||+++|++||+|+.|.|+.+ .+++++|||||+|.+.++|++||..|++ .|.|++|.|+|+...
T Consensus 27 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 27 YHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp SSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred CCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 44567899999999999999999865 4688899999999999999999999999 899999999998643
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.3e-13 Score=107.54 Aligned_cols=70 Identities=27% Similarity=0.321 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.++++|+++|++||+|+.|.|+.+.. .++|||||+|.+.++|++|+..|+|..|.|++|.|+++...
T Consensus 38 p~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 38 PFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 45677889999999999999999986543 47899999999999999999999999999999999998653
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.2e-13 Score=108.33 Aligned_cols=68 Identities=15% Similarity=0.323 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC--CCeeCCeeEEEEeecCCCch
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSPVTDFR 100 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln--G~~~~GR~I~ve~s~~~~~r 100 (272)
++.+++||+++|++||+|++|.|+.. +|||||+|++.++|++|++.|+ |..|.|++|.|+|+......
T Consensus 26 ~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 26 IDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp TTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 34567899999999999999999864 5999999999999999999886 47999999999999765443
No 82
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.5e-13 Score=107.38 Aligned_cols=69 Identities=26% Similarity=0.335 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.++..+++|+++|++||.|+.|.|+.+ .++.++|||||+|.+.++|++|+ .|||..|.|+.|.|+++..
T Consensus 34 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 34 AARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp CTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 567788999999999999999999854 45788999999999999999999 9999999999999999753
No 83
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.1e-13 Score=104.80 Aligned_cols=69 Identities=19% Similarity=0.267 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCC-C-CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNL-A-DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~-~-~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
++.+++||+++|++|| |+.|.|+.+. + +.++|||||+|.+.++|++|+ .|+|..|.|++|.|+++....
T Consensus 25 ~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 95 (104)
T 1wi8_A 25 YDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQ 95 (104)
T ss_dssp SSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCC
T ss_pred CcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCC
Confidence 3456678999999999 9999998554 3 788999999999999999999 999999999999999986543
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=3.4e-13 Score=101.09 Aligned_cols=68 Identities=25% Similarity=0.335 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.+++||+++|++| .|..|.|+.+.++.++|||||+|.+.++|++|+. |||..|.|+.|.|.++...
T Consensus 20 ~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 20 FNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp SSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred CCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 345667899999999 9999999977778899999999999999999999 9999999999999998654
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.41 E-value=8e-14 Score=100.74 Aligned_cols=64 Identities=11% Similarity=0.183 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
..++||.++|++||+|..|.|+.+. ++.++|||||+|.+.++|++|+. |+|..|+|++|.|.++
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 11 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 3567899999999999999998654 68889999999999999999998 9999999999999875
No 86
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.41 E-value=2.8e-13 Score=105.41 Aligned_cols=66 Identities=23% Similarity=0.323 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCe--eCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRF--YAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~--~~GR~I~ve~s~~~~ 98 (272)
++.+++||.++|++||+|++|.|+.. +|+|||+|++.++|.+|+..|+|.. +.|++|.|+||..+.
T Consensus 31 ~~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 31 DGVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp TTCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CCCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 45567899999999999999999853 5899999999999999999999985 789999999997643
No 87
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.40 E-value=4.5e-13 Score=111.71 Aligned_cols=70 Identities=27% Similarity=0.403 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.+..++++|+.+|++||+|+.|.|+.. .++.++|||||+|.+.++|++||..|||..|.|++|.|.|+..
T Consensus 81 p~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 81 HEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 445678899999999999999999865 5788999999999999999999999999999999999999754
No 88
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.40 E-value=2.5e-13 Score=109.05 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
.+..++++|+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|++.|||..|.|++|.|+|+
T Consensus 72 p~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 72 AEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 456777899999999999999999855 56888999999999999999999999999999999999985
No 89
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=2e-13 Score=105.44 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhccCCeEE-EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 27 HFEDFYEDLFEELNKYGEIES-LNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~-i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
.|+++++||+++|++||.|.. |.|+.+.++.++|||||+|.+.++|++||.. +|..|.|+.|.|.++....+
T Consensus 24 p~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~~ 96 (104)
T 1wg5_A 24 PFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAEV 96 (104)
T ss_dssp CTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTTS
T ss_pred CCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHHH
Confidence 566778899999999999997 8888777888999999999999999999997 99999999999999876554
No 90
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=1.9e-13 Score=108.71 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee-----CCeeEEEEeecCCCchh
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY-----AGRPIIVDFSPVTDFRE 101 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~-----~GR~I~ve~s~~~~~r~ 101 (272)
.++.++++|+++|++||+|..|.|+.. +|||||+|++.++|++|+..|||..| .|++|.|.|+....|..
T Consensus 36 ~~~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 36 GNGVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQWSG 110 (114)
T ss_dssp GGTCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCCSS
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcccC
Confidence 566788999999999999999988742 68999999999999999999999998 79999999998777643
No 91
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=4.3e-13 Score=104.57 Aligned_cols=70 Identities=17% Similarity=0.322 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee--------CCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY--------AGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~--------~GR~I~ve~s~~ 96 (272)
.++.++++|.++|++||.|..|.|+.+.++.++|||||+|.+.++|++|+..|||..| .+++|.|.|+..
T Consensus 34 p~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 34 PLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp CTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCC
Confidence 4567788999999999999999998776888999999999999999999999999999 588899999753
No 92
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=2e-13 Score=108.15 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhccCC---eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 26 EHFEDFYEDLFEELNKYGE---IESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~---I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
-.|+++++||+++|++||. |..|.|+.+..+.++|||||+|.+.++|++||+ |||..|.|+.|.|.++....
T Consensus 25 Lp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 25 LPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp CCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHH
T ss_pred CCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHH
Confidence 3567788999999999999 899999877668899999999999999999999 99999999999999986433
No 93
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.40 E-value=1.7e-13 Score=116.32 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
.++.+++||+++|++||+|+.|.|+.+.++.++|||||+|.+.++|++|++.|||..|+|++|.|+|+.....
T Consensus 97 p~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~~ 169 (177)
T 2f3j_A 97 DFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 169 (177)
T ss_dssp CSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGGG
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 5567888999999999999999998766888999999999999999999999999999999999999876543
No 94
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.40 E-value=6.8e-14 Score=104.58 Aligned_cols=70 Identities=19% Similarity=0.269 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
+..+++|+++|++||+|+.|.|+.+ .++.++|||||+|.+.+ |++|+..|||..|.|++|.|+++.....
T Consensus 12 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~ 82 (90)
T 2ki2_A 12 SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKS 82 (90)
T ss_dssp TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC-----
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 3456789999999999999999855 45788999999999999 9999999999999999999999876543
No 95
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.39 E-value=5.9e-13 Score=98.81 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
++.++++|.++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|++ +++..|+|++|.|.++
T Consensus 21 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 21 WDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 34566799999999999999999855 568899999999999999999996 5889999999999875
No 96
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=2.1e-13 Score=106.29 Aligned_cols=65 Identities=17% Similarity=0.355 Sum_probs=57.8
Q ss_pred HH-HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC--eeCCeeEEEEeecC
Q 024094 27 HF-EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGR--FYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~y-d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~--~~~GR~I~ve~s~~ 96 (272)
.+ +.+++||.++|++||+|++|.|+.. +|||||+|++.++|++|++.|+|. .|.|++|.|+|+..
T Consensus 24 p~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 24 QRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 45 5678899999999999999999864 489999999999999999999864 59999999999874
No 97
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=103.92 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
++.+++||+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|+.. +|..|.|++|.|+++....
T Consensus 26 ~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 26 WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSS
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCC
Confidence 34566899999999999999999865 5688999999999999999999998 9999999999999986543
No 98
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.39 E-value=3.5e-13 Score=110.82 Aligned_cols=71 Identities=20% Similarity=0.404 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.+++||+++|++||.|..|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 79 ~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 79 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 150 (158)
T ss_dssp CTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 556778899999999999999999865 57889999999999999999999999999999999999998654
No 99
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.1e-12 Score=99.63 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
++.+++||+++|++||+|+.|.|.. .+|||||+|.+.++|++|+..|+|..|.|++|.|+|+....
T Consensus 23 ~~~t~~~l~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 23 EDMTPTLLRGAFSPFGNIIDLSMDP-----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp SSCCHHHHHHHHTTTSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHhhCCCEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 3667789999999999999999953 46899999999999999999999999999999999986543
No 100
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.6e-13 Score=103.92 Aligned_cols=67 Identities=12% Similarity=0.220 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh--CCCeeCCeeEEEEeecCCCc
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSL--SGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~l--nG~~~~GR~I~ve~s~~~~~ 99 (272)
++.+++||.++|++||.|+.|.|+.. +|||||+|++.++|++|+..| ++..|.|++|.|+|+.....
T Consensus 25 ~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 25 GEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp TTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 45677899999999999999998864 599999999999999999987 57889999999999876544
No 101
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=4.2e-13 Score=101.84 Aligned_cols=64 Identities=20% Similarity=0.356 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC--CeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA--GRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~--GR~I~ve~s~~~ 97 (272)
+.+++||+++|++||+|+.|.|+.. +|||||+|.+.++|++|+..|||..|. |++|.|+|+...
T Consensus 28 ~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 28 NTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 3456789999999999999999864 589999999999999999999999999 999999998653
No 102
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=2.5e-13 Score=106.87 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCchh
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 101 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r~ 101 (272)
..|+++++||+++|+.| .|..|.|+.+..+.++|||||+|.+.++|++|| .|||..|.|+.|.|..+....|..
T Consensus 24 Lp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~~~~~ 97 (109)
T 2dnn_A 24 MPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATERQWVA 97 (109)
T ss_dssp CCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHHHHHH
T ss_pred CCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCccchhh
Confidence 46788899999999999 899999987666889999999999999999999 699999999999999887666544
No 103
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=1.4e-13 Score=109.55 Aligned_cols=72 Identities=21% Similarity=0.260 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhccCCeEE-EEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 27 HFEDFYEDLFEELNKYGEIES-LNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~-i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
.|+++++||.++|++||.|.. +.|.+..++.++|||||+|.+.++|++||. |||..|.|+.|.|.++....+
T Consensus 34 p~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~ 106 (124)
T 1wel_A 34 PFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGM 106 (124)
T ss_dssp CTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHH
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHH
Confidence 566778899999999999988 556677788999999999999999999999 999999999999999876554
No 104
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.7e-13 Score=108.55 Aligned_cols=69 Identities=14% Similarity=0.313 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC--CCeeCCeeEEEEeecCCCch
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSPVTDFR 100 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln--G~~~~GR~I~ve~s~~~~~r 100 (272)
.++.+++||+++|++||.|++|.|+.. +|||||+|++.++|++|++.|+ +..|.|++|.|+|+.....+
T Consensus 40 p~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 40 PIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp CTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 455677899999999999999999863 5999999999999999999998 46899999999999765544
No 105
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.5e-13 Score=105.09 Aligned_cols=70 Identities=13% Similarity=0.166 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
..|+++++||+++|++||.| .|.|+.+.++.++|||||+|++.++|++||. ||+..|.|+.|.|.++...
T Consensus 23 Lp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 23 LPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp CCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCC
T ss_pred CCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCC
Confidence 35677889999999999955 9999876788999999999999999999995 8999999999999997654
No 106
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=5.7e-13 Score=99.77 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.++++|+++|++||+|+.|.|+ +|||||+|.+.++|++|+..|+|..|.|++|.|+|+....
T Consensus 20 ~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 20 ATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp CCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 3557899999999999999998 3899999999999999999999999999999999986543
No 107
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.37 E-value=3.1e-13 Score=106.76 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.|+++++||+++|++|| +|..|.|+.. .++|||||+|++.++|++||..|||..|+|++|.|+++..
T Consensus 37 p~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 37 PEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp SCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 45667889999999999 9999998632 3679999999999999999999999999999999999753
No 108
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-13 Score=105.27 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCC--CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNL--ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~--~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.++..++||+++|++|| |..|.|+.+. ++.++|||||+|.+.++|++|+ .|+|..|.|+.|.|+++..
T Consensus 28 p~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~ 97 (100)
T 2j76_E 28 PYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ 97 (100)
T ss_dssp SSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred CCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence 34456789999999999 9999998664 6889999999999999999999 8999999999999999864
No 109
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.36 E-value=8.9e-13 Score=107.18 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeE-EEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGN-VYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~-afVeF~~~~dA~~A~~~lnG~~~~G--R~I~ve~s~~~~ 98 (272)
.|..++++|+++|++||+|++|.|+... +|| |||+|.+.++|++|++.|||..|.| ++|.|+|+....
T Consensus 37 ~~~vte~~L~~lFs~yG~V~~V~i~~~~----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 37 FYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp CSCCCHHHHHHHHTTSSCEEEEEEEEET----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred CCCCCHHHHHHHHhCcCCEEEEEEEcCC----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4667888999999999999999987532 477 9999999999999999999999988 999999997654
No 110
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.6e-13 Score=106.47 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhccCCe-EEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEI-ESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I-~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.|+++++||+++|++||.| ..|.|+.+.++.++|||||+|.+.++|++||.. ||..|.|++|.|.++....
T Consensus 24 p~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 24 PFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp CTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred CCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 4567788999999999999 889998766888999999999999999999986 9999999999999986543
No 111
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=6.3e-13 Score=101.50 Aligned_cols=67 Identities=25% Similarity=0.299 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.+++||+++|++||.| .|+...++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 25 ~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 25 YSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp TTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 345678999999999988 4555566788999999999999999999999999999999999998654
No 112
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.36 E-value=9.4e-13 Score=101.11 Aligned_cols=63 Identities=21% Similarity=0.399 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+.+++||+++|++||+|+.|.|+. |||||+|.+.++|++|+..|+|..|.|++|.|+|+....
T Consensus 22 ~~t~~~l~~~F~~~G~i~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 22 TVTEEILEKAFSQFGKLERVKKLK-------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEC-------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence 345678999999999999999984 699999999999999999999999999999999986543
No 113
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=2.8e-13 Score=103.44 Aligned_cols=65 Identities=23% Similarity=0.391 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.++++|+++|++||+|+.|.|+.+ ++|||||+|.+.++|++|+..|+|..|.|++|.|+++....
T Consensus 12 ~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 12 AGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 456789999999999999999865 56999999999999999999999999999999999986543
No 114
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.36 E-value=4.5e-13 Score=118.14 Aligned_cols=72 Identities=19% Similarity=0.211 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHhccC--CeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 26 EHFEDFYEDLFEELNKYG--EIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG--~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
..|+++++||+++|++|| +|+.|.|+.+ .++.++|||||+|++.++|++||+.|||..|.|++|.|.|+...
T Consensus 76 L~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 76 LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred CCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 356788999999999999 9999999865 57899999999999999999999999999999999999998643
No 115
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1e-13 Score=102.54 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 30 DFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
..+++|+++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|+.|+|.+..
T Consensus 17 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 17 TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 355789999999999999999855 567889999999999999999999999999999999887753
No 116
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=8.7e-13 Score=99.14 Aligned_cols=62 Identities=19% Similarity=0.387 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+.++++|+++|++||+|+.|.|+. +||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 21 ~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 21 TCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp SCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 345678999999999999999985 59999999999999999999999999999999998654
No 117
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=8.3e-13 Score=98.87 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+.++++|+++|++||.|..|.|+. |||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 20 ~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 20 ACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 345678999999999999999985 59999999999999999999999999999999998654
No 118
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.35 E-value=3.4e-13 Score=109.38 Aligned_cols=71 Identities=20% Similarity=0.404 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.+++||+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 56 p~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 56 TYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp CSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 456788999999999999999999855 46788999999999999999999999999999999999998654
No 119
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.35 E-value=7.8e-13 Score=103.21 Aligned_cols=64 Identities=27% Similarity=0.506 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.+++||+++|++||.|+.|.|+ +|||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 40 p~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 40 PLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 4566788999999999999999998 489999999999999999999999999999999998654
No 120
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=8.7e-13 Score=97.32 Aligned_cols=61 Identities=20% Similarity=0.329 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEee
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFS 94 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~l-nG~~~~GR~I~ve~s 94 (272)
..++++|+++|++||+|..|.|+.. +|||||+|.+.++|++|+..| +|..|.|++|.|+|+
T Consensus 23 ~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 23 TITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 3556789999999999999999863 589999999999999999999 999999999999996
No 121
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.35 E-value=8.2e-13 Score=111.36 Aligned_cols=69 Identities=19% Similarity=0.232 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G--R~I~ve~s~~~~ 98 (272)
.|..++++|+++|++||+|++|.|.... ..|||||+|++.++|++|++.|||..|.| ++|.|+|+....
T Consensus 55 ~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 55 FYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp CSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 5667888999999999999999997532 46899999999999999999999999965 999999987653
No 122
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.35 E-value=4.7e-13 Score=106.77 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
++.+++||+++|++||+|+.|.|. .++|||||+|.+.++|++|+..|+|..|.|++|.|+|+.....
T Consensus 47 l~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 47 EDMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp SSCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 467889999999999999999997 3469999999999999999999999999999999999876543
No 123
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.9e-12 Score=100.33 Aligned_cols=65 Identities=18% Similarity=0.294 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+...+++|+++|++||.|..|.|+.. +|||||+|.+.++|++|+..|+|..|.|++|.|.|+...
T Consensus 35 ~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 35 SGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 34567899999999999999999865 589999999999999999999999999999999998653
No 124
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.35 E-value=1.9e-12 Score=105.16 Aligned_cols=68 Identities=19% Similarity=0.308 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
+..++++|.++|++||.|..|.|+.+ .++.++|+|||+|.+.++|.+|+..|||..|+|++|.|.|+.
T Consensus 97 ~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 97 VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 34566899999999999999999855 678899999999999999999999999999999999999975
No 125
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.35 E-value=3.9e-13 Score=109.82 Aligned_cols=71 Identities=20% Similarity=0.110 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhccCC---eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 26 EHFEDFYEDLFEELNKYGE---IESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~---I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
-.|+++++||+++|++||. |..|.|+.+..+.++|||||+|++.++|++||+ |||..|.|+.|.|.++...
T Consensus 52 Lp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 52 LPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp CCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred CCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 4778899999999999999 899999876668899999999999999999999 9999999999999997543
No 126
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=7.3e-13 Score=103.72 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.++++|+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++||.. +|..|.|+.|.|+++...
T Consensus 36 p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~ 106 (116)
T 1x4b_A 36 SFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR 106 (116)
T ss_dssp TTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence 567888999999999999999999865 5688899999999999999999997 999999999999998654
No 127
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=7.5e-13 Score=102.27 Aligned_cols=70 Identities=21% Similarity=0.223 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhccCC-eEEEEEe-eC-CCCCceeEEEEEecCHHHHHHHHHHhC--CCeeCCeeEEEEeecCCC
Q 024094 29 EDFYEDLFEELNKYGE-IESLNIC-DN-LADHMVGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~-I~~i~v~-~~-~~~~~~G~afVeF~~~~dA~~A~~~ln--G~~~~GR~I~ve~s~~~~ 98 (272)
+.++++|.++|++||. |..|.|+ .+ .++.++|||||+|.+.++|+.|+..|+ +..|.|++|.|+|+....
T Consensus 19 ~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 19 MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence 4456789999999998 9999997 33 456889999999999999999999996 599999999999986543
No 128
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.35 E-value=3.1e-12 Score=97.71 Aligned_cols=61 Identities=26% Similarity=0.403 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+..+++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|+|..|.|++|.|+|+..
T Consensus 34 ~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 34 NVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 45678999999999999999995 48999999999999999999999999999999999864
No 129
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=5.8e-13 Score=103.80 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC--eeCCeeEEEEeecCCCc
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGR--FYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~--~~~GR~I~ve~s~~~~~ 99 (272)
++.+++||+++|++||.|+.|.|+.. +|||||+|++.++|.+|++.|++. .|.|++|.|+|+.....
T Consensus 25 ~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 25 ESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp SSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 44566899999999999999998853 589999999999999999999765 59999999999876544
No 130
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.35 E-value=9.3e-13 Score=102.85 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
..+++||.++|++||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|+|+..
T Consensus 19 ~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 19 KITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3456789999999999999999853 34589999999999999999999999999999999999864
No 131
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.35 E-value=1.1e-12 Score=105.79 Aligned_cols=67 Identities=18% Similarity=0.237 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeE-EEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGN-VYVQFREEEQAARALKSLSGRFYAG--RPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~-afVeF~~~~dA~~A~~~lnG~~~~G--R~I~ve~s~~~~ 98 (272)
.|..++++|+++|++||.|++|.|+.. .|| |||+|++.++|.+|+++|||..|.| ++|.|+|+....
T Consensus 34 ~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 34 LYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp CSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 456677899999999999999999763 286 9999999999999999999999988 699999987653
No 132
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.34 E-value=4e-13 Score=101.57 Aligned_cols=64 Identities=22% Similarity=0.484 Sum_probs=56.5
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+.|.++|++||.|..|.|+. ++.++|||||+|.+.++|+.|+..|+|..|.|++|.|+|+....
T Consensus 27 ~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 27 KSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp HHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred HHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 35559999999999999974 34567999999999999999999999999999999999987643
No 133
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=5.5e-13 Score=101.79 Aligned_cols=64 Identities=19% Similarity=0.278 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
++.++++|+++|++||.|+.|.|+. .+|||||+|.+.++|++|+..|||..|.|+.|.|+|+..
T Consensus 37 ~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 37 HFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred cccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 4567899999999999999999983 359999999999999999999999999999999999753
No 134
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.3e-12 Score=98.69 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++..++||+++|++||+|+.|.|+.+ .++.++|||||+|.+.++|++|+. ++..|.|++|.|+|+...
T Consensus 25 ~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 25 WKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp SSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTT
T ss_pred CcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCC
Confidence 34567899999999999999999865 568899999999999999999998 578999999999998653
No 135
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=7.6e-13 Score=100.81 Aligned_cols=64 Identities=19% Similarity=0.244 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
...+++|+++|++||+|+.|.|+.. +|||||+|.+.++|++|++.|+|..|.|++|.|+|+...
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 26 DITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 4566789999999999999999854 589999999999999999999999999999999998653
No 136
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.33 E-value=1.4e-12 Score=101.75 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.++++|+++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|+..| |..|+|+.|.|+++...
T Consensus 34 p~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 34 SWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPR 104 (109)
T ss_dssp CTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCC
T ss_pred CCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCC
Confidence 456788999999999999999999855 46888999999999999999999976 59999999999998653
No 137
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2.8e-13 Score=98.04 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 30 DFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
..++||+++|++||+|..|.|+.+ .++.++|+|||+|.+.++|++|+..|+ ..++|++|.|+++
T Consensus 12 ~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 12 TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 345689999999999999999865 467889999999999999999999999 9999999999986
No 138
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.33 E-value=1.9e-12 Score=106.41 Aligned_cols=67 Identities=13% Similarity=0.284 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
..+++||.++|++||+|..|.|+.+ .++.++|+|||+|.+.++|.+|+..|||..|+|++|.|+|+.
T Consensus 105 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 105 YLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 4467899999999999999999866 478899999999999999999999999999999999999973
No 139
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.32 E-value=8.3e-13 Score=100.28 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
..++++|.++|++||+|..|.|. +|||||+|.+.++|+.|+..|+|..|.|++|.|+|+...
T Consensus 22 ~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 83 (96)
T 2kvi_A 22 NVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN 83 (96)
T ss_dssp CCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence 44567999999999999999996 489999999999999999999999999999999998654
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.32 E-value=2.1e-13 Score=109.54 Aligned_cols=71 Identities=18% Similarity=0.287 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhccCCeEE--EEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCC----eeCCeeEEEEeecCC
Q 024094 26 EHFEDFYEDLFEELNKYGEIES--LNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGR----FYAGRPIIVDFSPVT 97 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~--i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~----~~~GR~I~ve~s~~~ 97 (272)
-.++.++++|+++|++||.|.. |.|+.+. ++.++|||||+|.+. +|.+|+..|||. .|+|++|.|+|+...
T Consensus 31 L~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 31 LNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp CCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred CCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence 3566778999999999999976 9888654 789999999999999 999999999999 999999999998653
No 141
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=8.3e-13 Score=100.33 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.++++|+++|++||.|. +.|+. +.++|||||+|.+.++|++|+..|||..|.|++|.|+++...
T Consensus 28 ~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 28 PRDARVSDLKRALRELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CTTCCHHHHHHHHHHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCcCcHHHHHHHHHhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 34567789999999999997 66654 245799999999999999999999999999999999998654
No 142
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=9.2e-13 Score=102.72 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhccCCe----EEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEI----ESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I----~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.++.++++|.++|++||.| ..+.+. ++.++|||||+|.+.++|++|+..|+|..|.|++|.|+|+....
T Consensus 34 p~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 34 SPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp CTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred CCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence 3456778999999999999 445444 56788999999999999999999999999999999999987543
No 143
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.7e-12 Score=97.67 Aligned_cols=63 Identities=27% Similarity=0.456 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhcc--CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKY--GEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kf--G~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+..++++|+++|++| |.|..|.++. |||||+|.+.++|++|+..|||..|.|++|.|+|+...
T Consensus 25 ~~~t~~~l~~~F~~~g~g~v~~~~~~~-------g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 25 LSTSEEMIEKEFNNIKPGAVERVKKIR-------DYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp TTCCHHHHHHHHHTTSTTCEEEEEECS-------SEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCCCHHHHHHHHHhcCCcceEEEEEeC-------CeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 345668999999999 9999998764 79999999999999999999999999999999998654
No 144
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.31 E-value=2.9e-12 Score=109.03 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.+++||+++|++||.|+.|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|.|++|.|.|+...
T Consensus 135 ~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 135 QDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp TTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred CcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 34678899999999999999999865 56888999999999999999999999999999999999998654
No 145
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.31 E-value=2.4e-12 Score=99.95 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=57.1
Q ss_pred HHH-HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFE-DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd-~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.++ ..++||+++|++||+|+.|.| .+|||||+|++.++|++|+..|+|..|.|++|.|+|+..
T Consensus 36 ~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 36 NTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 344 567899999999999999999 358999999999999999999999999999999999864
No 146
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=3.7e-12 Score=98.78 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.++++|+++|++||+|+.|.|+. .++|||||+|++.++|+.|++.+++ +.|++|+|.|+....
T Consensus 29 ~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 29 YSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 45789999999999999999983 5679999999999999999998655 689999999986543
No 147
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.31 E-value=5.7e-12 Score=102.49 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
..+++|.++|++||+|..|.|+... ++.++|+|||+|.+.++|..|+..|+|..+.|++|.|.++....
T Consensus 14 ~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 83 (167)
T 1fxl_A 14 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 83 (167)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Confidence 3457899999999999999998664 78899999999999999999999999999999999999987543
No 148
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.31 E-value=8.2e-13 Score=99.78 Aligned_cols=66 Identities=21% Similarity=0.321 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.+..+++||+++|++||.|..| ..++.++|||||+|.+.++|++|+..|+|..|.|++|.|+++..
T Consensus 25 ~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 25 SFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp CSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 3445678999999999998766 34567889999999999999999999999999999999999854
No 149
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.30 E-value=3.7e-12 Score=104.55 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC---CeeEEEEee
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA---GRPIIVDFS 94 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~---GR~I~ve~s 94 (272)
.+..++++|+++|++||.|..|.|+.+.++.++|||||+|.+.++|.+|++.|||..+. |++|.|.|+
T Consensus 104 ~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 104 SKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 44567789999999999999999998777889999999999999999999999998776 499999997
No 150
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.30 E-value=5.7e-12 Score=102.38 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+.++++|.++|++||+|.+|.|+.+..+.++|+|||+|.+.++|.+|+..|+|..+.|++|.|.++...
T Consensus 11 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 11 AITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 345689999999999999999997777788999999999999999999999999999999999998543
No 151
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=7.1e-13 Score=106.50 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhccCCe----EEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCchh
Q 024094 26 EHFEDFYEDLFEELNKYGEI----ESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFRE 101 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I----~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r~ 101 (272)
..|+++++||+++|++||+| ..|.|+.+.++.++|||||+|++.++|++||+. ++..|.|+.|.|..+....+..
T Consensus 31 Lp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~~ 109 (123)
T 2dha_A 31 LPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQQ 109 (123)
T ss_dssp CCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHHHH
T ss_pred CCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHHH
Confidence 36778889999999999986 689998777889999999999999999999995 9999999999999986555443
No 152
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.30 E-value=1.7e-13 Score=104.70 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++.++++|+++|++||.|..+.|.+..++.++|||||+|.+.++|++|++ |||..|.|+.|.|+++...
T Consensus 26 p~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 26 NPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred CCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence 345677899999999999988444455567788999999999999999999 9999999999999998654
No 153
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.30 E-value=3.4e-12 Score=110.07 Aligned_cols=69 Identities=20% Similarity=0.326 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.+..++++|.++|++||.|+.|.|+.+. +.++|||||+|.+.++|++|++.|||..|+|++|.|.++..
T Consensus 112 ~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 112 DKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 3456778999999999999999998553 34689999999999999999999999999999999999864
No 154
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=3.8e-12 Score=97.93 Aligned_cols=60 Identities=23% Similarity=0.359 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcc-CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKY-GEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kf-G~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+++..+|+++|++| |+|++| ++ |+|||+|.+.++|..|++.|||..|.||+|+|.|++..
T Consensus 24 ~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 24 KSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp HHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred HHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCC
Confidence 45667899999999 599998 22 99999999999999999999999999999999998754
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.29 E-value=1.7e-12 Score=97.00 Aligned_cols=64 Identities=17% Similarity=0.358 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
..++||+++|++| .|..|.|. .++|||||+|.+.++|++|++.|||..|.|++|.|+|++...+
T Consensus 17 ~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 17 SNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp CCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCce
Confidence 4567899999999 99999985 4679999999999999999999999999999999999976554
No 156
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.96 E-value=2.5e-13 Score=106.56 Aligned_cols=72 Identities=21% Similarity=0.372 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhccCCeEE--------EEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIES--------LNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~--------i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.++..++||+++|++||.|.. |.|+.+ .++.++|||||+|.+.++|++|+..|||..|.|++|.|+++...
T Consensus 16 p~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 16 GENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRR 95 (116)
Confidence 456788899999999999998 878754 56788999999999999999999999999999999999998654
Q ss_pred C
Q 024094 98 D 98 (272)
Q Consensus 98 ~ 98 (272)
.
T Consensus 96 ~ 96 (116)
T 2lcw_A 96 A 96 (116)
Confidence 3
No 157
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.29 E-value=4e-13 Score=104.25 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhccCC---eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGE---IESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~---I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.|+++++||+++|+.||. |..|.|+.+..+.++|||||+|.+.++|++|+. |+|..|.|+.|.|.++....
T Consensus 20 p~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 20 PWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp CSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHH
T ss_pred CCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHH
Confidence 445667899999999998 899999876668899999999999999999999 99999999999999986433
No 158
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.28 E-value=2e-12 Score=105.71 Aligned_cols=66 Identities=26% Similarity=0.384 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.++.++++|.++|++||.|..|.|+.+ ++|||||+|.+.++|..|+..|||..|.|++|.|+|+..
T Consensus 82 ~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 82 GNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp CSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 345667899999999999999999865 469999999999999999999999999999999999864
No 159
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.28 E-value=4.9e-13 Score=109.66 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCc
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDF 99 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~ 99 (272)
..|+++++||+++|++|| |+.|.|+.+..+.++|||||+|++.++|++|| .||+..|.|+.|.|.++.....
T Consensus 54 Lp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 54 LPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred CCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 467788899999999999 77999987666889999999999999999999 7999999999999999876544
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.28 E-value=5.5e-12 Score=103.05 Aligned_cols=66 Identities=24% Similarity=0.379 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCC-CCCceeEEEEEecCHHHHHHHHHHhCCCeeCC--eeEEEEee
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNL-ADHMVGNVYVQFREEEQAARALKSLSGRFYAG--RPIIVDFS 94 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~-~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G--R~I~ve~s 94 (272)
..++++|.++|++||.|..|.|+.+. ++.++|+|||+|.+.++|.+|+..|||..|.| ++|.|.|+
T Consensus 100 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 100 TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 45668999999999999999998654 78889999999999999999999999999988 99999985
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=4.8e-12 Score=95.52 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhccCCeEEE-EEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESL-NICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i-~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.+..++++|+++|++||+|+.| .|+.+.. .|.|||+|.+.++|++|+..|||..|.|++|.|+++...
T Consensus 24 p~~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 24 PPHLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CSSSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 3455678999999999999999 4664322 255999999999999999999999999999999998754
No 162
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.28 E-value=6.4e-13 Score=95.78 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 30 DFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
.++++|+++|++||+|..|.|+.+ .++.++|||||+|.+.++|++|+. ++|..+.|+.|.|.++
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 11 TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 345789999999999999999754 557889999999999999999998 5999999999999874
No 163
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.28 E-value=1.9e-12 Score=105.08 Aligned_cols=71 Identities=25% Similarity=0.356 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhccCCeEEE------EEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESL------NICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i------~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.+..++++|.++|++||.|..| .|....++.++|||||+|.+.++|.+|+..|||..|.|++|.|+|+...
T Consensus 54 p~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 54 AKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp CTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred CCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 3567789999999999999874 1222235778999999999999999999999999999999999998654
No 164
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=8.8e-13 Score=104.50 Aligned_cols=66 Identities=17% Similarity=0.284 Sum_probs=57.5
Q ss_pred HHH-HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC--CCeeCCeeEEEEeecCC
Q 024094 27 HFE-DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS--GRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd-~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln--G~~~~GR~I~ve~s~~~ 97 (272)
.++ .+++||.++|++||+|.+|.|+. .+|||||+|++.++|++|++.|+ +..|.|++|.|+|+...
T Consensus 34 p~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 34 PHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp CCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 445 67789999999999999999975 35899999999999999999886 45699999999998653
No 165
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.9e-12 Score=96.34 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhccCC-eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC-CeeCCeeEEEEeecCC
Q 024094 30 DFYEDLFEELNKYGE-IESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG-RFYAGRPIIVDFSPVT 97 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~-I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG-~~~~GR~I~ve~s~~~ 97 (272)
.+++||+++|++||. |..+.|.. +|||||+|.+.++|++|+..||| ..|.|++|.|+|+...
T Consensus 20 ~t~~~l~~~F~~~G~vv~~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 83 (93)
T 2cqh_A 20 VTADDLRQLFGDRKLPLAGQVLLK------SGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK 83 (93)
T ss_dssp CCHHHHHHHHHHTTCCCSSCEEEE------TTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred CCHHHHHHHHHHcCCceEEEEEcC------CCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence 456789999999999 66666643 58999999999999999999999 9999999999998654
No 166
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.27 E-value=2.9e-12 Score=97.88 Aligned_cols=66 Identities=12% Similarity=0.206 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+..+++|.++|++||.|..|.|+.+.++.++|||||+|.+.++|++|+. +|..|+|+.|.|.++..
T Consensus 20 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 20 RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4456789999999999999999876688899999999999999999998 99999999999999754
No 167
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.27 E-value=6.3e-12 Score=105.52 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.+...+++|+++|++||.|..|.|+.+ .++.++|||||+|.+.++|.+|+..|||..|+|++|.|+|+...
T Consensus 123 ~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 194 (198)
T 2yh0_A 123 PNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 194 (198)
T ss_dssp CTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 345677899999999999999999866 47889999999999999999999999999999999999998643
No 168
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.27 E-value=7.3e-12 Score=102.29 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
..+++|.++|++||+|..|.|+.. .++.++|+|||+|.+.++|.+|+..|+|..+.|++|.|.++....
T Consensus 15 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 84 (168)
T 1b7f_A 15 MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG 84 (168)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc
Confidence 345789999999999999999854 578889999999999999999999999999999999999986543
No 169
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.1e-12 Score=95.38 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+.+++||.++|++||+|..| +.+..++. ||||+|.+.++|++|+. |+|..|+|++|.|.++....
T Consensus 19 ~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 19 GVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp TCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 45668999999999999998 55544443 99999999999999999 99999999999999876443
No 170
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.25 E-value=4.6e-12 Score=103.60 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.+..++++|.++|++||.|..|.|+.+ .++.++|+|||+|.+.++|.+|++ |+|..|.|++|.|.|+..
T Consensus 96 p~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 96 GPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 345678899999999999999999855 568899999999999999999998 999999999999999864
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.24 E-value=1.2e-11 Score=100.63 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCee--EEEEee
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRP--IIVDFS 94 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~--I~ve~s 94 (272)
..++++|.++|++||.|..|.|+.. .++.++|+|||+|.+.++|.+|++.|||..|.|+. |.|.|+
T Consensus 99 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 99 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 4466899999999999999999855 46888999999999999999999999999999975 888875
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.24 E-value=1.5e-11 Score=106.01 Aligned_cols=72 Identities=25% Similarity=0.475 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.++.++++|+++|++||+|++|.|+.+ .++.++|||||+|.+.++|++|+..|+|..+.|+.|.|.++....
T Consensus 24 p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 24 HPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred CCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 345667899999999999999999854 568899999999999999999999999999999999999986533
No 173
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=94.34 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEee-CCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICD-NLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~-~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.+++||+++|++|+ .|.|+. ..++.++|||||+|.+.++|++||..|||..|.|++|.|+|+...
T Consensus 25 ~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 25 EDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp TTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 3456678999999885 455553 356788999999999999999999999999999999999998653
No 174
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.20 E-value=2.2e-11 Score=104.57 Aligned_cols=68 Identities=18% Similarity=0.336 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
.++++.++|.++|++||+|..|.|+...++.++|||||+|++.++|++|+..++ ..|+|++|.|.+..
T Consensus 118 p~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 118 PTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKD 185 (193)
T ss_dssp CTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETT
T ss_pred CCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhH
Confidence 466788999999999999999999987778899999999999999999998664 59999999999854
No 175
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.20 E-value=1.6e-11 Score=106.27 Aligned_cols=63 Identities=21% Similarity=0.333 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
..+++|+++|++||.|.+|.|+.+. +|||||+|.+.++|+.||+.|||..|.|++|.|.|+..
T Consensus 17 ~~~~~L~~~F~~~G~v~~v~i~~~~----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 17 MNCDRVFNVFCLYGNVEKVKFMKSK----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCHHHHHHHHTTTSCEEEEEECTTS----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCHHHHHHHHHhcCCeEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 3456899999999999999998542 59999999999999999999999999999999999864
No 176
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.20 E-value=2.6e-11 Score=101.60 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.++.++++|.++|++||.|+.|.|+.+ .++.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.|+....
T Consensus 113 p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 113 KEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp TTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred CCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 345677899999999999999999865 4688999999999999999999986 8999999999999986543
No 177
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.20 E-value=4e-11 Score=106.92 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=64.8
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCCch
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTDFR 100 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~~r 100 (272)
.++||.++|++||.|..|.|+.+.++.++|+|||+|.+.++|.+|+..|||..|.|++|.|.|+....-+
T Consensus 198 ~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 198 DVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp CHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCH
T ss_pred CHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcc
Confidence 5689999999999999999998778889999999999999999999999999999999999999776543
No 178
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.20 E-value=2.5e-11 Score=108.11 Aligned_cols=64 Identities=14% Similarity=0.281 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee------------CCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY------------AGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~------------~GR~I~ve~s~~ 96 (272)
..++++|.++|++||+|++|.|+. .+|||||+|.+.++|+.|+.+|+|..| .|++|.|.|+..
T Consensus 154 ~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 154 AQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred cCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 347999999999999999999985 369999999999999999999999999 899999999865
Q ss_pred C
Q 024094 97 T 97 (272)
Q Consensus 97 ~ 97 (272)
.
T Consensus 229 ~ 229 (240)
T 3u1l_A 229 D 229 (240)
T ss_dssp -
T ss_pred C
Confidence 3
No 179
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.19 E-value=9.4e-12 Score=101.11 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEe-eCCCCCceeEEEEEecC----HHH----HHHHHH--HhCCCeeCCeeEEEEeecC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNIC-DNLADHMVGNVYVQFRE----EEQ----AARALK--SLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~-~~~~~~~~G~afVeF~~----~~d----A~~A~~--~lnG~~~~GR~I~ve~s~~ 96 (272)
|.+.+++|.++|+.||+|.+|.++ ++.++.++|||||+|.+ +.+ |.+|+. .|+|..|+|++|.|.+-..
T Consensus 16 ~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 16 TNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp CCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 344567999999999999999997 66789999999999995 333 889988 8999999999999999654
Q ss_pred CC
Q 024094 97 TD 98 (272)
Q Consensus 97 ~~ 98 (272)
..
T Consensus 96 g~ 97 (136)
T 2j8a_A 96 SI 97 (136)
T ss_dssp TH
T ss_pred cH
Confidence 33
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.19 E-value=7.3e-12 Score=101.08 Aligned_cols=69 Identities=23% Similarity=0.215 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHhccCCeE--EEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIE--SLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~--~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
-.|+++++||+++|++| .|+ .|.|+.+..+.++|||||+|++.++|++||+ +++..|.|+.|.|..+..
T Consensus 50 Lp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 50 LPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp CCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECH
T ss_pred CCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCH
Confidence 46788899999999999 676 8999876668899999999999999999998 578999999999988753
No 181
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.18 E-value=2.8e-11 Score=102.94 Aligned_cols=72 Identities=19% Similarity=0.293 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
.++.++++|+++|++||+|..|.|+.. .++.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.++....
T Consensus 37 p~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 37 YYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred CCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 345678899999999999999999754 467889999999999999999999999999999999999876544
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.18 E-value=1.9e-11 Score=100.90 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+..++++|.++|++||.|..| ..++.++|+|||+|.+.++|.+|+..|||..|+|++|.|+|+..
T Consensus 109 ~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 109 FNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp SSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred CCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 345678999999999999766 55677889999999999999999999999999999999999864
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.17 E-value=6.2e-11 Score=106.07 Aligned_cols=69 Identities=23% Similarity=0.286 Sum_probs=61.7
Q ss_pred HH-HHHHHHHHHHhccCCeEEEEEeeCCC--CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FE-DFYEDLFEELNKYGEIESLNICDNLA--DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd-~~~eDL~~~F~kfG~I~~i~v~~~~~--~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+. ..+++|.++|++||.|+.|.|+.... +.++|||||+|.+.++|.+|+ .|||..|.|++|.|.|+..+
T Consensus 220 ~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 220 TELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred cccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 44 66789999999999999999987655 888999999999999999999 99999999999999998653
No 184
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.16 E-value=5.7e-11 Score=99.50 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
.++.++++|.++|++||+|.+|.|+.+ .++.++|||||+|.+.++|.+|+.. +|..|.|+.|.|.++..
T Consensus 22 p~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 22 SFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred CCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccC
Confidence 345667899999999999999999865 4688899999999999999999985 99999999999999754
No 185
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.15 E-value=3.3e-11 Score=88.96 Aligned_cols=59 Identities=15% Similarity=0.369 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcc----C-------CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 29 EDFYEDLFEELNKY----G-------EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 29 d~~~eDL~~~F~kf----G-------~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
+..+++|+++|++| | +|.+|.|... +|||||+|.+.++|++|+ .|||..|.|++|.|+.
T Consensus 17 ~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 17 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 34567899999999 8 9999999854 599999999999999999 9999999999999974
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.14 E-value=6.8e-11 Score=105.30 Aligned_cols=62 Identities=23% Similarity=0.512 Sum_probs=56.4
Q ss_pred HHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 34 DLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 34 DL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.|.++|++||.|+.|.|+. ++..+|||||+|.+.++|.+|+..|||..|.|+.|.|+|+...
T Consensus 29 ~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 90 (282)
T 3pgw_A 29 SLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 90 (282)
T ss_pred HHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccC
Confidence 4669999999999999986 5668899999999999999999999999999999999998543
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.12 E-value=8.9e-11 Score=104.53 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEeec
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDFSP 95 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~-GR~I~ve~s~ 95 (272)
.++.++++|+++|++||.|+.|.|+... .|||||+|.+.++|.+|+..|||..|. |++|+|+|+.
T Consensus 216 ~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 216 PEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 4567889999999999999999998543 489999999999999999999999999 9999999974
No 188
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.10 E-value=8.6e-11 Score=88.40 Aligned_cols=62 Identities=19% Similarity=0.256 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCee--CCeeEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFY--AGRPIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~--~GR~I~ve~s~~ 96 (272)
.|+.+++||+++|++||+|++|.|+.. ++|||||+|++.++|++ |+|..+ .|+.|.|.++..
T Consensus 20 p~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 20 TEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp CTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 345567899999999999999999863 57999999999999883 566654 599999999764
No 189
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2e-10 Score=87.53 Aligned_cols=60 Identities=20% Similarity=0.488 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+++..+|.+.|++||+|..+.|+.. .+||+|.+.++|.+|+. |||..+.|+.|+|.+.+.
T Consensus 26 ~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 26 DALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 4677899999999999999999973 48999999999999998 999999999999999753
No 190
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.9e-11 Score=93.93 Aligned_cols=66 Identities=12% Similarity=0.174 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEe-eCCC---CCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNIC-DNLA---DHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~-~~~~---~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
++.++++|+++|++||+|. +.++ +..+ +.++|||||+|++.++|++|+++|++ ++|+.|.+..+..
T Consensus 18 ~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 18 PDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCVSSPT 87 (114)
T ss_dssp TTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEECCSS
T ss_pred CCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEeccCCC
Confidence 3456789999999999999 6665 3334 57899999999999999999999953 7888888876543
No 191
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.07 E-value=1.7e-10 Score=94.55 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCC-C--CceeEEEEEecCHHHHHHHHHHhCCCeeC---CeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLA-D--HMVGNVYVQFREEEQAARALKSLSGRFYA---GRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~-~--~~~G~afVeF~~~~dA~~A~~~lnG~~~~---GR~I~ve~s~~ 96 (272)
+.++++|+++|++||+|.+|.|+.... + .++|||||+|.+.++|++|+..|+|..+. +++|.+.++..
T Consensus 14 ~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~ 87 (175)
T 3nmr_A 14 TWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADS 87 (175)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGG
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccc
Confidence 345678999999999999999985543 3 78999999999999999999999998876 67888887643
No 192
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.06 E-value=1.1e-10 Score=101.58 Aligned_cols=65 Identities=28% Similarity=0.385 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+..+++|+++|++||.|+.|.|+... +|||||+|.+.++|++|+..|+|..|.|++|.|.++...
T Consensus 46 ~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 46 RVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp TCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred cCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 56778999999999999999998654 589999999999999999999999999999999998643
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.06 E-value=2.9e-10 Score=101.28 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
..++++|.++|++||.|..|.|+.+ .++.++|+|||+|.+.++|..|+..|+|..|.|++|.|.|+...
T Consensus 106 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 106 SLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred cCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 4466799999999999999998754 57889999999999999999999999999999999999998643
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.04 E-value=2.7e-10 Score=101.19 Aligned_cols=69 Identities=23% Similarity=0.328 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHh-CCCeeC---CeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSL-SGRFYA---GRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~l-nG~~~~---GR~I~ve~s~~~ 97 (272)
..+.++|.++|++||.|..|.|+.+.++.++|||||+|.+.++|.+|+..| +|..+. +++|.|.++...
T Consensus 107 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 107 VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 456689999999999999999987678889999999999999999999999 555555 999999998653
No 195
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.03 E-value=1.4e-10 Score=97.93 Aligned_cols=66 Identities=21% Similarity=0.167 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~-GR~I~ve~s~~~ 97 (272)
+..++++|.++|++|| .|..|.|+... +|+|||+|.+.++|.+|+..|||..|. |++|.|.|+..+
T Consensus 130 ~~~~~~~l~~~f~~~G~~v~~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 130 PSVSEEDLKVLFSSNGGVVKGFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TTCCHHHHHHHHHHTTSCCCEEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCCHHHHHHHHHHcCCCceEEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 3456789999999999 99999996532 589999999999999999999999999 999999998653
No 196
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.01 E-value=2.8e-10 Score=101.73 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 28 FEDFYEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
++.++++|.++|++|| .|..|.|+....+.++|||||+|.+.++|.+|+..|+|..|.|++|.|.++....
T Consensus 127 ~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 127 PSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp TTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 3456788999999999 9999999876667789999999999999999999999999999999999986543
No 197
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.00 E-value=3.3e-10 Score=98.57 Aligned_cols=67 Identities=21% Similarity=0.164 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC-CeeEEEEeecCC
Q 024094 27 HFEDFYEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA-GRPIIVDFSPVT 97 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~-GR~I~ve~s~~~ 97 (272)
.++.++++|+++|++|| .|..|.|+.. .+|+|||+|.+.++|.+|+..|+|..|. |++|.|.|+...
T Consensus 160 p~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 160 PPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 34556789999999999 9999999642 2589999999999999999999999999 999999998643
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.00 E-value=2.5e-10 Score=96.30 Aligned_cols=63 Identities=29% Similarity=0.411 Sum_probs=57.2
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.+++|+++|++||.|..|.|+... +|||||+|.+.++|+.|+..|+|..|.|++|.|.++...
T Consensus 17 ~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 17 TPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 457899999999999999998654 589999999999999999999999999999999998653
No 199
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.98 E-value=3.1e-10 Score=92.59 Aligned_cols=66 Identities=18% Similarity=0.294 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeC-CCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDN-LADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~-~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+.++++|.++|++||+|.+|.|+.+ .++.++|||||+|.+.++|++|+.. +..+.|+.|.|.++..
T Consensus 14 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 14 DTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp TCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 3456789999999999999999865 5688999999999999999999984 6789999999998754
No 200
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.98 E-value=4e-10 Score=105.26 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC---Ce--eEEEEeecC
Q 024094 27 HFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA---GR--PIIVDFSPV 96 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~---GR--~I~ve~s~~ 96 (272)
.|..+++||+++|++||+|+.|.|+. .+|||||+|++.++|++||++|||+.+. |+ +|.|.|+..
T Consensus 29 ~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 29 GNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 98 (345)
T ss_dssp GGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSS
T ss_pred CCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeec
Confidence 57788999999999999999998864 3699999999999999999999999983 45 678888743
No 201
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.2e-10 Score=86.68 Aligned_cols=62 Identities=15% Similarity=0.209 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
.+++||+++|++||+|..|.|+.+ ++|||||+|.+.++|++|+. ....+.|++|.|.++...
T Consensus 17 ~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 17 MTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred CCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCC
Confidence 456789999999999999999854 56999999999999975432 133459999999998654
No 202
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.95 E-value=5.8e-10 Score=96.34 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhccCCe--EEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCe----eEEEEee
Q 024094 27 HFEDFYEDLFEELNKYGEI--ESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGR----PIIVDFS 94 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG~I--~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR----~I~ve~s 94 (272)
.++.+++||.++|++||.| ..|.|+... +...|+|||+|++.++|.+||..|||..|.|. +|+|.|+
T Consensus 132 p~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 132 PLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 4567789999999999999 899887654 34469999999999999999999999999988 5666664
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.95 E-value=6e-10 Score=98.89 Aligned_cols=66 Identities=21% Similarity=0.303 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 26 EHFEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 26 ~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
-.++.++++|.++|++||.|..|.|... +|||||+|.+.++|..|+..|+|..|.|++|.|.++..
T Consensus 30 Lp~~~te~~l~~~F~~~G~i~~v~i~~~-----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 30 LPTDITEEDFKRLFERYGEPSEVFINRD-----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CCTTCCHHHHHHHTGGGCCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 3556788999999999999999999753 58999999999999999999999999999999999854
No 204
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.95 E-value=6.9e-11 Score=97.57 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 28 FEDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 28 yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
++.+++||+++|.+||.|..+.|.+..++.++|||||+|.+.++|.+|+ .|+|..|.|++|.|.++...
T Consensus 23 ~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 23 PNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp TTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCS
T ss_pred CCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCc
Confidence 3456678888999998877755555556778899999999999999999 59999999999999998653
No 205
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=2.4e-09 Score=82.06 Aligned_cols=58 Identities=26% Similarity=0.448 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 29 EDFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 29 d~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
+++..+|.+.|+.||+|..|.|+.+ -+||+|.+.++|.+||. |||..+.|+.|+|.+-
T Consensus 35 ~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 35 EDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 5788999999999999999999974 39999999999999998 9999999999999874
No 206
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.82 E-value=4.4e-09 Score=86.06 Aligned_cols=63 Identities=14% Similarity=0.317 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHhcc----C-------CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCC
Q 024094 29 EDFYEDLFEELNKY----G-------EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVT 97 (272)
Q Consensus 29 d~~~eDL~~~F~kf----G-------~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~ 97 (272)
+.++++|.++|++| | .|.++.+... +|||||+|.+.++|.+|+ .|+|..|.|++|.|.++...
T Consensus 15 ~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~-----~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 15 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT-----TTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSC
T ss_pred ccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC-----CCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCccc
Confidence 34567889999999 7 7888877643 599999999999999999 89999999999999997543
No 207
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.79 E-value=4.5e-09 Score=87.95 Aligned_cols=62 Identities=15% Similarity=0.304 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcc----C-------CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecC
Q 024094 29 EDFYEDLFEELNKY----G-------EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 29 d~~~eDL~~~F~kf----G-------~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~ 96 (272)
+.+++||.++|++| | .|..+.+.. .+|||||+|.+.++|++|+ .|+|..|.|++|.|.++..
T Consensus 15 ~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~ 87 (198)
T 2yh0_A 15 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHD 87 (198)
T ss_dssp TCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCC
T ss_pred CCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCC
Confidence 34567899999999 5 666666643 3699999999999999999 8999999999999999754
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=2.1e-07 Score=74.50 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecC-HHHHHHHHHHh--CCCeeCCeeEEEEeecC
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFRE-EEQAARALKSL--SGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~-~~dA~~A~~~l--nG~~~~GR~I~ve~s~~ 96 (272)
++.+||+++|++||+|..|.|+...+ .|||+|.+ ..+|++|+.+| +|..|.|..+++++...
T Consensus 31 ~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 31 TCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 56789999999999999999986543 69999999 89999999999 58899999999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=6.1e-05 Score=59.09 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=47.0
Q ss_pred HHHHHHhcc-----CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEe
Q 024094 34 DLFEELNKY-----GEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDF 93 (272)
Q Consensus 34 DL~~~F~kf-----G~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~ 93 (272)
-|..+++.+ |.|..|.+...- |=|+|+|.+...|.+|.-+|+|.+|+|++|.|.=
T Consensus 37 rIr~lve~~~~i~~g~i~KI~L~pDH-----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 37 LICQFLQEEIHINEKDIRKILLVSDF-----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp HHHHHHHHHTCCCTTTCSEEEEETTT-----TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred HHHHHHhhhhccCccceeEEEEecCC-----CceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 455666677 999999887543 5799999999999999999999999999999864
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.00042 Score=53.72 Aligned_cols=63 Identities=14% Similarity=0.187 Sum_probs=54.4
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeecCCC
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSPVTD 98 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~~~~ 98 (272)
+++.++.+|..|+++......... .-+-|.|.+.++|.+|-..|++..|.|..|+|.|++...
T Consensus 23 lk~~~e~Lf~~~~~~~tF~~lkSF-----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 23 TRAKFESLFRTYDKDTTFQYFKSF-----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp HHHHHHHHHHTTCSSCEEEEETTT-----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred HHHHHHHHHHhhCcCcceeecCcc-----eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 345788899999999988777644 378999999999999999999999999999999988543
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=0.0012 Score=52.47 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCC-eeEEEEe
Q 024094 31 FYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAG-RPIIVDF 93 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~G-R~I~ve~ 93 (272)
....|...|++||.|++...... ..++.|.|.+..+|++||. .||..|+| -.|-|..
T Consensus 36 ~~~~VL~~F~~~G~Iv~~~~~~~-----~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 36 SASYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GHHHHHHHHHTTSCEEEEEECSS-----SSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred HHHHHHHHHHhhCcEEEeccCCC-----CCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 45678899999999998887432 2599999999999999998 69999986 3344444
No 212
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.12 E-value=0.0075 Score=48.55 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=47.2
Q ss_pred HHHHHHHHHhccCCeEE-EEEeeCC-------------CC-CceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEeec
Q 024094 31 FYEDLFEELNKYGEIES-LNICDNL-------------AD-HMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFSP 95 (272)
Q Consensus 31 ~~eDL~~~F~kfG~I~~-i~v~~~~-------------~~-~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s~ 95 (272)
...-|...|++||.|++ +.+.... .. ....++.|+|.+..+|.+|+. -||..|+|-.|-|....
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 34568889999999976 3222100 00 123689999999999999998 79999999877777653
No 213
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.90 E-value=0.0067 Score=48.78 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=27.4
Q ss_pred EEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC
Q 024094 47 SLNICDNLADHMVGNVYVQFREEEQAARALKSLSGR 82 (272)
Q Consensus 47 ~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~ 82 (272)
.+.|+.+.. .+.||+||+|.+.++|++|+..+++.
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhccc
Confidence 345554433 57899999999999999999988753
No 214
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.83 E-value=0.0031 Score=50.59 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=36.3
Q ss_pred CceeEEEEEecCHHHHHHHHHHh-CCCeeCCeeEEEEeecC
Q 024094 57 HMVGNVYVQFREEEQAARALKSL-SGRFYAGRPIIVDFSPV 96 (272)
Q Consensus 57 ~~~G~afVeF~~~~dA~~A~~~l-nG~~~~GR~I~ve~s~~ 96 (272)
.+.|+++|+|.+.++|++|+..| ||..++| .|.+.++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 56899999999999999999999 9999999 999998764
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.04 E-value=0.033 Score=42.63 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=33.7
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 80 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln 80 (272)
.||..+|+.||.|. |..+++. -|||.|.+.+.|..|+..|.
T Consensus 30 ~DI~~lFs~fggv~-I~WidDT------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 30 SDLYQLFSAFGNIQ-ISWIDDT------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp HHHHHHHTTTCSCC-CEEEETT------EEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCEE-EEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 59999999999764 4555543 79999999999999999764
No 216
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.82 E-value=0.053 Score=41.58 Aligned_cols=41 Identities=22% Similarity=0.484 Sum_probs=33.9
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 80 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln 80 (272)
.||..+|+.||.| .|..+++. -|||.|.+.+.|..|+..|.
T Consensus 20 ~Di~~lFs~fggv-~I~WidDT------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 20 SDLYQLFSAFGNI-QISWIDDT------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp HHHHHHTTTSEEE-EEEEEETT------EEEEEEEEECHHHHHHHHHT
T ss_pred HHHHHHHhccCCE-EEEEEcCC------eEEEEecCHHHHHHHHHhcc
Confidence 6999999999955 45555543 79999999999999999764
No 217
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=90.26 E-value=1.7 Score=32.46 Aligned_cols=65 Identities=28% Similarity=0.501 Sum_probs=44.0
Q ss_pred HHHHHHHhccCCeEEEEEeeCC---CCCceeEEEEEecCHHHHHHHHHHhCCCeeC---Ce--eEEEEeecCC
Q 024094 33 EDLFEELNKYGEIESLNICDNL---ADHMVGNVYVQFREEEQAARALKSLSGRFYA---GR--PIIVDFSPVT 97 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~---~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~---GR--~I~ve~s~~~ 97 (272)
+++++.++.+.++.-...+... ......-|||.|.+.+++..-.+.++|..|- |- +-.|||++-+
T Consensus 16 eeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP~q 88 (91)
T 1uw4_A 16 EQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPFQ 88 (91)
T ss_dssp HHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECSSC
T ss_pred HHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcCCC
Confidence 3444455556666655554332 1234578999999999999999999999983 22 3358887654
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=87.97 E-value=0.22 Score=47.87 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHH
Q 024094 30 DFYEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALK 77 (272)
Q Consensus 30 ~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~ 77 (272)
..+.+|.+.|++||+|.++.+-.... -||.|||.+.++|..++.
T Consensus 64 ~~~~~l~~y~~~~g~i~~~~~~~~~g----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 64 ISENKFLKYLSQFGPINNHFFYESFG----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp ---CHHHHHHGGGSCCCCEEEECSSS----EEEEEECC---CCHHHHS
T ss_pred CCHHHHHHHHHhcCCcceEEEEccCC----eEEEEEeCCHHHHHHHHh
Confidence 45689999999999999999986432 599999999998886654
No 219
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=87.67 E-value=0.9 Score=43.02 Aligned_cols=12 Identities=17% Similarity=0.235 Sum_probs=5.2
Q ss_pred HHHHHHHHHhcc
Q 024094 31 FYEDLFEELNKY 42 (272)
Q Consensus 31 ~~eDL~~~F~kf 42 (272)
....|...+..+
T Consensus 78 ~~~~~~~~~~~~ 89 (437)
T 3pgw_S 78 RQQEVETELKMW 89 (437)
T ss_pred HHHHHHHhhhhc
Confidence 334444444444
No 220
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.85 E-value=7 Score=29.88 Aligned_cols=53 Identities=19% Similarity=0.143 Sum_probs=40.2
Q ss_pred HHHHHHhc-c----CCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 34 DLFEELNK-Y----GEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 34 DL~~~F~k-f----G~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
-|...|++ - |+|+.|.... +-|+|+|.+...|+..++ -.-..|.+-+|.|.-.
T Consensus 24 ~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 24 LLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLA-QADHELHGAQLSLRPA 81 (104)
T ss_dssp HHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEEC
T ss_pred HheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcC
Confidence 56677876 2 6899888765 478999999999988876 2366788888887543
No 221
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=76.85 E-value=6.1 Score=29.13 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=27.8
Q ss_pred eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCC
Q 024094 45 IESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGR 82 (272)
Q Consensus 45 I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~ 82 (272)
|..|.++.. ..||+||++....+...+++.+.|.
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCCc
Confidence 777777753 4699999999999988888877765
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.48 E-value=2.2 Score=29.88 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=32.7
Q ss_pred CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeCCeeEEEEee
Q 024094 44 EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYAGRPIIVDFS 94 (272)
Q Consensus 44 ~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~GR~I~ve~s 94 (272)
.|-.|.|.+ .|.||+-.. ..|..++..|++..+.|+.|.|+.+
T Consensus 32 ~IG~I~i~d-------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 32 DIGIITIMD-------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp GEEEEEECS-------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred hccEEEEeC-------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 566777876 378999886 6688899999999999999999875
No 223
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=68.84 E-value=6.9 Score=29.51 Aligned_cols=39 Identities=23% Similarity=0.577 Sum_probs=31.2
Q ss_pred eeEEEEEecCHHHHHHHHHHhCCCeeC---C--eeEEEEeecCC
Q 024094 59 VGNVYVQFREEEQAARALKSLSGRFYA---G--RPIIVDFSPVT 97 (272)
Q Consensus 59 ~G~afVeF~~~~dA~~A~~~lnG~~~~---G--R~I~ve~s~~~ 97 (272)
-.-|||.|.+.++...-.+.++|..|- | -+..|||++-+
T Consensus 53 ~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~APyq 96 (97)
T 2l08_A 53 YSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQ 96 (97)
T ss_dssp CCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECCCC
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecCCC
Confidence 367999999999999999999999883 2 24467887643
No 224
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.16 E-value=2.2 Score=30.45 Aligned_cols=27 Identities=22% Similarity=0.716 Sum_probs=21.3
Q ss_pred chhhhhhccccccCCCCCccccceecc
Q 024094 99 FREATCRQYEENTCNRGGYCNFMHLKR 125 (272)
Q Consensus 99 ~r~~~c~~~~~g~~~~g~~cn~~h~~~ 125 (272)
.+...|+.|..|.|.+|..|.|.|...
T Consensus 8 ~k~~~C~~fl~G~C~~G~~C~fsH~~~ 34 (77)
T 2d9n_A 8 EKTVVCKHWLRGLCKKGDQCEFLHEYD 34 (77)
T ss_dssp CTTSBCHHHHTTCCSCTTSSSSBCSCC
T ss_pred CcceeCHhHccCcCCCCCCCCCccccc
Confidence 455678888888888888888888654
No 225
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=65.77 E-value=7.4 Score=37.49 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=34.4
Q ss_pred HHHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 024094 32 YEDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 80 (272)
Q Consensus 32 ~eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln 80 (272)
..||.+.|+.||.| .|.+++. -.|||.|.+.+.|..+++++.
T Consensus 453 ~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 453 TSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp HHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 36999999999965 4555543 379999999999999999885
No 226
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=65.29 E-value=5.3 Score=30.52 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=29.0
Q ss_pred CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCe
Q 024094 44 EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRF 83 (272)
Q Consensus 44 ~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~ 83 (272)
.|.+|.+++. .+||+|||=..+.+...|+..+-+..
T Consensus 40 ~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECTT----CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecCC----CceEEEEEeCCHHHHHHHHhccccee
Confidence 4778877754 46999999999999999988776554
No 227
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=64.00 E-value=1.8 Score=30.65 Aligned_cols=30 Identities=20% Similarity=0.680 Sum_probs=23.7
Q ss_pred CCCchhhhhhccccccCCCCCccccceecc
Q 024094 96 VTDFREATCRQYEENTCNRGGYCNFMHLKR 125 (272)
Q Consensus 96 ~~~~r~~~c~~~~~g~~~~g~~cn~~h~~~ 125 (272)
....+...|+.|..|.|.+|..|.|.|...
T Consensus 11 ~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~ 40 (72)
T 2rhk_C 11 MSGEKTVVCKHWLRGLCKKGDQCEFLHEYD 40 (72)
T ss_dssp SSCCCCSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred CCCCcCeeCHHHhcCCCCCCCCCCCccccc
Confidence 344556789889999999999999999754
No 228
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=58.75 E-value=2.4 Score=29.75 Aligned_cols=24 Identities=42% Similarity=0.976 Sum_probs=20.3
Q ss_pred hhhhhccccccCCCCC-ccccceec
Q 024094 101 EATCRQYEENTCNRGG-YCNFMHLK 124 (272)
Q Consensus 101 ~~~c~~~~~g~~~~g~-~cn~~h~~ 124 (272)
.++|+.|..|.|.+|. .|.|.|..
T Consensus 6 ~~vC~~f~~G~C~rg~~~C~f~H~~ 30 (70)
T 3d2q_A 6 LEVCREYQRGNCNRGENDCRFAHPA 30 (70)
T ss_dssp EEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred chhCHHHhcCCCCCCCCCCCCccCc
Confidence 3579999999999998 59999964
No 229
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=58.28 E-value=4 Score=28.63 Aligned_cols=31 Identities=26% Similarity=0.651 Sum_probs=25.5
Q ss_pred CCCchhhhhhccc-cccCCCCCccccceeccc
Q 024094 96 VTDFREATCRQYE-ENTCNRGGYCNFMHLKRI 126 (272)
Q Consensus 96 ~~~~r~~~c~~~~-~g~~~~g~~cn~~h~~~~ 126 (272)
...++...|..|. .|.|..|..|.|.|....
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e 38 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGE 38 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence 4567788899884 899999999999997654
No 230
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=53.44 E-value=7.8 Score=32.98 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=30.0
Q ss_pred eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCeeC
Q 024094 45 IESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRFYA 85 (272)
Q Consensus 45 I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~~~ 85 (272)
|.+|.+++. .+||+|||=..+.+..+|++.|-+.+..
T Consensus 139 I~Si~~~d~----lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 139 ILSIFQRDN----YTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp CCEEECCTT----STTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred EEEEEecCC----CcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 677766653 5699999999999999999998886443
No 231
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=49.90 E-value=6.3 Score=29.50 Aligned_cols=22 Identities=32% Similarity=0.747 Sum_probs=10.6
Q ss_pred hhhhccccccCCCCCcccccee
Q 024094 102 ATCRQYEENTCNRGGYCNFMHL 123 (272)
Q Consensus 102 ~~c~~~~~g~~~~g~~cn~~h~ 123 (272)
..|..|..|.|..|..|.|.|.
T Consensus 14 ~lC~~f~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 14 ELCKFYITGFCARAENCPYMHG 35 (98)
T ss_dssp SBCTTTTTTCCSCSTTCSSBSS
T ss_pred ccCcccccCcCCCCCCCCCCCC
Confidence 3444444445555444555554
No 232
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.57 E-value=4.8 Score=28.54 Aligned_cols=25 Identities=32% Similarity=0.755 Sum_probs=22.1
Q ss_pred hhhhccccccCCCCCccccceeccc
Q 024094 102 ATCRQYEENTCNRGGYCNFMHLKRI 126 (272)
Q Consensus 102 ~~c~~~~~g~~~~g~~cn~~h~~~~ 126 (272)
..|..|..|.|+.|..|.|.|....
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSHHH
T ss_pred ccCcccCcCCCCCCCccCCcCCHHH
Confidence 6899998899999999999997653
No 233
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=49.41 E-value=6 Score=28.84 Aligned_cols=25 Identities=32% Similarity=0.842 Sum_probs=21.2
Q ss_pred hhhhhccccccCCCCC-ccccceecc
Q 024094 101 EATCRQYEENTCNRGG-YCNFMHLKR 125 (272)
Q Consensus 101 ~~~c~~~~~g~~~~g~-~cn~~h~~~ 125 (272)
-++|+.|..|.|.++. .|.|.|...
T Consensus 9 ~~VCr~FlrG~C~r~d~~C~f~H~~~ 34 (83)
T 3d2n_A 9 LEVCREFQRGTCSRPDTECKFAHPSK 34 (83)
T ss_dssp EEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred chhcHHHhcCCCCCCCCCCCCcCCCc
Confidence 3679999999999995 999999853
No 234
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=47.37 E-value=31 Score=27.35 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=28.6
Q ss_pred eEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCe
Q 024094 45 IESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRF 83 (272)
Q Consensus 45 I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~ 83 (272)
|.+|.++.. ..||+||++....+...+++.+.|..
T Consensus 33 i~~v~vp~~----fPGYVfVe~~~~~~~~~~v~~t~gV~ 67 (152)
T 3p8b_B 33 IYAILAPSR----VKGYIFVEAPNKGVVDEAIRGIRHAR 67 (152)
T ss_dssp CCEEEECTT----CCSEEEEEESSHHHHHHHHTTCTTEE
T ss_pred EEEEEeecC----CCcEEEEEEEchHHHHHHHhCCCCEE
Confidence 778887753 35999999999999999998888763
No 235
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=45.35 E-value=5.6 Score=29.45 Aligned_cols=26 Identities=35% Similarity=0.837 Sum_probs=22.2
Q ss_pred hhhhhhccccccCCCCC-ccccceecc
Q 024094 100 REATCRQYEENTCNRGG-YCNFMHLKR 125 (272)
Q Consensus 100 r~~~c~~~~~g~~~~g~-~cn~~h~~~ 125 (272)
+.++|+.|..|.|.++. .|.|.|...
T Consensus 16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~ 42 (89)
T 2rpp_A 16 TLEVCRQFQRGTCSRSDEECKFAHPPK 42 (89)
T ss_dssp EECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred hhhhchHHhcCCCCCCCCCCCCcCCCc
Confidence 34679999999999997 999999754
No 236
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=45.11 E-value=47 Score=25.79 Aligned_cols=68 Identities=16% Similarity=0.150 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhc----------cCCeEEEEEeeCCCCCceeEEEEE-ecCHHHHHHHHHHhC---CCe--eCCeeEEEE
Q 024094 29 EDFYEDLFEELNK----------YGEIESLNICDNLADHMVGNVYVQ-FREEEQAARALKSLS---GRF--YAGRPIIVD 92 (272)
Q Consensus 29 d~~~eDL~~~F~k----------fG~I~~i~v~~~~~~~~~G~afVe-F~~~~dA~~A~~~ln---G~~--~~GR~I~ve 92 (272)
+.|.++|-+++.. +=.|..|.|-.+. ....|||. |-..++.+.++.+|+ |.. .-|+.|.+-
T Consensus 20 ~~i~~~ls~il~~~~~dp~l~~~~vtVt~V~vS~Dl---~~AkVyvs~~~~~~~~~~~~~~L~~a~g~iR~~l~~~l~lr 96 (129)
T 2e7g_A 20 GLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDF---SACRAYWKTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLR 96 (129)
T ss_dssp HHHHHHHHHHTTCTTTCHHHHHHTCCEEEEEECTTS---CCEEEEECCCSCHHHHHHHHHHHHHTHHHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHhcccCccccCCeeEEEEEEECCCC---cEEEEEEEecCChhhHHHHHHHHHHhHHHHHHHHHhhcCCc
Confidence 4556666666653 4477788776543 24688888 655554444444443 321 124444555
Q ss_pred eecCCCc
Q 024094 93 FSPVTDF 99 (272)
Q Consensus 93 ~s~~~~~ 99 (272)
+.|.-.|
T Consensus 97 ~~PeL~F 103 (129)
T 2e7g_A 97 NVPPIVF 103 (129)
T ss_dssp CCCCEEE
T ss_pred cCCeEEE
Confidence 5544444
No 237
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=44.21 E-value=1.1e+02 Score=24.43 Aligned_cols=56 Identities=9% Similarity=0.201 Sum_probs=40.4
Q ss_pred HHhHHHHHHHHHHHHHHhccCCeEEEEEe--eCCC--------------CCceeEEEEEecCHHHHHHHHHH
Q 024094 23 KIQEHFEDFYEDLFEELNKYGEIESLNIC--DNLA--------------DHMVGNVYVQFREEEQAARALKS 78 (272)
Q Consensus 23 ~~~~~yd~~~eDL~~~F~kfG~I~~i~v~--~~~~--------------~~~~G~afVeF~~~~dA~~A~~~ 78 (272)
+-.+.|.++-+..-++|..||.|.-+... +-.. +...-|.+|+|.+.+...+|..+
T Consensus 38 ankeaY~~~A~~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~k 109 (141)
T 2okq_A 38 DKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQK 109 (141)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHH
Confidence 33578888888899999999987655433 3221 23456899999999988877743
No 238
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=41.82 E-value=7 Score=34.04 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=25.4
Q ss_pred hhhhccccccCCCCCccccceecccChHHH
Q 024094 102 ATCRQYEENTCNRGGYCNFMHLKRISRDLR 131 (272)
Q Consensus 102 ~~c~~~~~g~~~~g~~cn~~h~~~~~r~~~ 131 (272)
..|-.|.+|.|.+|..|.|+|.++...++.
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~lPt~~d~~ 100 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHIPDEEDIG 100 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSCCCHHHHH
T ss_pred eEcCccccCCCCCCCCCCccCCCCCccchh
Confidence 368888899999999999999988766654
No 239
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.78 E-value=3.1 Score=31.34 Aligned_cols=25 Identities=32% Similarity=0.842 Sum_probs=20.2
Q ss_pred hhhhhccccccCCCCC-ccccceecc
Q 024094 101 EATCRQYEENTCNRGG-YCNFMHLKR 125 (272)
Q Consensus 101 ~~~c~~~~~g~~~~g~-~cn~~h~~~ 125 (272)
..+|+.|..|.|.+|. .|.|.|...
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~~~ 45 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHPAD 45 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCCch
Confidence 3578888889999887 799999754
No 240
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=39.05 E-value=8.9 Score=26.71 Aligned_cols=27 Identities=26% Similarity=0.655 Sum_probs=22.5
Q ss_pred CchhhhhhccccccCCCCCccccceecc
Q 024094 98 DFREATCRQYEENTCNRGGYCNFMHLKR 125 (272)
Q Consensus 98 ~~r~~~c~~~~~g~~~~g~~cn~~h~~~ 125 (272)
..+...|..|..|.|.++ .|.|+|...
T Consensus 39 ~~~~~vC~~flkG~C~r~-~C~y~H~~~ 65 (70)
T 3d2q_A 39 DNTVTVCMDYIKGRCSRE-KCKYFHPPA 65 (70)
T ss_dssp TTEEEBCHHHHTTCCCCT-TCCSBCCCH
T ss_pred CCcceeccccCcCCCCCC-CcCeeCCHH
Confidence 345678999999999999 999999754
No 241
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=34.03 E-value=61 Score=24.59 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=37.1
Q ss_pred CCCChHHHhHHHHHHHHHHHHHHhccCCeEEEEEeeCCCCCcee---EEEEEecCHHHHH
Q 024094 17 NPLDPRKIQEHFEDFYEDLFEELNKYGEIESLNICDNLADHMVG---NVYVQFREEEQAA 73 (272)
Q Consensus 17 ~~~~~~~~~~~yd~~~eDL~~~F~kfG~I~~i~v~~~~~~~~~G---~afVeF~~~~dA~ 73 (272)
..++++++.+..+.+++.|..+-.+.-.|+.+.+-.+... ..| ..+++|++.++-.
T Consensus 31 ~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~-~~~yd~~l~~~F~s~e~l~ 89 (118)
T 3fmb_A 31 DDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNP-GETWNIALYSEFDNLDDVK 89 (118)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCT-TCCCCEEEEEEESSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCC-CCCceEEEEEEECCHHHHH
Confidence 3456677667777777777777777878888888655331 123 3567888876543
No 242
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=33.76 E-value=1.1e+02 Score=22.06 Aligned_cols=51 Identities=18% Similarity=0.265 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhccC-CeEEEEEeeCCCC--CceeEEEEEecCHHHHHHHHH
Q 024094 27 HFEDFYEDLFEELNKYG-EIESLNICDNLAD--HMVGNVYVQFREEEQAARALK 77 (272)
Q Consensus 27 ~yd~~~eDL~~~F~kfG-~I~~i~v~~~~~~--~~~G~afVeF~~~~dA~~A~~ 77 (272)
.|.+-.+-+...|.+|| .++---......| ...-.+.|+|.+.+.|.+++.
T Consensus 18 ~y~~Y~~~~~~~l~~~GG~~l~rg~~~~lEG~~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 18 KLQQYGARVASTLAKYSGEVLVKGSVEQLHGKFEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECEEEESCCCCSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcccccccCCCCCCeEEEEECCCHHHHHHHHC
Confidence 34455566667788886 3332111111112 234689999999999988764
No 243
>1k4n_A Protein EC4020, protein YECM; structural genomics, A NEW fold of protein, PSI, protein structure initiative; 1.60A {Escherichia coli} SCOP: d.32.1.5
Probab=33.36 E-value=98 Score=25.99 Aligned_cols=68 Identities=19% Similarity=0.306 Sum_probs=48.5
Q ss_pred CChHHHhHHHHHHHHHHHHHHhccC-CeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCC-------CeeCCeeEE
Q 024094 19 LDPRKIQEHFEDFYEDLFEELNKYG-EIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSG-------RFYAGRPII 90 (272)
Q Consensus 19 ~~~~~~~~~yd~~~eDL~~~F~kfG-~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG-------~~~~GR~I~ 90 (272)
..+.+|...|..|+.-|..+....| .+....+- -+-+...+.+.|+.+..+|-- ..++||+|.
T Consensus 12 ~~~~~l~~dl~~F~~ki~~l~~~Lgldl~~~~~D---------HIalRvn~~~~Ae~~~~~l~~~G~llSen~INGRPI~ 82 (192)
T 1k4n_A 12 DELQDIASDLPRFIHALDELSRRLGLNITPLTAD---------HISLRCHQNATAERWRRGFEQCGELLSENMINGRPIC 82 (192)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHTCCCTTCEEE---------EEEEECSCHHHHHHHHHHHTTTEEEEEEEEETTEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhCCCchhccCc---------EEEEecCCHHHHHHHHHHHHHhchhhhccccCCeeEE
Confidence 5667888999999999999999888 44333221 234566778888887777643 357999995
Q ss_pred -EEeec
Q 024094 91 -VDFSP 95 (272)
Q Consensus 91 -ve~s~ 95 (272)
+++.+
T Consensus 83 l~~L~q 88 (192)
T 1k4n_A 83 LFKLHE 88 (192)
T ss_dssp EEEEEE
T ss_pred EEEcCC
Confidence 55543
No 244
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=31.96 E-value=44 Score=32.95 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=34.6
Q ss_pred HHHHHH----hccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 024094 34 DLFEEL----NKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLS 80 (272)
Q Consensus 34 DL~~~F----~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~ln 80 (272)
||..+| ..+|-|+.+.|.--.......+++|.|.+.++|.+|+..+-
T Consensus 359 DL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 359 DIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 566666 27899999988632223345688999999999999988763
No 245
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=29.73 E-value=32 Score=32.81 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=29.2
Q ss_pred HHHHHH--hccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHH
Q 024094 34 DLFEEL--NKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALK 77 (272)
Q Consensus 34 DL~~~F--~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~ 77 (272)
||..+| +.+|-|+.+.|...........+++.|.+.++|.+|+.
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 345555 47999999988633223344677899999877766443
No 246
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.00 E-value=18 Score=26.96 Aligned_cols=27 Identities=26% Similarity=0.617 Sum_probs=22.9
Q ss_pred CchhhhhhccccccCCCCCccccceecc
Q 024094 98 DFREATCRQYEENTCNRGGYCNFMHLKR 125 (272)
Q Consensus 98 ~~r~~~c~~~~~g~~~~g~~cn~~h~~~ 125 (272)
..+...|..|..|.|.++ .|.|+|...
T Consensus 53 ~~~~~vC~~flkG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 53 DNTVTVCMDYIKGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp TCEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred CCccccchhhccCCCCCC-CcCccCChH
Confidence 345668999999999999 999999865
No 247
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.24 E-value=9.8 Score=30.57 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=16.9
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEec
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFR 67 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~ 67 (272)
+|+.++|...|.|+-+... +||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-------kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-------MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-------TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-------CCeeEEeeC
Confidence 5667778888888755433 378888865
No 248
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=20.67 E-value=1.4e+02 Score=25.03 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=41.3
Q ss_pred HHHHHHHhccCCeEEEEEeeCCCCCceeEEEEEecCHHHHHHHHHHhCCCe------eCCe-eEEEEe
Q 024094 33 EDLFEELNKYGEIESLNICDNLADHMVGNVYVQFREEEQAARALKSLSGRF------YAGR-PIIVDF 93 (272)
Q Consensus 33 eDL~~~F~kfG~I~~i~v~~~~~~~~~G~afVeF~~~~dA~~A~~~lnG~~------~~GR-~I~ve~ 93 (272)
++|..+..-|.++. +..+..+.-.||+|.+..+....+..|.|.. ++|. +|.+.+
T Consensus 68 ~~I~~Ei~aYnpLi------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~ai~ 129 (194)
T 3fjv_A 68 DGIQAELDAYLPLV------PDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYAIA 129 (194)
T ss_dssp HHHHHHHHHHGGGC------CCSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEECEE
T ss_pred HHHHHHHHHhcccC------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeeeec
Confidence 67888888888763 2234456788999999999999999999874 5665 566543
Done!