Query 024095
Match_columns 272
No_of_seqs 418 out of 2819
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 08:56:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 2.3E-24 5E-29 199.1 7.1 70 67-136 1-70 (371)
2 KOG0716 Molecular chaperone (D 99.9 3.4E-24 7.3E-29 188.1 3.8 93 66-158 27-119 (279)
3 KOG0713 Molecular chaperone (D 99.9 2.3E-23 5.1E-28 188.2 6.3 72 66-137 12-83 (336)
4 PRK14288 chaperone protein Dna 99.8 1.5E-20 3.3E-25 176.5 6.3 69 69-137 2-70 (369)
5 PRK14296 chaperone protein Dna 99.8 5.5E-20 1.2E-24 172.8 6.6 68 69-137 3-70 (372)
6 PRK14279 chaperone protein Dna 99.8 7.4E-20 1.6E-24 173.0 6.9 69 68-136 7-75 (392)
7 PRK14286 chaperone protein Dna 99.8 1.3E-19 2.9E-24 170.3 6.6 69 69-137 3-71 (372)
8 KOG0712 Molecular chaperone (D 99.8 2.7E-19 6E-24 163.5 6.8 67 68-137 2-68 (337)
9 PRK14282 chaperone protein Dna 99.8 5.1E-19 1.1E-23 166.2 7.0 69 69-137 3-72 (369)
10 PRK14285 chaperone protein Dna 99.8 6.8E-19 1.5E-23 165.1 6.9 69 69-137 2-70 (365)
11 PRK14287 chaperone protein Dna 99.8 7.3E-19 1.6E-23 165.2 6.8 68 69-137 3-70 (371)
12 PRK14297 chaperone protein Dna 99.8 8.4E-19 1.8E-23 165.4 7.1 69 69-137 3-71 (380)
13 PRK14277 chaperone protein Dna 99.8 8.5E-19 1.9E-23 165.6 6.8 68 69-136 4-71 (386)
14 PRK14294 chaperone protein Dna 99.8 8.5E-19 1.8E-23 164.6 6.7 68 69-136 3-70 (366)
15 PRK14301 chaperone protein Dna 99.8 1E-18 2.2E-23 164.4 7.0 69 69-137 3-71 (373)
16 PTZ00037 DnaJ_C chaperone prot 99.8 7.4E-19 1.6E-23 167.2 6.0 66 68-137 26-91 (421)
17 PRK14299 chaperone protein Dna 99.7 1.3E-18 2.9E-23 158.5 6.6 68 69-137 3-70 (291)
18 PF00226 DnaJ: DnaJ domain; I 99.7 1.2E-18 2.7E-23 123.4 5.0 63 71-133 1-64 (64)
19 PRK14276 chaperone protein Dna 99.7 1.2E-18 2.6E-23 164.3 6.4 68 69-137 3-70 (380)
20 PRK14278 chaperone protein Dna 99.7 1.8E-18 3.8E-23 163.0 7.1 66 70-136 3-68 (378)
21 PRK14298 chaperone protein Dna 99.7 1.5E-18 3.2E-23 163.5 6.4 67 69-136 4-70 (377)
22 PRK14283 chaperone protein Dna 99.7 1.6E-18 3.5E-23 163.3 6.5 67 69-136 4-70 (378)
23 PRK14284 chaperone protein Dna 99.7 1.7E-18 3.6E-23 163.9 6.5 67 70-136 1-67 (391)
24 PRK14295 chaperone protein Dna 99.7 1.9E-18 4.1E-23 163.3 6.9 66 69-134 8-73 (389)
25 PRK10767 chaperone protein Dna 99.7 2.5E-18 5.5E-23 161.7 7.0 68 69-136 3-70 (371)
26 PRK14291 chaperone protein Dna 99.7 2.2E-18 4.7E-23 162.7 6.3 68 69-137 2-69 (382)
27 PRK14280 chaperone protein Dna 99.7 2.4E-18 5.3E-23 162.0 6.3 68 69-137 3-70 (376)
28 PRK14281 chaperone protein Dna 99.7 2.9E-18 6.2E-23 162.5 6.7 68 70-137 3-70 (397)
29 KOG0691 Molecular chaperone (D 99.7 2.3E-18 4.9E-23 155.8 5.7 70 69-138 4-73 (296)
30 KOG0717 Molecular chaperone (D 99.7 2.5E-18 5.5E-23 160.3 4.6 74 67-140 5-79 (508)
31 PRK14289 chaperone protein Dna 99.7 1E-17 2.2E-22 158.4 6.7 68 69-136 4-71 (386)
32 PRK14290 chaperone protein Dna 99.7 1.2E-17 2.6E-22 156.8 6.8 68 70-137 3-71 (365)
33 TIGR02349 DnaJ_bact chaperone 99.7 2E-17 4.4E-22 154.6 6.2 66 71-137 1-66 (354)
34 PRK14292 chaperone protein Dna 99.7 2.5E-17 5.4E-22 154.9 6.8 66 70-136 2-67 (371)
35 PRK14300 chaperone protein Dna 99.7 2E-17 4.4E-22 155.6 6.1 67 70-137 3-69 (372)
36 KOG0715 Molecular chaperone (D 99.7 2.9E-17 6.3E-22 149.2 6.1 68 70-138 43-110 (288)
37 PRK10266 curved DNA-binding pr 99.7 2.8E-17 6.2E-22 150.8 5.9 67 69-136 3-69 (306)
38 PRK14293 chaperone protein Dna 99.7 3.9E-17 8.5E-22 153.8 6.4 68 69-137 2-69 (374)
39 KOG0718 Molecular chaperone (D 99.7 4.2E-17 9.1E-22 152.4 5.7 73 66-138 5-80 (546)
40 smart00271 DnaJ DnaJ molecular 99.7 1.4E-16 3E-21 111.2 6.8 59 70-128 1-60 (60)
41 PTZ00341 Ring-infected erythro 99.7 1.1E-16 2.3E-21 161.1 6.8 71 67-138 570-640 (1136)
42 KOG0719 Molecular chaperone (D 99.6 7.5E-17 1.6E-21 139.0 4.3 73 68-140 12-86 (264)
43 cd06257 DnaJ DnaJ domain or J- 99.6 3.5E-16 7.6E-21 107.1 6.7 55 71-125 1-55 (55)
44 KOG0721 Molecular chaperone (D 99.6 7.3E-16 1.6E-20 131.7 6.1 73 65-137 94-166 (230)
45 PHA03102 Small T antigen; Revi 99.6 5.7E-16 1.2E-20 127.8 5.0 65 70-138 5-71 (153)
46 COG2214 CbpA DnaJ-class molecu 99.6 4E-15 8.6E-20 127.7 6.1 68 68-135 4-72 (237)
47 TIGR03835 termin_org_DnaJ term 99.6 5.1E-15 1.1E-19 146.1 7.1 67 70-137 2-68 (871)
48 PRK05014 hscB co-chaperone Hsc 99.5 3E-14 6.4E-19 120.3 6.5 66 70-135 1-73 (171)
49 PRK01356 hscB co-chaperone Hsc 99.5 5E-14 1.1E-18 118.3 6.2 66 70-135 2-72 (166)
50 PRK03578 hscB co-chaperone Hsc 99.5 9.2E-14 2E-18 117.8 7.0 68 68-135 4-78 (176)
51 PRK00294 hscB co-chaperone Hsc 99.5 9.9E-14 2.1E-18 117.2 7.0 68 68-135 2-76 (173)
52 KOG0624 dsRNA-activated protei 99.4 1.4E-13 3E-18 125.5 6.8 68 68-135 392-462 (504)
53 PTZ00100 DnaJ chaperone protei 99.4 4E-13 8.7E-18 105.6 5.8 55 66-124 61-115 (116)
54 KOG0720 Molecular chaperone (D 99.4 4.6E-13 1E-17 125.4 5.1 68 67-135 232-299 (490)
55 KOG0722 Molecular chaperone (D 99.3 5.9E-13 1.3E-17 116.3 2.5 68 68-136 31-98 (329)
56 COG1141 Fer Ferredoxin [Energy 99.3 1E-12 2.3E-17 93.6 3.2 59 155-214 2-68 (68)
57 PF13370 Fer4_13: 4Fe-4S singl 99.3 8.4E-13 1.8E-17 92.0 1.2 55 158-212 1-58 (58)
58 PRK09430 djlA Dna-J like membr 99.3 5.2E-12 1.1E-16 113.9 6.0 59 67-125 197-262 (267)
59 KOG0714 Molecular chaperone (D 99.2 4.8E-12 1E-16 113.5 4.2 69 69-137 2-71 (306)
60 PF13459 Fer4_15: 4Fe-4S singl 99.2 5E-12 1.1E-16 90.0 3.1 56 156-212 1-65 (65)
61 KOG0550 Molecular chaperone (D 99.2 6.8E-12 1.5E-16 116.7 4.4 68 68-135 371-439 (486)
62 PHA02624 large T antigen; Prov 99.2 8.3E-12 1.8E-16 122.2 5.1 60 69-132 10-71 (647)
63 PRK01773 hscB co-chaperone Hsc 99.2 3.7E-11 8E-16 101.5 6.4 65 70-134 2-73 (173)
64 COG5269 ZUO1 Ribosome-associat 99.2 1.7E-11 3.7E-16 108.2 4.0 121 63-200 36-161 (379)
65 COG5407 SEC63 Preprotein trans 99.1 6.9E-11 1.5E-15 110.7 3.8 69 68-136 96-169 (610)
66 TIGR00714 hscB Fe-S protein as 99.0 8.3E-10 1.8E-14 92.0 6.0 55 81-135 2-61 (157)
67 KOG1150 Predicted molecular ch 98.9 1.8E-09 4E-14 91.5 5.1 68 66-133 49-117 (250)
68 KOG0723 Molecular chaperone (D 98.5 2.9E-07 6.4E-12 70.6 5.3 61 62-126 48-108 (112)
69 KOG1789 Endocytosis protein RM 98.4 2.7E-07 5.8E-12 94.1 5.5 59 64-125 1275-1337(2235)
70 KOG0568 Molecular chaperone (D 98.3 4.5E-07 9.7E-12 78.8 4.4 57 68-125 45-102 (342)
71 PF06902 Fer4_19: Divergent 4F 97.9 1.2E-05 2.6E-10 57.0 3.1 58 154-214 6-63 (64)
72 KOG3192 Mitochondrial J-type c 97.5 7.6E-05 1.6E-09 61.3 3.1 68 67-134 5-79 (168)
73 COG1143 NuoI Formate hydrogenl 97.2 9.2E-05 2E-09 62.5 0.1 66 153-218 47-120 (172)
74 COG1146 Ferredoxin [Energy pro 97.1 0.0002 4.3E-09 51.0 1.5 60 156-216 3-64 (68)
75 PF14697 Fer4_21: 4Fe-4S diclu 97.1 3.8E-05 8.2E-10 53.5 -2.2 53 157-212 2-59 (59)
76 PF13187 Fer4_9: 4Fe-4S diclus 97.1 0.0001 2.2E-09 50.0 -0.3 48 162-210 1-55 (55)
77 COG1142 HycB Fe-S-cluster-cont 97.1 0.00013 2.8E-09 61.1 -0.0 69 153-221 74-147 (165)
78 PRK08348 NADH-plastoquinone ox 96.9 0.00051 1.1E-08 54.5 2.1 61 153-215 34-95 (120)
79 PRK09626 oorD 2-oxoglutarate-a 96.8 0.00031 6.6E-09 54.3 0.2 68 154-222 9-84 (103)
80 CHL00065 psaC photosystem I su 96.7 0.00043 9.4E-09 51.0 0.1 59 157-215 5-68 (81)
81 TIGR02060 aprB adenosine phosp 96.6 0.0011 2.4E-08 53.7 2.0 65 156-221 3-73 (132)
82 COG0437 HybA Fe-S-cluster-cont 96.6 0.001 2.2E-08 57.5 1.9 67 153-221 92-164 (203)
83 PF13247 Fer4_11: 4Fe-4S diclu 96.6 0.00039 8.5E-09 53.4 -0.6 63 153-215 32-98 (98)
84 PLN00071 photosystem I subunit 96.6 0.00069 1.5E-08 49.8 0.4 60 156-215 4-68 (81)
85 COG1076 DjlA DnaJ-domain-conta 96.5 0.0013 2.9E-08 55.6 2.1 54 70-123 113-173 (174)
86 TIGR02936 fdxN_nitrog ferredox 96.5 0.0011 2.4E-08 49.7 1.0 60 154-213 14-90 (91)
87 COG1144 Pyruvate:ferredoxin ox 96.4 0.0014 3E-08 49.1 1.0 59 154-215 28-88 (91)
88 PRK07569 bidirectional hydroge 96.3 0.01 2.2E-07 52.5 6.6 62 154-215 139-212 (234)
89 PRK09623 vorD 2-ketoisovalerat 96.3 0.0016 3.6E-08 50.5 1.3 58 155-215 45-103 (105)
90 TIGR03048 PS_I_psaC photosyste 96.2 0.0017 3.7E-08 47.7 0.8 58 157-214 4-66 (80)
91 TIGR00403 ndhI NADH-plastoquin 96.1 0.0033 7.3E-08 53.7 2.3 66 154-219 55-128 (183)
92 COG1076 DjlA DnaJ-domain-conta 96.1 0.003 6.4E-08 53.5 1.9 64 71-134 2-72 (174)
93 PRK13984 putative oxidoreducta 96.1 0.0022 4.8E-08 64.2 1.2 60 156-215 40-108 (604)
94 PRK06991 ferredoxin; Provision 96.1 0.0028 6E-08 57.4 1.7 60 154-216 78-138 (270)
95 TIGR01582 FDH-beta formate deh 96.1 0.0022 4.7E-08 58.5 1.0 69 154-222 117-189 (283)
96 PF03656 Pam16: Pam16; InterP 96.1 0.012 2.7E-07 47.2 5.1 58 66-127 54-111 (127)
97 KOG3256 NADH:ubiquinone oxidor 96.0 0.0014 3.1E-08 54.5 -0.4 75 139-213 89-170 (212)
98 PRK02651 photosystem I subunit 96.0 0.0025 5.4E-08 46.7 0.9 56 159-214 7-67 (81)
99 PRK08222 hydrogenase 4 subunit 96.0 0.0017 3.6E-08 55.4 -0.2 66 153-218 30-98 (181)
100 PRK09625 porD pyruvate flavodo 95.9 0.003 6.5E-08 51.2 1.1 58 155-215 53-111 (133)
101 TIGR02494 PFLE_PFLC glycyl-rad 95.9 0.0037 7.9E-08 56.9 1.6 61 153-214 40-103 (295)
102 KOG0431 Auxilin-like protein a 95.8 0.011 2.5E-07 57.2 4.5 43 80-122 398-447 (453)
103 PRK12387 formate hydrogenlyase 95.8 0.004 8.7E-08 52.9 1.3 67 153-219 30-99 (180)
104 PRK09898 hypothetical protein; 95.8 0.0058 1.3E-07 53.1 2.2 59 155-219 148-207 (208)
105 PRK00783 DNA-directed RNA poly 95.7 0.012 2.6E-07 53.0 4.3 95 156-268 165-261 (263)
106 PRK14028 pyruvate ferredoxin o 95.7 0.026 5.6E-07 52.0 6.4 60 155-214 241-310 (312)
107 COG3592 Uncharacterized conser 95.7 0.01 2.3E-07 42.0 2.8 56 155-213 17-72 (74)
108 PRK09624 porD pyuvate ferredox 95.6 0.0024 5.3E-08 49.6 -0.5 56 156-214 46-102 (105)
109 PRK05113 electron transport co 95.6 0.0057 1.2E-07 52.6 1.6 60 154-216 107-167 (191)
110 PRK08318 dihydropyrimidine deh 95.6 0.005 1.1E-07 59.0 1.3 61 154-216 335-401 (420)
111 TIGR02163 napH_ ferredoxin-typ 95.6 0.0083 1.8E-07 53.8 2.6 54 159-213 199-254 (255)
112 TIGR00402 napF ferredoxin-type 95.5 0.0036 7.9E-08 48.1 -0.1 58 158-216 31-89 (101)
113 TIGR01971 NuoI NADH-quinone ox 95.5 0.0035 7.5E-08 49.6 -0.3 59 161-219 43-108 (122)
114 PRK05888 NADH dehydrogenase su 95.4 0.0069 1.5E-07 50.6 1.5 55 162-216 59-120 (164)
115 PRK09477 napH quinol dehydroge 95.4 0.009 1.9E-07 54.1 2.2 58 158-215 205-264 (271)
116 TIGR02179 PorD_KorD 2-oxoacid: 95.2 0.0058 1.3E-07 44.4 0.3 57 156-215 20-77 (78)
117 CHL00014 ndhI NADH dehydrogena 95.2 0.0077 1.7E-07 50.6 0.9 66 154-219 52-125 (167)
118 PRK14993 tetrathionate reducta 95.1 0.0088 1.9E-07 53.4 1.0 63 154-219 123-192 (244)
119 TIGR03149 cyt_nit_nrfC cytochr 95.0 0.012 2.6E-07 51.8 1.7 65 155-219 119-188 (225)
120 PF12797 Fer4_2: 4Fe-4S bindin 94.7 0.0085 1.9E-07 33.2 -0.1 20 155-174 2-21 (22)
121 TIGR02951 DMSO_dmsB DMSO reduc 94.6 0.02 4.3E-07 47.6 2.0 62 155-218 89-156 (161)
122 COG1145 NapF Ferredoxin [Energ 94.5 0.018 3.9E-07 43.0 1.3 59 157-216 25-86 (99)
123 TIGR01944 rnfB electron transp 94.4 0.021 4.5E-07 47.9 1.7 57 154-213 106-163 (165)
124 PRK10882 hydrogenase 2 protein 94.4 0.011 2.3E-07 55.1 -0.1 66 154-219 136-211 (328)
125 PRK10330 formate dehydrogenase 94.4 0.012 2.7E-07 49.8 0.3 69 155-223 81-165 (181)
126 TIGR02512 Fe_only_hydrog hydro 94.3 0.014 3E-07 55.3 0.4 58 156-213 2-70 (374)
127 TIGR03224 benzo_boxA benzoyl-C 94.1 0.024 5.2E-07 54.4 1.7 54 155-212 4-58 (411)
128 PF13237 Fer4_10: 4Fe-4S diclu 94.1 0.013 2.7E-07 39.1 -0.2 49 156-206 2-52 (52)
129 TIGR02700 flavo_MJ0208 archaeo 94.1 0.012 2.6E-07 52.1 -0.4 56 156-215 143-199 (234)
130 TIGR01973 NuoG NADH-quinone ox 93.9 0.075 1.6E-06 53.4 4.7 60 155-214 136-203 (603)
131 PRK08493 NADH dehydrogenase su 93.8 0.015 3.3E-07 60.2 -0.4 62 154-215 134-226 (819)
132 COG3383 Uncharacterized anaero 93.8 0.048 1.1E-06 55.3 3.0 112 84-211 81-210 (978)
133 PTZ00305 NADH:ubiquinone oxido 93.7 0.071 1.5E-06 48.6 3.8 71 155-225 206-285 (297)
134 cd07030 RNAP_D D subunit of Ar 93.7 0.07 1.5E-06 47.9 3.8 87 161-264 169-257 (259)
135 PF12837 Fer4_6: 4Fe-4S bindin 93.7 0.01 2.2E-07 33.6 -1.0 20 156-175 2-21 (24)
136 PRK08764 ferredoxin; Provision 93.7 0.025 5.5E-07 45.8 0.7 53 157-212 81-134 (135)
137 TIGR02745 ccoG_rdxA_fixG cytoc 93.5 0.068 1.5E-06 51.7 3.5 47 160-215 230-276 (434)
138 PRK12769 putative oxidoreducta 93.5 0.022 4.7E-07 57.8 0.0 67 155-221 79-153 (654)
139 PRK10194 ferredoxin-type prote 93.4 0.02 4.3E-07 47.8 -0.2 55 159-214 32-87 (163)
140 PRK06273 ferredoxin; Provision 93.4 0.014 3E-07 49.1 -1.3 56 156-212 44-110 (165)
141 PRK08166 NADH dehydrogenase su 93.3 0.12 2.5E-06 54.2 5.2 60 155-214 143-210 (847)
142 PRK09129 NADH dehydrogenase su 93.2 0.045 9.7E-07 56.6 1.9 61 154-214 137-205 (776)
143 TIGR03149 cyt_nit_nrfC cytochr 93.2 0.01 2.2E-07 52.4 -2.5 61 153-213 38-114 (225)
144 PRK07860 NADH dehydrogenase su 92.3 0.18 3.9E-06 52.4 4.8 60 155-214 144-211 (797)
145 COG2878 Predicted NADH:ubiquin 92.2 0.024 5.2E-07 48.1 -1.4 63 152-216 106-168 (198)
146 PRK12809 putative oxidoreducta 92.2 0.057 1.2E-06 54.6 1.0 66 155-222 79-146 (639)
147 TIGR01660 narH nitrate reducta 92.0 0.13 2.9E-06 49.6 3.2 59 154-214 174-235 (492)
148 PF12838 Fer4_7: 4Fe-4S diclus 91.9 0.018 3.8E-07 38.5 -2.1 48 162-209 1-52 (52)
149 PRK07118 ferredoxin; Validated 91.7 0.068 1.5E-06 48.7 0.8 61 154-214 161-234 (280)
150 TIGR03478 DMSO_red_II_bet DMSO 91.5 0.032 6.9E-07 51.5 -1.6 63 155-217 156-222 (321)
151 PRK09476 napG quinol dehydroge 91.1 0.047 1E-06 49.0 -0.8 54 161-214 59-120 (254)
152 PRK07118 ferredoxin; Validated 91.1 0.13 2.8E-06 46.9 2.0 56 158-217 210-266 (280)
153 TIGR02912 sulfite_red_C sulfit 90.8 0.085 1.8E-06 48.7 0.5 55 156-214 164-222 (314)
154 TIGR02176 pyruv_ox_red pyruvat 90.3 0.13 2.7E-06 55.7 1.3 61 156-216 678-764 (1165)
155 TIGR03336 IOR_alpha indolepyru 90.0 0.19 4.1E-06 50.5 2.3 51 154-210 543-595 (595)
156 PF00037 Fer4: 4Fe-4S binding 90.0 0.043 9.4E-07 30.9 -1.3 19 157-175 2-20 (24)
157 TIGR01660 narH nitrate reducta 89.8 0.077 1.7E-06 51.2 -0.6 58 154-213 207-270 (492)
158 PRK13795 hypothetical protein; 89.4 0.12 2.5E-06 52.4 0.3 55 156-212 576-631 (636)
159 TIGR03287 methan_mark_16 putat 88.8 0.4 8.6E-06 45.6 3.3 56 154-215 295-352 (391)
160 PRK12771 putative glutamate sy 88.6 0.23 5.1E-06 49.4 1.8 56 158-215 501-563 (564)
161 PRK09130 NADH dehydrogenase su 88.4 0.12 2.6E-06 52.9 -0.6 60 155-214 139-206 (687)
162 PRK10194 ferredoxin-type prote 88.2 0.22 4.8E-06 41.4 1.1 51 163-214 106-159 (163)
163 TIGR03294 FrhG coenzyme F420 h 87.8 0.2 4.2E-06 44.3 0.5 53 156-212 169-222 (228)
164 TIGR03315 Se_ygfK putative sel 87.7 0.26 5.7E-06 52.4 1.5 79 159-239 879-965 (1012)
165 COG1034 NuoG NADH dehydrogenas 87.1 0.21 4.7E-06 50.8 0.5 71 158-229 141-219 (693)
166 TIGR00397 mauM_napG MauM/NapG 86.7 0.14 3E-06 44.8 -1.0 52 161-212 53-112 (213)
167 PF12800 Fer4_4: 4Fe-4S bindin 86.1 0.46 1E-05 24.5 1.2 15 161-175 2-16 (17)
168 PF13446 RPT: A repeated domai 85.3 1.6 3.4E-05 30.2 4.0 27 70-96 5-31 (62)
169 TIGR03478 DMSO_red_II_bet DMSO 84.6 0.98 2.1E-05 41.8 3.4 60 154-215 122-184 (321)
170 COG1148 HdrA Heterodisulfide r 84.1 0.49 1.1E-05 46.3 1.2 60 156-222 556-616 (622)
171 PF11833 DUF3353: Protein of u 83.4 2.8 6.1E-05 36.1 5.5 38 79-124 1-38 (194)
172 COG1149 MinD superfamily P-loo 83.1 0.33 7.1E-06 44.0 -0.3 59 154-215 62-121 (284)
173 PRK10330 formate dehydrogenase 82.5 0.28 6E-06 41.5 -1.0 51 162-215 57-109 (181)
174 PF14697 Fer4_21: 4Fe-4S diclu 82.2 0.95 2.1E-05 31.2 1.8 19 156-174 34-52 (59)
175 PF14687 DUF4460: Domain of un 81.5 3.9 8.4E-05 32.1 5.2 47 81-127 5-55 (112)
176 PRK15449 ferredoxin-like prote 81.1 0.65 1.4E-05 35.4 0.7 24 153-176 53-76 (95)
177 COG1148 HdrA Heterodisulfide r 80.9 0.64 1.4E-05 45.5 0.7 68 153-221 217-299 (622)
178 KOG0724 Zuotin and related mol 79.9 2.1 4.5E-05 39.7 3.8 55 81-135 3-61 (335)
179 PRK13029 2-oxoacid ferredoxin 79.6 0.61 1.3E-05 50.3 0.1 53 154-207 650-705 (1186)
180 COG4231 Indolepyruvate ferredo 78.6 0.96 2.1E-05 45.3 1.2 58 155-215 571-630 (640)
181 cd01916 ACS_1 Acetyl-CoA synth 78.0 4.6 9.9E-05 41.7 5.8 51 159-209 363-419 (731)
182 COG2768 Uncharacterized Fe-S c 77.4 1.5 3.3E-05 40.3 2.0 55 153-211 185-239 (354)
183 PRK09193 indolepyruvate ferred 76.0 0.84 1.8E-05 49.2 -0.1 53 154-207 636-691 (1165)
184 PRK09853 putative selenate red 75.9 1.6 3.5E-05 46.5 2.0 69 156-227 881-960 (1019)
185 PRK12769 putative oxidoreducta 75.8 0.47 1E-05 48.1 -1.9 53 160-215 53-107 (654)
186 TIGR00397 mauM_napG MauM/NapG 75.7 1.2 2.7E-05 38.8 0.9 60 156-215 126-199 (213)
187 TIGR01582 FDH-beta formate deh 74.1 1.8 3.9E-05 39.5 1.6 56 157-215 87-146 (283)
188 PRK09326 F420H2 dehydrogenase 74.1 0.94 2E-05 42.3 -0.3 55 156-210 7-70 (341)
189 PRK13030 2-oxoacid ferredoxin 71.1 1.3 2.7E-05 47.9 -0.1 52 154-206 622-676 (1159)
190 PF13746 Fer4_18: 4Fe-4S diclu 70.7 1.7 3.7E-05 30.9 0.5 21 159-179 48-68 (69)
191 PRK09898 hypothetical protein; 70.6 2 4.4E-05 37.2 1.1 56 156-213 116-174 (208)
192 COG1144 Pyruvate:ferredoxin ox 69.5 1.7 3.6E-05 32.8 0.3 23 158-180 63-86 (91)
193 PRK14993 tetrathionate reducta 69.4 2.9 6.4E-05 37.3 1.8 53 160-215 97-152 (244)
194 PRK09476 napG quinol dehydroge 66.8 1.5 3.2E-05 39.4 -0.6 57 157-214 133-207 (254)
195 PRK12814 putative NADPH-depend 66.6 1.6 3.4E-05 44.4 -0.5 43 155-211 610-652 (652)
196 COG4231 Indolepyruvate ferredo 66.0 2.5 5.5E-05 42.4 0.8 25 153-177 600-624 (640)
197 TIGR02951 DMSO_dmsB DMSO reduc 66.0 2.8 6.1E-05 34.6 1.0 56 158-215 59-117 (161)
198 TIGR00314 cdhA CO dehydrogenas 62.8 7.3 0.00016 40.4 3.4 53 156-208 394-452 (784)
199 PRK13409 putative ATPase RIL; 62.0 3.7 8.1E-05 41.3 1.1 21 154-174 42-62 (590)
200 TIGR00273 iron-sulfur cluster- 61.4 4.8 0.0001 39.0 1.7 52 157-208 289-358 (432)
201 PRK05035 electron transport co 61.1 3.2 6.9E-05 42.6 0.5 49 159-208 368-424 (695)
202 COG1143 NuoI Formate hydrogenl 61.1 4.2 9.2E-05 34.4 1.2 25 152-176 86-110 (172)
203 COG0479 FrdB Succinate dehydro 59.9 1 2.2E-05 40.0 -3.0 15 162-176 143-157 (234)
204 PF13484 Fer4_16: 4Fe-4S doubl 59.7 4.1 9E-05 28.1 0.7 19 198-216 5-23 (67)
205 COG1453 Predicted oxidoreducta 58.4 16 0.00035 34.6 4.6 84 84-180 280-370 (391)
206 COG1245 Predicted ATPase, RNas 57.6 4.6 9.9E-05 39.5 0.9 58 157-216 7-73 (591)
207 KOG3256 NADH:ubiquinone oxidor 57.3 5.9 0.00013 33.3 1.3 23 152-174 141-163 (212)
208 COG1149 MinD superfamily P-loo 57.2 5.9 0.00013 36.0 1.4 23 154-176 92-114 (284)
209 PF12798 Fer4_3: 4Fe-4S bindin 57.2 2.2 4.7E-05 21.3 -0.8 12 163-174 1-12 (15)
210 KOG3442 Uncharacterized conser 55.6 20 0.00043 28.7 3.9 39 67-105 56-94 (132)
211 COG1245 Predicted ATPase, RNas 55.2 4.4 9.6E-05 39.6 0.3 19 156-174 45-63 (591)
212 TIGR00403 ndhI NADH-plastoquin 53.9 6.1 0.00013 33.6 0.9 52 156-211 97-151 (183)
213 COG2221 DsrA Dissimilatory sul 53.2 5 0.00011 37.1 0.3 14 67-80 64-77 (317)
214 TIGR02936 fdxN_nitrog ferredox 52.5 5 0.00011 29.5 0.2 19 157-175 66-84 (91)
215 PRK10882 hydrogenase 2 protein 51.9 7 0.00015 36.5 1.1 53 159-213 108-163 (328)
216 PRK12809 putative oxidoreducta 51.1 7.9 0.00017 39.2 1.4 54 158-215 51-107 (639)
217 COG5552 Uncharacterized conser 46.8 75 0.0016 23.1 5.4 30 70-99 3-32 (88)
218 PRK15449 ferredoxin-like prote 46.3 22 0.00048 27.1 2.9 13 199-211 37-49 (95)
219 CHL00014 ndhI NADH dehydrogena 46.0 10 0.00022 31.7 1.0 27 156-182 94-121 (167)
220 TIGR02066 dsrB sulfite reducta 45.6 8 0.00017 36.3 0.4 22 154-175 207-228 (341)
221 TIGR01971 NuoI NADH-quinone ox 45.2 11 0.00023 29.4 1.0 26 157-182 78-104 (122)
222 PRK08348 NADH-plastoquinone ox 44.2 9.2 0.0002 29.9 0.5 27 156-182 68-95 (120)
223 PRK05888 NADH dehydrogenase su 44.0 13 0.00028 30.9 1.4 26 157-182 93-119 (164)
224 TIGR02066 dsrB sulfite reducta 42.4 8.9 0.00019 35.9 0.2 47 163-211 183-232 (341)
225 PRK00941 acetyl-CoA decarbonyl 40.1 9.7 0.00021 39.5 0.1 53 157-209 400-458 (781)
226 COG3383 Uncharacterized anaero 39.2 15 0.00032 38.1 1.2 24 156-179 187-210 (978)
227 PRK08222 hydrogenase 4 subunit 38.4 19 0.0004 30.6 1.5 28 157-184 69-97 (181)
228 PRK12387 formate hydrogenlyase 38.2 16 0.00035 30.7 1.1 26 157-182 69-95 (180)
229 PRK06273 ferredoxin; Provision 36.4 16 0.00036 30.5 0.9 21 156-176 86-106 (165)
230 PRK09625 porD pyruvate flavodo 36.4 9.5 0.00021 30.7 -0.5 20 157-176 85-104 (133)
231 COG1035 FrhB Coenzyme F420-red 35.6 17 0.00037 34.0 1.0 47 158-207 2-48 (332)
232 TIGR02176 pyruv_ox_red pyruvat 35.6 14 0.00031 40.3 0.4 21 156-176 734-754 (1165)
233 TIGR00276 iron-sulfur cluster 35.6 32 0.0007 31.3 2.7 16 196-211 162-177 (282)
234 PF07709 SRR: Seven Residue Re 35.4 24 0.00053 17.0 1.0 13 112-124 2-14 (14)
235 TIGR02912 sulfite_red_C sulfit 34.9 14 0.00031 34.0 0.3 22 155-176 195-216 (314)
236 COG2221 DsrA Dissimilatory sul 34.1 12 0.00026 34.6 -0.3 15 200-214 179-193 (317)
237 COG1600 Uncharacterized Fe-S p 33.0 45 0.00097 31.3 3.2 24 194-217 186-209 (337)
238 TIGR02064 dsrA sulfite reducta 32.6 26 0.00056 33.7 1.7 26 155-180 266-291 (402)
239 KOG3960 Myogenic helix-loop-he 32.6 35 0.00076 30.6 2.3 21 110-130 127-152 (284)
240 PRK09853 putative selenate red 32.0 18 0.00038 38.9 0.5 20 156-175 921-940 (1019)
241 PRK06991 ferredoxin; Provision 32.0 14 0.00031 33.5 -0.2 20 156-175 110-129 (270)
242 PRK09477 napH quinol dehydroge 31.8 18 0.00039 32.6 0.4 23 158-180 239-262 (271)
243 PRK08318 dihydropyrimidine deh 31.4 16 0.00034 35.0 -0.0 26 156-181 372-399 (420)
244 PRK14028 pyruvate ferredoxin o 30.0 22 0.00048 32.6 0.7 18 158-175 286-303 (312)
245 TIGR03294 FrhG coenzyme F420 h 29.7 12 0.00027 32.9 -1.0 27 156-182 198-224 (228)
246 COG2878 Predicted NADH:ubiquin 28.9 16 0.00036 31.2 -0.3 50 157-215 141-191 (198)
247 cd07030 RNAP_D D subunit of Ar 28.2 42 0.00091 29.9 2.2 26 157-182 195-221 (259)
248 PRK10076 pyruvate formate lyas 27.6 26 0.00057 30.5 0.7 28 202-231 4-31 (213)
249 TIGR02494 PFLE_PFLC glycyl-rad 27.6 21 0.00046 32.2 0.1 21 155-175 76-96 (295)
250 TIGR02910 sulfite_red_A sulfit 26.8 30 0.00066 32.4 1.0 23 160-182 219-243 (334)
251 PF13183 Fer4_8: 4Fe-4S diclus 26.7 8.4 0.00018 25.5 -2.0 15 161-175 3-17 (57)
252 PF12434 Malate_DH: Malate deh 26.6 75 0.0016 18.5 2.2 17 84-100 10-26 (28)
253 PRK07570 succinate dehydrogena 26.3 31 0.00066 30.9 0.9 18 159-176 155-172 (250)
254 TIGR03290 CoB_CoM_SS_C CoB--Co 25.5 33 0.00073 27.6 0.9 14 162-175 3-16 (144)
255 PRK15055 anaerobic sulfite red 24.5 34 0.00073 32.2 0.9 16 162-177 227-242 (344)
256 COG1152 CdhA CO dehydrogenase/ 24.4 33 0.00072 34.6 0.8 44 161-208 400-453 (772)
257 PRK13552 frdB fumarate reducta 24.2 29 0.00063 30.8 0.4 24 160-184 148-171 (239)
258 PRK09326 F420H2 dehydrogenase 24.1 35 0.00076 31.8 0.9 20 158-177 50-69 (341)
259 COG3195 Uncharacterized protei 23.6 1.7E+02 0.0036 24.8 4.6 43 79-121 41-117 (176)
260 PF10041 DUF2277: Uncharacteri 23.2 3E+02 0.0066 20.1 6.6 36 70-105 3-38 (78)
261 PRK15055 anaerobic sulfite red 23.1 35 0.00077 32.1 0.7 22 159-180 305-326 (344)
262 PLN00112 malate dehydrogenase 23.0 41 0.00089 32.8 1.2 24 68-91 74-97 (444)
263 PRK13409 putative ATPase RIL; 23.0 37 0.0008 34.2 0.9 58 157-216 6-72 (590)
264 COG1140 NarY Nitrate reductase 22.7 31 0.00068 32.9 0.3 24 157-180 10-33 (513)
265 TIGR02163 napH_ ferredoxin-typ 22.7 27 0.00058 31.2 -0.2 20 156-175 229-248 (255)
266 TIGR02910 sulfite_red_A sulfit 22.6 36 0.00077 31.9 0.6 22 159-180 299-320 (334)
267 TIGR02486 RDH reductive dehalo 22.6 47 0.001 30.8 1.4 22 195-216 207-228 (314)
268 TIGR01945 rnfC electron transp 22.1 35 0.00076 33.0 0.5 19 158-176 360-378 (435)
269 PRK12576 succinate dehydrogena 21.8 40 0.00088 30.6 0.8 18 159-176 150-167 (279)
270 TIGR00384 dhsB succinate dehyd 21.0 39 0.00085 29.3 0.5 18 159-176 136-153 (220)
271 COG1139 Uncharacterized conser 21.0 31 0.00068 33.4 -0.1 23 159-181 306-328 (459)
272 COG2879 Uncharacterized small 20.7 1.7E+02 0.0037 20.6 3.5 27 90-118 27-53 (65)
273 TIGR03287 methan_mark_16 putat 20.4 33 0.00071 32.8 -0.1 25 157-181 326-351 (391)
274 TIGR02064 dsrA sulfite reducta 20.2 47 0.001 32.0 0.9 18 198-215 247-264 (402)
275 KOG0063 RNAse L inhibitor, ABC 20.1 36 0.00079 33.3 0.1 19 156-174 45-63 (592)
276 COG0479 FrdB Succinate dehydro 20.0 81 0.0017 28.1 2.3 17 161-177 198-214 (234)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.3e-24 Score=199.11 Aligned_cols=70 Identities=44% Similarity=0.657 Sum_probs=67.0
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
+..+|||+||||+++||.+|||+|||+|+++||||+|+.+++++++|++|++||+|||||++|+.||++|
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG 70 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFG 70 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccC
Confidence 3578999999999999999999999999999999999987999999999999999999999999999885
No 2
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.4e-24 Score=188.13 Aligned_cols=93 Identities=45% Similarity=0.596 Sum_probs=82.8
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccccccccCCC
Q 024095 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNP 145 (272)
Q Consensus 66 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~~~~~ 145 (272)
.....|+|+||||+++|+.++||++||+|+++||||+++++|+++++|++||+||+||+||.+|..||.+|++.....+.
T Consensus 27 ~~~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~ 106 (279)
T KOG0716|consen 27 DVIRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQ 106 (279)
T ss_pred ccchhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHh
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999988877777
Q ss_pred CCCCCCCCCcccc
Q 024095 146 FLDDSCPKDHVFV 158 (272)
Q Consensus 146 ~~~~~~~~~~v~v 158 (272)
|.+.......++.
T Consensus 107 fg~d~~~~~~v~~ 119 (279)
T KOG0716|consen 107 FGEDSKIIYFVFS 119 (279)
T ss_pred hcccCcceEEEec
Confidence 7665554444444
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.3e-23 Score=188.22 Aligned_cols=72 Identities=38% Similarity=0.563 Sum_probs=68.9
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 66 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....+|||+||||+.+|+..|||+|||+|+++||||||+++|.+++.|+.|+.||+|||||++|+.||.+|.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE 83 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence 346789999999999999999999999999999999999999999999999999999999999999999873
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=1.5e-20 Score=176.48 Aligned_cols=69 Identities=35% Similarity=0.520 Sum_probs=65.4
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++||.+|||+|||+|+++||||+++.+++++++|++|++||+||+||.+|+.||++|.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~ 70 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK 70 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence 469999999999999999999999999999999998777889999999999999999999999999863
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=5.5e-20 Score=172.81 Aligned_cols=68 Identities=37% Similarity=0.579 Sum_probs=64.1
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ ++++++|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~-~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~ 70 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS-PDAHDKMVEINEAADVLLDKDKRKQYDQFGH 70 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-chHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence 4699999999999999999999999999999999975 6789999999999999999999999999863
No 6
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=7.4e-20 Score=173.03 Aligned_cols=69 Identities=39% Similarity=0.634 Sum_probs=65.7
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..+|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||+||+||++|+.||++|
T Consensus 7 ~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G 75 (392)
T PRK14279 7 VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETR 75 (392)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhh
Confidence 357999999999999999999999999999999999877889999999999999999999999999985
No 7
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=1.3e-19 Score=170.29 Aligned_cols=69 Identities=32% Similarity=0.525 Sum_probs=65.5
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 71 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK 71 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence 469999999999999999999999999999999998778899999999999999999999999999863
No 8
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.7e-19 Score=163.46 Aligned_cols=67 Identities=39% Similarity=0.591 Sum_probs=63.5
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..+.||+||||+++|+.+|||+|||+|+++||||||++ +.++|++|.+||+|||||++|..||++|.
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~---~~ekfkei~~AyevLsd~ekr~~yD~~g~ 68 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD---AGEKFKEISQAYEVLSDPEKREIYDQYGE 68 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHHhcCHHHHHHHHhhhh
Confidence 35689999999999999999999999999999999988 78999999999999999999999999863
No 9
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=5.1e-19 Score=166.24 Aligned_cols=69 Identities=41% Similarity=0.638 Sum_probs=64.4
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++.+ .+++++|++|++||+||+||.+|+.||.++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~ 72 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGY 72 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCc
Confidence 46999999999999999999999999999999999764 6688999999999999999999999999763
No 10
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=6.8e-19 Score=165.11 Aligned_cols=69 Identities=35% Similarity=0.525 Sum_probs=65.3
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||+||+||.+|..||.++.
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~ 70 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGH 70 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCc
Confidence 369999999999999999999999999999999998878889999999999999999999999999763
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=7.3e-19 Score=165.23 Aligned_cols=68 Identities=34% Similarity=0.621 Sum_probs=64.0
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++. +++++.|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~ 70 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA-PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGH 70 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCC
Confidence 4699999999999999999999999999999999975 6788999999999999999999999999863
No 12
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=8.4e-19 Score=165.39 Aligned_cols=69 Identities=39% Similarity=0.597 Sum_probs=65.4
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|+.||++|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~ 71 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGT 71 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCc
Confidence 369999999999999999999999999999999998777889999999999999999999999999863
No 13
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=8.5e-19 Score=165.61 Aligned_cols=68 Identities=46% Similarity=0.689 Sum_probs=65.0
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|+.||.+|
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G 71 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFG 71 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhc
Confidence 46999999999999999999999999999999999877888999999999999999999999999976
No 14
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=8.5e-19 Score=164.57 Aligned_cols=68 Identities=40% Similarity=0.633 Sum_probs=65.1
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|+.|++||+||+||.+|+.||.+|
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G 70 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYG 70 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhc
Confidence 47999999999999999999999999999999999877888999999999999999999999999986
No 15
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1e-18 Score=164.39 Aligned_cols=69 Identities=39% Similarity=0.582 Sum_probs=65.4
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.++||+|||+|+++||||++++++++++.|++|++||+||+||.+|+.||.++.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~ 71 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGH 71 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccc
Confidence 479999999999999999999999999999999998778889999999999999999999999999753
No 16
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.75 E-value=7.4e-19 Score=167.23 Aligned_cols=66 Identities=41% Similarity=0.572 Sum_probs=61.3
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...|||+||||+++||.+|||+|||+|+++||||++++ .++|++|++||+||+||.+|+.||.+|.
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~----~e~F~~i~~AYevLsD~~kR~~YD~~G~ 91 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD----PEKFKEISRAYEVLSDPEKRKIYDEYGE 91 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch----HHHHHHHHHHHHHhccHHHHHHHhhhcc
Confidence 35699999999999999999999999999999999864 4899999999999999999999999764
No 17
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=158.55 Aligned_cols=68 Identities=40% Similarity=0.667 Sum_probs=64.1
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.+++.|++|++||++|+||.+|+.||.++.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~ 70 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS-PGAEEKFKEINEAYTVLSDPEKRRIYDTYGT 70 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCC
Confidence 4699999999999999999999999999999999974 7789999999999999999999999999764
No 18
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.75 E-value=1.2e-18 Score=123.41 Aligned_cols=63 Identities=48% Similarity=0.712 Sum_probs=59.6
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchhc
Q 024095 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYD 133 (272)
Q Consensus 71 d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~f~~i~~Ay~vLsd~~~R~~YD 133 (272)
|||+||||+++++.++||++|+++++++|||+++.+. .+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999988755 57899999999999999999999998
No 19
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.2e-18 Score=164.26 Aligned_cols=68 Identities=37% Similarity=0.640 Sum_probs=64.0
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.++++|++|++||+||+||.+|+.||.+|.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~ 70 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE-PGAEEKYKEVQEAYETLSDPQKRAAYDQYGA 70 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCC
Confidence 4699999999999999999999999999999999985 6788999999999999999999999999763
No 20
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.8e-18 Score=163.00 Aligned_cols=66 Identities=36% Similarity=0.554 Sum_probs=63.3
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
.|||+||||+++|+.+|||+|||+|+++||||++++ ++++++|++|++||+||+||.+|+.||.+|
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~-~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G 68 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGG 68 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc-HHHHHHHHHHHHHHHHhchhhhhhhhhccC
Confidence 699999999999999999999999999999999984 778999999999999999999999999976
No 21
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.5e-18 Score=163.48 Aligned_cols=67 Identities=43% Similarity=0.652 Sum_probs=63.5
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ ++++++|++|++||+||+||.+|+.||++|
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G 70 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE-PDAEEKFKEISEAYAVLSDAEKRAQYDRFG 70 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC-hhHHHHHHHHHHHHHHhcchHhhhhhhhcC
Confidence 4699999999999999999999999999999999975 678899999999999999999999999976
No 22
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.6e-18 Score=163.33 Aligned_cols=67 Identities=40% Similarity=0.593 Sum_probs=63.9
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ +++++.|++|++||+||+||.+|+.||++|
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G 70 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE-EGAEEKFKEISEAYAVLSDDEKRQRYDQFG 70 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhchhHHHHHHhhhc
Confidence 5799999999999999999999999999999999985 778999999999999999999999999976
No 23
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.7e-18 Score=163.91 Aligned_cols=67 Identities=40% Similarity=0.603 Sum_probs=64.3
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
.|||+||||+++|+.+|||+|||+|+++||||++++++.+++.|++|++||+||+|+.+|+.||+++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G 67 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYG 67 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhcc
Confidence 4899999999999999999999999999999999987889999999999999999999999999876
No 24
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=1.9e-18 Score=163.30 Aligned_cols=66 Identities=44% Similarity=0.638 Sum_probs=63.5
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDE 134 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~ 134 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++.++++++.|++|++||+||+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 579999999999999999999999999999999998777889999999999999999999999998
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.5e-18 Score=161.70 Aligned_cols=68 Identities=41% Similarity=0.623 Sum_probs=64.7
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||++|+|+.+|..||.++
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g 70 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYG 70 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhcc
Confidence 46999999999999999999999999999999999877788999999999999999999999999875
No 26
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.2e-18 Score=162.68 Aligned_cols=68 Identities=44% Similarity=0.723 Sum_probs=63.9
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.++||+|||+|+++||||++++ +++++.|++|++||+||+||.+|+.||.++.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~ 69 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN-PEAEEKFKEINEAYQVLSDPEKRKLYDQFGH 69 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcc
Confidence 4699999999999999999999999999999999986 6788999999999999999999999998753
No 27
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=2.4e-18 Score=162.00 Aligned_cols=68 Identities=38% Similarity=0.585 Sum_probs=63.9
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||++++ +.+++.|++|++||+||+||.+|+.||.+|.
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~-~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~ 70 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKE-EGADEKFKEISEAYEVLSDDQKRAQYDQFGH 70 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhccHhHHHHHHhcCc
Confidence 3699999999999999999999999999999999975 6688999999999999999999999999863
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=2.9e-18 Score=162.53 Aligned_cols=68 Identities=38% Similarity=0.569 Sum_probs=64.7
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++|+.+|||+|||+|+++||||++++++++++.|++|++||+||+||.+|+.||.++.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~ 70 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGH 70 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 69999999999999999999999999999999998777888999999999999999999999999753
No 29
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.3e-18 Score=155.78 Aligned_cols=70 Identities=39% Similarity=0.593 Sum_probs=67.5
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
..|||+||||+.+++..+|++|||..+++||||||+++|.+.+.|+.|.+||+||+|+.+|..||.++..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~ 73 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKS 73 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 6799999999999999999999999999999999999999999999999999999999999999998654
No 30
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.5e-18 Score=160.31 Aligned_cols=74 Identities=38% Similarity=0.512 Sum_probs=67.0
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhcccccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSL 140 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~ 140 (272)
...+.||+||||..+|+..+||++||+|+++||||+++.. .++++.|+.|+.||+|||||..|.+||.+.....
T Consensus 5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreqil 79 (508)
T KOG0717|consen 5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQIL 79 (508)
T ss_pred hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHHHh
Confidence 3667999999999999999999999999999999998775 5689999999999999999999999998765333
No 31
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1e-17 Score=158.40 Aligned_cols=68 Identities=41% Similarity=0.562 Sum_probs=65.1
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++++++++++|++|++||++|+||.+|+.||.++
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G 71 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFG 71 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhc
Confidence 46999999999999999999999999999999999887889999999999999999999999999975
No 32
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.71 E-value=1.2e-17 Score=156.82 Aligned_cols=68 Identities=41% Similarity=0.621 Sum_probs=63.9
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++|+.+|||+|||+|+++||||+++.++ ++.+.|++|++||+||+|+.+|..||.+|.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~ 71 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGT 71 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCC
Confidence 69999999999999999999999999999999998754 688999999999999999999999999763
No 33
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.69 E-value=2e-17 Score=154.65 Aligned_cols=66 Identities=47% Similarity=0.695 Sum_probs=62.2
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 71 d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
|||+||||+++|+.++||+|||+|+++||||+++ ++++.++|++|++||+||+|+.+|..||.++.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~-~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~ 66 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNK-DKEAEEKFKEINEAYEVLSDPEKRAQYDQFGH 66 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-CccHHHHHHHHHHHHHHhhChHHHHhhhhccc
Confidence 7999999999999999999999999999999997 36688999999999999999999999999753
No 34
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.5e-17 Score=154.94 Aligned_cols=66 Identities=38% Similarity=0.560 Sum_probs=63.0
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
.|||+||||+++|+.++||+|||+|+++||||++++ ++++++|+.|++||+||+||.+|+.||.+|
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~-~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G 67 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE-KGAAEKFAQINEAYAVLSDAEKRAHYDRFG 67 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-hhHHHHHHHHHHHHHHhcchhhhhhHhhcC
Confidence 599999999999999999999999999999999975 678899999999999999999999999976
No 35
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2e-17 Score=155.58 Aligned_cols=67 Identities=34% Similarity=0.565 Sum_probs=63.0
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++|+.+|||+|||+|+++||||+++. +.+++.|++|++||++|+|+.+|+.||.+|.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~ 69 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDA-KDAEKKFKEINAAYDVLKDEQKRAAYDRFGH 69 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-cCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence 699999999999999999999999999999999874 6688899999999999999999999999763
No 36
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.9e-17 Score=149.17 Aligned_cols=68 Identities=38% Similarity=0.539 Sum_probs=64.4
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
.|||+||||+++|+..|||+||++|+|+||||.+.+ .++.+.|++|.+||+||+|+++|..||.++..
T Consensus 43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~-~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~ 110 (288)
T KOG0715|consen 43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKD-KEASKKFKEISEAYEILSDEEKRQEYDVYGLE 110 (288)
T ss_pred cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCC-cchhhHHHHHHHHHHHhcCHHHHHHHHHhhhh
Confidence 399999999999999999999999999999999998 48999999999999999999999999987654
No 37
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.68 E-value=2.8e-17 Score=150.83 Aligned_cols=67 Identities=34% Similarity=0.616 Sum_probs=63.1
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..|||+||||+++++.+|||+|||+|+++||||+++. +.+++.|++|++||++|+||.+|+.||.++
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~-~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g 69 (306)
T PRK10266 3 LKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKE-PDAEARFKEVAEAWEVLSDEQRRAEYDQLW 69 (306)
T ss_pred cCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence 3699999999999999999999999999999999875 578999999999999999999999999875
No 38
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.9e-17 Score=153.77 Aligned_cols=68 Identities=38% Similarity=0.670 Sum_probs=63.5
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++|+.+|||+|||+|+++||||+++. +.++++|++|++||+||+||.+|+.||.++.
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~-~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~ 69 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE-PGAEDRFKEINRAYEVLSDPETRARYDQFGE 69 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC-cCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence 3699999999999999999999999999999999875 6688999999999999999999999998763
No 39
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.2e-17 Score=152.35 Aligned_cols=73 Identities=37% Similarity=0.491 Sum_probs=65.9
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024095 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD---PETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 66 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~---~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
+....|||.+|+|+++|+.+|||+|||++++.|||||..+. ..+++.|+.|.+|||||+||++|+.||.+|..
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~q 80 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQ 80 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhc
Confidence 34566999999999999999999999999999999998752 34899999999999999999999999998753
No 40
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.67 E-value=1.4e-16 Score=111.17 Aligned_cols=59 Identities=42% Similarity=0.620 Sum_probs=54.6
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC-chHHHHHHHHHHHHHHHhcCccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-DPETTNFCMFINEVYAVLSDPVQ 128 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~~f~~i~~Ay~vLsd~~~ 128 (272)
.|||+||||+++++.++||++|+++++++|||++++ .+.+.+.|..|++||++|+||.+
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 489999999999999999999999999999999985 46788999999999999999853
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.66 E-value=1.1e-16 Score=161.10 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=65.8
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
....+||+||||+++|+..+||+|||+|+++||||+++++ .+.+.|+.|++||+||+||.+|+.||.+|..
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~-~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~ 640 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN-EGFHKFKKINEAYQILGDIDKKKMYNKFGYD 640 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence 4568999999999999999999999999999999999874 6788999999999999999999999998643
No 42
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.5e-17 Score=138.98 Aligned_cols=73 Identities=37% Similarity=0.495 Sum_probs=66.4
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHhcCccccchhcccccccc
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSG--DDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSL 140 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~ 140 (272)
...|+|+||||..+|+..+||+||++|++++|||+++ ...++++.|++|+.||+||+|.++|+.||+.|....
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~idd 86 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSIDD 86 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCCC
Confidence 3459999999999999999999999999999999994 446789999999999999999999999999876653
No 43
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.65 E-value=3.5e-16 Score=107.14 Aligned_cols=55 Identities=53% Similarity=0.788 Sum_probs=51.8
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024095 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 71 d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd 125 (272)
|||+||||+++++.++||++|+++++++|||+++....+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999999998755678999999999999986
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.3e-16 Score=131.73 Aligned_cols=73 Identities=29% Similarity=0.418 Sum_probs=66.9
Q ss_pred CCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 65 ~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
......|+|+||||+++++..|||+|||+|++++||||++...+.++.|..|++||+.|+|+..|..|..+|.
T Consensus 94 ~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~ 166 (230)
T KOG0721|consen 94 RERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGN 166 (230)
T ss_pred HHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCC
Confidence 4456789999999999999999999999999999999998756678899999999999999999999999864
No 45
>PHA03102 Small T antigen; Reviewed
Probab=99.61 E-value=5.7e-16 Score=127.78 Aligned_cols=65 Identities=23% Similarity=0.304 Sum_probs=59.9
Q ss_pred CCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024095 70 DDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 70 ~d~Y~vLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
+.+|+||||+++| |.++||+|||++++++|||++++ .+.|+.||+||++|+|+.+|..||.++..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~----~e~~k~in~Ay~~L~d~~~r~~yd~~g~~ 71 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGD----EEKMKELNTLYKKFRESVKSLRDLDGEED 71 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCch----hHHHHHHHHHHHHHhhHHHhccccccCCc
Confidence 4689999999999 99999999999999999999765 56899999999999999999999998653
No 46
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4e-15 Score=127.70 Aligned_cols=68 Identities=44% Similarity=0.671 Sum_probs=64.5
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchH-HHHHHHHHHHHHHHhcCccccchhccc
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE-TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~-~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
...+||+||||+++|+..+||+|||++++++|||+++.++. +.+.|..|++||++|+|+.+|..||..
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~ 72 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKI 72 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhh
Confidence 45799999999999999999999999999999999998775 899999999999999999999999985
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.55 E-value=5.1e-15 Score=146.13 Aligned_cols=67 Identities=40% Similarity=0.615 Sum_probs=63.2
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++|+.++||+|||+|++++|||+++. +.+.+.|+.|++||++|+||.+|+.||.++.
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~-~eAeekFqeINEAYEVLSDP~KRa~YD~fG~ 68 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA-PDAASIFAEINEANDVLSNPKKRANYDKYGH 68 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcc
Confidence 599999999999999999999999999999999887 6788899999999999999999999999753
No 48
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.50 E-value=3e-14 Score=120.33 Aligned_cols=66 Identities=24% Similarity=0.434 Sum_probs=58.3
Q ss_pred CCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024095 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 70 ~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
.|||+||||++. ++..+|+++||++++++|||+..+.++ +.+.+..||+||++|+||.+|+.|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999996 788999999999999999999766432 456889999999999999999999864
No 49
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.48 E-value=5e-14 Score=118.34 Aligned_cols=66 Identities=24% Similarity=0.444 Sum_probs=57.7
Q ss_pred CCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHHHHHhcCccccchhccc
Q 024095 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE---TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 70 ~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~---~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
.|||+||||++. ++..+|+++|+++++++|||++.+..+ +.+.+..||+||+||+||.+|+.|+..
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~ 72 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLL 72 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 589999999986 789999999999999999999876332 234578999999999999999999874
No 50
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.47 E-value=9.2e-14 Score=117.76 Aligned_cols=68 Identities=25% Similarity=0.423 Sum_probs=58.7
Q ss_pred CcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHH-----HHHHHHHHHHHHHhcCccccchhccc
Q 024095 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPET-----TNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~~-----~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
...|||+||||++. ++..+|+++|+++++++|||++...++. .+.+..||+||++|+||.+|..|+..
T Consensus 4 ~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 4 LKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 34799999999985 6899999999999999999998765543 34458999999999999999999963
No 51
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.46 E-value=9.9e-14 Score=117.15 Aligned_cols=68 Identities=26% Similarity=0.384 Sum_probs=60.4
Q ss_pred CcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024095 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
...|||++|||++. .+..+|+++||++++++|||++.+.++ +.+.+..||+||++|+||.+|+.|+..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 46799999999987 678999999999999999999876543 456789999999999999999999974
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.44 E-value=1.4e-13 Score=125.51 Aligned_cols=68 Identities=32% Similarity=0.472 Sum_probs=62.8
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcCccccchhccc
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~---~~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
..+|||.||||.++|+..||.+|||+++.+||||-..+.. .++++|..|..|-+||+||++|+.||..
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnG 462 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNG 462 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCC
Confidence 5689999999999999999999999999999999988744 3788999999999999999999999974
No 53
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.40 E-value=4e-13 Score=105.58 Aligned_cols=55 Identities=29% Similarity=0.405 Sum_probs=49.1
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhc
Q 024095 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLS 124 (272)
Q Consensus 66 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLs 124 (272)
.+...++|+||||+++++.+|||++||+|++++|||++++ .+.+++|++||++|.
T Consensus 61 ~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs----~~~~~kIneAyevL~ 115 (116)
T PTZ00100 61 PMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS----TYIASKVNEAKDLLL 115 (116)
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHh
Confidence 3455799999999999999999999999999999999644 567889999999995
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.6e-13 Score=125.44 Aligned_cols=68 Identities=28% Similarity=0.369 Sum_probs=64.3
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
....|+|.+|||+.+++.++||+.||+++...|||||-. +.++|.|+.|+.||++|+|+.+|..||..
T Consensus 232 ~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~-~~A~Eafk~Lq~Afevig~~~kR~eYd~e 299 (490)
T KOG0720|consen 232 LNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI-PRAEEAFKKLQVAFEVIGDSVKRKEYDLE 299 (490)
T ss_pred hcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC-hhHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 347899999999999999999999999999999999994 88999999999999999999999999964
No 55
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=5.9e-13 Score=116.34 Aligned_cols=68 Identities=34% Similarity=0.535 Sum_probs=62.8
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
...|.|+||||.++++..+|.+|||+|++++|||++++ ++..+.|..|..||++|.|...|..||-..
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~-~e~k~~F~~iAtayeilkd~e~rt~ydyal 98 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRD-PESKKLFVKIATAYEILKDNETRTQYDYAL 98 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCC-chhhhhhhhhhcccccccchhhHHhHHHHh
Confidence 35699999999999999999999999999999999998 566799999999999999999999999643
No 56
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=99.31 E-value=1e-12 Score=93.65 Aligned_cols=59 Identities=39% Similarity=0.725 Sum_probs=49.0
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccC--------CCCHHHHHHHHHhCccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--------CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q--------~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+.+|+..||||+.|...+|++|.++++ |.+.+... .++++.+++|+.+||++||+|.+
T Consensus 2 ~v~vDrd~Cigcg~C~~~aPdvF~~~d~-G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v~~ 68 (68)
T COG1141 2 RVIVDRDTCIGCGACLAVAPDVFDYDDE-GIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKVEE 68 (68)
T ss_pred EEEechhhccccchhhhcCCcceeeCCC-cceEeccCccccccCChHHHHHHHHHHHhCCccceEecC
Confidence 4678999999999999999999999988 87755322 23346899999999999999863
No 57
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=99.28 E-value=8.4e-13 Score=91.95 Aligned_cols=55 Identities=42% Similarity=0.733 Sum_probs=40.8
Q ss_pred cCcccccccCcccCCCCcceeecccccceEEccCC---CCHHHHHHHHHhCccccccc
Q 024095 158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQC---GINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~---g~~e~i~~Av~~CP~~aI~~ 212 (272)
||...||+||.|..++|++|.++++.|.+.++.|. .+.+.+++|+++||++||++
T Consensus 1 VD~~~Ci~Cg~C~~~aP~vF~~~d~~~~~~v~~~~~~~~~~~~~~~A~~~CP~~aI~v 58 (58)
T PF13370_consen 1 VDRDKCIGCGLCVEIAPDVFDYDDDGGKAVVLDQPVPEEEEEAAREAAESCPTAAIRV 58 (58)
T ss_dssp E-TTT--S-SHHHHH-TTTEEEETTSTEEECTTCCCSHCHHHHHHHHHHHSTT--EEE
T ss_pred CChhhCcCCChHHHhCcHheeEcCCCCeEEEeCCCcChHHHHHHHHHHHcCCHhhcCC
Confidence 57778999999999999999999986788788873 23468999999999999985
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.27 E-value=5.2e-12 Score=113.86 Aligned_cols=59 Identities=25% Similarity=0.379 Sum_probs=52.2
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC---c----hHHHHHHHHHHHHHHHhcC
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD---D----PETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~----~~~~~~f~~i~~Ay~vLsd 125 (272)
....++|+||||++++|.++||++||+|+++||||+..+ + +.++++|++|++||++|+.
T Consensus 197 ~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 197 PTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred CcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999999999999999643 1 3478999999999999985
No 59
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=4.8e-12 Score=113.48 Aligned_cols=69 Identities=38% Similarity=0.563 Sum_probs=62.3
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||.||||.++|+.++|++||+++++++|||+++.. ..+...|.+|.+||++|+|+.+|..||.++.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~ 71 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE 71 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence 46999999999999999999999999999999998774 2345579999999999999999999999875
No 60
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=99.23 E-value=5e-12 Score=89.99 Aligned_cols=56 Identities=46% Similarity=0.825 Sum_probs=48.4
Q ss_pred cccCcccccccCcccCCCCcceeecccccceEEccC---------CCCHHHHHHHHHhCccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ---------CGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q---------~g~~e~i~~Av~~CP~~aI~~ 212 (272)
+.+|+..|+||+.|...+|++|.++++ |.+.++.. ..+.+.+++|++.||++||+|
T Consensus 1 V~vD~~~C~gcg~C~~~aP~vF~~d~~-g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~v 65 (65)
T PF13459_consen 1 VWVDRDRCIGCGLCVELAPEVFELDDD-GKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIHV 65 (65)
T ss_pred CEEecccCcCccHHHhhCCccEEECCC-CCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEEC
Confidence 468999999999999999999999988 88766642 345679999999999999986
No 61
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.8e-12 Score=116.67 Aligned_cols=68 Identities=32% Similarity=0.557 Sum_probs=64.3
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccc
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
+..|||.|||+..+++..+||+|||++++.+|||++... .+++..|+++-+||.+|+||.+|..||..
T Consensus 371 kRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 371 KRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred hhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 578999999999999999999999999999999999876 67889999999999999999999999974
No 62
>PHA02624 large T antigen; Provisional
Probab=99.22 E-value=8.3e-12 Score=122.19 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=56.1
Q ss_pred cCCcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchh
Q 024095 69 ADDYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVY 132 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~Y 132 (272)
.+++|++|||+++| +.++||+|||++++++|||++++ ++.|++||+||++|+|+.+|..|
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd----eekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD----EEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc----HHHHHHHHHHHHHHhcHHHhhhc
Confidence 45899999999999 99999999999999999999754 67899999999999999999998
No 63
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.18 E-value=3.7e-11 Score=101.52 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=57.1
Q ss_pred CCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhcc
Q 024095 70 DDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDE 134 (272)
Q Consensus 70 ~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vLsd~~~R~~YD~ 134 (272)
.|||++|||++. .+..++++.|+++++++|||+....++ +.+....||+||.+|+||.+|+.|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 699999999986 899999999999999999999866432 34567889999999999999999954
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.7e-11 Score=108.16 Aligned_cols=121 Identities=26% Similarity=0.324 Sum_probs=89.4
Q ss_pred CCCCCCcCCcccccCcCC---CCCHHHHHHHHHHHHHHhCCCCCC--CchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 63 ASTDAIADDYYAVLGLLP---DATPEQIKKAYYNCMKACHPDLSG--DDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 63 ~~~~~~~~d~Y~vLgv~~---~a~~~~Ik~ayr~l~~~~HPD~~~--~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...++...|+|.+|||+. .+++.+|.+++++.+.+||||+.. ++-...++|..|+.||+||+|+.+|.+||..
T Consensus 36 d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~-- 113 (379)
T COG5269 36 DFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSN-- 113 (379)
T ss_pred hhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccc--
Confidence 455678899999999994 689999999999999999999972 2345688999999999999999999999984
Q ss_pred cccccCCCCCCCCCCCCccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHH
Q 024095 138 YSLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQ 200 (272)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~ 200 (272)
+++...+....+.+... ..+...+|+-+..|.....++..|..+....
T Consensus 114 --------df~advppp~~~t~~~F-------fe~w~pvFe~earFSkKqPvPsLg~~dss~k 161 (379)
T COG5269 114 --------DFDADVPPPRIYTPDEF-------FEVWEPVFEREARFSKKQPVPSLGPSDSSLK 161 (379)
T ss_pred --------ccccCCCCccCCCchhH-------HHHHHHHHHhhhhccccCCCCCCCCchhHHH
Confidence 22222233333333222 2455677888888888777777666554333
No 65
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.08 E-value=6.9e-11 Score=110.65 Aligned_cols=69 Identities=28% Similarity=0.338 Sum_probs=62.8
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC-----chHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD-----DPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~-----~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..-|+|||||++.+++..+||++||+|+.+|||||.+. ..+-++.+.+|++||..|+|...|..|-.+|
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yG 169 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYG 169 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcC
Confidence 45699999999999999999999999999999999876 2457888999999999999999999998774
No 66
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.98 E-value=8.3e-10 Score=92.04 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCch-----HHHHHHHHHHHHHHHhcCccccchhccc
Q 024095 81 DATPEQIKKAYYNCMKACHPDLSGDDP-----ETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 81 ~a~~~~Ik~ayr~l~~~~HPD~~~~~~-----~~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
+.+..+|+++|+++++++|||+..+.. .+.+.+..||+||++|+||.+|+.|+..
T Consensus 2 ~iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 2 QLDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 357899999999999999999965532 2567889999999999999999999975
No 67
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.8e-09 Score=91.53 Aligned_cols=68 Identities=25% Similarity=0.322 Sum_probs=61.1
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhc
Q 024095 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYD 133 (272)
Q Consensus 66 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsd~~~R~~YD 133 (272)
..-..|+|+||.|.++.+.++||+.||+|++..|||+|+++ +-+...|-.|.+||..|-|+..|..-+
T Consensus 49 tyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 49 TYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 35678999999999999999999999999999999999998 558889999999999999998766543
No 68
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.9e-07 Score=70.57 Aligned_cols=61 Identities=28% Similarity=0.378 Sum_probs=52.7
Q ss_pred CCCCCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCc
Q 024095 62 SASTDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDP 126 (272)
Q Consensus 62 ~~~~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~ 126 (272)
.+.+.+.....-.||||.+.++.+.||.|+|+++...|||+.++ | -.-.+||||+++|...
T Consensus 48 GF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGS-P---YlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 48 GFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGS-P---YLASKINEAKDLLEGT 108 (112)
T ss_pred ccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCC-H---HHHHHHHHHHHHHhcc
Confidence 45666777888899999999999999999999999999999988 2 3346799999999754
No 69
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.7e-07 Score=94.14 Aligned_cols=59 Identities=22% Similarity=0.383 Sum_probs=50.1
Q ss_pred CCCCCcCCcccccCcCC----CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024095 64 STDAIADDYYAVLGLLP----DATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 64 ~~~~~~~d~Y~vLgv~~----~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd 125 (272)
+..+...+.|+||.|+- ....+.||++|++|+.+||||||+. ..++|..+|+||+.|..
T Consensus 1275 P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE---GRemFe~VnKAYE~L~~ 1337 (2235)
T KOG1789|consen 1275 PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE---GREMFERVNKAYELLSS 1337 (2235)
T ss_pred CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHHH
Confidence 34456668999999984 3456899999999999999999965 78999999999999983
No 70
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=4.5e-07 Score=78.83 Aligned_cols=57 Identities=21% Similarity=0.443 Sum_probs=50.5
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHH-HhcC
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYA-VLSD 125 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~-vLsd 125 (272)
.-..+|.||||..+++.++++.+|..|++++|||...+ ....+.|.+|.+||. ||+.
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~-~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSE-EADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCc-cccHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999999999999998766 455788999999999 7764
No 71
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=97.87 E-value=1.2e-05 Score=57.00 Aligned_cols=58 Identities=26% Similarity=0.370 Sum_probs=47.7
Q ss_pred CccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
-.+..|...|++-|.|....|.+|...++ |-. .....+.+.+.++++.||.+||.+.+
T Consensus 6 i~V~~d~~~C~hag~Cv~~~p~VFd~~~~-~~v--~~d~a~~~~v~~~v~~CPSGAL~~~~ 63 (64)
T PF06902_consen 6 ITVTWDRERCIHAGFCVRGAPEVFDQDDE-PWV--SPDEASAEEVREAVDRCPSGALSYWD 63 (64)
T ss_pred EEEEECcCcccchhhhhcCCCCcccCCCC-CcC--CcCccCHHHHHHHHHcCCccCcEEee
Confidence 34667889999999999999999999876 433 33355678999999999999998764
No 72
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=7.6e-05 Score=61.31 Aligned_cols=68 Identities=24% Similarity=0.467 Sum_probs=55.2
Q ss_pred CCcCCcccccCcC--CCCCHHHHHHHHHHHHHHhCCCCCCCc-----hHHHHHHHHHHHHHHHhcCccccchhcc
Q 024095 67 AIADDYYAVLGLL--PDATPEQIKKAYYNCMKACHPDLSGDD-----PETTNFCMFINEVYAVLSDPVQRMVYDE 134 (272)
Q Consensus 67 ~~~~d~Y~vLgv~--~~a~~~~Ik~ayr~l~~~~HPD~~~~~-----~~~~~~f~~i~~Ay~vLsd~~~R~~YD~ 134 (272)
....+||.++|.. ...+++.++.-|....++.|||+.+.. ..+.+....||+||.+|.||-.|+.|=.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3556899999865 456778888899999999999985441 2367778999999999999999999954
No 73
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.18 E-value=9.2e-05 Score=62.55 Aligned_cols=66 Identities=27% Similarity=0.541 Sum_probs=45.3
Q ss_pred CCccccCcccccccCcccCCCC-cceeeccc----ccceEEcc-C--CCCHHHHHHHHHhCcccccccccchhh
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEED----FGRARVYN-Q--CGINEFVQQAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap-~~F~~e~d----~g~a~v~~-q--~g~~e~i~~Av~~CP~~aI~~~~~~~l 218 (272)
.+...++...||||+.|..+|| +...|+.+ .|..+... + .|-.-.+.-+++.|||+||.....-++
T Consensus 47 RG~~~l~~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~~~~In~grCIfCg~C~e~CPt~Al~~t~~~e~ 120 (172)
T COG1143 47 RGRHVLDRDKCIGCGLCANICPANAITMETAERKVDGRKKPKRPDINLGRCIFCGLCVEVCPTGALVLTPEFEL 120 (172)
T ss_pred cceeeccccCCcchhHHHhhCCcCceEEEEcccCCCCccccccceeccccccccCchhhhCchhhhcCCcceee
Confidence 3445667788999999999999 56666532 13333222 1 455556779999999999997665433
No 74
>COG1146 Ferredoxin [Energy production and conversion]
Probab=97.14 E-value=0.0002 Score=51.04 Aligned_cols=60 Identities=30% Similarity=0.471 Sum_probs=44.2
Q ss_pred cccCcccccccCcccCCCC-cceeeccc-ccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 156 VFVDEFSCIGCKNCNNVAP-EVFKIEED-FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap-~~F~~e~d-~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
..+|...|+||+.|..++| .+|.+.++ .+...+++. .+.-.....+..||++||.+....
T Consensus 3 ~~Id~~~C~~c~~C~~~CP~~~~~~~~~~~~~~~~~~~-e~C~~C~~C~~~CP~~aI~~~~~~ 64 (68)
T COG1146 3 IVIDYDKCIGCGICVEVCPAGVFDLGEDEGGKPVVARP-EECIDCGLCELACPVGAIKVDILR 64 (68)
T ss_pred eEECchhcCCCChheeccChhhEEeccccCcceeEecc-ccCccchhhhhhCCcceEEEeccc
Confidence 3578888999999999999 67888764 244444443 333347799999999999976553
No 75
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.14 E-value=3.8e-05 Score=53.49 Aligned_cols=53 Identities=28% Similarity=0.581 Sum_probs=29.0
Q ss_pred ccCcccccccCcccCCCCc----ceeecccccceEEccCCCCHHHHHHHHHhCcc-ccccc
Q 024095 157 FVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQCGINEFVQQAIESCPV-DCIHR 212 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~----~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~-~aI~~ 212 (272)
.+|+..|||||.|...+|. .+.++++ +... +. .....-....+..||| +||++
T Consensus 2 ~Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~-~~~~-v~-~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 2 VIDEDKCIGCGKCVRACPDGAIDAIEVDEG-KKVP-VN-PDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp EE-TTT----SCCCHHCCCCS-S-ECCTTT-TSSE-CE--TT--S-SCCCCCSSSTTSEEE
T ss_pred EECcccccChhhHHhHcCccceeeEEecCC-eeEE-ec-cccCcCcCcccccCCCccCCCC
Confidence 4688999999999999994 3434433 2222 22 2333445578899998 99974
No 76
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=97.10 E-value=0.0001 Score=49.96 Aligned_cols=48 Identities=29% Similarity=0.666 Sum_probs=29.2
Q ss_pred cccccCcccCCCC-cceeecccccceEEccCCC------CHHHHHHHHHhCccccc
Q 024095 162 SCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCG------INEFVQQAIESCPVDCI 210 (272)
Q Consensus 162 ~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g------~~e~i~~Av~~CP~~aI 210 (272)
+||+|+.|..++| .++.++.. +......... ........++.||++||
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~-~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDED-GGKKVVDKDNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETT-TTCEECSECCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCeEccCc-cccccccccccCCCCCccccHhHHHHHcchhhC
Confidence 4999999999999 55666554 3333333221 33456689999999998
No 77
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=97.07 E-value=0.00013 Score=61.09 Aligned_cols=69 Identities=28% Similarity=0.448 Sum_probs=46.6
Q ss_pred CCccccCcccccccCcccCCCC-cceeeccc----ccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhH
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEED----FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap-~~F~~e~d----~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~l 221 (272)
.+.+.||+.+|||||.|..+|| ..+.|... -+.+..-+.-.+.+.-...+.+||++|+..++...+..+
T Consensus 74 ~~~v~V~~ekCiGC~~C~~aCPfGai~~~~~~~~~~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~~~~~~~~ 147 (165)
T COG1142 74 DGAVQVDEEKCIGCKLCVVACPFGAITMVSYPVAAKAVAVKCDLCAGREVGPACVEACPTEALELVDEIVLERL 147 (165)
T ss_pred CCceEEchhhccCcchhhhcCCcceEEEEeecCcchhhhhhcccccCccCCCceeeeCCHHHhhcccHHHhhhh
Confidence 5678899999999999999999 44555542 012222222222222267899999999999988764433
No 78
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=96.92 E-value=0.00051 Score=54.48 Aligned_cols=61 Identities=23% Similarity=0.561 Sum_probs=43.4
Q ss_pred CCccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
...+.++...|++|+.|..+||. .+.+.++.+. ..+. .+....+..+++.||++||.+...
T Consensus 34 ~g~i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~~-~~i~-~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 34 RGKILYDVDKCVGCRMCVTVCPAGVFVYLPEIRK-VALW-TGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred cceEEECcccCcCcccHHHHCCccceEccccccc-eEec-CCcCcChhhhHHhCCcCcEEeccc
Confidence 34567888999999999999994 4555443122 2222 344556779999999999998764
No 79
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.84 E-value=0.00031 Score=54.31 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=45.5
Q ss_pred CccccCcccccccCcccCCCCc-ceeeccccc----ce-EEccCCCCHHHHHHHHHhCcccccccccchh--hhhHH
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFG----RA-RVYNQCGINEFVQQAIESCPVDCIHRTSAQQ--LSLLE 222 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~-~F~~e~d~g----~a-~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~--l~~le 222 (272)
..+.+|...|++|+.|..+||. .|.+.++-. .. .++. .+....+..++..||++||.+....+ +..|+
T Consensus 9 ~~v~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~~~~~~~i~-~~~C~~C~~C~~~CP~~AI~~~~~~~~~~~~~~ 84 (103)
T PRK09626 9 TPVWVDESRCKACDICVSVCPAGVLAMRIDPHAVLGKMIKVVH-PESCIGCRECELHCPDFAIYVADRKEFKFAKLS 84 (103)
T ss_pred CCeEECcccccCCcchhhhcChhhhccccccccccCceeeEeC-CccCCCcCcchhhCChhhEEEecccceeehhcc
Confidence 4466788999999999999994 666654311 11 1222 22334567899999999999987653 33444
No 80
>CHL00065 psaC photosystem I subunit VII
Probab=96.69 E-value=0.00043 Score=50.98 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=38.7
Q ss_pred ccCcccccccCcccCCCC-cceeeccccc---ceE-EccCCCCHHHHHHHHHhCcccccccccc
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFG---RAR-VYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~d~g---~a~-v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.++...|++|+.|..++| +.+.++++.+ ... .....+.......++..||++||.+...
T Consensus 5 ~~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~~ 68 (81)
T CHL00065 5 VKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred cCccccCCChhHHHHHCCccchhheeccccccccccccCCCCcCCChhhhhhhcCccccEEEEE
Confidence 445678999999999999 5566654211 111 1111233334578999999999997654
No 81
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=96.62 E-value=0.0011 Score=53.72 Aligned_cols=65 Identities=20% Similarity=0.425 Sum_probs=46.5
Q ss_pred cccCcccccccC-----cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhH
Q 024095 156 VFVDEFSCIGCK-----NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 156 v~vDe~~CigC~-----~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~l 221 (272)
.++++..|++|+ .|..+||. .+.++++...+..+. ......+..++..||++||.+....++..+
T Consensus 3 ~~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~~~~~~id-~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~ 73 (132)
T TIGR02060 3 TFVYPTKCDGCKAGEKTACVYICPNDLMHLDTEIMKAYNIE-PDMCWECYSCVKACPQGAIDVRGYADFAPL 73 (132)
T ss_pred CEEccccccCccCCchhcCHhhcCccceEecCCCceeeecC-chhCccHHHHHHhCCcCceEEECccccccc
Confidence 467889999999 99999994 465655322333332 233345779999999999999877766544
No 82
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.61 E-value=0.001 Score=57.53 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=46.7
Q ss_pred CCccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchhhhhH
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~l~~l 221 (272)
.+.+.+|...||||+.|...|| ..-.++.+.+.+..-. .-.+.+. .+|++||++|+.+-+.+|++..
T Consensus 92 dGiV~vd~d~CIGC~yCi~ACPyga~~~~~~~~~~~KCt--~C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~~~ 164 (203)
T COG0437 92 DGIVLVDKDLCIGCGYCIAACPYGAPQFNPDKGVVDKCT--FCVDRVAVGKLPACVEACPTGALIFGDIDDPKSK 164 (203)
T ss_pred CCEEEecCCcccCchHHHhhCCCCCceeCcccCcccccC--cchhhHhcCCCCcccccCCcccccccchhhcchh
Confidence 5567899999999999999999 4444455434332221 1122222 6899999999999888877654
No 83
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=96.61 E-value=0.00039 Score=53.42 Aligned_cols=63 Identities=27% Similarity=0.554 Sum_probs=37.6
Q ss_pred CCccccCcccccccCcccCCCC-cceeecccccceEEccCCCCH---HHHHHHHHhCcccccccccc
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGIN---EFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~---e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.+.+|+..|+||+.|...+| ....++.+.+.+..-+--.+. ...-..+.+||++||.+.++
T Consensus 32 ~G~V~id~~~CigC~~C~~aCP~~ai~~~~~~~~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~r 98 (98)
T PF13247_consen 32 DGIVVIDEDKCIGCGYCVEACPYGAIRFDPDTGKARKCDLCIDRIEEGEEPACVEACPTGALTFGDR 98 (98)
T ss_dssp TS-EEE-TTTCCTHHHHHHH-TTS-EEEETTTTCEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE-
T ss_pred CCeEEechhhccCchhhhhhhccCcceeecccccCCcCceehhhhhcCCCChhHHhccccceEEecC
Confidence 4567889999999999999999 566677665655433321111 12247899999999988653
No 84
>PLN00071 photosystem I subunit VII; Provisional
Probab=96.56 E-value=0.00069 Score=49.82 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=39.6
Q ss_pred cccCcccccccCcccCCCC-cceeeccccc-ceEEc---cCCCCHHHHHHHHHhCcccccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFG-RARVY---NQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap-~~F~~e~d~g-~a~v~---~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+++...|++|+.|..++| +.+.+++..+ ..... ...+.......+++.||++||.+...
T Consensus 4 ~~~~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~ 68 (81)
T PLN00071 4 PVKIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQIASAPRTEDCVGCKRCESACPTDFLSVRVY 68 (81)
T ss_pred CeEcCCcCcChhHHHHHCCccceeeecccccccccccCcCCCCcCcChhhHHhhcCCccceEeee
Confidence 4556678999999999999 5566654212 11111 11233445679999999999987543
No 85
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0013 Score=55.63 Aligned_cols=54 Identities=30% Similarity=0.395 Sum_probs=45.7
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-------hHHHHHHHHHHHHHHHh
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-------PETTNFCMFINEVYAVL 123 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-------~~~~~~f~~i~~Ay~vL 123 (272)
.+.|.+||+...++..+|+++|+++...+|||+.... ..+.+.++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999985331 13667788899998753
No 86
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=96.47 E-value=0.0011 Score=49.67 Aligned_cols=60 Identities=23% Similarity=0.432 Sum_probs=39.3
Q ss_pred CccccCcccccccCcccCCCC-cceeecc--ccc----------c---e-EEccCCCCHHHHHHHHHhCcccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEE--DFG----------R---A-RVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~--d~g----------~---a-~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
..+.+|...|++|+.|..++| ..+.+.. +.+ . . ......+.......++..||++||.++
T Consensus 14 ~~~~i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 14 FVTSIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred eeEEECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence 346678999999999999998 4555542 001 1 0 111123334456789999999999865
No 87
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.35 E-value=0.0014 Score=49.12 Aligned_cols=59 Identities=29% Similarity=0.340 Sum_probs=39.9
Q ss_pred CccccCcccccccCcccCCCCcc-eeecccccce-EEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRA-RVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~~-F~~e~d~g~a-~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..+.+|+..|++|+.|+..||+. +.+.++.... .-++- ..=+--++..||++||.++..
T Consensus 28 ~rPv~d~~kCi~C~~C~~yCPe~~i~~~~~~~~~~idYdy---CKGCGICa~vCP~kaI~Mv~E 88 (91)
T COG1144 28 FRPVVDEDKCINCKLCWLYCPEPAILEEEGGYKVRIDYDY---CKGCGICANVCPVKAIEMVRE 88 (91)
T ss_pred EeeEEcccccccCceeEEECCchheeeccCCccceeEccc---ccCceechhhCChhheEeEee
Confidence 34578999999999999999966 5555442222 11111 112337889999999998764
No 88
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=96.34 E-value=0.01 Score=52.53 Aligned_cols=62 Identities=19% Similarity=0.414 Sum_probs=41.4
Q ss_pred CccccCcccccccCcccCCCCc---ceeec--ccccceEEccC-------CCCHHHHHHHHHhCcccccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPE---VFKIE--EDFGRARVYNQ-------CGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~---~F~~e--~d~g~a~v~~q-------~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..+.+|...|++|+.|..+|+. .+.++ ...+...+... ......+..+++.||++||.....
T Consensus 139 ~~i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~ 212 (234)
T PRK07569 139 PRFGIDHNRCVLCTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS 212 (234)
T ss_pred CcEEeehhhCcCccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC
Confidence 4566789999999999999984 23332 22123333321 113345679999999999988766
No 89
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.33 E-value=0.0016 Score=50.49 Aligned_cols=58 Identities=26% Similarity=0.454 Sum_probs=40.9
Q ss_pred ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.++...|++|+.|...+|. .+.++++ +.. +++ .+....+..+++.||++||.+...
T Consensus 45 ~p~i~~~~Ci~C~~C~~~CP~~ai~~~~~-~~~-~id-~~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09623 45 MPVVDESKCVKCYICWKFCPEPAIYIKED-GYV-AID-YDYCKGCGICANECPTKAITMVKE 103 (105)
T ss_pred eEEECcccCccccchhhhCCHhheEecCC-CcE-EeC-chhCcCcchhhhhcCcCcEEeccc
Confidence 456788999999999999985 4555543 322 222 222334668999999999988754
No 90
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=96.22 E-value=0.0017 Score=47.67 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=38.2
Q ss_pred ccCcccccccCcccCCCC-cceeecccccc--eEE-c-cCCCCHHHHHHHHHhCccccccccc
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGR--ARV-Y-NQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~d~g~--a~v-~-~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
+.+...|++|+.|..++| ..+.+++..+. ..+ . ...+.......+++.||++||.+..
T Consensus 4 ~~~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 66 (80)
T TIGR03048 4 VKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCESACPTDFLSVRV 66 (80)
T ss_pred eecCCcCcCcchHHHHCCccceeeecccccccccccCcCCCCcCcChhHHHHhcCcccCEEEE
Confidence 445667999999999999 55666542121 111 1 1123344567999999999998744
No 91
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=96.12 E-value=0.0033 Score=53.67 Aligned_cols=66 Identities=24% Similarity=0.524 Sum_probs=42.1
Q ss_pred CccccCcccccccCcccCCCCcc-eeeccccc----c---eEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFG----R---ARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~~-F~~e~d~g----~---a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
..+.++...|++|+.|..+||.. +.+..+.+ . .......+....+..+++.||++||.+....++.
T Consensus 55 G~i~~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~~ 128 (183)
T TIGR00403 55 GRIHFEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS 128 (183)
T ss_pred ceEEeCcccCcCcCChhhhCCCCcccccccccccccccccceeecCcccccCcCchhhhcCCCCeecccccccc
Confidence 45667888999999999999953 22111100 0 0111113344566799999999999987655443
No 92
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.003 Score=53.49 Aligned_cols=64 Identities=28% Similarity=0.408 Sum_probs=50.1
Q ss_pred CcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhcc
Q 024095 71 DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDE 134 (272)
Q Consensus 71 d~Y~vLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vLsd~~~R~~YD~ 134 (272)
+++.++|....+ ..+.++..|+.+++.+|||+....++ +.+.+..+|.||.+|.||-.|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 455556666543 56778999999999999999877443 34577889999999999999999843
No 93
>PRK13984 putative oxidoreductase; Provisional
Probab=96.08 E-value=0.0022 Score=64.19 Aligned_cols=60 Identities=20% Similarity=0.500 Sum_probs=38.6
Q ss_pred cccCcccccccCcccCCCCcc-eeec------ccccceE--EccCCCCHHHHHHHHHhCcccccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV-FKIE------EDFGRAR--VYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~-F~~e------~d~g~a~--v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
+.+|...|++|+.|..+||.. +.+. +.+|... .......+..+..+++.||++||++...
T Consensus 40 ~~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i~~~~c~~c~~c~~~Cp~~Ai~~~~~ 108 (604)
T PRK13984 40 HINDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVIDYGRCSFCALCVDICTTGSLKMTRE 108 (604)
T ss_pred cccChhhCcCccchhhhCCccceEeeccccccccccccccccccCcccCcCcchHHhhCCcCcEEecce
Confidence 456888999999999999932 3222 2223221 1111222345678999999999998653
No 94
>PRK06991 ferredoxin; Provisional
Probab=96.08 E-value=0.0028 Score=57.41 Aligned_cols=60 Identities=23% Similarity=0.478 Sum_probs=40.7
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
..+.+|+..|++|+.|..+|| +.+.+.++ +. ..+. ......+..++..||++||.+....
T Consensus 78 ~~~~id~~~CigCg~Cv~aCP~~AI~~~~~-~~-~~v~-~~~CigCg~Cv~vCP~~AI~~~~~~ 138 (270)
T PRK06991 78 AVAVIDEQLCIGCTLCMQACPVDAIVGAPK-QM-HTVL-ADLCTGCDLCVPPCPVDCIDMVPVT 138 (270)
T ss_pred ceeEEccccCCCCcHHHHhCCHhheecccc-cc-eeeC-HhhCCCchHHHhhCCcCCeEeecCc
Confidence 345678899999999999999 33444332 22 1221 2334456789999999999876543
No 95
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=96.08 E-value=0.0022 Score=58.48 Aligned_cols=69 Identities=19% Similarity=0.308 Sum_probs=45.8
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCH---HHHHHHHHhCcccccccccchhhhhHH
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGIN---EFVQQAIESCPVDCIHRTSAQQLSLLE 222 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~---e~i~~Av~~CP~~aI~~~~~~~l~~le 222 (272)
..+.+|...|+||+.|..+|| +...+++..+.+..-....+. ...-.++.+||++||.+.+.+++....
T Consensus 117 G~V~id~dkCigC~~Cv~aCP~~a~~~~~~~~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~~a 189 (283)
T TIGR01582 117 GIVDFDHSKCIGCGYCIVGCPFNIPRYDKVDNRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKERA 189 (283)
T ss_pred CcEEEeHHHCCcchHHHhhCCCCCcEEcCCCCChhhhcccccccccCCCChHhCcccHhhEEECCHHHHHHHH
Confidence 456789999999999999998 456665532322111101110 011268999999999999988776554
No 96
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=96.05 E-value=0.012 Score=47.21 Aligned_cols=58 Identities=19% Similarity=0.242 Sum_probs=40.6
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCcc
Q 024095 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPV 127 (272)
Q Consensus 66 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~ 127 (272)
.+....-..||||++..+.++|.+.|.+|....+|+++++ .-.-.+|..|.+.|....
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGS----fYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGS----FYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-----HHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCC----HHHHHHHHHHHHHHHHHH
Confidence 3555678899999999999999999999999999998877 344456888888886443
No 97
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=96.04 E-value=0.0014 Score=54.47 Aligned_cols=75 Identities=27% Similarity=0.340 Sum_probs=44.9
Q ss_pred ccccCCCCCCCCCCCCccccCcccccccCcccCCCC-cceeec--c-cccceEEccCCCCH---HHHHHHHHhCcccccc
Q 024095 139 SLIATNPFLDDSCPKDHVFVDEFSCIGCKNCNNVAP-EVFKIE--E-DFGRARVYNQCGIN---EFVQQAIESCPVDCIH 211 (272)
Q Consensus 139 ~~~~~~~~~~~~~~~~~v~vDe~~CigC~~C~~~ap-~~F~~e--~-d~g~a~v~~q~g~~---e~i~~Av~~CP~~aI~ 211 (272)
.....++-+.++-.....-..+..||.|+.|..+|| +...++ + ..|..+..+=+-|. .-+-.++++|||+||.
T Consensus 89 EKgplS~RFRGehalrRyp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqEaCPvdaiv 168 (212)
T KOG3256|consen 89 EKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 (212)
T ss_pred ccCCCCcccccchhhhcCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhhhCCcccee
Confidence 333445555444444455667888999999999998 333333 2 12433333222222 2344788999999997
Q ss_pred cc
Q 024095 212 RT 213 (272)
Q Consensus 212 ~~ 213 (272)
..
T Consensus 169 eg 170 (212)
T KOG3256|consen 169 EG 170 (212)
T ss_pred cc
Confidence 53
No 98
>PRK02651 photosystem I subunit VII; Provisional
Probab=96.01 E-value=0.0025 Score=46.70 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=36.0
Q ss_pred CcccccccCcccCCCC-cceeecccc-cceEEc---cCCCCHHHHHHHHHhCccccccccc
Q 024095 159 DEFSCIGCKNCNNVAP-EVFKIEEDF-GRARVY---NQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 159 De~~CigC~~C~~~ap-~~F~~e~d~-g~a~v~---~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
....|++|+.|..++| ..+.+++.. +....+ ...+.......+++.||++||.+..
T Consensus 7 ~~~~Ci~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~ 67 (81)
T PRK02651 7 IYDTCIGCTQCVRACPLDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRV 67 (81)
T ss_pred ccccCCCcchHHHHCCccceecccccccccCcccccCCCCcCCChhhhhhhcCCCceEEEE
Confidence 4567999999999999 556654321 111111 1123334567899999999999743
No 99
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=95.99 E-value=0.0017 Score=55.40 Aligned_cols=66 Identities=21% Similarity=0.356 Sum_probs=44.1
Q ss_pred CCccccCcccccccCcccCCCCc-ceeeccc--ccceEEccCCCCHHHHHHHHHhCcccccccccchhh
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAPE-VFKIEED--FGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap~-~F~~e~d--~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l 218 (272)
.+.+.+|...|++|+.|..+||. .+.++.+ .|........+....+..+++.||++||.+...-++
T Consensus 30 rG~~~~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~~ 98 (181)
T PRK08222 30 RGKPDLMPSQCIACGACTCACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFEL 98 (181)
T ss_pred cCceEeChhhCcchhHHHHhCCccceEcccccccCccceeeccCcCcCCCCcccccCcCeEEeccceee
Confidence 45577899999999999999984 3444432 121111112344455679999999999998765433
No 100
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=95.93 E-value=0.003 Score=51.17 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=39.4
Q ss_pred ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.+|...|++|+.|..+||.. +...+ +....+. .+....+..+++.||++||.+...
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~--~~~~~i~-~~~C~~Cg~Cv~vCP~~a~~l~~~ 111 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILSRD--KKLKGVD-YSHCKGCGVCVEVCPTNPKSLLMF 111 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEecC--CceEEeC-cCcCcChhHHHHHCCcCceEEEec
Confidence 4557889999999999999944 33333 3332232 233455678999999999765443
No 101
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=95.90 E-value=0.0037 Score=56.89 Aligned_cols=61 Identities=23% Similarity=0.532 Sum_probs=40.0
Q ss_pred CCccccCcccccccCcccCCCCcc-eeec--ccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAPEV-FKIE--EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap~~-F~~e--~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
...+.+|...|++|+.|..+||.. -.++ .+ +...+.........+..++..||++||.+..
T Consensus 40 ~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~-~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g 103 (295)
T TIGR02494 40 SPELLFKENRCLGCGKCVEVCPAGTARLSELAD-GRNRIIIRREKCTHCGKCTEACPSGALSIVG 103 (295)
T ss_pred CceEEEccccCCCCchhhhhCcccccccccccC-CCcceeechhhcCchhHhhccCcHhHHhhhc
Confidence 456788999999999999999843 1111 11 1111111223345677999999999999854
No 102
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=95.77 E-value=0.011 Score=57.24 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCCch---H----HHHHHHHHHHHHHH
Q 024095 80 PDATPEQIKKAYYNCMKACHPDLSGDDP---E----TTNFCMFINEVYAV 122 (272)
Q Consensus 80 ~~a~~~~Ik~ayr~l~~~~HPD~~~~~~---~----~~~~f~~i~~Ay~v 122 (272)
.=.+.++||++||+..+..||||.+..+ + +++.|-.+++||..
T Consensus 398 DLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~ 447 (453)
T KOG0431|consen 398 DLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK 447 (453)
T ss_pred hccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 3468999999999999999999987743 2 34444555555554
No 103
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=95.77 E-value=0.004 Score=52.90 Aligned_cols=67 Identities=25% Similarity=0.483 Sum_probs=44.4
Q ss_pred CCccccCcccccccCcccCCCCc-ceeecccc--cceEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAPE-VFKIEEDF--GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap~-~F~~e~d~--g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
...+.+|...|++|+.|..+||. .+.++.+. |........+....+..+++.||++||.+...-++.
T Consensus 30 rg~p~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~~~~~~~i~~~~C~~Cg~C~~vCP~~AI~~~~~~~~~ 99 (180)
T PRK12387 30 RGKPEYNPQQCIGCAACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEFELA 99 (180)
T ss_pred CCceEEChhhCcChhHHHHhcCccCeEeeccccCCcccceeccccCcCccchhhhcCcCceEccCccchh
Confidence 34567889999999999999984 45555432 211111113334456789999999999987654443
No 104
>PRK09898 hypothetical protein; Provisional
Probab=95.76 E-value=0.0058 Score=53.14 Aligned_cols=59 Identities=17% Similarity=0.456 Sum_probs=42.2
Q ss_pred ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
.+.+|...|++|+.|...||.. ..++.+.+ ..+....+..+++.||++||.+++.++++
T Consensus 148 ~v~vd~~~CigC~~C~~aCP~~ai~~~~~~~------~~~kC~~Cg~Cv~~CP~~Ai~~~~~~~~~ 207 (208)
T PRK09898 148 CITVDHKRCIGCSACTTACPWMMATVNTESK------KSSKCVLCGECANACPTGALKIIEWKDIT 207 (208)
T ss_pred eEEeccccCCCcCcccccCCCCCCEecCCCC------cCCcCcChHHHHHhCCcccEEEecHHHcc
Confidence 4567888999999999999943 33433211 12234456799999999999998877653
No 105
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=95.73 E-value=0.012 Score=52.97 Aligned_cols=95 Identities=17% Similarity=0.313 Sum_probs=64.9
Q ss_pred cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhhhcee
Q 024095 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVA 234 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~~~v~ 234 (272)
+.+ ...|++|+.|...|| .+|.+++ |...+.. ......+.+++..||.+||.+...++- ..
T Consensus 165 I~i-~~~C~~C~~C~~~CP~~vi~~~~--~~~~v~~-~~~C~~C~~Ci~~CP~~AI~i~~~~~~--------------~i 226 (263)
T PRK00783 165 IEV-SEDCDECEKCVEACPRGVLELKE--GKLVVTD-LLNCSLCKLCERACPGKAIRVSDDENK--------------FI 226 (263)
T ss_pred ccc-cccCCchHHHHHhCCccccEecC--CeEEEeC-hhhCCCchHHHHhCCCCceEEEEcCCe--------------EE
Confidence 444 677999999999999 5788876 4444442 223345678999999999998765321 11
Q ss_pred eecCCCCCC-cchhHHHHHHHHHhHHHHHHHHhhh
Q 024095 235 MMLSGMGSG-SADVFRMASSRWERRQAKVLVCYVH 268 (272)
Q Consensus 235 ~~~~g~g~~-~~~~f~~~~~~~~~~~~~~~~~~~~ 268 (272)
+.+-.-|.= ..+.|..|...++.+-.++++....
T Consensus 227 f~vEs~G~l~p~~iv~~A~~~l~~k~~~~~~~~~~ 261 (263)
T PRK00783 227 FTVESDGSLPVEEILLEALKILKRKADELIEALEE 261 (263)
T ss_pred EEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223344543 4889988888888888777766543
No 106
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=95.71 E-value=0.026 Score=52.01 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=38.1
Q ss_pred ccccCcccccccCcccCCCCcceee---cccc---cc---eEEcc-CCCCHHHHHHHHHhCccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEVFKI---EEDF---GR---ARVYN-QCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~F~~---e~d~---g~---a~v~~-q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
...+|...|++|+.|..+||..... .... +. ..++. ....+..+..+++.||++||.++.
T Consensus 241 ~p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~ 310 (312)
T PRK14028 241 KPVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVR 310 (312)
T ss_pred ceEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEecc
Confidence 4566889999999999999954211 1100 11 11111 123345577899999999998764
No 107
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=95.69 E-value=0.01 Score=42.02 Aligned_cols=56 Identities=18% Similarity=0.441 Sum_probs=44.4
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
.++.+...|..-++|+.-.|.+|.+.. +.=..+...+.+.++..+++||.+||...
T Consensus 17 di~fn~~iC~Hs~nCV~Gn~~vF~~~r---kPWI~Pd~~~ve~i~~vi~sCPSGAl~Y~ 72 (74)
T COG3592 17 DIYFNTAICAHSGNCVRGNPKVFNLGR---KPWIMPDAVDVEEIVKVIDTCPSGALKYR 72 (74)
T ss_pred EEEeccceeecccceecCCHhhcccCC---CCccCCCCCCHHHHHHHHHhCCchhhhee
Confidence 345566779999999999999998753 22334457789999999999999999864
No 108
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=95.64 E-value=0.0024 Score=49.59 Aligned_cols=56 Identities=20% Similarity=0.422 Sum_probs=39.2
Q ss_pred cccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+|...|++|+.|..+||. .+.++++ +.. +++ .+....+..+++.||.+||.++.
T Consensus 46 p~~d~~~Ci~C~~C~~~CP~~ai~~~~~-~~~-~id-~~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09624 46 PEFNRDKCVRCYLCYIYCPEPAIYLDEE-GYP-VFD-YDYCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred EEEChhHCcChhhHHhhCCHhhEEecCC-CcE-EEC-chhCCCcCchhhhcCcCcEEEec
Confidence 35688899999999999994 4555543 322 232 22333456899999999998764
No 109
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=95.62 E-value=0.0057 Score=52.59 Aligned_cols=60 Identities=25% Similarity=0.561 Sum_probs=41.8
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
....+|...|++|+.|...|| +.+.+.++ +...+. ......+..++..||++||.+++..
T Consensus 107 ~~~~id~~~Ci~Cg~Cv~aCp~~ai~~~~~-~~~~v~--~~~C~~Cg~Cv~vCP~~AI~~~~~~ 167 (191)
T PRK05113 107 KVAFIDEDNCIGCTKCIQACPVDAIVGATK-AMHTVI--SDLCTGCDLCVAPCPTDCIEMIPVA 167 (191)
T ss_pred ceeEEeCCcCCCCChhhhhCCHhhhecccC-Cceeec--CCcCCchHHHHHHcCcCceEEeecc
Confidence 346778999999999999998 33333322 322222 2334457799999999999987654
No 110
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.58 E-value=0.005 Score=59.04 Aligned_cols=61 Identities=23% Similarity=0.390 Sum_probs=41.8
Q ss_pred CccccCcccccccCcccCCCCc----ceeecccccc-eEEccCCCCHHHHHHHHHhCcc-cccccccch
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPE----VFKIEEDFGR-ARVYNQCGINEFVQQAIESCPV-DCIHRTSAQ 216 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~----~F~~e~d~g~-a~v~~q~g~~e~i~~Av~~CP~-~aI~~~~~~ 216 (272)
....+|+..|++|+.|...||. .+.++++ |. ...+. ...+..+..++..||+ +||++....
T Consensus 335 ~~~~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~-~~~~~~i~-~~~C~~Cg~C~~~CP~~~Ai~~~~~~ 401 (420)
T PRK08318 335 VYARIDQDKCIGCGRCYIACEDTSHQAIEWDED-GTRTPEVI-EEECVGCNLCAHVCPVEGCITMGEVK 401 (420)
T ss_pred eEEEECHHHCCCCCcccccCCCcchhheeeccC-CCceEEec-hhhCcccchHHhhCCCCCCEEEeccC
Confidence 3456788999999999999995 4555432 22 22222 2334456789999999 999887653
No 111
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=95.58 E-value=0.0083 Score=53.83 Aligned_cols=54 Identities=26% Similarity=0.499 Sum_probs=36.8
Q ss_pred CcccccccCcccCCCCcc--eeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024095 159 DEFSCIGCKNCNNVAPEV--FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~--F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
|+..|++|+.|..+||.. .......+....+ ..++...+.++++.||++||.+.
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~~~~~~~~~~~i-~~~~C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLRMPLKKGGSTLV-LSGDCTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred ccccCeEcCCccCcCCCCceeeccccCCCceEe-ccccccchhHHHHhCCccccccc
Confidence 488899999999999953 2222111122122 24556778899999999999874
No 112
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=95.47 E-value=0.0036 Score=48.15 Aligned_cols=58 Identities=17% Similarity=0.457 Sum_probs=38.6
Q ss_pred cCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 158 VDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
++...|++|+.|..++|. .+.++.+ |...+....+.......++..||+++|+-....
T Consensus 31 ~~~~~C~~C~~C~~~CP~~~i~~~~~-g~~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~~~ 89 (101)
T TIGR00402 31 LFSAVCTRCGECASACENNILQLGQQ-GQPTVEFDNAECDFCGKCAEACPTNAFHPRFPG 89 (101)
T ss_pred cCcCcCcChhHHHHHcCcccceeccC-CceeeEecCccCcCccChhhHCCccccCcCCCC
Confidence 455679999999999994 3445432 333222223344456789999999999865443
No 113
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=95.45 E-value=0.0035 Score=49.60 Aligned_cols=59 Identities=29% Similarity=0.509 Sum_probs=38.3
Q ss_pred ccccccCcccCCCC-cceeecccc---cce---EEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024095 161 FSCIGCKNCNNVAP-EVFKIEEDF---GRA---RVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 161 ~~CigC~~C~~~ap-~~F~~e~d~---g~a---~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
..|++|+.|..+|| ..+.+.... +.. ......+....+..+++.||++||.+....+..
T Consensus 43 ~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~Cv~~CP~~al~~~~~~~~~ 108 (122)
T TIGR01971 43 EKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINFGRCIFCGLCEEACPTDAIVLTPEFELA 108 (122)
T ss_pred CcCcCcchhhhhcCHhHeeeeeeccCCCceecccceECcccCCCCCchhhhCCCccccccceeeec
Confidence 78999999999999 555554211 111 011112333456789999999999987665443
No 114
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=95.45 E-value=0.0069 Score=50.64 Aligned_cols=55 Identities=35% Similarity=0.559 Sum_probs=35.7
Q ss_pred cccccCcccCCCCcc-eeecccc---cceE---EccCCCCHHHHHHHHHhCcccccccccch
Q 024095 162 SCIGCKNCNNVAPEV-FKIEEDF---GRAR---VYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 162 ~CigC~~C~~~ap~~-F~~e~d~---g~a~---v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
.|++|+.|..+||.. +.++... |... .....+....+..++..||++||.+....
T Consensus 59 ~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 120 (164)
T PRK05888 59 RCIACKLCAAICPADAITIEAAEREDGRRRTTRYDINFGRCIFCGFCEEACPTDAIVETPDF 120 (164)
T ss_pred cCCcccChHHHcCccccccccccCCCCcccceeeecCCCcCcccCcchhhcCcCcceecCcc
Confidence 899999999999943 4443211 2211 11123334456789999999999987554
No 115
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=95.39 E-value=0.009 Score=54.08 Aligned_cols=58 Identities=22% Similarity=0.328 Sum_probs=38.4
Q ss_pred cCcccccccCcccCCCCcceeecc-cccce-EEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 158 VDEFSCIGCKNCNNVAPEVFKIEE-DFGRA-RVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~~F~~e~-d~g~a-~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
+|...|++|+.|..+||..-.+++ ..+.. ......++...+.++++.||++||.+..+
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~r 264 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLRPPLKGKQSPSQVTSGDCITCGRCIDVCSEDVFNFTIR 264 (271)
T ss_pred CCcccCcccCCcCCcCCCcceecccccCCCccceeCcccCcChhHHHhhcCccceeeccc
Confidence 788899999999999995422220 00111 10012345667889999999999997643
No 116
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=95.24 E-value=0.0058 Score=44.36 Aligned_cols=57 Identities=28% Similarity=0.426 Sum_probs=38.2
Q ss_pred cccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
+.++...|++|+.|..++|.. +.++++ +.. .+. .+.......+++.||++||.+...
T Consensus 20 ~~i~~~~C~~C~~C~~~Cp~~ai~~~~~-~~~-~i~-~~~C~~C~~C~~~CP~~Ai~~~~~ 77 (78)
T TIGR02179 20 PVVDKEKCIKCKNCWLYCPEGAIQEDEG-GFV-GID-YDYCKGCGICANVCPVKAIEMVRE 77 (78)
T ss_pred EEEcCCcCcChhHHHhhcCccceEecCC-CcE-Eec-CccCcCccchhhhCCccccEeccC
Confidence 466788899999999999944 444332 322 222 222334568999999999987543
No 117
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=95.16 E-value=0.0077 Score=50.62 Aligned_cols=66 Identities=24% Similarity=0.500 Sum_probs=41.7
Q ss_pred CccccCcccccccCcccCCCCcc-eeecccc----cceE---EccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDF----GRAR---VYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~~-F~~e~d~----g~a~---v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
..+.++...|++|+.|..+||.. ..++.++ +... .....+....+..+++.||++||.+....++.
T Consensus 52 g~i~~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~C~~~CP~~AI~~~~~~~~~ 125 (167)
T CHL00014 52 GRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELS 125 (167)
T ss_pred CeEEeccccCCCcCcHHHhCCCCCccccccccccccccccccccCCCCcCcCccchHhhcCcCceecCCccccc
Confidence 34556788899999999999954 2221111 1111 11112445567789999999999987665444
No 118
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=95.05 E-value=0.0088 Score=53.39 Aligned_cols=63 Identities=21% Similarity=0.371 Sum_probs=41.2
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCC-CCHHHHH-----HHHHhCcccccccccchhhh
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQC-GINEFVQ-----QAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~-g~~e~i~-----~Av~~CP~~aI~~~~~~~l~ 219 (272)
..+.+|...|+||+.|...|| +...++++.+. .... .-.+.+. .++.+||++||.+.+..+..
T Consensus 123 G~v~id~~~CigC~~Cv~aCP~~Ai~~~~~~~~---~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~~~~~~ 192 (244)
T PRK14993 123 GIVVVDNKRCVGCAYCVQACPYDARFINHETQT---ADKCTFCVHRLEAGLLPACVESCVGGARIIGDIKDPH 192 (244)
T ss_pred CCEEEcHHHCCCHHHHHHhcCCCCCEEeCCCCC---cccCcCCcchhhCCCCcccchhcccCCEEEcccccch
Confidence 346788999999999999999 44555543221 1121 1011222 68999999999988776543
No 119
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=95.00 E-value=0.012 Score=51.83 Aligned_cols=65 Identities=23% Similarity=0.380 Sum_probs=38.8
Q ss_pred ccccCcccccccCcccCCCCcce-eecccccceEEccCCCCHHH----HHHHHHhCcccccccccchhhh
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEVF-KIEEDFGRARVYNQCGINEF----VQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~F-~~e~d~g~a~v~~q~g~~e~----i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
.+.+|...|++|+.|...||..- .++...+....-.--++... .=.++++||++||.+.+.+++.
T Consensus 119 ~v~id~~~C~~C~~C~~aCP~~A~~~~~~~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~~~~ 188 (225)
T TIGR03149 119 IVDVHKDLCVGCQYCIAACPYRVRFIHPVTKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLNDPN 188 (225)
T ss_pred eEEechhhCCcchHHHHhCCCCCcEecCCCCccccCCCCCcchhhCCCCCcccccCccCCEEEecccccH
Confidence 45578889999999999999432 22322121111111221000 1169999999999998776533
No 120
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.67 E-value=0.0085 Score=33.19 Aligned_cols=20 Identities=35% Similarity=0.863 Sum_probs=16.9
Q ss_pred ccccCcccccccCcccCCCC
Q 024095 155 HVFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap 174 (272)
.+++|...|+||+.|...||
T Consensus 2 ~~~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 2 GMVIDLERCIGCGACEVACP 21 (22)
T ss_pred ceEEccccccCchhHHHhhC
Confidence 46789999999999987765
No 121
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=94.61 E-value=0.02 Score=47.63 Aligned_cols=62 Identities=24% Similarity=0.495 Sum_probs=36.9
Q ss_pred ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchhh
Q 024095 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~l 218 (272)
.+.++...|++|+.|...+|. .+.++.+.+.+..- .+-.+.+. .++..||++||.+.+.+++
T Consensus 89 ~~~i~~~~C~~C~~C~~aCP~~ai~~~~~~~~~~kC--~~C~~r~~~g~~p~Cv~~Cp~~Ai~~~~~~~~ 156 (161)
T TIGR02951 89 LVLVDQDKCIGCRYCVWACPYGAPQYDPQQGVMGKC--DGCYDRVEKGLRPACVDACPMRALDFGPIDEL 156 (161)
T ss_pred cEEECHHhCCCchHHHhhCCCCCcEEcCCCCccccC--CCCHHHHHCCCCCcchhhccccceEEecHHHH
Confidence 345677778888888888883 45555432321111 11112222 5888888888888776654
No 122
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=94.46 E-value=0.018 Score=43.05 Aligned_cols=59 Identities=24% Similarity=0.447 Sum_probs=38.0
Q ss_pred ccCcccccccCcccCCCCcc-eeecccc--cceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 157 FVDEFSCIGCKNCNNVAPEV-FKIEEDF--GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~~-F~~e~d~--g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
.++...|++||.|..+||.. ..+..+. .....+ ..........++..||++||.+....
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~-~~~~C~~C~~C~~~Cp~~a~~~~~~~ 86 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIELIEEGLLLPEVVI-DPDLCVLCGACLKVCPVDALSIAEEL 86 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhcccccCccceEEE-ccccCccccchHhhCCcCCeehhhcc
Confidence 56777899999999999954 3333221 011111 12334456688899999998876543
No 123
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=94.42 E-value=0.021 Score=47.93 Aligned_cols=57 Identities=25% Similarity=0.475 Sum_probs=39.1
Q ss_pred CccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
....+|...|++|+.|...||. .+.++++ +. ..+. ......+..+++.||++||.++
T Consensus 106 ~~~~id~~~Ci~Cg~C~~aCp~~ai~~~~~-~~-~~i~-~~~C~~Cg~Cv~~CP~~AI~~~ 163 (165)
T TIGR01944 106 MVALIDEDNCIGCTKCIQACPVDAIVGAAK-AM-HTVI-ADECTGCDLCVEPCPTDCIEMI 163 (165)
T ss_pred ceEEEECCcCCChhHHHHhCCccceEecCC-Cc-eEee-cccccChhHHHHhcCcCceEee
Confidence 3467889999999999999983 3333332 22 2222 2233456799999999999875
No 124
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=94.41 E-value=0.011 Score=55.08 Aligned_cols=66 Identities=24% Similarity=0.452 Sum_probs=39.7
Q ss_pred CccccCcccccccCcccCCCCcc-eeeccc--ccceEEccCCCC--HHHHH-----HHHHhCcccccccccchhhh
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEED--FGRARVYNQCGI--NEFVQ-----QAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~~-F~~e~d--~g~a~v~~q~g~--~e~i~-----~Av~~CP~~aI~~~~~~~l~ 219 (272)
..+.+|...|++|+.|...||.. ..++.+ .+....-...++ .+.+. .++..||++||.+.+..++-
T Consensus 136 g~V~id~dkCigCg~Cv~aCP~gai~~~~~~~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el~ 211 (328)
T PRK10882 136 GIVHYDKDVCTGCRYCMVACPFNVPKYDYNNPFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREELL 211 (328)
T ss_pred CcccCCHHHcCcccHHHHhCCccceeccccccccceeecccccccchhhhhcCCCChhhhhccccceEeccHHHHH
Confidence 44567889999999999999933 223221 121111111111 01111 39999999999988876543
No 125
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=94.41 E-value=0.012 Score=49.82 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=41.9
Q ss_pred ccccCcccccccCcccCCCCcc-eeeccccc--ce---E-EccCCC---CHHHHH------HHHHhCcccccccccchhh
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFG--RA---R-VYNQCG---INEFVQ------QAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~-F~~e~d~g--~a---~-v~~q~g---~~e~i~------~Av~~CP~~aI~~~~~~~l 218 (272)
.+.+|+..|++|+.|...||.. ..+..+.. .. . ...... -.+... .++..||++||.+++..++
T Consensus 81 ~v~i~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~~~~ 160 (181)
T PRK10330 81 FVHVMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL 160 (181)
T ss_pred eEEeChhhCCCcchhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCHHHH
Confidence 3567888999999999999833 33332100 00 0 000000 011222 6899999999999998877
Q ss_pred hhHHH
Q 024095 219 SLLED 223 (272)
Q Consensus 219 ~~le~ 223 (272)
..++.
T Consensus 161 ~~~~~ 165 (181)
T PRK10330 161 EQLSA 165 (181)
T ss_pred HHHHH
Confidence 66553
No 126
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=94.30 E-value=0.014 Score=55.27 Aligned_cols=58 Identities=24% Similarity=0.345 Sum_probs=37.8
Q ss_pred cccCcccccccCcccCCCCcceee---c--ccccceEEc------cCCCCHHHHHHHHHhCcccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEVFKI---E--EDFGRARVY------NQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~F~~---e--~d~g~a~v~------~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
+.+|...|++|+.|..+||..... . ++.+...+. .....+..+..++..||++||.+.
T Consensus 2 i~id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~ 70 (374)
T TIGR02512 2 IVRDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEK 70 (374)
T ss_pred EEechhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhh
Confidence 457888999999999999955322 1 111122111 112334456789999999999876
No 127
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=94.15 E-value=0.024 Score=54.36 Aligned_cols=54 Identities=19% Similarity=0.465 Sum_probs=38.1
Q ss_pred ccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
.+.+|...|++|+.|...||.. +..++ . ..++. ...+..+..++..||++||..
T Consensus 4 ~~~id~~~Ci~C~~C~~~CP~~ai~~~~--~-~~~i~-~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 4 QHLIDPEICIRCNTCEETCPIDAITHDD--R-NYVVK-ADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred eeeeCcccCcCccchhhhCCcccEeccC--C-ceEeC-cccCcCHHHHHhhcCccccee
Confidence 3567888999999999999943 33332 2 22232 334456789999999999984
No 128
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=94.14 E-value=0.013 Score=39.15 Aligned_cols=49 Identities=27% Similarity=0.534 Sum_probs=18.0
Q ss_pred cccCcccccccCcccCCCCc-c-eeecccccceEEccCCCCHHHHHHHHHhCc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE-V-FKIEEDFGRARVYNQCGINEFVQQAIESCP 206 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~-~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP 206 (272)
+.+|...|++|+.|..++|. . ..+... +....+ ...+.......+..||
T Consensus 2 i~id~~~C~~C~~C~~~CP~~~~~~~~~~-~~~~~~-~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPADNAIAIDDG-EKKVEI-DPERCIGCGACVEVCP 52 (52)
T ss_dssp ----TT------TTGGG-TT-----EEE--SSSEEE--TTT--TTSHHHHH-T
T ss_pred CccCcccCcCCcChHHHccchhHHHhhcc-CCCeEe-CcccccccChhhhhCc
Confidence 56788999999999999998 1 112211 222222 2333444557777777
No 129
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=94.13 E-value=0.012 Score=52.11 Aligned_cols=56 Identities=23% Similarity=0.466 Sum_probs=40.0
Q ss_pred cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
+.+|...|++|+.|..+|| ..+.+++ +.. .+. ......+..+++.||++||.....
T Consensus 143 ~~id~~~C~~C~~C~~~CP~~ai~~~~--~~~-~i~-~~~C~~Cg~C~~~CP~~AI~~~~~ 199 (234)
T TIGR02700 143 YMIDRKRCKGCGICVDACPRSAIDMVD--GKA-FIR-LLKCVGCGKCKEACPYNAIHGGLE 199 (234)
T ss_pred eEEChhHCcCcchHHHhCCcccEEecC--Cce-EEc-hhhCCccchHHhhCCCCceecCCc
Confidence 4678889999999999999 4565554 332 221 223345678999999999997643
No 130
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=93.91 E-value=0.075 Score=53.39 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=40.9
Q ss_pred ccccCcccccccCcccCCCCc-----ceeecccccceEEccCCC---CHHHHHHHHHhCccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPE-----VFKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~-----~F~~e~d~g~a~v~~q~g---~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+..|...||-|+.|+.+|-+ .+.+...-...++....+ +.+.+-++++.|||+||.-.+
T Consensus 136 ~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~vCP~GAl~~k~ 203 (603)
T TIGR01973 136 LIKTEMTRCIHCTRCVRFANEVAGVEDLGVIGRGNNVEIGTYEGKTLESELSGNLIDICPVGALTSKP 203 (603)
T ss_pred CeEecCCcCccccHHHHHHHHhhCCceEEEeccCCCCEEecCCCCCCCCcccCChHhhCCcccccccc
Confidence 467799999999999988854 344444423344433222 335677999999999987543
No 131
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=93.82 E-value=0.015 Score=60.22 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=39.5
Q ss_pred CccccCcccccccCcccCCCCccee-----ecccccceE-----------------------EccC---CCCHHHHHHHH
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPEVFK-----IEEDFGRAR-----------------------VYNQ---CGINEFVQQAI 202 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~~F~-----~e~d~g~a~-----------------------v~~q---~g~~e~i~~Av 202 (272)
..+..|...||.|+.|+.+|+++-. +...-..+. +... ..++..+-+++
T Consensus 134 ~~I~~D~~rCI~C~RCVr~C~ev~g~~al~~~~RG~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~Cv 213 (819)
T PRK08493 134 GKINYDPSLCIVCERCVTVCKDKIGESALKTVPRGLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGECI 213 (819)
T ss_pred CcEEechhhcccccHHHhhCcccccchhhhhccCCcccccccccccccccchhhhhhcccceecccCCCcccccccCcHH
Confidence 3477899999999999999987422 111101110 1011 22344566999
Q ss_pred HhCcccccccccc
Q 024095 203 ESCPVDCIHRTSA 215 (272)
Q Consensus 203 ~~CP~~aI~~~~~ 215 (272)
+.|||+||...+.
T Consensus 214 ~VCPvGAL~~k~~ 226 (819)
T PRK08493 214 AVCPVGALSSSDF 226 (819)
T ss_pred HhCCCCccccCcc
Confidence 9999999987643
No 132
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=93.75 E-value=0.048 Score=55.32 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhCCC------CCCCchHHHHHHHHHHHHHHHhcCccccchhcccc-ccccccCCCCCCCCCCCCcc
Q 024095 84 PEQIKKAYYNCMKACHPD------LSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH-GYSLIATNPFLDDSCPKDHV 156 (272)
Q Consensus 84 ~~~Ik~ayr~l~~~~HPD------~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~-~~~~~~~~~~~~~~~~~~~v 156 (272)
.+++++---.+.+..||= .|.++ =.|.++-..|+=..+|--|+.-. .+.....+|| .
T Consensus 81 vk~~r~~~md~~l~nH~LyC~vCd~nnGd-------Celh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pf---------y 144 (978)
T COG3383 81 VKEARREAMDRILSNHPLYCTVCDNNNGD-------CELHNMVMALGLTEQRYPYEEKNPPYPKDESNPF---------Y 144 (978)
T ss_pred HHHHHHHHHHHHHhcCCcCccccCCCCCC-------chHHHHHHHhCCCccccCccccCCCCCcccCCCe---------E
Confidence 345555555667778983 23222 13444444555455555555421 1111122233 3
Q ss_pred ccCcccccccCcccCCCCcc---eee--cccccceEEccCC------CCHHHHHHHHHhCcccccc
Q 024095 157 FVDEFSCIGCKNCNNVAPEV---FKI--EEDFGRARVYNQC------GINEFVQQAIESCPVDCIH 211 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~~---F~~--e~d~g~a~v~~q~------g~~e~i~~Av~~CP~~aI~ 211 (272)
..|...||-||.|+..|-++ +.+ +.+--..+|+-.. .++..+-.++..||++|+-
T Consensus 145 ~ydp~qCIlCgRCVeaCqevqv~eaL~i~w~~~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 145 IYDPNQCILCGRCVEACQEVQVNEALTIDWRGEDPRVIWDNDVPINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred EecchheeehhHHHHHHHhhhceeEEEeecccCCcceecCCCCccccccccccCccceecchhhhh
Confidence 45788899999999998644 433 3222344555432 2345667899999999965
No 133
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=93.74 E-value=0.071 Score=48.64 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=44.5
Q ss_pred ccccCcccccccCcccCCCCcc-----eeecccccceEEccCCCCH----HHHHHHHHhCcccccccccchhhhhHHHHH
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQCGIN----EFVQQAIESCPVDCIHRTSAQQLSLLEDEM 225 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~-----F~~e~d~g~a~v~~q~g~~----e~i~~Av~~CP~~aI~~~~~~~l~~le~~~ 225 (272)
.+.+|..+||-|+.|+.+|.++ +.+...-....+....+.. ....++++.|||+||...+..+-+++...+
T Consensus 206 ~i~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~RG~~t~I~t~~d~~~~~~~~~g~cvdvCPvGAL~~~d~~~~~~~~~~~ 285 (297)
T PTZ00305 206 QTRVVLNRCIHCTRCVRFLNEHAQDFNLGMIGRGGLSEISTFLDELEVKTDNNMPVSQLCPVGKLYLGDADENNAIAREL 285 (297)
T ss_pred ceeecCCcCcCccHHHHHHHHhhCCcEEEEeecCCCCEEeecCCCcccccCCCCceeeECCCcccccCCcccchHHHHHh
Confidence 3457789999999999998654 3333331223333322211 123458999999999988887666554443
No 134
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=93.74 E-value=0.07 Score=47.90 Aligned_cols=87 Identities=17% Similarity=0.315 Sum_probs=57.5
Q ss_pred ccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhhhceeeecCC
Q 024095 161 FSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSG 239 (272)
Q Consensus 161 ~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~~~v~~~~~g 239 (272)
..|++|+.|...|| .+|.+++ +...+.+ .+.+..+.+++..||.+||.+...++- ..+.+-+
T Consensus 169 ~~C~~C~~C~~~CP~~vi~~d~--~~~~v~~-~~~C~~C~~C~~~Cp~~AI~~~~~~~~--------------~if~vEs 231 (259)
T cd07030 169 EDCDGCGKCVEECPRGVLELEE--GKVVVED-LEDCSLCKLCERACDAGAIRVGWDEDR--------------FIFEVES 231 (259)
T ss_pred hhCCChHHHHHhCCccceEccC--CeeEEeC-hhhCcCchHHHHhCCCCcEEEEecCCE--------------EEEEEeC
Confidence 56999999999999 6677765 3333332 233445678999999999997654321 1122333
Q ss_pred CCC-CcchhHHHHHHHHHhHHHHHHH
Q 024095 240 MGS-GSADVFRMASSRWERRQAKVLV 264 (272)
Q Consensus 240 ~g~-~~~~~f~~~~~~~~~~~~~~~~ 264 (272)
-|+ ...+.|-.|...++++-.++.+
T Consensus 232 ~Gsl~p~~il~~A~~~l~~k~~~~~~ 257 (259)
T cd07030 232 DGSLPPKEILLEALRILKEKADELIE 257 (259)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 354 3488998887877777655544
No 135
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=93.73 E-value=0.01 Score=33.61 Aligned_cols=20 Identities=50% Similarity=1.095 Sum_probs=17.4
Q ss_pred cccCcccccccCcccCCCCc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~ 175 (272)
+.+|+..|+||+.|..++|.
T Consensus 2 ~~id~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 2 VVIDPDKCIGCGDCVRVCPE 21 (24)
T ss_pred cEEChhhCcChhHHHHhcch
Confidence 46789999999999999984
No 136
>PRK08764 ferredoxin; Provisional
Probab=93.68 E-value=0.025 Score=45.82 Aligned_cols=53 Identities=25% Similarity=0.518 Sum_probs=34.0
Q ss_pred ccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024095 157 FVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
++++..|++|+.|..++|. .+.++++ +... +. .........++..||++||.+
T Consensus 81 ~~~~~~Ci~C~~Cv~aCp~~ai~~~~~-~~~~-v~-~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 81 WIVEADCIGCTKCIQACPVDAIVGGAK-HMHT-VI-APLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred EECcccCcCcchHHHhCChhhcCccCC-Ccee-ec-CCcCcCccchhhhcCccceEe
Confidence 3455789999999999983 2333222 2222 21 223344568999999999975
No 137
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=93.51 E-value=0.068 Score=51.65 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=33.2
Q ss_pred cccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 160 EFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 160 e~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
+..|++|+.|..+||....+++ +. ..++..+..+++.||. ++.....
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~~~~--~~------~~~Ci~Cg~CidaCp~-a~~~~g~ 276 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGIDIRD--GL------QLECINCGLCIDACDD-VMEKMGK 276 (434)
T ss_pred CCCCCChhhhHHhCCCCCEeCC--CC------chhChhhhHHHHhCCC-hHHhcCC
Confidence 5679999999999997644433 21 2356678899999997 5544333
No 138
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.47 E-value=0.022 Score=57.75 Aligned_cols=67 Identities=25% Similarity=0.491 Sum_probs=42.3
Q ss_pred ccccCcccccccCcccCCCC-cceeeccccc-ceEEccCCCCHHHHH------HHHHhCcccccccccchhhhhH
Q 024095 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFG-RARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g-~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~~~l~~l 221 (272)
.+.+|...|++|+.|...|| ..+.+..... .............+. .++..||++||.+++..++...
T Consensus 79 ~~~id~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~~~~ 153 (654)
T PRK12769 79 SIQVNQQKCIGCKSCVVACPFGTMQIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTEQALSGM 153 (654)
T ss_pred eEEEecccccCcChhcccCCccCeeecccCCcccceeeecCcCcCCCCCCCCCceeccCCcCcEEEecHHHHHHH
Confidence 45678899999999999999 4444443211 000000111223333 6889999999999987665443
No 139
>PRK10194 ferredoxin-type protein; Provisional
Probab=93.42 E-value=0.02 Score=47.77 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=33.9
Q ss_pred CcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024095 159 DEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
+...|++|+.|..++|.. ..+++. |...+.-..+........++.||+++|....
T Consensus 32 ~~~~C~~Cg~C~~aCp~~~i~~~~~-~~~~~~~~~~~C~~C~~C~~~CP~~ai~~~~ 87 (163)
T PRK10194 32 FLTHCTRCDACINACENNILQRGAG-GYPSVNFKNNECSFCYACAQACPESLFSPRH 87 (163)
T ss_pred HhhhCcChhHHHHHcChhhcccCCC-CceeeeecCCCCCCchhhHhhCcchheeccc
Confidence 345799999999999854 333332 3222222223344567888999998887654
No 140
>PRK06273 ferredoxin; Provisional
Probab=93.36 E-value=0.014 Score=49.09 Aligned_cols=56 Identities=25% Similarity=0.376 Sum_probs=35.0
Q ss_pred cccCcccccccCcccCCCCc-ceeecccc------cc----eEEccCCCCHHHHHHHHHhCccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDF------GR----ARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~-~F~~e~d~------g~----a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
..+++..|++|+.|..+||. ...++.+. +. ..+++ ......+..+++.||++||..
T Consensus 44 ~~id~~~CigCg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id-~~kCi~Cg~C~~aCP~~AI~~ 110 (165)
T PRK06273 44 KKVFEELCIGCGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKID-YEKCVYCLYCHDFCPVFALFN 110 (165)
T ss_pred CeECchhCcChhHHHHhcCccceeeecccccchhcccccccceecc-cccCcCCCCcchhCCHhheec
Confidence 35688889999999999994 34444210 00 01111 222334568999999999843
No 141
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=93.35 E-value=0.12 Score=54.15 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=39.5
Q ss_pred ccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+..|...||.|+.|+.+|.++ +.+....++..+-.. .-+.+.+-++++.|||+||.-..
T Consensus 143 ~i~~d~~rCi~C~rCVr~c~e~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~ 210 (847)
T PRK08166 143 FISHEMNRCIACYRCVRYYKDYAGGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEVCPTGVFTDKT 210 (847)
T ss_pred ceEecCCcCccccHHHHHHHhhcCcceEEEeecCceeEecCCCCCcccChhhCChHhhCCchhccccc
Confidence 4667899999999999998644 333332122222211 22345678999999999987554
No 142
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=93.22 E-value=0.045 Score=56.59 Aligned_cols=61 Identities=16% Similarity=0.343 Sum_probs=40.5
Q ss_pred CccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~~-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+..|...||-|+.|+.+|-++ +.+...-...++... .-+.+.+-++++.|||+||.-..
T Consensus 137 p~i~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cg~cv~~CP~GAl~~k~ 205 (776)
T PRK09129 137 PLISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRGEHSEITTYVGKTVDSELSGNMIDLCPVGALTSKP 205 (776)
T ss_pred cceeecccccccCcHHHHHHHHhcCCceeeeeccCCCCEEcCCCCCCccCcccCCchhhCCcccccccc
Confidence 34566899999999999888543 444333233333322 12345678999999999998554
No 143
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=93.21 E-value=0.01 Score=52.35 Aligned_cols=61 Identities=25% Similarity=0.563 Sum_probs=37.8
Q ss_pred CCccccCcccccccCcccCCCCcceeecccccceEEccC--CC---------CHH---HHH--HHHHhCcccccccc
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ--CG---------INE---FVQ--QAIESCPVDCIHRT 213 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q--~g---------~~e---~i~--~Av~~CP~~aI~~~ 213 (272)
...+++|...|+||+.|...|+..+.+.+......++.. .+ ... .+. .++..||++||...
T Consensus 38 ~~~~~iD~~rCigC~~C~~aC~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~ 114 (225)
T TIGR03149 38 RYGMVHDETACIGCTACMDACREVNKVPEGVSRLEIIRSEPYGEFPDVEYRFFRKSCQHCDNAPCVAVCPTGASFKD 114 (225)
T ss_pred eEEEEEEHHHCcCcHHHHHHhhHHhCCCCCCceEEEEEecccCCCCCceeEECchhccCCcCcChHhhCCCCcEEEe
Confidence 345778999999999999999976544432122222111 00 111 122 38899999999864
No 144
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=92.29 E-value=0.18 Score=52.44 Aligned_cols=60 Identities=18% Similarity=0.394 Sum_probs=38.9
Q ss_pred ccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+..|...||-|+.|+.+|-++ +.+...-....+... .-+.+.+-++++.|||+||.-..
T Consensus 144 ~i~~d~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~cG~cv~vCP~GAl~~k~ 211 (797)
T PRK07860 144 QVLLDRERCVLCARCTRFSDQIAGDPFIDLQERGALQQVGIYEGEPFQSYFSGNTVQICPVGALTGAA 211 (797)
T ss_pred ceeecccccccCcHHHHHHHhhcCCcEEEeeecCCCCEEecCCCCCcCccccCCchhhCCcccccccc
Confidence 4667999999999999988653 333333122333322 11224567999999999997443
No 145
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=92.22 E-value=0.024 Score=48.07 Aligned_cols=63 Identities=22% Similarity=0.479 Sum_probs=38.4
Q ss_pred CCCccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 152 PKDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 152 ~~~~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
...-.++|+..||||..|.+.||---.+-....--.|+.. ..--+-.++..|||+||++....
T Consensus 106 ~~~va~i~e~~ciGCtkCiqaCpvdAivg~~~~mhtv~~d--lCTGC~lCva~CPtdci~m~~~~ 168 (198)
T COG2878 106 ARMVALIDEANCIGCTKCIQACPVDAIVGATKAMHTVIAD--LCTGCDLCVAPCPTDCIEMQPVA 168 (198)
T ss_pred cceeeEecchhccccHHHHHhCChhhhhccchhHHHHHHH--HhcCCCcccCCCCCCceeeeecc
Confidence 3445678999999999999999843323211011111111 01113468899999999987554
No 146
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.21 E-value=0.057 Score=54.64 Aligned_cols=66 Identities=29% Similarity=0.555 Sum_probs=42.1
Q ss_pred ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCC-HHHHHHHHHhCcccccccccchhhhhHH
Q 024095 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGI-NEFVQQAIESCPVDCIHRTSAQQLSLLE 222 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~-~e~i~~Av~~CP~~aI~~~~~~~l~~le 222 (272)
.+.+|...|++|+.|...||. .+.+.++ ........++ ......++..||++||.+.+..++....
T Consensus 79 ~v~~d~~~C~gC~~C~~~CP~~ai~~~~~--~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~~~~~~~~~ 146 (639)
T PRK12809 79 SVQLDEQKCIGCKRCAIACPFGVVEMVDT--IAQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQIK 146 (639)
T ss_pred ceecChhhCcchhhHhhhcCCCCEEccCC--CcccccCCcccCCCCChhhhhCccceEEEechHHHHHHH
Confidence 356788899999999999993 4444432 1111111111 0112479999999999998876665443
No 147
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=92.02 E-value=0.13 Score=49.60 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=33.8
Q ss_pred CccccCcccccccC--cccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024095 154 DHVFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 154 ~~v~vDe~~CigC~--~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+......|++|+ .|..+||.. ...+++.|.+. +++ .-+..+..++.+||.+||.+..
T Consensus 174 ~~m~y~p~~C~HC~nP~CV~ACPtGAI~k~eedGiV~-ID~-dkCiGCg~CV~ACPygAI~~n~ 235 (492)
T TIGR01660 174 TFMMYLPRLCEHCLNPACVASCPSGAIYKREEDGIVL-IDQ-DKCRGWRMCISGCPYKKIYFNW 235 (492)
T ss_pred ceEEECCCcCcCCCcccchhhCccCCeEEecCCCeEE-Eeh-hhccChHHHHHhCCCCCcEecC
Confidence 34455667788887 788888743 22233224322 222 2223356788888888887654
No 148
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=91.86 E-value=0.018 Score=38.51 Aligned_cols=48 Identities=23% Similarity=0.591 Sum_probs=21.9
Q ss_pred cccccCcccCCCC-cceeecccc---cceEEccCCCCHHHHHHHHHhCcccc
Q 024095 162 SCIGCKNCNNVAP-EVFKIEEDF---GRARVYNQCGINEFVQQAIESCPVDC 209 (272)
Q Consensus 162 ~CigC~~C~~~ap-~~F~~e~d~---g~a~v~~q~g~~e~i~~Av~~CP~~a 209 (272)
.|++|+.|..++| +.+.+.+.. +...+.............+..||++|
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENEEGKPKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT-SSSTTSEETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccCcccccccCCceEEEEechhCcCcChhhhhCcCcC
Confidence 4899999999998 445554321 11111111222345557889999875
No 149
>PRK07118 ferredoxin; Validated
Probab=91.69 E-value=0.068 Score=48.71 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=41.7
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEcc---CC---------CCHHHHHHHHHhCccccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYN---QC---------GINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~---q~---------g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+.+|...|++|+.|...|| ..+.+.+......+.- .. ........++..||++||.+.+
T Consensus 161 g~~~id~~~C~~Cg~Cv~aCP~~ai~~~~~~~~v~v~c~~~~~g~~~~~~~~~~Ci~Cg~Cv~~CP~~AI~~~~ 234 (280)
T PRK07118 161 GLPVVDEDKCTGCGACVKACPRNVIELIPKSARVFVACNSKDKGKAVKKVCEVGCIGCGKCVKACPAGAITMEN 234 (280)
T ss_pred CeEEEChhhCcChhHHHHhcCccceeeeccccceeeeeeccccccccccccccccccchHHHhhCCcCcEEEeC
Confidence 456788999999999999999 6677775433333221 01 1122456789999999999854
No 150
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=91.46 E-value=0.032 Score=51.47 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=38.6
Q ss_pred ccccCcccccccCcccCCCCc-ceeecccccceEEccCCC---CHHHHHHHHHhCcccccccccchh
Q 024095 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCG---INEFVQQAIESCPVDCIHRTSAQQ 217 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g---~~e~i~~Av~~CP~~aI~~~~~~~ 217 (272)
.+.+|...|++|+.|...||. ...++.+.+.+..-.-.. +....-.++.+||++||.+.+.++
T Consensus 156 iV~ID~ekCiGCg~Cv~ACPygAi~~n~~~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fGdldd 222 (321)
T TIGR03478 156 IVLVDQERCKGYRYCVEACPYKKVYFNPQSQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFVGYLDD 222 (321)
T ss_pred eEEECHHHCcchHHHHHhCCCCCcEecCCCCchhhCCCchhhhccCCCCHHHhhcCcccEEEEeCCC
Confidence 456899999999999999993 334443322221111110 001123799999999999866544
No 151
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=91.11 E-value=0.047 Score=49.01 Aligned_cols=54 Identities=20% Similarity=0.450 Sum_probs=34.1
Q ss_pred ccccccCcccCCCC-cceeeccc-----ccceEEccCCCCHHHHH--HHHHhCccccccccc
Q 024095 161 FSCIGCKNCNNVAP-EVFKIEED-----FGRARVYNQCGINEFVQ--QAIESCPVDCIHRTS 214 (272)
Q Consensus 161 ~~CigC~~C~~~ap-~~F~~e~d-----~g~a~v~~q~g~~e~i~--~Av~~CP~~aI~~~~ 214 (272)
..|++|+.|..+|| ++..+... .|.............+. .++..||++||.+..
T Consensus 59 ~~Ci~Cg~Cv~aCP~~aI~~~~~~~~~~~g~p~~~~~~~~C~~C~~~~Cv~aCPtgAL~~~~ 120 (254)
T PRK09476 59 SACIRCGLCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMCEDIPCVKACPSGALDREL 120 (254)
T ss_pred hhCcCchHHHHhCCccccCccccccccccCCceeeecCCcCcCCCCCchhhccCccceEeec
Confidence 57999999999998 45544321 12222222223344444 599999999998743
No 152
>PRK07118 ferredoxin; Validated
Probab=91.06 E-value=0.13 Score=46.87 Aligned_cols=56 Identities=25% Similarity=0.484 Sum_probs=39.8
Q ss_pred cCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchh
Q 024095 158 VDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQ 217 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~ 217 (272)
++...|++|+.|..+|| +.+.+++ +.+.+- .........+++.||+++|.+.....
T Consensus 210 ~~~~~Ci~Cg~Cv~~CP~~AI~~~~--~~~vId--~~~C~~Cg~C~~~CP~~AI~~~~~~~ 266 (280)
T PRK07118 210 VCEVGCIGCGKCVKACPAGAITMEN--NLAVID--QEKCTSCGKCVEKCPTKAIRILNKPP 266 (280)
T ss_pred ccccccccchHHHhhCCcCcEEEeC--CcEEEc--CCcCCCHHHHHHhCCccccEeecccc
Confidence 34667999999999999 5677765 343332 12223456899999999999876643
No 153
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=90.78 E-value=0.085 Score=48.69 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=38.6
Q ss_pred cccCcccccccCcccCCCCc----ceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE----VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~----~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
..+|...|++|+.|...||. .+.+++ +. .++ ....+..+..++..||++||....
T Consensus 164 ~~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~--~~-~~i-d~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 164 PQYDADRCIGCGACVKVCKKKAVGALSFEN--YK-VVR-DHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred CceeCccCCcchHHHHhcChhhcCceeccC--Ce-EEe-CCCcCcCcchhhhhCCHhhcccCc
Confidence 45788889999999999994 233332 32 222 233455677999999999997654
No 154
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=90.30 E-value=0.13 Score=55.68 Aligned_cols=61 Identities=20% Similarity=0.351 Sum_probs=39.2
Q ss_pred cccCcccccccCcccCCCCcc-eeec---cc--------c-----------cce-EEccCCCCHHHHHHHHHhCccc--c
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV-FKIE---ED--------F-----------GRA-RVYNQCGINEFVQQAIESCPVD--C 209 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~-F~~e---~d--------~-----------g~a-~v~~q~g~~e~i~~Av~~CP~~--a 209 (272)
+..+...|++|+.|..+||.. +.+. ++ + +.. .+.....++..|..|++.||++ |
T Consensus 678 p~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~A 757 (1165)
T TIGR02176 678 PVWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEKA 757 (1165)
T ss_pred ceeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCcc
Confidence 445788899999999999833 2221 00 0 000 0111244566788999999994 9
Q ss_pred cccccch
Q 024095 210 IHRTSAQ 216 (272)
Q Consensus 210 I~~~~~~ 216 (272)
|.++...
T Consensus 758 l~m~~~~ 764 (1165)
T TIGR02176 758 LVMQPLA 764 (1165)
T ss_pred ccccchh
Confidence 9987665
No 155
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=90.02 E-value=0.19 Score=50.49 Aligned_cols=51 Identities=31% Similarity=0.559 Sum_probs=36.6
Q ss_pred CccccCcccccccCcccC--CCCcceeecccccceEEccCCCCHHHHHHHHHhCccccc
Q 024095 154 DHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCI 210 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~--~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI 210 (272)
..+.+|...|++|+.|.. .||. +..++ +.. .++. .+..+-.+++.||++||
T Consensus 543 ~~~~id~~~C~~C~~C~~~~~CP~-~~~~~--~~~-~i~~--~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 543 GPYKVDQDKCIGCKKCIKELGCPA-IEPED--KEA-VIDP--LCTGCGVCAQICPFDAI 595 (595)
T ss_pred ceEEEcCCcCCCccccccccCCCC-ccccC--Ccc-eeCC--CCcCHHHHHhhCccccC
Confidence 456789999999999999 8983 22222 332 2332 45667899999999987
No 156
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=90.01 E-value=0.043 Score=30.91 Aligned_cols=19 Identities=37% Similarity=0.882 Sum_probs=14.7
Q ss_pred ccCcccccccCcccCCCCc
Q 024095 157 FVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~ 175 (272)
.+|...|++|+.|...+|.
T Consensus 2 ~id~~~C~~Cg~C~~~CP~ 20 (24)
T PF00037_consen 2 VIDPDKCIGCGRCVEACPF 20 (24)
T ss_dssp EEETTTSSS-THHHHHSTT
T ss_pred EEchHHCCCcchhhhhccc
Confidence 4677889999999988884
No 157
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=89.84 E-value=0.077 Score=51.23 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=37.3
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRT 213 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~ 213 (272)
..+.+|...|+||+.|...|| ..-.++.+.+.+..-.-.. +.+. .++.+||++|+.+-
T Consensus 207 GiV~ID~dkCiGCg~CV~ACPygAI~~n~~~g~~~KCd~C~--~Rie~G~pPaCVeaCP~~Ar~fG 270 (492)
T TIGR01660 207 GIVLIDQDKCRGWRMCISGCPYKKIYFNWKTGKSEKCIFCY--PRIEAGQPTVCSETCVGRIRYLG 270 (492)
T ss_pred CeEEEehhhccChHHHHHhCCCCCcEecCCCCccccCCCCh--hHHhCCCCCcchhhcChhhhhhh
Confidence 345689999999999999999 3333444334332222121 2221 59999999997664
No 158
>PRK13795 hypothetical protein; Provisional
Probab=89.42 E-value=0.12 Score=52.45 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=37.9
Q ss_pred cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
...+...|++|+.|...|| ..+.++++ .....++ .+.+..+..++..||+.+|..
T Consensus 576 ~v~~~~~C~~Cg~C~~~CP~~ai~~~~~-~~~~~id-~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 576 LLRRAAECVGCGVCVGACPTGAIRIEEG-KRKISVD-EEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EEEccccCCCHhHHHHhCCcccEEeecC-CceEEec-hhhcCChhHHHhhcCCCeeEe
Confidence 3456778999999999999 44555543 2222222 234456789999999999875
No 159
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=88.77 E-value=0.4 Score=45.63 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=37.3
Q ss_pred CccccCcccccccCccc--CCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 154 DHVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~--~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..+.++...|++|+.|. .+||..- +..+ . .++ ...+..+..+++.||.+||.+...
T Consensus 295 ~~p~id~dkCi~Cg~C~~~~aCPt~A-I~~~-~---~Id-~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 295 VRPKYNPERCENCDPCLVEEACPVPA-IKKD-G---TLN-TEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred eeEEEchhhCcCCCCCcCCcCCCHhh-Eecc-c---eeC-hHhCcChHHHHhhCCccceEEeCC
Confidence 34567888899999995 7888432 3222 1 122 223345678999999999998644
No 160
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=88.62 E-value=0.23 Score=49.35 Aligned_cols=56 Identities=18% Similarity=0.398 Sum_probs=35.7
Q ss_pred cCccccccc------CcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 158 VDEFSCIGC------KNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 158 vDe~~CigC------~~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+...|+.| +.|..+||.. +...++ +....++ .+.+..+..++..||++||.++..
T Consensus 501 ~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~-~~~~~i~-~~~C~~Cg~C~~~CP~~Ai~~~~~ 563 (564)
T PRK12771 501 QEAARCLSCGNCFECDNCYGACPQDAIIKLGP-GRRYHFD-YDKCTGCHICADVCPCGAIEMGPG 563 (564)
T ss_pred hhcccCcccccccccchhhhhCChhheeeecC-CceEEEe-cccCcChhHHHhhcCcCceEeccC
Confidence 445556555 8999999854 444332 3222222 334456779999999999998653
No 161
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=88.35 E-value=0.12 Score=52.89 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=38.9
Q ss_pred ccccCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+..|...||.|+.|+.+|-++ +.+...-....+..- .-+.+.+-++++.|||+||.-..
T Consensus 139 ~i~~~~~rCI~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~~~~~~~~~~~G~cv~~CPvgAl~~k~ 206 (687)
T PRK09130 139 LVKTVMTRCIHCTRCVRFATEVAGVPELGAIGRGEDMEITTYLEQALTSELSGNVIDLCPVGALTSKP 206 (687)
T ss_pred cEEEecccCCcccHHHHHHHhhcCCceEEeeecCCCCEEccCCCCCccccccccHHhhCCCccccccc
Confidence 3567889999999999888544 333332122333221 11235678999999999988543
No 162
>PRK10194 ferredoxin-type protein; Provisional
Probab=88.15 E-value=0.22 Score=41.43 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=29.3
Q ss_pred ccccCcccCCCC-cceeecccc-cce-EEccCCCCHHHHHHHHHhCccccccccc
Q 024095 163 CIGCKNCNNVAP-EVFKIEEDF-GRA-RVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 163 CigC~~C~~~ap-~~F~~e~d~-g~a-~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
|++|+.|...+| +.+.++.+. |.. .++. .........+++.||++||.++.
T Consensus 106 ~~~C~~C~~~CP~~Ai~~~~~~~~~~~~~i~-~~~C~gCg~C~~~CP~~AI~~~~ 159 (163)
T PRK10194 106 SVECRRCQDSCEPMAIIFRPTLSGIYQPQLN-SQLCNGCGACAASCPVSAITAEY 159 (163)
T ss_pred CCCcCcchhhCCHhHeEeeecCCCcccceeC-cccCcCcchhhhhCCccceEecc
Confidence 378899988888 334444321 211 1111 11122356788999999988654
No 163
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=87.76 E-value=0.2 Score=44.32 Aligned_cols=53 Identities=23% Similarity=0.461 Sum_probs=37.5
Q ss_pred cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
..+|+..|++|+.|...|| ..+.+++ +... ++ ......+..++..||+++|..
T Consensus 169 ~~id~~~C~~C~~C~~aCP~~ai~~~~--~~~~-i~-~~~C~~C~~C~~~CP~~~~~~ 222 (228)
T TIGR03294 169 KVVNQGLCMGCGTCAAACPTRAIEMED--GRPN-VN-RDRCIKCGACYVQCPRAFWPE 222 (228)
T ss_pred EEEChhhCcChhHHHHhCCHhhEEEeC--CcEE-EC-hhhccCHHHHHHHcCCCCcch
Confidence 4578889999999999999 4466654 3332 22 223345678999999988764
No 164
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=87.73 E-value=0.26 Score=52.39 Aligned_cols=79 Identities=19% Similarity=0.336 Sum_probs=47.1
Q ss_pred Ccccccc----cCcccCCCCcce--eecc-cc-cceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhh
Q 024095 159 DEFSCIG----CKNCNNVAPEVF--KIEE-DF-GRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVER 230 (272)
Q Consensus 159 De~~Cig----C~~C~~~ap~~F--~~e~-d~-g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~ 230 (272)
+...|.+ |+.|..+||..- .++. .+ +....++....+..+..++..||++|+.+... +++++....-...
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~~~~i~~d~~C~~CG~C~~vCP~~a~~~~gk--~~~~~kd~~fy~~ 956 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQFQIVHLDGMCNECGNCATFCPYDGAPYKDK--LTLFWLEEDFYNS 956 (1012)
T ss_pred ccccccCCCCCCCChhhhCChhhhhccccccccCCceeeecCccccccchHHHhCCCCcccceee--eeeecchHHHHhc
Confidence 4478996 999999999652 2321 11 11222222233667789999999999998887 4444422222333
Q ss_pred hceeeecCC
Q 024095 231 VNVAMMLSG 239 (272)
Q Consensus 231 ~~v~~~~~g 239 (272)
.|-++.++|
T Consensus 957 sggGvTlsG 965 (1012)
T TIGR03315 957 TNSGFLVED 965 (1012)
T ss_pred cCCcEEEEC
Confidence 344555554
No 165
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=87.15 E-value=0.21 Score=50.82 Aligned_cols=71 Identities=15% Similarity=0.309 Sum_probs=47.0
Q ss_pred cCcccccccCcccCCCCcc-----eeecccccceEEccC---CCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhh
Q 024095 158 VDEFSCIGCKNCNNVAPEV-----FKIEEDFGRARVYNQ---CGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVE 229 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~~-----F~~e~d~g~a~v~~q---~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~ 229 (272)
.|...||-|..|+.+|-++ +.+-++.+.+.+... .-+.+.+-++|+.|||+||.-... +...=.|.+.+.+
T Consensus 141 ~dm~RCI~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~t~~~~~l~se~cGncv~vCPvGALt~K~~-~~~ar~wEl~k~~ 219 (693)
T COG1034 141 YDMNRCILCTRCVRFCKEIAGTHELGVIKRGENSEIGTYLDQPLESELCGNCVDVCPVGALTSKPF-AFTARKWELKKTP 219 (693)
T ss_pred cccccceechhhHHhhhhhcCccccceeecCCCceeecccccccccccccceeeeccccccccChH-HhhhccchhccCc
Confidence 7889999999999988654 222222233333332 223367789999999999987766 5544446666544
No 166
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=86.70 E-value=0.14 Score=44.77 Aligned_cols=52 Identities=13% Similarity=0.411 Sum_probs=31.6
Q ss_pred ccccccCcccCCCC-cceeeccc-----ccceEEccCCCCHHHHH--HHHHhCccccccc
Q 024095 161 FSCIGCKNCNNVAP-EVFKIEED-----FGRARVYNQCGINEFVQ--QAIESCPVDCIHR 212 (272)
Q Consensus 161 ~~CigC~~C~~~ap-~~F~~e~d-----~g~a~v~~q~g~~e~i~--~Av~~CP~~aI~~ 212 (272)
..|++|+.|..+|| +...+... .|.............+. .+++.||++||..
T Consensus 53 ~~Ci~Cg~Cv~aCP~~ai~~~~~~~~~~~g~p~~~~~~~~C~~C~d~~Cv~~CP~~Ai~~ 112 (213)
T TIGR00397 53 AACVRCGLCVEACPYDILSLASWSDPAPLGTPFFTPREVPCRMCKDIPCARACPTGALDP 112 (213)
T ss_pred ccccchhHHHHhCCcccccccccccccccCCccccccCCcCCCCCCchHHhHcCHhhhch
Confidence 57999999999999 44554321 12211111112223333 5899999999974
No 167
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=86.09 E-value=0.46 Score=24.48 Aligned_cols=15 Identities=47% Similarity=1.158 Sum_probs=12.9
Q ss_pred ccccccCcccCCCCc
Q 024095 161 FSCIGCKNCNNVAPE 175 (272)
Q Consensus 161 ~~CigC~~C~~~ap~ 175 (272)
..|++|+.|..++|.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 359999999999984
No 168
>PF13446 RPT: A repeated domain in UCH-protein
Probab=85.27 E-value=1.6 Score=30.18 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=24.8
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHH
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMK 96 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~ 96 (272)
.+.|++|||+++.+.+.|..+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999887
No 169
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=84.61 E-value=0.98 Score=41.81 Aligned_cols=60 Identities=18% Similarity=0.245 Sum_probs=39.3
Q ss_pred CccccCcccccccC--cccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 154 DHVFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 154 ~~v~vDe~~CigC~--~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..++.....|..|. .|..+||.. +...++.|.+. +++ .....+..++.+||.+||.+...
T Consensus 122 ~~~~y~p~~C~hC~nP~Cv~aCPtgAI~k~eedGiV~-ID~-ekCiGCg~Cv~ACPygAi~~n~~ 184 (321)
T TIGR03478 122 NYYFYLPRICNHCTNPACLAACPTGAIYKREEDGIVL-VDQ-ERCKGYRYCVEACPYKKVYFNPQ 184 (321)
T ss_pred ceEEEecccCCCCCCccchhhCCcCcEEEecCCCeEE-ECH-HHCcchHHHHHhCCCCCcEecCC
Confidence 34456777899999 799999943 33233325433 322 22234678999999999997653
No 170
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=84.05 E-value=0.49 Score=46.27 Aligned_cols=60 Identities=23% Similarity=0.399 Sum_probs=39.3
Q ss_pred cccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHH
Q 024095 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLE 222 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le 222 (272)
..+|+..|+||+.|.. || +...++ ++ +++. -.+.-+-.+..+||.+||.+....+..++.
T Consensus 556 a~vde~~C~gC~~C~~-Cpf~ais~~----ka-~v~~-~~C~gCG~C~~aCp~gai~~~~f~~eqi~a 616 (622)
T COG1148 556 ATVDEDKCTGCGICAE-CPFGAISVD----KA-EVNP-LRCKGCGICSAACPSGAIDLAGFSDEQILA 616 (622)
T ss_pred cccchhhhcCCcceee-CCCCceecc----cc-ccCh-hhhCcccchhhhCCcccchhcccCHHHHHH
Confidence 4679999999999999 88 333333 12 2211 111223478899999999988776555543
No 171
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=83.37 E-value=2.8 Score=36.14 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhc
Q 024095 79 LPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLS 124 (272)
Q Consensus 79 ~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLs 124 (272)
+++|+.|||++|+.++..+|--| ++.-..|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd--------~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGD--------EKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHHH
Confidence 47899999999999999999322 444567999999865
No 172
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=83.07 E-value=0.33 Score=43.96 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=37.2
Q ss_pred CccccCcccccccCcccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
....+|...|+.||.|..+|+-. -...+ |...+++ ..-++-+-.+.-.||.+||..++.
T Consensus 62 ~~p~i~~e~C~~CG~C~~vC~f~Ai~~~~--~~~~~~~-~~lC~GCgaC~~~CP~~AI~~~~~ 121 (284)
T COG1149 62 EIPEIDPEKCIRCGKCAEVCRFGAIVVLP--GGKPVLN-PDLCEGCGACSIVCPEPAIEEEPV 121 (284)
T ss_pred hccccChhhccccCcHHHhCCCCeEEEcC--CCceecC-cccccCcccceeeCCCcccccccc
Confidence 34567888899999999999732 21111 2222221 112344557889999999987655
No 173
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=82.51 E-value=0.28 Score=41.52 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=27.7
Q ss_pred cccccC--cccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 162 SCIGCK--NCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 162 ~CigC~--~C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.|+.|+ .|..++|......+ .|...+ . .........++..||.++|.+...
T Consensus 57 ~C~~C~~~~C~~~Cp~~ai~~~-~~~v~i-~-~~~C~~C~~C~~~CP~~ai~~~~~ 109 (181)
T PRK10330 57 VCRQCEDAPCANVCPNGAISRD-KGFVHV-M-QERCIGCKTCVVACPYGAMEVVVR 109 (181)
T ss_pred cCcCcCCcHHHHHcCcccEEcc-CCeEEe-C-hhhCCCcchhhhhCCccCeEeecc
Confidence 567776 67777774322112 254332 1 111223567888888888877643
No 174
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=82.21 E-value=0.95 Score=31.21 Aligned_cols=19 Identities=47% Similarity=0.901 Sum_probs=12.7
Q ss_pred cccCcccccccCcccCCCC
Q 024095 156 VFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap 174 (272)
+.++...|+||+.|..++|
T Consensus 34 ~~v~~~~C~GCg~C~~~CP 52 (59)
T PF14697_consen 34 VPVNPDKCIGCGLCVKVCP 52 (59)
T ss_dssp SECE-TT--S-SCCCCCSS
T ss_pred EEeccccCcCcCcccccCC
Confidence 3466788999999999999
No 175
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=81.53 E-value=3.9 Score=32.12 Aligned_cols=47 Identities=23% Similarity=0.347 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCchHH----HHHHHHHHHHHHHhcCcc
Q 024095 81 DATPEQIKKAYYNCMKACHPDLSGDDPET----TNFCMFINEVYAVLSDPV 127 (272)
Q Consensus 81 ~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~----~~~f~~i~~Ay~vLsd~~ 127 (272)
..+..+++.|.|..-++.|||..+..|+. ++-++.|+.-.+.|..+.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 45678899999999999999998877652 345566777666666543
No 176
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=81.11 E-value=0.65 Score=35.42 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=20.4
Q ss_pred CCccccCcccccccCcccCCCCcc
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap~~ 176 (272)
.+.+.+|...|++|+.|..+|+..
T Consensus 53 ~G~V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 53 DGSVRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred CCCEEEcCCCCCcchhhhhhcCCC
Confidence 467889999999999999999644
No 177
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=80.93 E-value=0.64 Score=45.51 Aligned_cols=68 Identities=22% Similarity=0.380 Sum_probs=42.5
Q ss_pred CCccccCcccccccCcccCCCCcc--eeecccccceEEc----cC------CCCH---HHHHHHHHhCcccccccccchh
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAPEV--FKIEEDFGRARVY----NQ------CGIN---EFVQQAIESCPVDCIHRTSAQQ 217 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap~~--F~~e~d~g~a~v~----~q------~g~~---e~i~~Av~~CP~~aI~~~~~~~ 217 (272)
...-+|| ..|.||+.|..+||-. -+++...|..+.+ .| .-|. -.+..+..+||-.+|.|...++
T Consensus 217 kkpryVd-d~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e 295 (622)
T COG1148 217 KKPRYVD-DKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEPE 295 (622)
T ss_pred ccccccc-ccccccccccccCCcccCcccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCCc
Confidence 3445778 7899999999999843 2222222332222 22 1122 2456789999999999987764
Q ss_pred hhhH
Q 024095 218 LSLL 221 (272)
Q Consensus 218 l~~l 221 (272)
.-.+
T Consensus 296 ~ve~ 299 (622)
T COG1148 296 EVEL 299 (622)
T ss_pred EEEE
Confidence 4433
No 178
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=79.94 E-value=2.1 Score=39.74 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC----chHHHHHHHHHHHHHHHhcCccccchhccc
Q 024095 81 DATPEQIKKAYYNCMKACHPDLSGD----DPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 81 ~a~~~~Ik~ayr~l~~~~HPD~~~~----~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
.++..+|..+|+...+..||++... .....+.++.|.+||.+|++...|..+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~ 61 (335)
T KOG0724|consen 3 LASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSW 61 (335)
T ss_pred cccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhh
Confidence 3577889999999999999998742 124577889999999999986665566654
No 179
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=79.64 E-value=0.61 Score=50.25 Aligned_cols=53 Identities=32% Similarity=0.629 Sum_probs=38.8
Q ss_pred CccccCcccccccCcccC--CCCcceeecccccceEEccCCCCHHHHHHHHH-hCcc
Q 024095 154 DHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIE-SCPV 207 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~--~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~-~CP~ 207 (272)
..+++|+..|.|||.|.. -||-+.-.+.+||+.+.++|. .+..+..|++ -||.
T Consensus 650 ~r~~In~~vCeGCgdC~~~snC~ai~p~et~~grK~~Idqs-~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 650 RRVFINELVCEGCGDCSVQSNCLAVQPVETEFGRKRKINQS-SCNKDFSCVKGFCPS 705 (1186)
T ss_pred ccEEEcccccCCchhhhhccCCceeeeccccCCccEEECHh-HCCCccccccCCCCC
Confidence 478899999999999965 467776667778987777761 1223446777 9995
No 180
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=78.57 E-value=0.96 Score=45.31 Aligned_cols=58 Identities=24% Similarity=0.445 Sum_probs=37.6
Q ss_pred ccccCcccccccCccc--CCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 155 HVFVDEFSCIGCKNCN--NVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~--~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..+||+..|.||+.|. ..||-++-.++ + +.+.++|. .+.-+-.+++.||..+|.-+..
T Consensus 571 ~~~Vd~~~CtGC~~C~~~~~Cpsi~~~~~-~-~k~~id~~-~C~GCg~C~~iCP~~a~~~~~~ 630 (640)
T COG4231 571 KYFVDEEKCTGCGDCIVLSGCPSIEPDPT-F-KKARIDPS-SCNGCGSCVEVCPSFAIKEGGE 630 (640)
T ss_pred CceechhhcCCcHHHHhhcCCceEeecCC-C-Cceeeccc-ccccchhhhhcCchhheecccc
Confidence 3789999999999996 33666655544 3 44445541 1222335666699999986544
No 181
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=78.02 E-value=4.6 Score=41.66 Aligned_cols=51 Identities=18% Similarity=0.365 Sum_probs=31.6
Q ss_pred CcccccccCcccCCCCcceeecccc-----cceEEc-cCCCCHHHHHHHHHhCcccc
Q 024095 159 DEFSCIGCKNCNNVAPEVFKIEEDF-----GRARVY-NQCGINEFVQQAIESCPVDC 209 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~F~~e~d~-----g~a~v~-~q~g~~e~i~~Av~~CP~~a 209 (272)
+...|++|+.|...||..+.+.+.. |....+ .....+..+..+.+.||+++
T Consensus 363 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 363 LAAKCTDCGWCTRACPNSLRIKEAMEAAKEGDFSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred hhhcCCCCCcccccCCCCCcHHHHHHHHhcCChhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 4566999999999999765432110 111001 11233456778999999866
No 182
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=77.39 E-value=1.5 Score=40.30 Aligned_cols=55 Identities=22% Similarity=0.285 Sum_probs=36.8
Q ss_pred CCccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccc
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH 211 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~ 211 (272)
...+.++++.|+.|+.|...||-.- |....+ +.-..+.+..+..+.++||.+++.
T Consensus 185 ~~~p~v~e~kc~~c~~cv~~cp~~A-i~~~~~---~~I~~~~ci~c~~c~~ac~~gav~ 239 (354)
T COG2768 185 DEKPVVVEEKCYDCGLCVKICPVGA-ITLTKV---VKIDYEKCIGCGQCMEACPYGAVD 239 (354)
T ss_pred ccCceeeeecccccchhhhhCCCcc-eecccc---eeechhhccchhhhhhhccCcccc
Confidence 3456788999999999999998431 221101 111133345677899999999987
No 183
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=76.05 E-value=0.84 Score=49.22 Aligned_cols=53 Identities=30% Similarity=0.586 Sum_probs=38.3
Q ss_pred CccccCcccccccCcccC--CCCcceeecccccceEEccCCCCHHHHHHHHH-hCcc
Q 024095 154 DHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIE-SCPV 207 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~--~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~-~CP~ 207 (272)
..+++|+..|.|||.|.. -||-+--.+.+||+.+.++|. .+..+..|++ -||.
T Consensus 636 ~r~~In~~vCegCgdC~~~s~C~ai~p~~t~~grK~~Idqs-~Cn~d~sC~~G~CPs 691 (1165)
T PRK09193 636 KRVFINEAVCEGCGDCSVKSNCLSVEPVETEFGRKRRIDQS-SCNKDFSCLKGFCPS 691 (1165)
T ss_pred ceEEEcccccCCchhhhhccCCcceeeccccCCccEEECHh-HCCCccccccCCCCC
Confidence 478999999999999965 467766667678887777761 1233446777 8994
No 184
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=75.91 E-value=1.6 Score=46.55 Aligned_cols=69 Identities=19% Similarity=0.366 Sum_probs=47.4
Q ss_pred cccCccccccc----CcccCCCCcc--eeec-----ccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHH
Q 024095 156 VFVDEFSCIGC----KNCNNVAPEV--FKIE-----EDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDE 224 (272)
Q Consensus 156 v~vDe~~CigC----~~C~~~ap~~--F~~e-----~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~ 224 (272)
+..+...|.+| +.|..+||.- ..++ ..++.+. + ++.+..+-.++..||+++=...++-.|=+.|+-
T Consensus 881 ~~~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g~~~~~~~~~-~--~~~C~~CG~C~~~CP~~~~py~dk~t~f~~~~d 957 (1019)
T PRK09853 881 VAQEAARCLECNYVCEKCVDVCPNRANVSIAVPGFQNRFQIVH-L--DAMCNECGNCAQFCPWNGKPYKDKITLFSLEED 957 (1019)
T ss_pred ccccccccCCcccccchhhhhCCcccccccccCCcccCCceEE-c--CccCccccchhhhCCCCCCcccccceEEcchhh
Confidence 34567789999 9999999954 2232 1122222 2 344556679999999999988888777777766
Q ss_pred Hhh
Q 024095 225 MRR 227 (272)
Q Consensus 225 ~~~ 227 (272)
|..
T Consensus 958 ~~~ 960 (1019)
T PRK09853 958 FEN 960 (1019)
T ss_pred hhc
Confidence 654
No 185
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.78 E-value=0.47 Score=48.12 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=28.6
Q ss_pred cccccccCc--ccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 160 EFSCIGCKN--CNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 160 e~~CigC~~--C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
...|+.|+. |...||..- +..+.+... ++ ......+..++..||.++|.+...
T Consensus 53 ~~~C~~C~~~~C~~~CP~~a-i~~~~~~~~-id-~~~C~~C~~C~~~CP~~ai~~~~~ 107 (654)
T PRK12769 53 AVTCHHCEDAPCARSCPNGA-ISHVDDSIQ-VN-QQKCIGCKSCVVACPFGTMQIVLT 107 (654)
T ss_pred CccCCCCCChhHhhhCCccc-eeccCCeEE-Ee-cccccCcChhcccCCccCeeeccc
Confidence 455777765 777777331 111214332 22 222234567888888888877543
No 186
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=75.67 E-value=1.2 Score=38.80 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=35.9
Q ss_pred cccCccccc-----ccCcccCCCCc---ceeecccc---cc-eEEccCCCCHHHHHHHHHhCccc--ccccccc
Q 024095 156 VFVDEFSCI-----GCKNCNNVAPE---VFKIEEDF---GR-ARVYNQCGINEFVQQAIESCPVD--CIHRTSA 215 (272)
Q Consensus 156 v~vDe~~Ci-----gC~~C~~~ap~---~F~~e~d~---g~-a~v~~q~g~~e~i~~Av~~CP~~--aI~~~~~ 215 (272)
+.+|...|+ +|+.|..+||. ...++... +. .......+....+-.++..||+. ||.+...
T Consensus 126 v~id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~~~~~~~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v~~~ 199 (213)
T TIGR00397 126 VLVGHETCLNYKGLNCSICVRVCPIRGEAISLKPIENERGRLQIPTVDSAKCTGCGTCEKHCVLSEAAIRVLPR 199 (213)
T ss_pred EEECCCCcccCCCCCcccchhhCCCCcceEEEecccccCCcccceEEecccCCCcchhhHhCCCCCCeEEEeeh
Confidence 456777887 99999999995 33343210 10 01111122334556899999987 7776554
No 187
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=74.13 E-value=1.8 Score=39.53 Aligned_cols=56 Identities=14% Similarity=0.359 Sum_probs=36.9
Q ss_pred ccCcccccccCc--ccCCCCc-c-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 157 FVDEFSCIGCKN--CNNVAPE-V-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~CigC~~--C~~~ap~-~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+....|..|+. |..+||. . +..+++ |... +++ .....+..++..||.++|.+...
T Consensus 87 ~~~~~~C~hC~~p~Cv~aCP~~gA~~~~~~-G~V~-id~-dkCigC~~Cv~aCP~~a~~~~~~ 146 (283)
T TIGR01582 87 LIRKDGCMHCREPGCLKACPAPGAIIQYQN-GIVD-FDH-SKCIGCGYCIVGCPFNIPRYDKV 146 (283)
T ss_pred EECCccCCCCCCccccCCCCcCCeEEEcCC-CcEE-EeH-HHCCcchHHHhhCCCCCcEEcCC
Confidence 345566999998 9999995 3 444443 5432 322 11223568999999999998653
No 188
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=74.08 E-value=0.94 Score=42.32 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=33.3
Q ss_pred cccCcccccccCcccCCCCc-ceeecccccce-----EEcc---CCCCHHHHHHHHHhCccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRA-----RVYN---QCGINEFVQQAIESCPVDCI 210 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a-----~v~~---q~g~~e~i~~Av~~CP~~aI 210 (272)
..++...|++|+.|..+||. .+.++++.... ..+. .......+..++..||...+
T Consensus 7 ~vi~~~~C~gCg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~ 70 (341)
T PRK09326 7 EVIEYDVCTACGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDG 70 (341)
T ss_pred cEECcccCcChHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCcc
Confidence 35778889999999999993 45554431100 0000 11223345678999998554
No 189
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=71.15 E-value=1.3 Score=47.92 Aligned_cols=52 Identities=29% Similarity=0.565 Sum_probs=36.3
Q ss_pred CccccCcccccccCcccC--CCCcceeecccccceEEccCCCCHHHHHHHHH-hCc
Q 024095 154 DHVFVDEFSCIGCKNCNN--VAPEVFKIEEDFGRARVYNQCGINEFVQQAIE-SCP 206 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~--~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~-~CP 206 (272)
..+++|+..|.|||.|.. -||-+-..+.+||+.+.++| ..+..+-.|++ -||
T Consensus 622 ~~~~In~~vCegCg~C~~~s~C~ai~~~~t~~grK~~Id~-s~Cn~~~~C~~G~CP 676 (1159)
T PRK13030 622 RRLFINEAVCEGCGDCGVQSNCLSVEPVETPFGRKRRIDQ-SSCNKDFSCVNGFCP 676 (1159)
T ss_pred eeEEEcccccCCchhhhhccCCcceeeccccCCccEEECH-HHCCCccccccCCCC
Confidence 478899999999999965 36766556666788776765 11223346666 888
No 190
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=70.67 E-value=1.7 Score=30.89 Aligned_cols=21 Identities=38% Similarity=0.860 Sum_probs=16.8
Q ss_pred CcccccccCcccCCCCcceee
Q 024095 159 DEFSCIGCKNCNNVAPEVFKI 179 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~F~~ 179 (272)
....|+|||.|..++|....|
T Consensus 48 ~~~~CVgCgrCv~~CP~~Idi 68 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAGIDI 68 (69)
T ss_pred CCccCCCcChHhhhcCCCCCc
Confidence 456699999999999976443
No 191
>PRK09898 hypothetical protein; Provisional
Probab=70.61 E-value=2 Score=37.16 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=36.9
Q ss_pred cccCcccccccC--cccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024095 156 VFVDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 156 v~vDe~~CigC~--~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
+.++...|++|+ .|..+||.. +..++++|... ++. .....+..++..||.++|.+.
T Consensus 116 ~~~~~~~C~~C~~~~C~~~CP~gAi~~~~~~g~v~-vd~-~~CigC~~C~~aCP~~ai~~~ 174 (208)
T PRK09898 116 LNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCIT-VDH-KRCIGCSACTTACPWMMATVN 174 (208)
T ss_pred EEEeCccCCCccCcchhhhCCcceEEeeccCCeEE-ecc-ccCCCcCcccccCCCCCCEec
Confidence 345667899998 899999943 45555445433 322 112235678899999999764
No 192
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=69.51 E-value=1.7 Score=32.76 Aligned_cols=23 Identities=35% Similarity=0.722 Sum_probs=18.6
Q ss_pred cCcccccccCcccCCCCc-ceeec
Q 024095 158 VDEFSCIGCKNCNNVAPE-VFKIE 180 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~-~F~~e 180 (272)
+|-..|-|||.|+++||. -..|.
T Consensus 63 idYdyCKGCGICa~vCP~kaI~Mv 86 (91)
T COG1144 63 IDYDYCKGCGICANVCPVKAIEMV 86 (91)
T ss_pred eEcccccCceechhhCChhheEeE
Confidence 788899999999999994 34443
No 193
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=69.40 E-value=2.9 Score=37.26 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=35.2
Q ss_pred cccccccCc--ccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 160 EFSCIGCKN--CNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 160 e~~CigC~~--C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
...|++|.. |..+||.. +..+++ |.. +++. .....+..++..||.+||.+...
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~~~~-G~v-~id~-~~CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQRED-GIV-VVDN-KRCVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred chhcCCcCCccCccccCCCCEEECCC-CCE-EEcH-HHCCCHHHHHHhcCCCCCEEeCC
Confidence 567999997 99999943 333333 543 2322 11234578999999999998654
No 194
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=66.76 E-value=1.5 Score=39.43 Aligned_cols=57 Identities=19% Similarity=0.430 Sum_probs=35.6
Q ss_pred ccCccccc-----ccCcccCCCCc---ceeeccc----ccce----EEccCCCCHHHHHHHHHhCccc--cccccc
Q 024095 157 FVDEFSCI-----GCKNCNNVAPE---VFKIEED----FGRA----RVYNQCGINEFVQQAIESCPVD--CIHRTS 214 (272)
Q Consensus 157 ~vDe~~Ci-----gC~~C~~~ap~---~F~~e~d----~g~a----~v~~q~g~~e~i~~Av~~CP~~--aI~~~~ 214 (272)
.+|...|+ +|+.|..+||. ...++.. .|.. -+++. ....-+..++..||++ ||.+..
T Consensus 133 ~id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~-d~C~gCG~C~~aCP~~~~AI~v~p 207 (254)
T PRK09476 133 LVDQENCLNFQGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHS-DACTGCGKCEKACVLEKAAIKVLP 207 (254)
T ss_pred ecchhhccccCCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeH-HHCcCcChhhHhcCCCcceEEEeh
Confidence 37888898 89999999993 4555431 1110 11211 1122356899999998 887543
No 195
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=66.62 E-value=1.6 Score=44.41 Aligned_cols=43 Identities=21% Similarity=0.406 Sum_probs=29.4
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIH 211 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~ 211 (272)
.+..|..+||.|+.|+.+|.++= |. ..-.+..+...||++++.
T Consensus 610 ~i~~D~~kCI~CgrCv~~C~ev~------~~--------~~~~~~~~~~~~~~~~~~ 652 (652)
T PRK12814 610 DIRFEREKCVDCGICVRTLEEYG------AE--------GNTDIEVLAESCPTGALS 652 (652)
T ss_pred CeEeccccccCchHHHHHHHHhc------cc--------chhhhhhhhccCCcccCC
Confidence 47789999999999999998651 11 111223444569998863
No 196
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=66.05 E-value=2.5 Score=42.42 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=21.2
Q ss_pred CCccccCcccccccCcccCCCCcce
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAPEVF 177 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap~~F 177 (272)
.....+|+..|+||+.|.++||--+
T Consensus 600 ~~k~~id~~~C~GCg~C~~iCP~~a 624 (640)
T COG4231 600 FKKARIDPSSCNGCGSCVEVCPSFA 624 (640)
T ss_pred CCceeecccccccchhhhhcCchhh
Confidence 3677899999999999999998543
No 197
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=66.01 E-value=2.8 Score=34.62 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=35.9
Q ss_pred cCcccccccC--cccCCCCcc-eeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 158 VDEFSCIGCK--NCNNVAPEV-FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 158 vDe~~CigC~--~C~~~ap~~-F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.....|++|+ .|..++|.. +..+.+.|.. .++. ........++..||.++|.+...
T Consensus 59 ~~~~~C~~C~~~~C~~~CP~~ai~~~~~~~~~-~i~~-~~C~~C~~C~~aCP~~ai~~~~~ 117 (161)
T TIGR02951 59 YISISCNHCADPACVKNCPTGAMYKREEDGLV-LVDQ-DKCIGCRYCVWACPYGAPQYDPQ 117 (161)
T ss_pred EcCccCCCcCCcchHHhCCCCCEEeecCCCcE-EECH-HhCCCchHHHhhCCCCCcEEcCC
Confidence 3466799999 899999943 4443222432 2221 11234568999999999998654
No 198
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=62.76 E-value=7.3 Score=40.40 Aligned_cols=53 Identities=17% Similarity=0.415 Sum_probs=33.0
Q ss_pred cccCcccccccCcccCCCCcceeecccc-----cce-EEccCCCCHHHHHHHHHhCccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDF-----GRA-RVYNQCGINEFVQQAIESCPVD 208 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~F~~e~d~-----g~a-~v~~q~g~~e~i~~Av~~CP~~ 208 (272)
+......|++|+.|..+||..+.+.+.. |.. .+......+..+..+.+.||.+
T Consensus 394 Ll~~~~kCI~CG~Cv~aCP~~l~i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~g 452 (784)
T TIGR00314 394 LMELANKCTQCGNCVRTCPNSLRVDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKN 452 (784)
T ss_pred HhhhcccCCCcccchhhCCCCcchHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCC
Confidence 3345678999999999999764432210 211 1111123456778999999985
No 199
>PRK13409 putative ATPase RIL; Provisional
Probab=62.00 E-value=3.7 Score=41.30 Aligned_cols=21 Identities=33% Similarity=0.736 Sum_probs=18.4
Q ss_pred CccccCcccccccCcccCCCC
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap 174 (272)
...++.|..|||||.|+.-||
T Consensus 42 ~~~~~~e~~c~~c~~c~~~cp 62 (590)
T PRK13409 42 GKPVISEELCIGCGICVKKCP 62 (590)
T ss_pred CCceeeHhhccccccccccCC
Confidence 456788899999999999998
No 200
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=61.37 E-value=4.8 Score=39.01 Aligned_cols=52 Identities=27% Similarity=0.588 Sum_probs=31.4
Q ss_pred ccCcccccccCcccCCCCcceeeccc-cc----ce--EEc-----------cCCCCHHHHHHHHHhCccc
Q 024095 157 FVDEFSCIGCKNCNNVAPEVFKIEED-FG----RA--RVY-----------NQCGINEFVQQAIESCPVD 208 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~~F~~e~d-~g----~a--~v~-----------~q~g~~e~i~~Av~~CP~~ 208 (272)
+.+...||.||.|..+||-.-.+.+. || .. .+. .....+..+..+.+.||++
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~g 358 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVK 358 (432)
T ss_pred hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCC
Confidence 44577899999999999954333211 11 10 000 0123445678999999984
No 201
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=61.14 E-value=3.2 Score=42.63 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=29.4
Q ss_pred CcccccccCcccCCCCccee-e-------cccccceEEccCCCCHHHHHHHHHhCccc
Q 024095 159 DEFSCIGCKNCNNVAPEVFK-I-------EEDFGRARVYNQCGINEFVQQAIESCPVD 208 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~F~-~-------e~d~g~a~v~~q~g~~e~i~~Av~~CP~~ 208 (272)
++..||+||.|..+||..-. + ..++.....+ ...++..+..|...||.+
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~-~~~~CieCG~C~~vCPs~ 424 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEY-NLFDCIECGACAYVCPSN 424 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhc-ChhhccccCcccccCCCC
Confidence 66889999999999994311 1 1222222111 122344466788999986
No 202
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=61.12 E-value=4.2 Score=34.38 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=20.5
Q ss_pred CCCccccCcccccccCcccCCCCcc
Q 024095 152 PKDHVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 152 ~~~~v~vDe~~CigC~~C~~~ap~~ 176 (272)
......+|-..||-||.|..+||..
T Consensus 86 ~~~~~~In~grCIfCg~C~e~CPt~ 110 (172)
T COG1143 86 KPKRPDINLGRCIFCGLCVEVCPTG 110 (172)
T ss_pred ccccceeccccccccCchhhhCchh
Confidence 3456678999999999999999843
No 203
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=59.94 E-value=1 Score=40.04 Aligned_cols=15 Identities=33% Similarity=0.957 Sum_probs=13.1
Q ss_pred cccccCcccCCCCcc
Q 024095 162 SCIGCKNCNNVAPEV 176 (272)
Q Consensus 162 ~CigC~~C~~~ap~~ 176 (272)
.||.||.|...||..
T Consensus 143 ~CI~Cg~C~s~CP~~ 157 (234)
T COG0479 143 ECILCGCCTAACPSI 157 (234)
T ss_pred hccccchhhhhCCcc
Confidence 499999999999855
No 204
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=59.75 E-value=4.1 Score=28.15 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.0
Q ss_pred HHHHHHhCcccccccccch
Q 024095 198 VQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 198 i~~Av~~CP~~aI~~~~~~ 216 (272)
....++.||++||..++.+
T Consensus 5 C~~C~~~CP~~AI~~~~~~ 23 (67)
T PF13484_consen 5 CGKCAEACPTGAISGEDEP 23 (67)
T ss_pred hhHHHHhCcHhhccCCCcC
Confidence 4568899999999988443
No 205
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=58.42 E-value=16 Score=34.62 Aligned_cols=84 Identities=17% Similarity=0.334 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHH-------hCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccccccccCCCCCCCCCCCCcc
Q 024095 84 PEQIKKAYYNCMKA-------CHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGYSLIATNPFLDDSCPKDHV 156 (272)
Q Consensus 84 ~~~Ik~ayr~l~~~-------~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~~~~~~~~~~~~~~~~~~v 156 (272)
.++|+++|++.+.. |-| -+..-..-+.|...|.++..-.-...|..|....+ ..-|+.+ .
T Consensus 280 l~~v~~~~~~~~~v~Ct~C~yC~P--CP~gInIP~~f~lyN~~~~~~~~~~~~~~Y~~l~~-----~~~~~~~------~ 346 (391)
T COG1453 280 LEKVEEIYRESLKVPCTGCRYCLP--CPSGINIPEIFRLYNLAVAFDDVDYAKFRYNMLEN-----GGHWFPG------P 346 (391)
T ss_pred HHHHHHHHHHHhcCCCccccccCc--CCCCCChHHHHHHHHHHHhhccchhhHHHHHHHhc-----cCccCCC------C
Confidence 45678888877654 334 23333456778888887765444445666765422 1112211 1
Q ss_pred ccCcccccccCcccCCCCcceeec
Q 024095 157 FVDEFSCIGCKNCNNVAPEVFKIE 180 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~~F~~e 180 (272)
..+...|++||.|...||+.-.|.
T Consensus 347 ~g~as~CieCgqCl~~CPq~l~Ip 370 (391)
T COG1453 347 KGKASDCIECGQCLEKCPQHLDIP 370 (391)
T ss_pred cccccccchhhhhhhcCCCcCcHH
Confidence 123456999999999999886664
No 206
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=57.59 E-value=4.6 Score=39.54 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=35.3
Q ss_pred ccCcccccc--c-CcccCCCCcc------eeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 157 FVDEFSCIG--C-KNCNNVAPEV------FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~Cig--C-~~C~~~ap~~------F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
.+|...|.- | ..|...||-+ ..++++.|+. ++. +.-+--+--|+.-||-+||.++.-+
T Consensus 7 vvd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~gkp-vIs-E~lCiGCGICvkkCPF~AI~IvnLP 73 (591)
T COG1245 7 VVDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDTGKP-VIS-EELCIGCGICVKKCPFDAISIVNLP 73 (591)
T ss_pred EeehhccCccccchhhhhcCCCccCCCeeEEecCCCCCc-eeE-hhhhccchhhhccCCcceEEEecCc
Confidence 456666633 3 4677777633 5555655655 222 1112224588899999999998765
No 207
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=57.33 E-value=5.9 Score=33.31 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.2
Q ss_pred CCCccccCcccccccCcccCCCC
Q 024095 152 PKDHVFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 152 ~~~~v~vDe~~CigC~~C~~~ap 174 (272)
.-....+|-..||-||.|...||
T Consensus 141 RttrYdIDmtkCIyCG~CqEaCP 163 (212)
T KOG3256|consen 141 RTTRYDIDMTKCIYCGFCQEACP 163 (212)
T ss_pred cceeecccceeeeeecchhhhCC
Confidence 33445689999999999999998
No 208
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=57.22 E-value=5.9 Score=36.01 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=19.3
Q ss_pred CccccCcccccccCcccCCCCcc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~~ 176 (272)
..+.+++..|.|||.|..+||..
T Consensus 92 ~~~~~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 92 GKPVLNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred CceecCcccccCcccceeeCCCc
Confidence 34567889999999999999966
No 209
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=57.20 E-value=2.2 Score=21.26 Aligned_cols=12 Identities=50% Similarity=1.367 Sum_probs=5.8
Q ss_pred ccccCcccCCCC
Q 024095 163 CIGCKNCNNVAP 174 (272)
Q Consensus 163 CigC~~C~~~ap 174 (272)
|++|+.|..++|
T Consensus 1 C~~C~~C~~~Cp 12 (15)
T PF12798_consen 1 CTGCGACVEVCP 12 (15)
T ss_pred CCCchHHHHHhc
Confidence 344555554444
No 210
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.61 E-value=20 Score=28.70 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=33.8
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD 105 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~ 105 (272)
+.-..--.||+|+...+.++|.+.|..|-....+.+.+.
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 445567789999999999999999999999998877776
No 211
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=55.20 E-value=4.4 Score=39.63 Aligned_cols=19 Identities=37% Similarity=0.801 Sum_probs=16.8
Q ss_pred cccCcccccccCcccCCCC
Q 024095 156 VFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap 174 (272)
..+.|..|||||.|..-||
T Consensus 45 pvIsE~lCiGCGICvkkCP 63 (591)
T COG1245 45 PVISEELCIGCGICVKKCP 63 (591)
T ss_pred ceeEhhhhccchhhhccCC
Confidence 4677888999999999998
No 212
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=53.88 E-value=6.1 Score=33.61 Aligned_cols=52 Identities=23% Similarity=0.414 Sum_probs=31.0
Q ss_pred cccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHH--HHHHHhCcccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFV--QQAIESCPVDCIH 211 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i--~~Av~~CP~~aI~ 211 (272)
..+|...|++|+.|..+||. ...+.+++..+. .+..+.+ ..++..+|...+.
T Consensus 97 ~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~~~----~~r~~l~~~~~~l~~~p~~~~~ 151 (183)
T TIGR00403 97 YSIDFGVCIFCGNCVEYCPTNCLSMTEEYELST----YDRHELNYDQIALGRLPISITE 151 (183)
T ss_pred eecCcccccCcCchhhhcCCCCeeccccccccc----ccHHHHhccHHHhcCCCeeeec
Confidence 34677789999999999994 455655443221 1112222 2445677866654
No 213
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=53.23 E-value=5 Score=37.14 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=8.4
Q ss_pred CCcCCcccccCcCC
Q 024095 67 AIADDYYAVLGLLP 80 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~ 80 (272)
...+.=++|+|+++
T Consensus 64 iT~rqg~ei~~i~~ 77 (317)
T COG2221 64 ITSRQGLEIPGISP 77 (317)
T ss_pred EEecCceEeccCCH
Confidence 34556677777653
No 214
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=52.54 E-value=5 Score=29.53 Aligned_cols=19 Identities=37% Similarity=0.947 Sum_probs=16.6
Q ss_pred ccCcccccccCcccCCCCc
Q 024095 157 FVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~ 175 (272)
.+|...|++|+.|..+||.
T Consensus 66 ~i~~~~C~~Cg~C~~~CP~ 84 (91)
T TIGR02936 66 VANPGNCIGCGACARVCPK 84 (91)
T ss_pred ecCCccCcChhhhhhhCCH
Confidence 4678889999999999984
No 215
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=51.88 E-value=7 Score=36.50 Aligned_cols=53 Identities=19% Similarity=0.444 Sum_probs=34.8
Q ss_pred CcccccccC--cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024095 159 DEFSCIGCK--NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 159 De~~CigC~--~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
....|+.|+ .|..+||. .+..+++.|.. .+++ .....+..++.+||.++|.+.
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~gAi~k~~~~g~V-~id~-dkCigCg~Cv~aCP~gai~~~ 163 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPVSALTKDPKTGIV-HYDK-DVCTGCRYCMVACPFNVPKYD 163 (328)
T ss_pred ccccCCCcCchhhHhhCCCCCEEecccCCcc-cCCH-HHcCcccHHHHhCCccceecc
Confidence 345699998 89999994 45554433433 2222 122346789999999999864
No 216
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=51.08 E-value=7.9 Score=39.25 Aligned_cols=54 Identities=13% Similarity=0.367 Sum_probs=36.1
Q ss_pred cCcccccccCc--ccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 158 VDEFSCIGCKN--CNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 158 vDe~~CigC~~--C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+...|..|+. |..+|| ..+.+++ +.. .+. ......+..++..||.++|.+.+.
T Consensus 51 ~~~~~C~~C~~~~C~~~CP~~ai~~~~--~~v-~~d-~~~C~gC~~C~~~CP~~ai~~~~~ 107 (639)
T PRK12809 51 ANPVACHHCNNAPCVTACPVNALTFQS--DSV-QLD-EQKCIGCKRCAIACPFGVVEMVDT 107 (639)
T ss_pred ccCCCCcCcCChhHHhhCCcCceeccc--cce-ecC-hhhCcchhhHhhhcCCCCEEccCC
Confidence 35677999997 999999 3444443 322 222 222345678999999999987653
No 217
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=46.78 E-value=75 Score=23.12 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=25.0
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhC
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACH 99 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~H 99 (272)
++--+++|+++-+++.||+.|-++..++..
T Consensus 3 RNIk~LfnfdPPAT~~EvrdAAlQfVRKlS 32 (88)
T COG5552 3 RNIKELFNFDPPATPVEVRDAALQFVRKLS 32 (88)
T ss_pred cchHHHhCCCCCCCcHHHHHHHHHHHHHhc
Confidence 456678999999999999999888777753
No 218
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=46.31 E-value=22 Score=27.06 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=5.9
Q ss_pred HHHHHhCcccccc
Q 024095 199 QQAIESCPVDCIH 211 (272)
Q Consensus 199 ~~Av~~CP~~aI~ 211 (272)
+.++.+||++||.
T Consensus 37 k~C~~aCPagA~~ 49 (95)
T PRK15449 37 ELLVKACPAGLYK 49 (95)
T ss_pred hHHHHHCCHhhcE
Confidence 3444444444443
No 219
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=46.03 E-value=10 Score=31.70 Aligned_cols=27 Identities=30% Similarity=0.571 Sum_probs=20.0
Q ss_pred cccCcccccccCcccCCCCc-ceeeccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE-VFKIEED 182 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~-~F~~e~d 182 (272)
..+|...|++|+.|..+||. ...+...
T Consensus 94 ~~id~~~C~~Cg~C~~~CP~~AI~~~~~ 121 (167)
T CHL00014 94 YSIDFGVCIFCGNCVEYCPTNCLSMTEE 121 (167)
T ss_pred ccCCCCcCcCccchHhhcCcCceecCCc
Confidence 34566789999999999994 4555543
No 220
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=45.57 E-value=8 Score=36.27 Aligned_cols=22 Identities=36% Similarity=0.706 Sum_probs=19.3
Q ss_pred CccccCcccccccCcccCCCCc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~ 175 (272)
..+.+|...|++|+.|..+||.
T Consensus 207 ~~~~id~~~Ci~Cg~Ci~~CP~ 228 (341)
T TIGR02066 207 KSLEVDVEKCIYCGNCYTMCPA 228 (341)
T ss_pred CceeeccccCCcCCchHHhCch
Confidence 4568899999999999999984
No 221
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=45.17 E-value=11 Score=29.43 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=19.7
Q ss_pred ccCcccccccCcccCCCCc-ceeeccc
Q 024095 157 FVDEFSCIGCKNCNNVAPE-VFKIEED 182 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~-~F~~e~d 182 (272)
.++...|++|+.|..+||. .+.+...
T Consensus 78 ~~~~~~C~~Cg~Cv~~CP~~al~~~~~ 104 (122)
T TIGR01971 78 QINFGRCIFCGLCEEACPTDAIVLTPE 104 (122)
T ss_pred eECcccCCCCCchhhhCCCccccccce
Confidence 3566779999999999994 4656554
No 222
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=44.19 E-value=9.2 Score=29.91 Aligned_cols=27 Identities=26% Similarity=0.600 Sum_probs=20.4
Q ss_pred cccCcccccccCcccCCCC-cceeeccc
Q 024095 156 VFVDEFSCIGCKNCNNVAP-EVFKIEED 182 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap-~~F~~e~d 182 (272)
+.++...|++|+.|..+|| +.+.+.++
T Consensus 68 ~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 95 (120)
T PRK08348 68 VALWTGRCVFCGQCVDVCPTGALQMSDD 95 (120)
T ss_pred eEecCCcCcChhhhHHhCCcCcEEeccc
Confidence 3456678999999999999 55666554
No 223
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=43.96 E-value=13 Score=30.85 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.7
Q ss_pred ccCcccccccCcccCCCC-cceeeccc
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEED 182 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~d 182 (272)
.++...|++|+.|..+|| +...+...
T Consensus 93 ~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~ 119 (164)
T PRK05888 93 DINFGRCIFCGFCEEACPTDAIVETPD 119 (164)
T ss_pred ecCCCcCcccCcchhhcCcCcceecCc
Confidence 367788999999999999 44444443
No 224
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=42.42 E-value=8.9 Score=35.94 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=27.7
Q ss_pred ccccCcccCCCCcc-eeeccc--ccceEEccCCCCHHHHHHHHHhCcccccc
Q 024095 163 CIGCKNCNNVAPEV-FKIEED--FGRARVYNQCGINEFVQQAIESCPVDCIH 211 (272)
Q Consensus 163 CigC~~C~~~ap~~-F~~e~d--~g~a~v~~q~g~~e~i~~Av~~CP~~aI~ 211 (272)
|.+|+.|...||.. -.++++ .+.. +++ ...+-.+..++..||..||.
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~~~~~~~~~-~id-~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPRRDGKNKSL-EVD-VEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred hcCCCceEeeCchhhceecccCCCCce-eec-cccCCcCCchHHhCchhhcc
Confidence 44558888888733 444322 2332 222 22334556888999998886
No 225
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=40.11 E-value=9.7 Score=39.54 Aligned_cols=53 Identities=19% Similarity=0.268 Sum_probs=31.9
Q ss_pred ccCcccccccCcccCCCCcceeeccc-----ccce-EEccCCCCHHHHHHHHHhCcccc
Q 024095 157 FVDEFSCIGCKNCNNVAPEVFKIEED-----FGRA-RVYNQCGINEFVQQAIESCPVDC 209 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~~F~~e~d-----~g~a-~v~~q~g~~e~i~~Av~~CP~~a 209 (272)
..+...|++|+.|..+||..+.+... .|.. ......+.+..+..+.+.||++.
T Consensus 400 ~~eadrCI~CG~Cv~aCP~~l~i~~~I~~a~~G~~~~l~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 400 KELAKKCTECGWCVRVCPNELPIPEAMEAAAKGDLSKLEDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred HHhhhhCcCCCCccccCCCCcchhHHHHHHhcCChhhhhhhhhhccchhHHhhhCCCCC
Confidence 34556799999999999975432110 0110 00011234556778999999863
No 226
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=39.17 E-value=15 Score=38.11 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=18.2
Q ss_pred cccCcccccccCcccCCCCcceee
Q 024095 156 VFVDEFSCIGCKNCNNVAPEVFKI 179 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~F~~ 179 (272)
.-+.+..|+.||+|+.+||-.--|
T Consensus 187 ~~i~~SSCVsCG~CvtVCP~nALm 210 (978)
T COG3383 187 VPINESSCVSCGACVTVCPVNALM 210 (978)
T ss_pred CccccccccccCccceecchhhhh
Confidence 345677899999999999954333
No 227
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=38.41 E-value=19 Score=30.55 Aligned_cols=28 Identities=25% Similarity=0.598 Sum_probs=20.7
Q ss_pred ccCcccccccCcccCCCC-cceeeccccc
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFG 184 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~d~g 184 (272)
.++...|++|+.|..+|| +...+.+++.
T Consensus 69 ~~~~~~C~~Cg~C~~~CPt~AI~~~~~~~ 97 (181)
T PRK08222 69 QLYLGRCIYCGRCEEVCPTRAIQLTNNFE 97 (181)
T ss_pred eeccCcCcCCCCcccccCcCeEEecccee
Confidence 445678999999999999 4555655443
No 228
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=38.16 E-value=16 Score=30.73 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=20.0
Q ss_pred ccCcccccccCcccCCCCc-ceeeccc
Q 024095 157 FVDEFSCIGCKNCNNVAPE-VFKIEED 182 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~-~F~~e~d 182 (272)
.+|...|++|+.|..+||. ...+..+
T Consensus 69 ~i~~~~C~~Cg~C~~vCP~~AI~~~~~ 95 (180)
T PRK12387 69 EFNLGRCIFCGRCEEVCPTAAIKLSQE 95 (180)
T ss_pred eeccccCcCccchhhhcCcCceEccCc
Confidence 4677889999999999994 4555544
No 229
>PRK06273 ferredoxin; Provisional
Probab=36.43 E-value=16 Score=30.54 Aligned_cols=21 Identities=24% Similarity=0.573 Sum_probs=17.9
Q ss_pred cccCcccccccCcccCCCCcc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~ 176 (272)
..+|...|++|+.|..+||..
T Consensus 86 ~~Id~~kCi~Cg~C~~aCP~~ 106 (165)
T PRK06273 86 PKIDYEKCVYCLYCHDFCPVF 106 (165)
T ss_pred eecccccCcCCCCcchhCCHh
Confidence 456888999999999999953
No 230
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=36.41 E-value=9.5 Score=30.66 Aligned_cols=20 Identities=40% Similarity=0.680 Sum_probs=16.9
Q ss_pred ccCcccccccCcccCCCCcc
Q 024095 157 FVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~~ 176 (272)
.++...|++|+.|..+||..
T Consensus 85 ~i~~~~C~~Cg~Cv~vCP~~ 104 (133)
T PRK09625 85 GVDYSHCKGCGVCVEVCPTN 104 (133)
T ss_pred EeCcCcCcChhHHHHHCCcC
Confidence 46677899999999999954
No 231
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=35.62 E-value=17 Score=33.98 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=27.6
Q ss_pred cCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCcc
Q 024095 158 VDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPV 207 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~ 207 (272)
+|...|.+||.|..+||....+.++.+. ... .....-.-.+...||.
T Consensus 2 ~~~~~c~~Cg~C~a~cp~~i~~~~~~~~--~~~-~c~~~~~~~~~~~cp~ 48 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPYAITERDEAPL--LIE-ECMDNGHGTCLKVCPE 48 (332)
T ss_pred CcCcccccchhhHhhCCceEEEecccch--hhh-hhhcccchHHhhhCcc
Confidence 3566799999999999984444443222 111 1111123367788993
No 232
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=35.60 E-value=14 Score=40.31 Aligned_cols=21 Identities=29% Similarity=0.933 Sum_probs=18.1
Q ss_pred cccCcccccccCcccCCCCcc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~ 176 (272)
+.++...|++|+.|..+||..
T Consensus 734 i~i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 734 IQISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred EEeccccCcCccchhhhcCCC
Confidence 456788999999999999964
No 233
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=35.56 E-value=32 Score=31.32 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=12.8
Q ss_pred HHHHHHHHhCcccccc
Q 024095 196 EFVQQAIESCPVDCIH 211 (272)
Q Consensus 196 e~i~~Av~~CP~~aI~ 211 (272)
..+..+++.||++||.
T Consensus 162 ~~C~~C~~aCPt~AI~ 177 (282)
T TIGR00276 162 GRCTKCIDACPTQALV 177 (282)
T ss_pred ccHHHHHHhcCccccc
Confidence 4566888999999986
No 234
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=35.35 E-value=24 Score=17.00 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhc
Q 024095 112 FCMFINEVYAVLS 124 (272)
Q Consensus 112 ~f~~i~~Ay~vLs 124 (272)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3567778887764
No 235
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=34.87 E-value=14 Score=33.97 Aligned_cols=22 Identities=36% Similarity=0.715 Sum_probs=18.7
Q ss_pred ccccCcccccccCcccCCCCcc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~ 176 (272)
.+.+|...|++|+.|..+||..
T Consensus 195 ~~~id~~~C~~Cg~Cv~~CP~~ 216 (314)
T TIGR02912 195 KVVRDHSKCIGCGECVLKCPTG 216 (314)
T ss_pred eEEeCCCcCcCcchhhhhCCHh
Confidence 4567888999999999999954
No 236
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=34.14 E-value=12 Score=34.64 Aligned_cols=15 Identities=20% Similarity=0.612 Sum_probs=9.1
Q ss_pred HHHHhCccccccccc
Q 024095 200 QAIESCPVDCIHRTS 214 (272)
Q Consensus 200 ~Av~~CP~~aI~~~~ 214 (272)
.+++.||++||.|..
T Consensus 179 ~cv~~C~~gAI~~~~ 193 (317)
T COG2221 179 KCVKVCPTGAITWDG 193 (317)
T ss_pred hHHHhCCCCceeecc
Confidence 556666666666654
No 237
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=32.99 E-value=45 Score=31.32 Aligned_cols=24 Identities=8% Similarity=0.267 Sum_probs=18.8
Q ss_pred CHHHHHHHHHhCcccccccccchh
Q 024095 194 INEFVQQAIESCPVDCIHRTSAQQ 217 (272)
Q Consensus 194 ~~e~i~~Av~~CP~~aI~~~~~~~ 217 (272)
.+..+..++++||++||.-+..-+
T Consensus 186 ~Cg~C~~CldaCPt~Al~~~~~~~ 209 (337)
T COG1600 186 HCGSCTRCLDACPTGALVAPYTVD 209 (337)
T ss_pred cChhhHHHHhhCCcccccCCCccc
Confidence 456789999999999998655543
No 238
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=32.62 E-value=26 Score=33.66 Aligned_cols=26 Identities=23% Similarity=0.618 Sum_probs=21.0
Q ss_pred ccccCcccccccCcccCCCCcceeec
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEVFKIE 180 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~F~~e 180 (272)
.+.+|...|+.|++|..++|......
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~a~~~g 291 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPKALHPG 291 (402)
T ss_pred eEEEcchhcCcCccccccCcccccCC
Confidence 56788899999999999998754443
No 239
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=32.59 E-value=35 Score=30.63 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHh-----cCccccc
Q 024095 110 TNFCMFINEVYAVL-----SDPVQRM 130 (272)
Q Consensus 110 ~~~f~~i~~Ay~vL-----sd~~~R~ 130 (272)
..+.++||||+|+| +||++|.
T Consensus 127 RRRLkKVNEAFE~LKRrT~~NPNQRL 152 (284)
T KOG3960|consen 127 RRRLKKVNEAFETLKRRTSSNPNQRL 152 (284)
T ss_pred HHHHHHHHHHHHHHHhhcCCCccccc
Confidence 35678999999997 5777764
No 240
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=31.98 E-value=18 Score=38.92 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=15.6
Q ss_pred cccCcccccccCcccCCCCc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~ 175 (272)
+..++..|++||.|..+||.
T Consensus 921 ~~~~~~~C~~CG~C~~~CP~ 940 (1019)
T PRK09853 921 IVHLDAMCNECGNCAQFCPW 940 (1019)
T ss_pred eEEcCccCccccchhhhCCC
Confidence 33334789999999999984
No 241
>PRK06991 ferredoxin; Provisional
Probab=31.97 E-value=14 Score=33.47 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.1
Q ss_pred cccCcccccccCcccCCCCc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~ 175 (272)
..++...|++|+.|..+||.
T Consensus 110 ~~v~~~~CigCg~Cv~vCP~ 129 (270)
T PRK06991 110 HTVLADLCTGCDLCVPPCPV 129 (270)
T ss_pred eeeCHhhCCCchHHHhhCCc
Confidence 34677889999999999994
No 242
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=31.79 E-value=18 Score=32.58 Aligned_cols=23 Identities=39% Similarity=0.795 Sum_probs=17.9
Q ss_pred cCcccccccCcccCCCCc-ceeec
Q 024095 158 VDEFSCIGCKNCNNVAPE-VFKIE 180 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~-~F~~e 180 (272)
++...|++|+.|..+||. ...+.
T Consensus 239 i~~~~C~~Cg~Cv~~CP~~Ai~~~ 262 (271)
T PRK09477 239 VTSGDCITCGRCIDVCSEDVFNFT 262 (271)
T ss_pred eCcccCcChhHHHhhcCccceeec
Confidence 667789999999999994 34443
No 243
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=31.40 E-value=16 Score=35.03 Aligned_cols=26 Identities=35% Similarity=0.676 Sum_probs=20.5
Q ss_pred cccCcccccccCcccCCCCc--ceeecc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE--VFKIEE 181 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~--~F~~e~ 181 (272)
..++...|++|+.|..+||. .+.+..
T Consensus 372 ~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~ 399 (420)
T PRK08318 372 PEVIEEECVGCNLCAHVCPVEGCITMGE 399 (420)
T ss_pred EEechhhCcccchHHhhCCCCCCEEEec
Confidence 45788999999999999996 445543
No 244
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=30.00 E-value=22 Score=32.60 Aligned_cols=18 Identities=39% Similarity=0.839 Sum_probs=15.4
Q ss_pred cCcccccccCcccCCCCc
Q 024095 158 VDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~ 175 (272)
+|...|.+|+.|..+||.
T Consensus 286 ~d~~~C~gCg~C~~~CP~ 303 (312)
T PRK14028 286 FDYQYCKGCGVCAEVCPT 303 (312)
T ss_pred CCcccCcCcCchhhhCCH
Confidence 456779999999999993
No 245
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=29.74 E-value=12 Score=32.88 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=22.6
Q ss_pred cccCcccccccCcccCCCCcceeeccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEVFKIEED 182 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~F~~e~d 182 (272)
..++...|++|+.|...||..|..+++
T Consensus 198 ~~i~~~~C~~C~~C~~~CP~~~~~~~~ 224 (228)
T TIGR03294 198 PNVNRDRCIKCGACYVQCPRAFWPEYE 224 (228)
T ss_pred EEEChhhccCHHHHHHHcCCCCcchhh
Confidence 457888899999999999998877653
No 246
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=28.85 E-value=16 Score=31.20 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=33.1
Q ss_pred ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.|-+..|.||+.|..-|| +..+|..... ..+.-....++||+.+|+-.+.
T Consensus 141 tv~~dlCTGC~lCva~CPtdci~m~~~~~---------~~~~~kw~~~~~~v~~~~~~~~ 191 (198)
T COG2878 141 TVIADLCTGCDLCVAPCPTDCIEMQPVAE---------TPDRWKWDLDTIPVIAIPARER 191 (198)
T ss_pred HHHHHHhcCCCcccCCCCCCceeeeeccc---------chhhccccccccccccchhHHH
Confidence 455677999999999998 5555654211 1334446677888888775443
No 247
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=28.17 E-value=42 Score=29.93 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=19.7
Q ss_pred ccCcccccccCcccCCCC-cceeeccc
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEED 182 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~d 182 (272)
..+...|++|+.|...|| +...+..+
T Consensus 195 v~~~~~C~~C~~C~~~Cp~~AI~~~~~ 221 (259)
T cd07030 195 VEDLEDCSLCKLCERACDAGAIRVGWD 221 (259)
T ss_pred EeChhhCcCchHHHHhCCCCcEEEEec
Confidence 356778999999999999 55555543
No 248
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=27.59 E-value=26 Score=30.45 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=18.2
Q ss_pred HHhCcccccccccchhhhhHHHHHhhhhhh
Q 024095 202 IESCPVDCIHRTSAQQLSLLEDEMRRVERV 231 (272)
Q Consensus 202 v~~CP~~aI~~~~~~~l~~le~~~~~~~~~ 231 (272)
++.||.+|+.+.... -..|+.+....+.
T Consensus 4 ~~~C~~~a~~~~g~~--~t~eel~~~~~~~ 31 (213)
T PRK10076 4 ADECPSGAFERIGRD--ITLDALEREVMKD 31 (213)
T ss_pred hhhchhhHHHhcCcc--cCHHHHHHHHHhh
Confidence 678999999988543 2345555554443
No 249
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=27.56 E-value=21 Score=32.18 Aligned_cols=21 Identities=19% Similarity=0.732 Sum_probs=17.9
Q ss_pred ccccCcccccccCcccCCCCc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~ 175 (272)
...++...|++|+.|..+||.
T Consensus 76 ~~~~~~~~C~~Cg~C~~~CP~ 96 (295)
T TIGR02494 76 RIIIRREKCTHCGKCTEACPS 96 (295)
T ss_pred ceeechhhcCchhHhhccCcH
Confidence 456788899999999999983
No 250
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=26.76 E-value=30 Score=32.38 Aligned_cols=23 Identities=35% Similarity=0.937 Sum_probs=18.4
Q ss_pred cccccccCcccCCCCcc--eeeccc
Q 024095 160 EFSCIGCKNCNNVAPEV--FKIEED 182 (272)
Q Consensus 160 e~~CigC~~C~~~ap~~--F~~e~d 182 (272)
...|++||.|..+||.- |.|.|.
T Consensus 219 ~~rCi~C~~C~~~CPtC~Cf~i~D~ 243 (334)
T TIGR02910 219 DSRCIACGRCNTVCPTCTCFSMQDV 243 (334)
T ss_pred HhhCCcCccccccCCceEeeEEEEe
Confidence 35799999999999954 777654
No 251
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=26.74 E-value=8.4 Score=25.50 Aligned_cols=15 Identities=40% Similarity=0.986 Sum_probs=10.1
Q ss_pred ccccccCcccCCCCc
Q 024095 161 FSCIGCKNCNNVAPE 175 (272)
Q Consensus 161 ~~CigC~~C~~~ap~ 175 (272)
..|++||.|..++|-
T Consensus 3 ~~Ci~Cg~C~~~CP~ 17 (57)
T PF13183_consen 3 SKCIRCGACTSVCPV 17 (57)
T ss_dssp HC--S-SHHHHCSHH
T ss_pred HHccCccChHHHChh
Confidence 469999999999983
No 252
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=26.60 E-value=75 Score=18.46 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHhCC
Q 024095 84 PEQIKKAYYNCMKACHP 100 (272)
Q Consensus 84 ~~~Ik~ayr~l~~~~HP 100 (272)
.++.|.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 47788999999999983
No 253
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=26.31 E-value=31 Score=30.93 Aligned_cols=18 Identities=39% Similarity=0.935 Sum_probs=15.2
Q ss_pred CcccccccCcccCCCCcc
Q 024095 159 DEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~ 176 (272)
+...||.||.|...||..
T Consensus 155 ~~~~CI~CG~C~saCP~~ 172 (250)
T PRK07570 155 DAAACIGCGACVAACPNG 172 (250)
T ss_pred CccccCCCcccccccCCc
Confidence 345699999999999975
No 254
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=25.54 E-value=33 Score=27.65 Aligned_cols=14 Identities=29% Similarity=0.987 Sum_probs=12.9
Q ss_pred cccccCcccCCCCc
Q 024095 162 SCIGCKNCNNVAPE 175 (272)
Q Consensus 162 ~CigC~~C~~~ap~ 175 (272)
.|+.||.|..+||.
T Consensus 3 ~Ci~CG~C~~~CP~ 16 (144)
T TIGR03290 3 ACYQCGTCTGSCPS 16 (144)
T ss_pred cccCCCCCcCcCCC
Confidence 59999999999995
No 255
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=24.47 E-value=34 Score=32.19 Aligned_cols=16 Identities=44% Similarity=0.997 Sum_probs=14.4
Q ss_pred cccccCcccCCCCcce
Q 024095 162 SCIGCKNCNNVAPEVF 177 (272)
Q Consensus 162 ~CigC~~C~~~ap~~F 177 (272)
.||+|+.|..+||.-|
T Consensus 227 rCi~Cg~C~~~CPtC~ 242 (344)
T PRK15055 227 RCIACGRCNFVCPTCT 242 (344)
T ss_pred hCccCccccccCCceE
Confidence 7999999999999753
No 256
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=24.40 E-value=33 Score=34.56 Aligned_cols=44 Identities=25% Similarity=0.421 Sum_probs=30.2
Q ss_pred ccccccCcccCCCCcceeecccccceEEccCCCCHH----------HHHHHHHhCccc
Q 024095 161 FSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINE----------FVQQAIESCPVD 208 (272)
Q Consensus 161 ~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~g~~e----------~i~~Av~~CP~~ 208 (272)
..|..||.|..+||+.+.+.+..+.+. .||.. -+..+-+.||.+
T Consensus 400 ~kc~~cG~C~~~CP~~l~i~eam~~A~----~Gd~~~l~~l~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 400 RKCTYCGNCMRACPNELDIPEAMEYAA----KGDFSKLEDLHDVCIGCGRCEQVCPKN 453 (772)
T ss_pred HhcccccchhccCCcccchHHHHHHhh----cCChHHHHHHHHHhhhhhhhhhhCccc
Confidence 569999999999999999876444433 34432 233566788853
No 257
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=24.22 E-value=29 Score=30.78 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=16.9
Q ss_pred cccccccCcccCCCCcceeeccccc
Q 024095 160 EFSCIGCKNCNNVAPEVFKIEEDFG 184 (272)
Q Consensus 160 e~~CigC~~C~~~ap~~F~~e~d~g 184 (272)
...||.||.|..+||. +..+++|.
T Consensus 148 ~~~CI~Cg~C~saCP~-~~~~~~f~ 171 (239)
T PRK13552 148 LDRCIECGCCVAACGT-KQMREDFV 171 (239)
T ss_pred hhhccccchhHhhCCC-CccCCCcc
Confidence 3459999999999994 34444443
No 258
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=24.12 E-value=35 Score=31.81 Aligned_cols=20 Identities=30% Similarity=0.690 Sum_probs=16.9
Q ss_pred cCcccccccCcccCCCCcce
Q 024095 158 VDEFSCIGCKNCNNVAPEVF 177 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~~F 177 (272)
+|...|++|+.|..+||...
T Consensus 50 ~d~~~C~~Cg~C~~vCP~~~ 69 (341)
T PRK09326 50 AAPNVCEGCLTCSRICPVVD 69 (341)
T ss_pred CCcCcCcCcCchhhhCCCCc
Confidence 46678999999999999653
No 259
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.63 E-value=1.7e+02 Score=24.78 Aligned_cols=43 Identities=30% Similarity=0.462 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHH-----------HHHHhCCCCCCC-----------------------chHHHHHHHHHHHHHH
Q 024095 79 LPDATPEQIKKAYYN-----------CMKACHPDLSGD-----------------------DPETTNFCMFINEVYA 121 (272)
Q Consensus 79 ~~~a~~~~Ik~ayr~-----------l~~~~HPD~~~~-----------------------~~~~~~~f~~i~~Ay~ 121 (272)
.+.++.+++..|... -.++-|||..+. .++..+.|..||++|.
T Consensus 41 ~pf~s~~~l~~am~~~v~~A~~~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~ 117 (176)
T COG3195 41 RPFASAEGLHAAMCRAVRAASEEERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV 117 (176)
T ss_pred CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH
Confidence 566777777776643 245579997532 2334677888888884
No 260
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=23.24 E-value=3e+02 Score=20.08 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=27.1
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD 105 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~ 105 (272)
+|--.+.|+.|-++.+||..|-.+.++|..=-..+.
T Consensus 3 RnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps 38 (78)
T PF10041_consen 3 RNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPS 38 (78)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc
Confidence 344566788999999999999988888875444433
No 261
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=23.08 E-value=35 Score=32.07 Aligned_cols=22 Identities=27% Similarity=0.827 Sum_probs=17.1
Q ss_pred CcccccccCcccCCCCcceeec
Q 024095 159 DEFSCIGCKNCNNVAPEVFKIE 180 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~F~~e 180 (272)
....|+|||.|..+||....+.
T Consensus 305 g~~~CvgCGrC~~~CP~~I~i~ 326 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEYISFS 326 (344)
T ss_pred chhhCcCcCccccccCCCCCHH
Confidence 3456999999999999764443
No 262
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=23.01 E-value=41 Score=32.79 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=18.8
Q ss_pred CcCCcccccCcCCCCCHHHHHHHH
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAY 91 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ay 91 (272)
...+.|-|+.+..+...+|..+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ 97 (444)
T PLN00112 74 TKKECYGVFCLTYDLKAEEETKSW 97 (444)
T ss_pred cCCCceEEEEEEEecccchhhhcC
Confidence 456899999999999888855443
No 263
>PRK13409 putative ATPase RIL; Provisional
Probab=22.96 E-value=37 Score=34.22 Aligned_cols=58 Identities=26% Similarity=0.477 Sum_probs=32.4
Q ss_pred ccCcccccc--cC-cccCCCCcc------eeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 157 FVDEFSCIG--CK-NCNNVAPEV------FKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~Cig--C~-~C~~~ap~~------F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
.||.+.|.- |+ .|...||-+ ..++++.+++... + .-+.-+--||.-||-+||.++.-+
T Consensus 6 ~~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~~~~~~~-e-~~c~~c~~c~~~cp~~a~~i~~~p 72 (590)
T PRK13409 6 VVDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDDGKPVIS-E-ELCIGCGICVKKCPFDAISIVNLP 72 (590)
T ss_pred EeeccccCcchhhhhHHhhCCCcccCCeEEEEcCCCCCceee-H-hhccccccccccCCcceEEEeeCc
Confidence 456666632 43 566666633 3443332433221 1 111124489999999999998765
No 264
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=22.71 E-value=31 Score=32.91 Aligned_cols=24 Identities=25% Similarity=0.657 Sum_probs=18.1
Q ss_pred ccCcccccccCcccCCCCcceeec
Q 024095 157 FVDEFSCIGCKNCNNVAPEVFKIE 180 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~~F~~e 180 (272)
..+-.+||||.+|.-.|-+++.-.
T Consensus 10 vmnLDKCIGCHTCSvTCKnvWTnR 33 (513)
T COG1140 10 VLNLDKCIGCHTCSVTCKNVWTNR 33 (513)
T ss_pred hhcccccccccccceeecccccCC
Confidence 445678999999988887775443
No 265
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=22.70 E-value=27 Score=31.22 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=16.9
Q ss_pred cccCcccccccCcccCCCCc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~ 175 (272)
..++...|+.|+.|...||.
T Consensus 229 ~~i~~~~C~~Cg~Cv~~CP~ 248 (255)
T TIGR02163 229 TLVLSGDCTLCGRCIDVCHE 248 (255)
T ss_pred eEeccccccchhHHHHhCCc
Confidence 35677889999999999994
No 266
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=22.60 E-value=36 Score=31.91 Aligned_cols=22 Identities=27% Similarity=0.904 Sum_probs=17.7
Q ss_pred CcccccccCcccCCCCcceeec
Q 024095 159 DEFSCIGCKNCNNVAPEVFKIE 180 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~F~~e 180 (272)
+...|+|||.|...||....+.
T Consensus 299 G~~~CvgCGrC~~~CP~~idi~ 320 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEYISFS 320 (334)
T ss_pred CccccCCcCchhhhCCCCCCHH
Confidence 4667999999999999765554
No 267
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=22.56 E-value=47 Score=30.77 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=18.3
Q ss_pred HHHHHHHHHhCcccccccccch
Q 024095 195 NEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 195 ~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
+..+..+++.||++||.....+
T Consensus 207 C~~C~~C~~~CP~~Ai~~~~~p 228 (314)
T TIGR02486 207 CETCGKCADECPSGAISKGGEP 228 (314)
T ss_pred CcchhHHHhhCCccccCCCCCC
Confidence 4678899999999999987554
No 268
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=22.07 E-value=35 Score=32.99 Aligned_cols=19 Identities=37% Similarity=0.737 Sum_probs=15.8
Q ss_pred cCcccccccCcccCCCCcc
Q 024095 158 VDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~~ 176 (272)
.+...|++|+.|..+||..
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~ 378 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMN 378 (435)
T ss_pred ccCCcCcCccchhhhCccc
Confidence 3557899999999999843
No 269
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=21.79 E-value=40 Score=30.60 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.3
Q ss_pred CcccccccCcccCCCCcc
Q 024095 159 DEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~ 176 (272)
+...||.||.|...||..
T Consensus 150 ~~~~CI~CG~C~~~CP~~ 167 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVV 167 (279)
T ss_pred cchhCcccCcccccCCCc
Confidence 456799999999999964
No 270
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=21.03 E-value=39 Score=29.33 Aligned_cols=18 Identities=28% Similarity=0.623 Sum_probs=15.2
Q ss_pred CcccccccCcccCCCCcc
Q 024095 159 DEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~ 176 (272)
+...||.||.|..+||..
T Consensus 136 ~~~~Ci~CG~C~~~CP~~ 153 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAF 153 (220)
T ss_pred hhhhccccccccccCCCC
Confidence 346799999999999965
No 271
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=21.03 E-value=31 Score=33.39 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=17.1
Q ss_pred CcccccccCcccCCCCcceeecc
Q 024095 159 DEFSCIGCKNCNNVAPEVFKIEE 181 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~F~~e~ 181 (272)
....||.||.|..+||-.=.+..
T Consensus 306 e~L~CIRCGaC~n~CPvY~~iGg 328 (459)
T COG1139 306 EALRCIRCGACLNHCPVYRHIGG 328 (459)
T ss_pred HHHHhhcchHhhhcChhhhhccC
Confidence 34579999999999985544443
No 272
>COG2879 Uncharacterized small protein [Function unknown]
Probab=20.68 E-value=1.7e+02 Score=20.58 Aligned_cols=27 Identities=22% Similarity=0.293 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCCCCCchHHHHHHHHHHH
Q 024095 90 AYYNCMKACHPDLSGDDPETTNFCMFINE 118 (272)
Q Consensus 90 ayr~l~~~~HPD~~~~~~~~~~~f~~i~~ 118 (272)
.|-.-+++.|||+.+-. -.|+|..-++
T Consensus 27 nYVehmr~~hPd~p~mT--~~EFfrec~d 53 (65)
T COG2879 27 NYVEHMRKKHPDKPPMT--YEEFFRECQD 53 (65)
T ss_pred HHHHHHHHhCcCCCccc--HHHHHHHHHH
Confidence 46677889999997652 3556654443
No 273
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=20.45 E-value=33 Score=32.84 Aligned_cols=25 Identities=24% Similarity=0.779 Sum_probs=19.9
Q ss_pred ccCcccccccCcccCCCC-cceeecc
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEE 181 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~ 181 (272)
.+|...|++|+.|..+|| ..+.++.
T Consensus 326 ~Id~~~Ci~CGaCV~aCP~~AI~~~~ 351 (391)
T TIGR03287 326 TLNTEDCFGCGYCAEICPGGAFEVNL 351 (391)
T ss_pred eeChHhCcChHHHHhhCCccceEEeC
Confidence 467888999999999999 4566653
No 274
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=20.16 E-value=47 Score=31.95 Aligned_cols=18 Identities=17% Similarity=0.523 Sum_probs=15.2
Q ss_pred HHHHHHhCcccccccccc
Q 024095 198 VQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 198 i~~Av~~CP~~aI~~~~~ 215 (272)
+.++++.||+.||.|+..
T Consensus 247 ~~~~v~~Cp~~ai~~~~~ 264 (402)
T TIGR02064 247 ENEVVNRCPTKAISWDGS 264 (402)
T ss_pred chhHhhcCCccccccCCC
Confidence 456899999999999864
No 275
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=20.05 E-value=36 Score=33.32 Aligned_cols=19 Identities=42% Similarity=0.955 Sum_probs=16.6
Q ss_pred cccCcccccccCcccCCCC
Q 024095 156 VFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap 174 (272)
.++.+..|||||.|+..||
T Consensus 45 ~~ise~lCigcgicvkkcp 63 (592)
T KOG0063|consen 45 AFISEELCIGCGICVKKCP 63 (592)
T ss_pred chhhHhhhccccceeeccC
Confidence 4667888999999999998
No 276
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=20.02 E-value=81 Score=28.06 Aligned_cols=17 Identities=35% Similarity=0.993 Sum_probs=14.5
Q ss_pred ccccccCcccCCCCcce
Q 024095 161 FSCIGCKNCNNVAPEVF 177 (272)
Q Consensus 161 ~~CigC~~C~~~ap~~F 177 (272)
+.|..|++|..+||..-
T Consensus 198 ~~C~~~~~C~~vCPK~i 214 (234)
T COG0479 198 WRCTTCGNCTEVCPKGI 214 (234)
T ss_pred ecccccccccccCCCCC
Confidence 45999999999999763
Done!