Query 024095
Match_columns 272
No_of_seqs 418 out of 2819
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 18:08:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dn9_A DNAJ homolog subfamily 99.8 1.1E-21 3.7E-26 144.0 6.8 71 67-137 4-74 (79)
2 1hdj_A Human HSP40, HDJ-1; mol 99.8 4.8E-21 1.6E-25 139.9 6.6 68 69-137 2-69 (77)
3 2ctp_A DNAJ homolog subfamily 99.8 4.4E-21 1.5E-25 140.5 6.4 70 67-137 4-73 (78)
4 2ej7_A HCG3 gene; HCG3 protein 99.8 6.2E-21 2.1E-25 141.0 7.2 71 67-137 6-77 (82)
5 2yua_A Williams-beuren syndrom 99.8 5.8E-21 2E-25 146.2 6.7 72 65-136 12-83 (99)
6 2ctr_A DNAJ homolog subfamily 99.8 1.1E-20 3.9E-25 141.5 6.9 70 67-137 4-73 (88)
7 2cug_A Mkiaa0962 protein; DNAJ 99.8 9.9E-21 3.4E-25 141.9 6.2 70 67-137 14-83 (88)
8 2och_A Hypothetical protein DN 99.8 9.6E-21 3.3E-25 137.0 5.8 67 68-137 6-72 (73)
9 2ctq_A DNAJ homolog subfamily 99.8 1.1E-20 3.9E-25 147.7 5.8 71 67-137 17-87 (112)
10 2ctw_A DNAJ homolog subfamily 99.8 2.4E-20 8.2E-25 145.2 7.6 71 67-137 14-84 (109)
11 1wjz_A 1700030A21RIK protein; 99.8 1.6E-20 5.4E-25 142.2 6.1 71 66-136 12-88 (94)
12 2dmx_A DNAJ homolog subfamily 99.8 3.6E-20 1.2E-24 139.8 7.3 71 67-137 6-77 (92)
13 2l6l_A DNAJ homolog subfamily 99.8 1.4E-20 4.9E-25 155.2 5.4 71 67-137 7-83 (155)
14 2o37_A Protein SIS1; HSP40, J- 99.8 2.8E-20 9.6E-25 140.5 5.4 69 67-138 5-73 (92)
15 1bq0_A DNAJ, HSP40; chaperone, 99.8 1.2E-20 4.2E-25 145.4 3.1 69 69-137 2-70 (103)
16 2lgw_A DNAJ homolog subfamily 99.8 5.3E-20 1.8E-24 140.9 5.9 68 70-137 2-70 (99)
17 2qsa_A DNAJ homolog DNJ-2; J-d 99.8 1.9E-19 6.3E-24 140.1 3.8 70 68-137 13-86 (109)
18 2ys8_A RAB-related GTP-binding 99.7 1E-18 3.5E-23 131.4 5.5 63 68-131 25-87 (90)
19 3apq_A DNAJ homolog subfamily 99.7 9.1E-19 3.1E-23 149.9 4.9 68 70-137 2-69 (210)
20 2pf4_E Small T antigen; PP2A, 99.7 4E-19 1.4E-23 148.6 1.3 66 68-137 9-76 (174)
21 1gh6_A Large T antigen; tumor 99.7 1E-18 3.4E-23 137.0 1.4 66 68-137 6-73 (114)
22 1iur_A KIAA0730 protein; DNAJ 99.7 4.9E-18 1.7E-22 127.1 3.6 69 64-132 10-79 (88)
23 3bvo_A CO-chaperone protein HS 99.7 2.6E-17 9.1E-22 141.7 7.4 81 55-135 28-115 (207)
24 3lz8_A Putative chaperone DNAJ 99.7 1.8E-18 6.2E-23 158.8 0.0 70 66-136 24-93 (329)
25 3hho_A CO-chaperone protein HS 99.7 1.1E-17 3.9E-22 140.4 4.8 67 69-135 3-76 (174)
26 1faf_A Large T antigen; J doma 99.7 9.8E-18 3.4E-22 123.1 3.3 62 68-133 9-72 (79)
27 1fpo_A HSC20, chaperone protei 99.7 2.5E-17 8.7E-22 137.9 3.9 65 71-135 2-73 (171)
28 1n4c_A Auxilin; four helix bun 99.7 3.1E-17 1.1E-21 137.9 4.0 65 68-132 115-182 (182)
29 2guz_A Mitochondrial import in 99.7 5.2E-17 1.8E-21 116.8 4.1 61 66-130 10-71 (71)
30 2qwo_B Putative tyrosine-prote 99.6 1.3E-16 4.5E-21 120.0 2.8 56 70-125 33-91 (92)
31 3ag7_A Putative uncharacterize 99.6 2.7E-16 9.3E-21 121.6 3.0 61 67-128 38-105 (106)
32 3uo3_A J-type CO-chaperone JAC 99.6 2.5E-16 8.6E-21 132.9 3.0 66 67-135 8-80 (181)
33 3apo_A DNAJ homolog subfamily 99.5 4.3E-16 1.5E-20 157.1 0.0 71 67-137 18-88 (780)
34 2guz_B Mitochondrial import in 99.0 1.9E-10 6.6E-15 80.7 4.7 52 70-125 4-58 (65)
35 2y4t_A DNAJ homolog subfamily 99.0 4.5E-10 1.5E-14 103.0 5.6 66 69-134 381-449 (450)
36 1iqz_A Ferredoxin; iron-sulfer 98.6 1.3E-08 4.3E-13 73.8 2.4 60 155-215 3-71 (81)
37 1dax_A Ferredoxin I; electron 98.4 1.3E-07 4.3E-12 65.1 3.4 60 155-214 3-63 (64)
38 1rof_A Ferredoxin; electron tr 98.3 2.8E-07 9.7E-12 62.0 2.8 58 156-214 3-60 (60)
39 1sj1_A Ferredoxin; thermostabi 98.3 2.3E-07 7.8E-12 63.8 1.8 59 155-214 3-65 (66)
40 1f2g_A Ferredoxin II; electron 98.2 5.2E-07 1.8E-11 60.6 2.6 56 156-213 2-58 (58)
41 1dwl_A Ferredoxin I; electron 98.1 5.4E-07 1.8E-11 60.4 1.3 57 156-213 2-59 (59)
42 3eun_A Ferredoxin; electron tr 97.3 9.5E-05 3.2E-09 53.2 2.0 55 157-215 2-63 (82)
43 1rgv_A Ferredoxin; electron tr 97.2 0.00016 5.3E-09 51.6 2.8 56 157-216 2-64 (80)
44 2fgo_A Ferredoxin; allochromat 97.2 0.00021 7.1E-09 51.2 2.9 56 157-216 2-64 (82)
45 1xer_A Ferredoxin; electron tr 97.1 3.3E-05 1.1E-09 57.8 -1.8 60 155-214 37-102 (103)
46 1jb0_C Photosystem I iron-sulf 97.0 4.6E-05 1.6E-09 54.1 -2.3 60 156-215 3-67 (80)
47 3gyx_B Adenylylsulfate reducta 96.8 0.00012 4.1E-09 60.3 -1.2 63 156-219 2-70 (166)
48 1kqf_B FDH-N beta S, formate d 96.8 0.00038 1.3E-08 62.4 1.8 68 154-221 124-195 (294)
49 1jnr_B Adenylylsulfate reducta 96.7 0.00012 4.2E-09 59.2 -1.6 65 156-221 3-73 (150)
50 2zvs_A Uncharacterized ferredo 96.7 0.00051 1.7E-08 49.6 1.8 55 157-215 2-64 (85)
51 1bc6_A 7-Fe ferredoxin; electr 96.4 0.0046 1.6E-07 43.4 4.9 56 157-216 2-60 (77)
52 1h98_A Ferredoxin; electron tr 96.2 0.0026 9E-08 44.9 2.8 55 157-215 2-59 (78)
53 1ti6_B Pyrogallol hydroxytrans 96.1 0.0021 7.3E-08 57.0 2.1 62 154-218 90-162 (274)
54 7fd1_A FD1, protein (7-Fe ferr 96.0 0.0031 1E-07 47.3 2.4 55 157-215 2-59 (106)
55 3i9v_9 NADH-quinone oxidoreduc 95.9 0.00071 2.4E-08 55.5 -1.6 56 159-215 49-118 (182)
56 2fdn_A Ferredoxin; electron tr 95.9 0.0073 2.5E-07 39.4 3.6 49 160-212 5-54 (55)
57 2vpz_B NRFC protein; oxidoredu 95.5 0.0065 2.2E-07 51.0 2.9 59 154-216 81-146 (195)
58 1gte_A Dihydropyrimidine dehyd 95.4 0.0012 4E-08 68.7 -2.6 60 154-216 944-1008(1025)
59 1h0h_B Formate dehydrogenase ( 95.3 0.0029 9.9E-08 54.0 0.0 65 154-221 99-172 (214)
60 2ivf_B Ethylbenzene dehydrogen 95.3 0.0055 1.9E-07 56.2 1.7 62 154-217 175-242 (352)
61 2v2k_A Ferredoxin; iron, trans 95.2 0.0012 4E-08 49.5 -2.4 56 157-216 2-60 (105)
62 1hfe_L Protein (Fe-only hydrog 95.0 0.0011 3.8E-08 62.3 -3.8 59 155-215 27-87 (421)
63 3c8y_A Iron hydrogenase 1; dit 94.5 0.0028 9.6E-08 61.8 -2.5 62 154-215 138-210 (574)
64 3i9v_3 NADH-quinone oxidoreduc 94.1 0.0049 1.7E-07 62.3 -2.0 61 155-215 173-240 (783)
65 1q16_B Respiratory nitrate red 92.4 0.036 1.2E-06 53.2 1.2 58 154-213 208-271 (512)
66 2c42_A Pyruvate-ferredoxin oxi 90.8 0.036 1.2E-06 58.7 -0.8 62 156-217 681-768 (1231)
67 2vpz_B NRFC protein; oxidoredu 88.4 0.47 1.6E-05 39.4 4.5 58 155-215 50-110 (195)
68 2pzi_A Probable serine/threoni 87.4 0.36 1.2E-05 47.3 3.7 46 69-122 628-675 (681)
69 2ivf_B Ethylbenzene dehydrogen 86.4 0.26 8.8E-06 45.1 1.9 59 155-215 143-204 (352)
70 2gmh_A Electron transfer flavo 85.4 0.099 3.4E-06 50.7 -1.6 56 159-215 508-573 (584)
71 1q16_B Respiratory nitrate red 84.5 0.11 3.8E-06 49.8 -1.6 59 155-215 176-237 (512)
72 1h0h_B Formate dehydrogenase ( 76.3 0.54 1.8E-05 39.7 0.0 56 157-214 66-129 (214)
73 1ti6_B Pyrogallol hydroxytrans 72.0 0.61 2.1E-05 41.0 -0.7 56 156-214 61-118 (274)
74 1kqf_B FDH-N beta S, formate d 71.0 1.4 4.7E-05 39.0 1.4 56 156-214 93-152 (294)
75 7fd1_A FD1, protein (7-Fe ferr 70.0 1.9 6.6E-05 31.5 1.8 27 155-181 31-58 (106)
76 3mm5_B Sulfite reductase, diss 65.5 2.8 9.5E-05 38.2 2.3 54 157-212 201-258 (366)
77 3mm5_A Sulfite reductase, diss 56.6 2.7 9.2E-05 39.2 0.5 22 155-176 278-299 (418)
78 3or1_B Sulfite reductase beta; 55.8 2.6 8.9E-05 38.8 0.2 16 197-212 260-275 (386)
79 2v2k_A Ferredoxin; iron, trans 54.6 3.7 0.00013 29.8 0.9 59 156-216 32-91 (105)
80 3j16_B RLI1P; ribosome recycli 52.4 2.3 8E-05 41.5 -0.7 22 153-174 45-66 (608)
81 3i9v_9 NADH-quinone oxidoreduc 50.0 3.2 0.00011 33.1 -0.1 25 157-181 92-117 (182)
82 3mm5_B Sulfite reductase, diss 47.3 3 0.0001 38.0 -0.8 23 153-175 231-253 (366)
83 2pa8_D DNA-directed RNA polyme 45.9 4.4 0.00015 35.1 0.1 83 164-264 174-258 (265)
84 3or1_B Sulfite reductase beta; 40.6 4.5 0.00015 37.1 -0.8 17 198-214 224-240 (386)
85 3or1_A Sulfite reductase alpha 39.9 6.7 0.00023 36.7 0.3 23 154-176 294-316 (437)
86 1jnr_B Adenylylsulfate reducta 39.1 5 0.00017 31.6 -0.6 25 156-180 40-65 (150)
87 2c42_A Pyruvate-ferredoxin oxi 37.5 5.4 0.00019 42.2 -0.8 20 156-175 737-756 (1231)
88 3gyx_B Adenylylsulfate reducta 35.0 6.4 0.00022 31.5 -0.6 21 156-176 39-59 (166)
89 1hfe_L Protein (Fe-only hydrog 35.0 12 0.00041 34.6 1.1 18 159-176 62-79 (421)
90 2pa8_D DNA-directed RNA polyme 34.8 10 0.00035 32.7 0.7 27 156-182 196-222 (265)
91 1qqr_A Streptokinase domain B; 31.5 25 0.00084 27.4 2.2 32 71-102 33-64 (138)
92 2wdq_B Succinate dehydrogenase 31.2 13 0.00044 31.2 0.6 21 156-176 142-162 (238)
93 2h88_B Succinate dehydrogenase 30.4 13 0.00046 31.6 0.6 19 158-176 153-171 (252)
94 3cf4_A Acetyl-COA decarboxylas 29.6 0.96 3.3E-05 45.8 -7.8 56 157-212 411-472 (807)
95 3bk7_A ABC transporter ATP-bin 25.4 11 0.00039 36.5 -0.8 21 154-174 60-80 (607)
96 2gmh_A Electron transfer flavo 24.7 12 0.00041 35.9 -0.8 21 155-175 545-565 (584)
97 1kf6_B Fumarate reductase iron 24.4 10 0.00035 32.0 -1.3 21 156-176 141-161 (243)
98 3vr8_B Iron-sulfur subunit of 22.4 25 0.00084 30.8 0.8 17 161-177 180-196 (282)
99 3c8y_A Iron hydrogenase 1; dit 22.0 15 0.00052 35.3 -0.7 21 156-176 183-203 (574)
100 2b7e_A PRE-mRNA processing pro 20.8 98 0.0034 20.4 3.4 48 85-135 3-55 (59)
No 1
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=144.02 Aligned_cols=71 Identities=41% Similarity=0.677 Sum_probs=66.8
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||++||++++++|||+++.++++.+.|+.|++||++|+||.+|..||.++.
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 74 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGS 74 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccC
Confidence 45679999999999999999999999999999999998777889999999999999999999999999754
No 2
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.83 E-value=4.8e-21 Score=139.95 Aligned_cols=68 Identities=38% Similarity=0.596 Sum_probs=63.8
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++++.++||+||+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 69 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKE-PGAEEKFKEIAEAYDVLSDPRKREIFDRYGE 69 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCC-TTHHHHHHHHHHHHHHTTCHHHHHHHHHTCG
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHHcc
Confidence 4699999999999999999999999999999999986 5688999999999999999999999999754
No 3
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.4e-21 Score=140.50 Aligned_cols=70 Identities=37% Similarity=0.581 Sum_probs=65.5
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+||+++++++|||+++. +.+.+.|+.|++||++|+||.+|..||.++.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 73 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHA-PGATEAFKAIGTAYAVLSNPEKRKQYDQFGS 73 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSS-HHHHHHHHHHHHHHHHHTSHHHHHHHHHTCS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 456799999999999999999999999999999999986 6788999999999999999999999999754
No 4
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.2e-21 Score=140.95 Aligned_cols=71 Identities=35% Similarity=0.483 Sum_probs=65.2
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+||+++++++|||+++... .+++.|+.|++||++|+||.+|..||.++.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 77 (82)
T 2ej7_A 6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGS 77 (82)
T ss_dssp SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCC
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCc
Confidence 45679999999999999999999999999999999998753 578899999999999999999999999753
No 5
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.8e-21 Score=146.24 Aligned_cols=72 Identities=31% Similarity=0.393 Sum_probs=67.2
Q ss_pred CCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 65 TDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 65 ~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
..+...|||+||||+++++.++||+|||+|++++|||+++.++++.+.|++|++||+||+||.+|..||...
T Consensus 12 ~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 12 CSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp CSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 346778999999999999999999999999999999999877888999999999999999999999999854
No 6
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=141.54 Aligned_cols=70 Identities=33% Similarity=0.497 Sum_probs=65.5
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||+|++++|||+++. +++.+.|+.|++||++|+||.+|..||.++.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 73 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKS-PDAEAKFREIAEAYETLSDANRRKEYDTLGH 73 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCS-HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 456799999999999999999999999999999999985 7789999999999999999999999999763
No 7
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=9.9e-21 Score=141.86 Aligned_cols=70 Identities=34% Similarity=0.521 Sum_probs=65.2
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||++++++|||+++. +.+++.|++|++||++|+||.+|..||.++.
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 83 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKD-PGAEDRFIQISKAYEILSNEEKRTNYDHYGS 83 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCS-TTHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-hhHHHHHHHHHHHHHHHCCHHHHHHHHHcCC
Confidence 356799999999999999999999999999999999987 6688999999999999999999999999754
No 8
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.82 E-value=9.6e-21 Score=136.99 Aligned_cols=67 Identities=37% Similarity=0.569 Sum_probs=61.8
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...|||+||||+++++.++||++|+++++++|||++++ ..+.|+.|++||++|+||.+|..||.+|.
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~---~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPD---GAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTT---CHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcC---HHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 56799999999999999999999999999999999976 36789999999999999999999999753
No 9
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-20 Score=147.74 Aligned_cols=71 Identities=24% Similarity=0.400 Sum_probs=66.7
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||+|++++|||++++++++++.|++|++||++|+||.+|..||.++.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~ 87 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRR 87 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhh
Confidence 45689999999999999999999999999999999999777899999999999999999999999999754
No 10
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=2.4e-20 Score=145.24 Aligned_cols=71 Identities=35% Similarity=0.547 Sum_probs=66.8
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||+|++++|||+++.++++.+.|++|++||++|+||.+|..||.++.
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~ 84 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGS 84 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcc
Confidence 35679999999999999999999999999999999999878899999999999999999999999999764
No 11
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.81 E-value=1.6e-20 Score=142.23 Aligned_cols=71 Identities=24% Similarity=0.456 Sum_probs=64.8
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc------hHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD------PETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 66 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~------~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
.....|||+||||+++++.++||+|||+|++++|||+++.+ +.+.+.|+.|++||++|+||.+|..||...
T Consensus 12 ~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 12 QTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred cCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 35678999999999999999999999999999999998742 457899999999999999999999999874
No 12
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.6e-20 Score=139.83 Aligned_cols=71 Identities=38% Similarity=0.588 Sum_probs=65.1
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||+|++++|||+++.. ..+++.|++|++||++|+||.+|..||.++.
T Consensus 6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~ 77 (92)
T 2dmx_A 6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGC 77 (92)
T ss_dssp CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCS
T ss_pred CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 3567999999999999999999999999999999999874 4678899999999999999999999999753
No 13
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=155.21 Aligned_cols=71 Identities=24% Similarity=0.408 Sum_probs=64.4
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP------ETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~------~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++++.++||+|||+|++++|||+++..+ .+.+.|+.|++||++|+||.+|+.||..+.
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~ 83 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRC 83 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 45679999999999999999999999999999999998753 357899999999999999999999998653
No 14
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.8e-20 Score=140.53 Aligned_cols=69 Identities=30% Similarity=0.505 Sum_probs=63.0
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHGY 138 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~~ 138 (272)
....|||+||||+++++.++||+||++|++++|||+++.+ .+.|++|++||++|+||.+|..||.++..
T Consensus 5 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~ 73 (92)
T 2o37_A 5 VKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLE 73 (92)
T ss_dssp CSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCC---HHHHHHHHHHHHHHTSHHHHHHHHHHCHH
T ss_pred ccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCh---HHHHHHHHHHHHHHCCHHHHHHHHHHCHH
Confidence 3567999999999999999999999999999999999763 56899999999999999999999997643
No 15
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.80 E-value=1.2e-20 Score=145.39 Aligned_cols=69 Identities=35% Similarity=0.537 Sum_probs=65.1
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
..|||+||||+++++.++||+|||+|++++|||+++.++++++.|++|++||++|+||.+|..||.++.
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~ 70 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGH 70 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTT
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhh
Confidence 469999999999999999999999999999999998767788999999999999999999999999864
No 16
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-20 Score=140.89 Aligned_cols=68 Identities=32% Similarity=0.468 Sum_probs=63.3
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc-hHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD-PETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~-~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++++.++||+|||++++++|||+++.. ..+++.|+.|++||++|+||.+|..||.++.
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~ 70 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR 70 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCc
Confidence 5899999999999999999999999999999999874 4578899999999999999999999999753
No 17
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.76 E-value=1.9e-19 Score=140.11 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=64.8
Q ss_pred CcCCcccccCcCCCC-CHHHHHHHHHHHHHHhCCCCCCC---chHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 68 IADDYYAVLGLLPDA-TPEQIKKAYYNCMKACHPDLSGD---DPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a-~~~~Ik~ayr~l~~~~HPD~~~~---~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...|||+||||++++ +.++||+|||++++++|||++++ .+.+++.|++|++||++|+||.+|..||.++.
T Consensus 13 ~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 13 GLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp TTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 467999999999999 99999999999999999999986 35678999999999999999999999999764
No 18
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=131.40 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=58.6
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccch
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMV 131 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~ 131 (272)
...|||+||||+++++.++||+|||+|+++||||+++. +.+.+.|++|++||++|+|+.+|..
T Consensus 25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVA-PGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCC-TTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCC-ccHHHHHHHHHHHHHHHCCcccccC
Confidence 35799999999999999999999999999999999976 5688999999999999999999874
No 19
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.74 E-value=9.1e-19 Score=149.90 Aligned_cols=68 Identities=28% Similarity=0.502 Sum_probs=64.9
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
.|||+||||+++|+.++||+|||++++++|||++++++++.+.|+.|++||++|+||.+|+.||.+|.
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~ 69 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 69 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcc
Confidence 58999999999999999999999999999999998778899999999999999999999999999764
No 20
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.73 E-value=4e-19 Score=148.58 Aligned_cols=66 Identities=27% Similarity=0.339 Sum_probs=58.3
Q ss_pred CcCCcccccCcCCCCC--HHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 68 IADDYYAVLGLLPDAT--PEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~--~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...|||+||||+++|+ .++||+|||++++++|||++++ ++.|++|++||++|+||.+|+.||.+|.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~----~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---C----CTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 3468999999999998 6999999999999999999876 4689999999999999999999999885
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.71 E-value=1e-18 Score=136.96 Aligned_cols=66 Identities=27% Similarity=0.344 Sum_probs=60.7
Q ss_pred CcCCcccccCcCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 68 IADDYYAVLGLLPDATP--EQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~--~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
...+||+||||+++++. ++||+|||+|++++|||++++ .+.|++|++||+||+||.+|+.||.++.
T Consensus 6 ~~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~----~e~f~~I~~AYevL~d~~~R~~~~~~~~ 73 (114)
T 1gh6_A 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGG 73 (114)
T ss_dssp HHHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCT----TTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred hhhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCcc----HHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence 34689999999999998 999999999999999999876 5789999999999999999999998754
No 22
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.70 E-value=4.9e-18 Score=127.12 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=60.9
Q ss_pred CCCCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch-HHHHHHHHHHHHHHHhcCccccchh
Q 024095 64 STDAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP-ETTNFCMFINEVYAVLSDPVQRMVY 132 (272)
Q Consensus 64 ~~~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~-~~~~~f~~i~~Ay~vLsd~~~R~~Y 132 (272)
+......++|+||||+++++.++||+|||+|+++||||+++++. .+++.|++|++||++|+|...|..+
T Consensus 10 ~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~~~ 79 (88)
T 1iur_A 10 PRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLDQN 79 (88)
T ss_dssp CSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCSSS
T ss_pred CCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 33456679999999999999999999999999999999998863 5789999999999999998877443
No 23
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.69 E-value=2.6e-17 Score=141.70 Aligned_cols=81 Identities=15% Similarity=0.303 Sum_probs=67.6
Q ss_pred cccccccCCCCCCCcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCcc
Q 024095 55 ARVTAEDSASTDAIADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPV 127 (272)
Q Consensus 55 ~~~~~~~~~~~~~~~~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vLsd~~ 127 (272)
+.|..+....+.....|||+||||+++ ++.++||++||+|++++|||++++.++ +.+.|+.||+||+||+||.
T Consensus 28 ~fC~~c~~~q~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~ 107 (207)
T 3bvo_A 28 FFCPQCRALQAPDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPL 107 (207)
T ss_dssp CBCTTTCCBCCCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHH
T ss_pred cccccccccCCCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 445555544444557899999999986 799999999999999999999986432 4678999999999999999
Q ss_pred ccchhccc
Q 024095 128 QRMVYDEI 135 (272)
Q Consensus 128 ~R~~YD~~ 135 (272)
+|+.||..
T Consensus 108 ~R~~Yd~~ 115 (207)
T 3bvo_A 108 SRGLYLLK 115 (207)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999974
No 24
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.69 E-value=1.8e-18 Score=158.75 Aligned_cols=70 Identities=31% Similarity=0.526 Sum_probs=0.0
Q ss_pred CCCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhcccc
Q 024095 66 DAIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIH 136 (272)
Q Consensus 66 ~~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~ 136 (272)
.+..+|||+||||+++|+.+|||+|||+|+++||||++++ +++++.|++|++||++|+||.+|+.||.++
T Consensus 24 ~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~-~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~ 93 (329)
T 3lz8_A 24 AMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKE-NDAEAKFKDLAEAWEVLKDEQRRAEYDQLW 93 (329)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCC-hHHHHHHHHHHHHHHHhhhhhhhcccchhh
Confidence 3556899999999999999999999999999999999986 578899999999999999999999999974
No 25
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.69 E-value=1.1e-17 Score=140.40 Aligned_cols=67 Identities=25% Similarity=0.381 Sum_probs=61.2
Q ss_pred cCCcccccCcCCCCC--HHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024095 69 ADDYYAVLGLLPDAT--PEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~--~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
..|||+||||+++++ .++||++||++++++|||++++.+. +.+.|..||+||+||+||.+|..||..
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 569999999999987 9999999999999999999887543 668999999999999999999999985
No 26
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.68 E-value=9.8e-18 Score=123.05 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=56.4
Q ss_pred CcCCcccccCcCCC--CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhc
Q 024095 68 IADDYYAVLGLLPD--ATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYD 133 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD 133 (272)
...++|+||||+++ ++.++||+|||+|++++|||++++ .+.|++|++||++|+|+.+|..++
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~----~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC----HHHHHHHHHHHHHHhhHHHHHHHh
Confidence 34589999999999 999999999999999999999865 578999999999999999998743
No 27
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.66 E-value=2.5e-17 Score=137.89 Aligned_cols=65 Identities=20% Similarity=0.385 Sum_probs=60.3
Q ss_pred CcccccCcCCCC--CHHHHHHHHHHHHHHhCCCCCCCchH-----HHHHHHHHHHHHHHhcCccccchhccc
Q 024095 71 DYYAVLGLLPDA--TPEQIKKAYYNCMKACHPDLSGDDPE-----TTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 71 d~Y~vLgv~~~a--~~~~Ik~ayr~l~~~~HPD~~~~~~~-----~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
|||+||||++++ +.++||++||+|+++||||++++.++ +.+.|..||+||+||+||.+|..||..
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 73 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLS 73 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 799999999999 99999999999999999999987543 457999999999999999999999986
No 28
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.66 E-value=3.1e-17 Score=137.94 Aligned_cols=65 Identities=25% Similarity=0.452 Sum_probs=59.9
Q ss_pred CcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchH---HHHHHHHHHHHHHHhcCccccchh
Q 024095 68 IADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPE---TTNFCMFINEVYAVLSDPVQRMVY 132 (272)
Q Consensus 68 ~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~---~~~~f~~i~~Ay~vLsd~~~R~~Y 132 (272)
...|||+||||+++++.++||+|||++++++|||++++.+. +++.|+.|++||++|+|+.+|+.|
T Consensus 115 ~~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 115 AGETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp TTCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 34799999999999999999999999999999999987543 788999999999999999999987
No 29
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.2e-17 Score=116.77 Aligned_cols=61 Identities=23% Similarity=0.238 Sum_probs=54.1
Q ss_pred CCCcCCcccccCcCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccc
Q 024095 66 DAIADDYYAVLGLLP-DATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRM 130 (272)
Q Consensus 66 ~~~~~d~Y~vLgv~~-~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~ 130 (272)
.+...++|+||||++ +++.++||+|||+|++++|||++++ .+.|++|++||++|+|+..|+
T Consensus 10 ~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~----~~~f~~i~~Aye~L~~~~~rk 71 (71)
T 2guz_A 10 KMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGS----PFLATKINEAKDFLEKRGISK 71 (71)
T ss_dssp SCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCC----HHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHhhhhhcC
Confidence 345579999999999 7999999999999999999999754 568999999999999987763
No 30
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.61 E-value=1.3e-16 Score=120.03 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=51.6
Q ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCch---HHHHHHHHHHHHHHHhcC
Q 024095 70 DDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDP---ETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 70 ~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~---~~~~~f~~i~~Ay~vLsd 125 (272)
.++|++|||+++|+.++||+|||+++++||||++++++ .+++.|+.|++||+||.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999998754 378899999999999975
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.59 E-value=2.7e-16 Score=121.58 Aligned_cols=61 Identities=11% Similarity=0.134 Sum_probs=52.9
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCC---ch----HHHHHHHHHHHHHHHhcCccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGD---DP----ETTNFCMFINEVYAVLSDPVQ 128 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~---~~----~~~~~f~~i~~Ay~vLsd~~~ 128 (272)
+...|||+|||++. |+.++||+|||++++++|||++++ ++ .+++.|+.|++||++|+|+..
T Consensus 38 ~~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~~ 105 (106)
T 3ag7_A 38 WSGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLGP 105 (106)
T ss_dssp CTTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCccc
Confidence 34579999999996 999999999999999999999763 12 368899999999999999853
No 32
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.59 E-value=2.5e-16 Score=132.91 Aligned_cols=66 Identities=21% Similarity=0.415 Sum_probs=60.0
Q ss_pred CCcCCccccc------CcCC-CCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccc
Q 024095 67 AIADDYYAVL------GLLP-DATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEI 135 (272)
Q Consensus 67 ~~~~d~Y~vL------gv~~-~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~ 135 (272)
....|||+|| |+++ +++.++||++||+|++++|||++++ +.+.|..||+||+||+||.+|..||..
T Consensus 8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~---a~~~f~~i~~AY~vL~dp~~R~~Yd~~ 80 (181)
T 3uo3_A 8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQ---GSEQSSTLNQAYHTLKDPLRRSQYMLK 80 (181)
T ss_dssp CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCS---CSSGGGSHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCcc---HHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 4567999999 4665 8999999999999999999999986 677899999999999999999999985
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.54 E-value=4.3e-16 Score=157.08 Aligned_cols=71 Identities=27% Similarity=0.466 Sum_probs=40.7
Q ss_pred CCcCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcCccccchhccccc
Q 024095 67 AIADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSDPVQRMVYDEIHG 137 (272)
Q Consensus 67 ~~~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd~~~R~~YD~~~~ 137 (272)
....|||+||||+++|+.++||+|||+|++++|||++++++++++.|++|++||++|+||.+|+.||.+|.
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~ 88 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE 88 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence 45679999999999999999999999999999999998778889999999999999999999999999863
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=1.9e-10 Score=80.75 Aligned_cols=52 Identities=10% Similarity=0.106 Sum_probs=46.3
Q ss_pred CCcccccCcCCC---CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHhcC
Q 024095 70 DDYYAVLGLLPD---ATPEQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAVLSD 125 (272)
Q Consensus 70 ~d~Y~vLgv~~~---a~~~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~vLsd 125 (272)
.+.|.||||+++ ++.++|+++||+|+..+|||++++ .....+|++|+++|..
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS----~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGS----FYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHHHH
Confidence 357899999999 999999999999999999999876 5666889999999864
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.96 E-value=4.5e-10 Score=103.05 Aligned_cols=66 Identities=32% Similarity=0.481 Sum_probs=56.2
Q ss_pred cCCcccccCcCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHHhcCccccchhcc
Q 024095 69 ADDYYAVLGLLPDATPEQIKKAYYNCMKACHPDLSGDD---PETTNFCMFINEVYAVLSDPVQRMVYDE 134 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~---~~~~~~f~~i~~Ay~vLsd~~~R~~YD~ 134 (272)
..++|.+||+..+++.++|+++|+++++++|||+.+.. ..+.+.|+.|++||++|+|+.+|..||.
T Consensus 381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 34899999999999999999999999999999999874 2478899999999999999999999997
No 36
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=98.61 E-value=1.3e-08 Score=73.85 Aligned_cols=60 Identities=32% Similarity=0.592 Sum_probs=47.8
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccC---------CCCHHHHHHHHHhCcccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ---------CGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q---------~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.+|...|+|||.|..+||+.|.++++ |.+.+..+ .+....+..++..||++||++...
T Consensus 3 ~v~vd~~~CigCg~C~~~CP~~~~~~~~-g~~~~~~~~~~~~~~~~~~~c~~C~~C~~~CP~~AI~~~~~ 71 (81)
T 1iqz_A 3 YTIVDKETCIACGACGAAAPDIYDYDED-GIAYVTLDDNQGIVEVPDILIDDMMDAFEGCPTDSIKVADE 71 (81)
T ss_dssp EEEECTTTCCCCSHHHHHCTTTEEECTT-SCEEETTTTTSSCSCCCGGGHHHHHHHHHHCTTCCEEEESS
T ss_pred EEEEecccCcccChhhHhCchheeeCCC-CeEEEeccCccccCCCCHHHHHHHHHHHHhCCHhHEEEecC
Confidence 4678999999999999999999998755 77665532 223456789999999999998754
No 37
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=98.42 E-value=1.3e-07 Score=65.06 Aligned_cols=60 Identities=33% Similarity=0.776 Sum_probs=47.3
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccC-CCCHHHHHHHHHhCccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q-~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+.+|...|+||+.|..++|+.|.++++.|.+.++.. .........++..||++||.+.+
T Consensus 3 ~~~id~~~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 63 (64)
T 1dax_A 3 KFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWED 63 (64)
T ss_dssp CCEECSTTCCSCCHHHHHCTTTEEECSSSSSEEECCGGGSCHHHHHHHHHHSSSCCEECCC
T ss_pred EEEEccccCCCchHHHHhCCccEeEcCCCCEEEEecCCCcchhHHHHHHHhCCHhhEeeec
Confidence 3567888999999999999998988765456555532 34456788999999999999864
No 38
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=98.30 E-value=2.8e-07 Score=62.04 Aligned_cols=58 Identities=36% Similarity=0.701 Sum_probs=43.0
Q ss_pred cccCcccccccCcccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
+.+|...|++|+.|..++|..|.++++ |...+............++..||++||.+++
T Consensus 3 ~~i~~~~C~~C~~C~~~Cp~~~~~~~~-~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~~~ 60 (60)
T 1rof_A 3 VRVDADACIGCGVCENLCPDVFQLGDD-GKAKVLQPETDLPCAKDAADSCPTGAISVEE 60 (60)
T ss_dssp SEECTTTCCSCCSSTTTCTTTBCCCSS-SCCCBSCSSCCSTTHHHHHHHCTTCCEECCC
T ss_pred EEEchhhCCCChHHHHhCcHHHeECCC-CCEeecCchhhHHHHHHHHHhCCHhHEEEeC
Confidence 567888899999999999988887654 5544432122334467899999999998753
No 39
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=98.27 E-value=2.3e-07 Score=63.76 Aligned_cols=59 Identities=31% Similarity=0.619 Sum_probs=44.9
Q ss_pred ccccCcccccccCcccCCCCcceeecccccceEEccCC-CC---HHHHHHHHHhCccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQC-GI---NEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q~-g~---~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+.+|...|++|+.|..++|..|.++++ |...++.+. .+ ......+++.||++||.+.+
T Consensus 3 ~~~id~~~C~~C~~C~~~Cp~~~~~~~~-~~~~~~~~~~~~~~~c~~c~~C~~~CP~~Ai~~~~ 65 (66)
T 1sj1_A 3 KVSVDQDTCIGDAICASLCPDVFEMNDE-GKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE 65 (66)
T ss_dssp EEEECTTTCCCCCHHHHHCTTTEEECTT-SCEEESCSCBCCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEECcccCcCchHHHHhCCceEEECCC-CceeecccCCCcHHHHHHHHHHHhhCCHhhEEEec
Confidence 3567888999999999999998888654 666555431 22 34568899999999998753
No 40
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=98.22 E-value=5.2e-07 Score=60.59 Aligned_cols=56 Identities=32% Similarity=0.712 Sum_probs=42.9
Q ss_pred cccCcccccccCcccCCCCcceeecccccceEEccC-CCCHHHHHHHHHhCcccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEVFKIEEDFGRARVYNQ-CGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~F~~e~d~g~a~v~~q-~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
+.+| ..|++|+.|..++|..|.++++ |...++.+ .........+++.||++||.++
T Consensus 2 v~id-~~C~~C~~C~~~CP~~~~~~~~-~~~~~~~~~~~~C~~C~~C~~~CP~~Ai~~~ 58 (58)
T 1f2g_A 2 IEVN-DDCMACEACVEICPDVFEMNEE-GDKAVVINPDSDLDCVEEAIDSCPAEAIVRS 58 (58)
T ss_dssp CBCT-TTCCCCCHHHHHCTTTEEECSS-SSSEEESCTTCCSTHHHHHHHTCSSCCCBCC
T ss_pred cEEC-CcCccchHHHHhCCccEEECCC-CcEEEeCCCccchHHHHHHHhhCChhhEEeC
Confidence 4577 8899999999999998888654 55555542 3334567899999999999863
No 41
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=98.13 E-value=5.4e-07 Score=60.40 Aligned_cols=57 Identities=35% Similarity=0.777 Sum_probs=42.1
Q ss_pred cccCcccccccCcccCCCCcceee-cccccceEEccCCCCHHHHHHHHHhCcccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEVFKI-EEDFGRARVYNQCGINEFVQQAIESCPVDCIHRT 213 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~F~~-e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~ 213 (272)
+.+|...|++|+.|..++|..|.+ +++ |...+............++..||++||.++
T Consensus 2 i~i~~~~C~~C~~C~~~Cp~~~~~~~~~-~~~~~~~~~~~c~~C~~C~~~CP~~Ai~~~ 59 (59)
T 1dwl_A 2 IVIDHEECIGCESCVELCPEVFAMIDGE-EKAMVTAPDSTAECAQDAIDACPVEAISKE 59 (59)
T ss_dssp EEESSCCCSSCCGGGGTSTTTEEEEECS-SCEEESCTTCCCGGGGTGGGGSTTCCEEEC
T ss_pred eEEChhhCcChhHHHHHCCHHheecCCC-CcEEEecChhhhhHHHHHHHhCCHhhEEcC
Confidence 456888899999999999988888 433 665552122233456689999999999863
No 42
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=97.26 E-value=9.5e-05 Score=53.18 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=38.1
Q ss_pred ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcccccccccc
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~ 215 (272)
.+|...|++|+.|..+|| ..+.+++ +...+... ...... .++..||++||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~--~~~~i~~~--~C~~C~~~~~~~~C~~~CP~~Ai~~~~~ 63 (82)
T 3eun_A 2 LMITDECINCDVCEPECPNGAISQGD--ETYVIEPS--LCTECVGHYETSQCVEVCPVDAIIKDPS 63 (82)
T ss_dssp EEECTTCCCCCTTGGGCTTCCEEECS--SSEEECGG--GCCTTTTTCSSCHHHHHCTTCCEEECGG
T ss_pred eEeCCCCcCccchHHHCChhheEcCC--CceEEchh--hcCCCCCCCCccHHHHhCCccceEEcCC
Confidence 356778999999999999 4676654 33322211 112233 7999999999999865
No 43
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=97.23 E-value=0.00016 Score=51.64 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=38.8
Q ss_pred ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcccccccccch
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~~ 216 (272)
+++...|++|+.|..++| +.+.++++ ... ++. ....... .++..||++||.+....
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~--~~~-~~~-~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~ 64 (80)
T 1rgv_A 2 LYINDDCTACDACVEECPNEAITPGDP--IYV-IDP-TKCSECVGAFDEPQCRLVCPADCIPDNPDY 64 (80)
T ss_dssp BCCCSCCCCCCTTTTTCTTCCEECCSS--SCE-ECT-TTCCTTTTTCSSCHHHHHCSSCCCCBCGGG
T ss_pred eEeCCCCcChhhHHHHcChhccCcCCC--eeE-Ecc-hhCcCCCCcCCccHHHHhcCcccEEecCCc
Confidence 356778999999999999 66777653 222 211 1122344 78999999999987654
No 44
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=97.17 E-value=0.00021 Score=51.24 Aligned_cols=56 Identities=27% Similarity=0.482 Sum_probs=38.6
Q ss_pred ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcccccccccch
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~~aI~~~~~~ 216 (272)
+++...|++|+.|..++| +.+.++++ .. +++. ....... .++..||++||.+....
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~--~~-~~~~-~~C~~C~~~~~~~~C~~~CP~~Ai~~~~~~ 64 (82)
T 2fgo_A 2 LKITDDCINCDVCEPECPNGAISQGEE--IY-VIDP-NLCTECVGHYDEPQCQQVCPVDCIPLDDAN 64 (82)
T ss_dssp BCCCTTCCCCCTTGGGCTTCCEEECSS--SE-EECT-TTCCTTTTTCSSCHHHHHCTTCCCCBCTTS
T ss_pred ceeCCCCCChhhHHHHCChhccCCCCC--eE-EEEc-hhCccCCCcCCCCHhHhhCCcccEEccCCC
Confidence 356678999999999999 66777653 22 2221 1112233 78999999999987643
No 45
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=97.13 E-value=3.3e-05 Score=57.80 Aligned_cols=60 Identities=27% Similarity=0.330 Sum_probs=40.2
Q ss_pred ccccCcccccccCcccCCCC-cceeecccccce-----EEccCCCCHHHHHHHHHhCccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRA-----RVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a-----~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
.+.+|...|++|+.|..+|| ..|.++++.+.. .+.........+..++..||++||.+..
T Consensus 37 ~~~id~~~C~~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~ 102 (103)
T 1xer_A 37 IVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADPVNEQACIFCMACVNVCPVAAIDVKP 102 (103)
T ss_dssp SEEEETTTCCCCCHHHHHCTTCCCEEEECTTCSSCSEEEECTTGGGCCCCCHHHHHCTTCCEEECC
T ss_pred eEEEehhhCCChhhHHHHcCccCeecccccCccccccceeecCcccccChhhHHHhccccceEecC
Confidence 46788899999999999999 777776532221 1111111112345899999999998754
No 46
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=96.96 E-value=4.6e-05 Score=54.11 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=39.6
Q ss_pred cccCcccccccCcccCCCC-cceeeccccc---ceEE-ccCCCCHHHHHHHHHhCcccccccccc
Q 024095 156 VFVDEFSCIGCKNCNNVAP-EVFKIEEDFG---RARV-YNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap-~~F~~e~d~g---~a~v-~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
+.+|...|++|+.|..+|| ..|.+++..+ .... ............++..||++||.+...
T Consensus 3 ~~~~~~~C~~Cg~C~~~CP~~a~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~ 67 (80)
T 1jb0_C 3 TVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASSPRTEDCVGCKRCETACPTDFLSIRVY 67 (80)
T ss_dssp EEEEETTCCCCCHHHHHCTTCCCEEEECSSSTTSEEEECTTGGGCCCCCHHHHHCCSSSCSEEEE
T ss_pred CcccCCcCcChhHHHHHCCcccccccccccccccccccCCCCCcCcCcCChhhhCCCCccEeeee
Confidence 4567778999999999999 7787765223 1111 111111223458999999999997644
No 47
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=96.82 E-value=0.00012 Score=60.28 Aligned_cols=63 Identities=21% Similarity=0.396 Sum_probs=44.5
Q ss_pred cccCcccccccC-----cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhh
Q 024095 156 VFVDEFSCIGCK-----NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLS 219 (272)
Q Consensus 156 v~vDe~~CigC~-----~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~ 219 (272)
+.+|...|++|+ .|..+|| +.+.++++.+....+.. .....+..++..||++||.+....++.
T Consensus 2 v~id~~~C~gC~~c~~~~C~~~CP~~ai~~~~~~~~~~~~d~-~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~ 70 (166)
T 3gyx_B 2 TYVDPSKCDGCKGGEKTACMYICPNDLMILDPEEMKAFNQEP-EACWECYSCIKICPQGAITARPYADFA 70 (166)
T ss_dssp EEECTTTCCCCCSSSCCHHHHHCTTSCEEEETTTTEEEESCG-GGCCCCCHHHHHCSSCCEEECCCTTTC
T ss_pred CEEcchhcCCCCCCCcchhHHhCCccccEEecCCceeEecCc-ccCcccChHhHhCCccceEEecccccc
Confidence 467888999999 9999999 56777765333333321 112234589999999999998776544
No 48
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=96.79 E-value=0.00038 Score=62.39 Aligned_cols=68 Identities=22% Similarity=0.424 Sum_probs=45.5
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHH---HHHHHhCcccccccccchhhhhH
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFV---QQAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i---~~Av~~CP~~aI~~~~~~~l~~l 221 (272)
..+.+|...|++|+.|...|| +.+.++++.+....-...++.... -.++..||++||.+.+.+++..+
T Consensus 124 g~v~id~~~CigCg~C~~~CP~~ai~~~~~~~~~~kC~~C~~r~~~g~~p~Cv~~CP~~Ai~~~~~~~~~~~ 195 (294)
T 1kqf_B 124 GIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLEL 195 (294)
T ss_dssp SCEEECGGGCCCCCHHHHHCTTCCCEEETTTTEEECCCTTHHHHTTTCCCHHHHHCTTSCEEEEEHHHHHHH
T ss_pred cceEeCcccCCCcchhhhcCCCCCcEecCCCCCeeeCCCccchhhcCccHHHHHhCCcCcEEEecHHHHHHH
Confidence 356789999999999999999 567776543433211111111111 18999999999999887765543
No 49
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=96.74 E-value=0.00012 Score=59.16 Aligned_cols=65 Identities=22% Similarity=0.429 Sum_probs=45.0
Q ss_pred cccCcccccccC-----cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhH
Q 024095 156 VFVDEFSCIGCK-----NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 156 v~vDe~~CigC~-----~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~l 221 (272)
+.+|...|++|+ .|..+|| +.+.++++.+.+.++.. .....+..++..||++||.+....++..+
T Consensus 3 ~~vd~~~C~~C~~~~~~~C~~~CP~~ai~~~~~~~~~~~id~-~~C~~Cg~Cv~~CP~~AI~~~~~~~~~~~ 73 (150)
T 1jnr_B 3 SFVNPEKCDGCKALERTACEYICPNDLMTLDKEKMKAYNREP-DMCWECYSCVKMCPQGAIDVRGYVDYSPL 73 (150)
T ss_dssp EEECTTTCCSCCSSSSCHHHHHCTTSCEEEETTTTEEEESCG-GGCCCCCHHHHHCTTCCEEECCCTTTCCT
T ss_pred eEECcccCCCCCCcccccchhhcCccCeEEecCCceeeeeCc-ccCcCHhHHHHhCCccceEecCcchhhhh
Confidence 457888999999 9999999 56777765233333322 11223458999999999999876654433
No 50
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=96.73 E-value=0.00051 Score=49.60 Aligned_cols=55 Identities=18% Similarity=0.424 Sum_probs=37.1
Q ss_pred ccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH------HHHHhCcc-cccccccc
Q 024095 157 FVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ------QAIESCPV-DCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~------~Av~~CP~-~aI~~~~~ 215 (272)
+++...|++|+.|..+|| +.+.++++ ...+... ...... .++..||+ +||.+...
T Consensus 2 ~~~~~~C~~C~~C~~~CP~~ai~~~~~--~~~~~~~--~C~~C~~~~~~~~C~~~CP~~~Ai~~~~~ 64 (85)
T 2zvs_A 2 LLITKKCINCDMCEPECPNEAISMGDH--IYEINSD--KCTECVGHYETPTCQKVCPIPNTIVKDPA 64 (85)
T ss_dssp EEECTTCCCCCTTTTTCTTCCEECCSS--SCEECGG--GCCTTTTTCSSCHHHHHCSSCCEEECTTS
T ss_pred EEeCCcCcChhHHHHHCchhccCcCCC--ceEEeCh--hccCCCCcCCccHhhHhCcCCCCEEecCC
Confidence 356678999999999999 56766552 2222111 111233 78999999 99998755
No 51
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=96.38 E-value=0.0046 Score=43.41 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=37.3
Q ss_pred ccCcccccc--cCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 157 FVDEFSCIG--CKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~Cig--C~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
++|...|++ |+.|..++| +.+.+++ +... +.. ........++..||++||.+....
T Consensus 2 ~i~~~~C~~c~C~~C~~~Cp~~ai~~~~--~~~~-~~~-~~C~~Cg~C~~~CP~~ai~~~~~~ 60 (77)
T 1bc6_A 2 YVITEPCIGTKDASCVEVCPVDCIHEGE--DQYY-IDP-DVCIDCGACEAVCPVSAIYHEDFV 60 (77)
T ss_dssp EECCSTTTTCCCCSSTTTCTTCCEEECS--SSEE-ECT-TTCCSCCSHHHHSGGGSSEETTTS
T ss_pred EEeCccCCCCCcchhHHhcccccEEeCC--CcEE-ECc-ccCcCccCCHhhcCccceEecCCC
Confidence 456778999 899999999 4566654 3322 221 111223478899999999986543
No 52
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=96.19 E-value=0.0026 Score=44.88 Aligned_cols=55 Identities=22% Similarity=0.288 Sum_probs=38.1
Q ss_pred ccCcccccc--cCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 157 FVDEFSCIG--CKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~Cig--C~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
++|...|++ |+.|..++| +.+.+++ +... +.. ........++..||++||.+...
T Consensus 2 ~i~~~~C~~c~C~~C~~~CP~~ai~~~~--~~~~-~~~-~~C~~C~~C~~~CP~~Ai~~~~~ 59 (78)
T 1h98_A 2 HVICEPCIGVKDQSCVEVCPVECIYDGG--DQFY-IHP-EECIDCGACVPACPVNAIYPEED 59 (78)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECS--SSEE-ECT-TTCCCCCTHHHHCTTCCEEEGGG
T ss_pred EEEchhCCCCCcChhhhhcCccceEcCC--CEEE-ECc-ccCCcHhHHHHhCCccceEeccc
Confidence 457788999 999999999 4677765 3332 222 11222447899999999997654
No 53
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=96.05 E-value=0.0021 Score=56.96 Aligned_cols=62 Identities=15% Similarity=0.131 Sum_probs=42.6
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccC-CCCHHHH------H---HHHHhCcccccccccchhh
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQ-CGINEFV------Q---QAIESCPVDCIHRTSAQQL 218 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q-~g~~e~i------~---~Av~~CP~~aI~~~~~~~l 218 (272)
..+.+|...|++|+.|...|| ....++++.+.. .+ .+-.+.+ - .+++.||++||.+.+..+.
T Consensus 90 g~v~id~~~CigC~~C~~~CP~~Ai~~~~~~~~~---~kC~~C~~r~~~~~~~G~~P~Cv~~CP~~Ai~~~~~~dp 162 (274)
T 1ti6_B 90 GIVLIDPEKAKGKKELLDTCPYGVMYWNEEENVA---QKCTMCAHLLDDESWAPKMPRCAHNCGSFVYEFLKTTPE 162 (274)
T ss_dssp SCEEECTTTTTTCGGGGGGCSSCCCEEETTTTEE---ECCCTTHHHHTCTTCTTCSCHHHHHCSSCCEEEEEECHH
T ss_pred CcEEechhhccchHHHHhhCccCCeEEEcccCcc---ccCCCchhhhhhhccCCCCcchhhhCCcCceEEcCCCcH
Confidence 456789999999999999999 445555432322 12 2212222 1 7899999999999887744
No 54
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=95.98 E-value=0.0031 Score=47.33 Aligned_cols=55 Identities=24% Similarity=0.386 Sum_probs=38.6
Q ss_pred ccCcccccccC--cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 157 FVDEFSCIGCK--NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 157 ~vDe~~CigC~--~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
++|...|++|+ .|..+|| ..+.+++ +... +.. .....+..++..||++||.+...
T Consensus 2 ~~~~~~C~~C~~~~C~~~CP~~ai~~~~--~~~~-i~~-~~C~~Cg~C~~~CP~~ai~~~~~ 59 (106)
T 7fd1_A 2 FVVTDNCIKCKYTDCVEVCPVDCFYEGP--NFLV-IHP-DECIDCALCEPECPAQAIFSEDE 59 (106)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECS--SCEE-ECT-TTCCCCCTTGGGCTTCCEEEGGG
T ss_pred eECccccCCccCcHHHHHcCccceEcCC--CcEE-ECc-ccCCChhhhHHhCCChhhhcccc
Confidence 46778899999 9999999 5666655 3332 221 11223447899999999998765
No 55
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=95.92 E-value=0.00071 Score=55.48 Aligned_cols=56 Identities=23% Similarity=0.329 Sum_probs=35.5
Q ss_pred CcccccccCcccCCCC-cceeeccccc-------------ceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 159 DEFSCIGCKNCNNVAP-EVFKIEEDFG-------------RARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 159 De~~CigC~~C~~~ap-~~F~~e~d~g-------------~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
|...|++|+.|..+|| ..+.++.+.. ....+. ......+..++..||++||.+...
T Consensus 49 d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~C~~C~~C~~~CP~~Ai~~~~~ 118 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAYAIYVEPAENDPENPVSAGERYAKVYEIN-MLRCIFCGLCEEACPTGAIVLGYD 118 (182)
T ss_dssp SCBSCCCCCHHHHHCTTCCEEEEEECCCSSSCSSSSSCEEEEEEEE-TTTCCCCCHHHHHCSSSCEEECSC
T ss_pred CCccCcccccchhhCCcccEEeecccccccccccccccccceeecC-CCcCcChhChhhhCCccceEecCc
Confidence 5678999999999999 3444432111 011111 222334558999999999998753
No 56
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=95.87 E-value=0.0073 Score=39.38 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=32.7
Q ss_pred cccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024095 160 EFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 160 e~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
...|++|+.|..++|. .+.+++ +... +.. .........+..||++||.+
T Consensus 5 ~~~C~~C~~C~~~CP~~ai~~~~--~~~~-~~~-~~C~~C~~C~~~CP~~ai~~ 54 (55)
T 2fdn_A 5 NEACISCGACEPECPVNAISSGD--DRYV-IDA-DTCIDCGACAGVCPVDAPVQ 54 (55)
T ss_dssp CTTCCCCCTTGGGCTTCCEECCS--SSCE-ECT-TTCCCCCHHHHTCTTCCEEE
T ss_pred cccCcChhhHHHHCCccccCcCC--CEEE-ecc-ccCcChhChHHHccccceec
Confidence 5579999999999994 455554 3322 221 11122447899999999975
No 57
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=95.53 E-value=0.0065 Score=51.00 Aligned_cols=59 Identities=20% Similarity=0.377 Sum_probs=41.6
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccC-CCCHHHHH-----HHHHhCcccccccccch
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQ-CGINEFVQ-----QAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q-~g~~e~i~-----~Av~~CP~~aI~~~~~~ 216 (272)
..+.+|...|++|+.|..+|| +.+.++++.+ ... .+-.+.+. .+++.||++||.+.+..
T Consensus 81 g~~~id~~~CigC~~C~~~CP~~Ai~~~~~~~----~~kC~~C~~~~~~g~~p~Cv~~CP~~Ai~~g~~~ 146 (195)
T 2vpz_B 81 GLVLVDPKKCIACGACIAACPYDARYLHPAGY----VSKCTFCAHRLEKGKVPACVETCPTYCRTFGDLE 146 (195)
T ss_dssp SCEEECTTTCCCCCHHHHHCTTCCCEECTTSS----EECCCTTHHHHHTTCCCHHHHSCTTCCEEEEETT
T ss_pred cceeecCCCCCCcChhHhhCCCCCeEECCCCC----CccCcCcchHHhCCCCchhHhhCCcccEEEeccc
Confidence 346788899999999999999 6677776534 112 22122222 58999999999997655
No 58
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=95.41 E-value=0.0012 Score=68.68 Aligned_cols=60 Identities=20% Similarity=0.425 Sum_probs=44.4
Q ss_pred CccccCcccccccCcccCCCC----cceeecccccceEEccCCCCHHHHHHHHHhCcc-cccccccch
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP----EVFKIEEDFGRARVYNQCGINEFVQQAIESCPV-DCIHRTSAQ 216 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap----~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~-~aI~~~~~~ 216 (272)
..+.+|+..|++|+.|..+|| +.+.++++.+.. ++. ..+..+..++..||+ +||.++...
T Consensus 944 ~~~~id~~~C~~Cg~C~~~CP~~~~~ai~~~~~~~~~-~~~--~~C~~Cg~C~~~CP~~~Ai~~~~~~ 1008 (1025)
T 1gte_A 944 VVAVIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLP-TVT--DTCTGCTLCLSVCPIIDCIRMVSRT 1008 (1025)
T ss_dssp EEEEECTTTCCCCCHHHHHHHHHSCSCEEECTTTCCE-EEC--TTCCCCCHHHHHCSSTTTEEEEECC
T ss_pred ceEEEEcccCcccCHHHHhcCccccCCEEEeCCCceE-EeC--ccCCChhHHHhhCCCCCCEEEecCc
Confidence 345789999999999999999 677777652333 332 334446689999999 999987653
No 59
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=95.33 E-value=0.0029 Score=53.97 Aligned_cols=65 Identities=9% Similarity=0.151 Sum_probs=44.6
Q ss_pred CccccCccccc--ccCcccCCCC-cceeecccccceEEccC-CCCHHHHH-----HHHHhCcccccccccchhhhhH
Q 024095 154 DHVFVDEFSCI--GCKNCNNVAP-EVFKIEEDFGRARVYNQ-CGINEFVQ-----QAIESCPVDCIHRTSAQQLSLL 221 (272)
Q Consensus 154 ~~v~vDe~~Ci--gC~~C~~~ap-~~F~~e~d~g~a~v~~q-~g~~e~i~-----~Av~~CP~~aI~~~~~~~l~~l 221 (272)
..+.+|...|+ +|+.|...|| ....++++.+.. .. .+=.+.+. .++..||++||.+.+..++..+
T Consensus 99 g~v~id~~~C~~~~C~~C~~~CP~~Ai~~~~~~~~~---~kC~~C~~~~~~G~~p~Cv~~CP~~Ai~~~~~~~~~~~ 172 (214)
T 1h0h_B 99 GCVLFTPKTKDLEDYESVISACPYDVPRKVAESNQM---AKCDMCIDRITNGLRPACVTSCPTGAMNFGDLSEMEAM 172 (214)
T ss_dssp CCEEECGGGGGCSCHHHHHHHCTTCCCEECTTSSCE---ECCCTTHHHHTTTCCCHHHHHCSSSCEEEEEHHHHHHH
T ss_pred CeEEEeHHHCccccccHHHHhcCCCCeEecCCCccc---CcCCCCcchhhcCCChhHHHhcCcccEEEccHHHHHHH
Confidence 35678889999 9999999999 456665543321 11 22122222 7899999999999988776543
No 60
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=95.27 E-value=0.0055 Score=56.24 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=41.2
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccccchh
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRTSAQQ 217 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~~~~~ 217 (272)
..+.+|...|++|+.|..+|| +...+++..+....- .+-.+.+. .++..||++||.+.+..+
T Consensus 175 g~v~id~~kCigCg~Cv~aCP~~Ai~~~~~~~~~~kC--~~C~~r~~~g~~paCv~~CP~~Ai~~g~~~d 242 (352)
T 2ivf_B 175 GIVLVDQERCKGHRHCVEACPYKAIYFNPVSQTSEKC--ILCYPRIEKGIANACNRQCPGRVRAFGYLDD 242 (352)
T ss_dssp CCEEECTTTCCCCCHHHHHCTTCCEEEETTTTEEEEC--CTTHHHHTTTBCCHHHHTCTTCCEEEEETTC
T ss_pred CeEEechhhcCCchHHHhhcCccceeccccccccccc--CCCcchhhcCCCChHHHhcCccceeccccch
Confidence 346678889999999999999 445555432322211 11112232 789999999999976654
No 61
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=95.25 E-value=0.0012 Score=49.50 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=38.0
Q ss_pred ccCccccccc--CcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 157 FVDEFSCIGC--KNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 157 ~vDe~~CigC--~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
++|...|++| +.|..+|| +.+.+++ +.. .+.. ........++..||++||.+....
T Consensus 2 ~i~~~~C~~C~c~~C~~~CP~~ai~~~~--~~~-~~~~-~~C~~Cg~C~~~CP~~Ai~~~~~~ 60 (105)
T 2v2k_A 2 YVIAEPCVDVKDKACIEECPVDCIYEGA--RML-YIHP-DECVDCGACEPVCPVEAIYYEDDV 60 (105)
T ss_dssp EEECGGGTTTCCCHHHHHCTTCCEEECS--SCE-EECT-TTCCCCCCSGGGCTTCCEEEGGGC
T ss_pred EEecccCCCCCcChhhhhcCccccCcCC--CcE-EEeC-CcCcchhhHHHhCCccCEEecCCC
Confidence 4677889988 99999999 5676654 232 2221 112224468899999999987543
No 62
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=95.02 E-value=0.0011 Score=62.27 Aligned_cols=59 Identities=27% Similarity=0.459 Sum_probs=39.6
Q ss_pred ccccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCccccccc-ccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR-TSA 215 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~-~~~ 215 (272)
.+.+|...|++|+.|..+||. .+.+++ |....+.....+..+..++..||++||.+ ...
T Consensus 27 ~i~~d~~kCi~Cg~C~~~CP~~ai~~~~--~~~~~i~~~~~C~~Cg~C~~~CP~~Ai~~~~~~ 87 (421)
T 1hfe_L 27 FVQIDEAKCIGCDTCSQYCPTAAIFGEM--GEPHSIPHIEACINCGQCLTHCPENAIYEAQSW 87 (421)
T ss_dssp SEEECTTTCCCCCHHHHHCTTCCCBCCT--TSCCBCCCGGGCCCCCTTGGGCTTCCEEESCCC
T ss_pred eEEECcccCCCccHHHHhcCcCceeccc--ccceeecChhhCCchhhHHHhhCcCCccccccc
Confidence 467889999999999999995 444443 33222211122233558999999999998 443
No 63
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=94.52 E-value=0.0028 Score=61.84 Aligned_cols=62 Identities=23% Similarity=0.382 Sum_probs=42.0
Q ss_pred CccccCcccccccCcccCCCCc-----ceeecccccceEEcc------CCCCHHHHHHHHHhCcccccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPE-----VFKIEEDFGRARVYN------QCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~-----~F~~e~d~g~a~v~~------q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
..+.+|...|++|+.|..+||. .+.+.++.....+.. ....+..+..++..||++||.+...
T Consensus 138 ~~i~~d~~kCi~Cg~Cv~~CP~~~~~~ai~~~~~g~~~~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~ 210 (574)
T 3c8y_A 138 KSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKSH 210 (574)
T ss_dssp SSEEEEGGGCCCCCHHHHHHHHHHSCCCSEEEEETTEEEEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECCC
T ss_pred CcceeCcccCcCCCCccchhCchhcCCceeeccCCccceecccccceechhhCCcchhHHHhhccCCcccccc
Confidence 3567899999999999999994 566654312222211 0122234568999999999998764
No 64
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=94.07 E-value=0.0049 Score=62.26 Aligned_cols=61 Identities=25% Similarity=0.349 Sum_probs=40.3
Q ss_pred ccccCcccccccCcccCCCCc-----ceeecccccceEEccC--CCCHHHHHHHHHhCcccccccccc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPE-----VFKIEEDFGRARVYNQ--CGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~-----~F~~e~d~g~a~v~~q--~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.+|...||+|+.|..+|++ .+.+.++.....+... ..++..+-.+++.||++||...+.
T Consensus 173 ~i~~d~~~CI~C~~Cv~~C~~~~~~~~i~~~~~g~~~~i~~~~~~~~C~~CG~Cv~vCP~gAl~~~~~ 240 (783)
T 3i9v_3 173 FVILDRERCIHCKRCVRYFEEVPGDEVLDFIERGVHTFIGTMDFGLPSGFSGNITDICPVGALLDLTA 240 (783)
T ss_dssp TEEECTTTCCCCCHHHHHHHHTTCCCCCEECSCTTSCCEECSSTTCCSTTTTTHHHHCSSSSEEEGGG
T ss_pred cEEEchhhCCCccHHHHHhhhhcCCceeeeecCCCccEEccCCCCCCCccchhHHhhcccCceecccc
Confidence 466799999999999999954 3444433122222221 123456778999999999986554
No 65
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=92.37 E-value=0.036 Score=53.25 Aligned_cols=58 Identities=17% Similarity=0.246 Sum_probs=37.2
Q ss_pred CccccCcccccccCcccCCCC-cceeecccccceEEccCCCCHHHHH-----HHHHhCcccccccc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQ-----QAIESCPVDCIHRT 213 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~-----~Av~~CP~~aI~~~ 213 (272)
..+.+|...|++|+.|..+|| +...++.+.+....-...+ +.+. .++..||++||.+.
T Consensus 208 g~v~id~~kCigCg~Cv~~CP~~AI~~~~~~~~~~kC~~Cg--~ri~~G~~P~Cv~~CP~~Ai~~g 271 (512)
T 1q16_B 208 GIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCY--PRIEAGQPTVCSETCVGRIRYLG 271 (512)
T ss_dssp CCEEECTTTCCCCCCHHHHCTTCCEEEETTTTEEEECCTTH--HHHTTTCCCHHHHTCTTCCEEEE
T ss_pred CeEEECHHHCCCchHHHhhCCccceecccCCCCcccCcCCC--chhhcCCCCceEeeCchhhhhcc
Confidence 346678888999999999998 4455554433322111111 2221 78999999998865
No 66
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=90.77 E-value=0.036 Score=58.66 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=40.0
Q ss_pred cccCcccccccCcccCCCCcc-eee---ccc--------c-----------cce-EEccCCCCHHHHHHHHHhCcc--cc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV-FKI---EED--------F-----------GRA-RVYNQCGINEFVQQAIESCPV--DC 209 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~-F~~---e~d--------~-----------g~a-~v~~q~g~~e~i~~Av~~CP~--~a 209 (272)
+.+|...||+|+.|..+||.. ..+ +++ + |.. .......++..|-.|+..||+ +|
T Consensus 681 p~~d~~kCi~Cg~Cv~vCP~~AI~~~~~~~~e~~~ap~g~~~~~~~~k~~~g~~~~~~v~~~~C~gCG~Cv~vCP~~~~A 760 (1231)
T 2c42_A 681 PQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKFRIQINTLDCMGCGNCADICPPKEKA 760 (1231)
T ss_dssp EEECTTTCCCCCHHHHHCSSCCEEEEEECGGGGTTCCTTCCCEECCSGGGTTCEEEEEECTTTCCCCCHHHHHCSSSSCS
T ss_pred eEEeCccCCchhhHHHhCCcccccccccchHHHhhCcccccccccccccccccccceeechhhCCChhHHHhhCCCCccC
Confidence 356889999999999999954 222 111 0 100 111113334456699999999 99
Q ss_pred cccccchh
Q 024095 210 IHRTSAQQ 217 (272)
Q Consensus 210 I~~~~~~~ 217 (272)
|.++...+
T Consensus 761 I~~~~~~~ 768 (1231)
T 2c42_A 761 LVMQPLDT 768 (1231)
T ss_dssp EEEEEGGG
T ss_pred eEEecchh
Confidence 99887654
No 67
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=88.37 E-value=0.47 Score=39.45 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=38.6
Q ss_pred ccccCcccccccC--cccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 155 HVFVDEFSCIGCK--NCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~CigC~--~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.++...|++|+ .|..+|| ..+.++++ |... ++. ........++..||.+||.+...
T Consensus 50 ~~~~~~~~C~~C~~p~C~~~CP~gAi~~~~~-g~~~-id~-~~CigC~~C~~~CP~~Ai~~~~~ 110 (195)
T 2vpz_B 50 VVEFRPEQCLHCENPPCVPVCPTGASYQTKD-GLVL-VDP-KKCIACGACIAACPYDARYLHPA 110 (195)
T ss_dssp EEEEEEEECCCCSSCTTTTTCSSSCEEECTT-SCEE-ECT-TTCCCCCHHHHHCTTCCCEECTT
T ss_pred eEEECcccCcCccCcHHHHhcCCCceecccc-ccee-ecC-CCCCCcChhHhhCCCCCeEECCC
Confidence 3566778899999 6999999 44555433 5433 222 11122457899999999998654
No 68
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=87.40 E-value=0.36 Score=47.34 Aligned_cols=46 Identities=7% Similarity=0.071 Sum_probs=36.2
Q ss_pred cCCcccccCcCCCCCH--HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHH
Q 024095 69 ADDYYAVLGLLPDATP--EQIKKAYYNCMKACHPDLSGDDPETTNFCMFINEVYAV 122 (272)
Q Consensus 69 ~~d~Y~vLgv~~~a~~--~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~v 122 (272)
..|||.+||++.+... .+|+++||++++..+++ .+++..|..|+.|
T Consensus 628 ~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~--------~~r~~lvd~a~~v 675 (681)
T 2pzi_A 628 KASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ--------RHRYTLVDMANKV 675 (681)
T ss_dssp CCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH--------HHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh--------HHHHHHHHHhccc
Confidence 4459999999766655 67999999999976554 4677888888876
No 69
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=86.36 E-value=0.26 Score=45.08 Aligned_cols=59 Identities=22% Similarity=0.336 Sum_probs=39.2
Q ss_pred ccccCcccccccC--cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 155 HVFVDEFSCIGCK--NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~CigC~--~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.++...|++|+ .|..+||. ....+++.|... ++. .....+..++..||.+||.+...
T Consensus 143 ~~~~~~~~C~~C~~~~Cv~~CP~gAi~~~~~~g~v~-id~-~kCigCg~Cv~aCP~~Ai~~~~~ 204 (352)
T 2ivf_B 143 FFFYLARMCNHCTNPACLAACPTGAIYKREDNGIVL-VDQ-ERCKGHRHCVEACPYKAIYFNPV 204 (352)
T ss_dssp ECEEEEECCCCCSSCHHHHHCTTCCEEECTTTCCEE-ECT-TTCCCCCHHHHHCTTCCEEEETT
T ss_pred EEEECCCCCcCcCCccccccCCCCceeecCCCCeEE-ech-hhcCCchHHHhhcCccceecccc
Confidence 4567788999999 89999994 344443335433 322 11223458999999999988643
No 70
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=85.37 E-value=0.099 Score=50.74 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=39.2
Q ss_pred Ccccc------cccCcccCCCC-cceee-ccccc-c-eEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 159 DEFSC------IGCKNCNNVAP-EVFKI-EEDFG-R-ARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 159 De~~C------igC~~C~~~ap-~~F~~-e~d~g-~-a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
|...| ..|+.|..+|| .++++ +++.| . ..+++ ...+-.+..|...||+++|.|+.+
T Consensus 508 d~~~~~~~~~~~~~~~c~~~CPa~~~~~~~~~~~~~~~~~i~-~~~Ci~C~~C~~~cp~~~i~~~~p 573 (584)
T 2gmh_A 508 DDSVPVNRNLSIYDGPEQRFCPAGVYEFVPLEQGDGFRLQIN-AQNCVHCKTCDIKDPSQNINWVVP 573 (584)
T ss_dssp STTHHHHTHHHHHCCTHHHHCTTCCEEEEECSSTTCEEEEEC-GGGCCCCCHHHHHCTTCCEEECCC
T ss_pred CcccchhhchhhhcchhhhcCChhhEEEeecCCCCceEEEEe-CCCCcCCCCchhhCCCCCceeECC
Confidence 66778 88999999999 77887 53224 1 22332 222334568999999999999764
No 71
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=84.48 E-value=0.11 Score=49.82 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=38.9
Q ss_pred ccccCcccccccC--cccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccc
Q 024095 155 HVFVDEFSCIGCK--NCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSA 215 (272)
Q Consensus 155 ~v~vDe~~CigC~--~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~ 215 (272)
.+.++...|++|+ .|..+||. ...+.++.|...+ ++ .....+..++..||++||.+...
T Consensus 176 ~i~~~~~~C~~C~~~~Cv~aCP~gAI~~~~~~g~v~i-d~-~kCigCg~Cv~~CP~~AI~~~~~ 237 (512)
T 1q16_B 176 FMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLI-DQ-DKCRGWRMCITGCPYKKIYFNWK 237 (512)
T ss_dssp CCEEEEECCCCCSSCHHHHTCTTCCEEEETTTCCEEE-CT-TTCCCCCCHHHHCTTCCEEEETT
T ss_pred eEEecCccCcCCCCchhhhhCCcCcEEeecCCCeEEE-CH-HHCCCchHHHhhCCccceecccC
Confidence 3556788999999 59999994 3545433254433 22 11223457899999999998653
No 72
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=76.25 E-value=0.54 Score=39.68 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=36.3
Q ss_pred ccCcccccccCc--ccCCCC---cc-eeecccccceEEccCCCCHH--HHHHHHHhCccccccccc
Q 024095 157 FVDEFSCIGCKN--CNNVAP---EV-FKIEEDFGRARVYNQCGINE--FVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 157 ~vDe~~CigC~~--C~~~ap---~~-F~~e~d~g~a~v~~q~g~~e--~i~~Av~~CP~~aI~~~~ 214 (272)
..+...|++|+. |..+|| .. +..+++.|...+. + .... .+..++..||.+||.+..
T Consensus 66 ~~~~~~C~~C~~p~C~~~CP~~~~gAi~~~~~~g~v~id-~-~~C~~~~C~~C~~~CP~~Ai~~~~ 129 (214)
T 1h0h_B 66 LFFPDQCRHCIAPPCKATADMEDESAIIHDDATGCVLFT-P-KTKDLEDYESVISACPYDVPRKVA 129 (214)
T ss_dssp EEEEECCCCCSSCHHHHHHTTTCTTSEEECTTTCCEEEC-G-GGGGCSCHHHHHHHCTTCCCEECT
T ss_pred eecCCcCcCcCCchhhccCCccccccEEecCCCCeEEEe-H-HHCccccccHHHHhcCCCCeEecC
Confidence 345678999997 999998 32 3333323543322 1 1122 467899999999999864
No 73
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=72.03 E-value=0.61 Score=40.99 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=36.9
Q ss_pred cccCcccccccCc--ccCCCCcceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024095 156 VFVDEFSCIGCKN--CNNVAPEVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 156 v~vDe~~CigC~~--C~~~ap~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
+......|++|+. |..+||..+..+++ |.. ++++ .....+..++..||.+||.+..
T Consensus 61 ~~~~~~~C~~C~~p~C~~~CP~Ai~~~~~-g~v-~id~-~~CigC~~C~~~CP~~Ai~~~~ 118 (274)
T 1ti6_B 61 INYRPTPCMHCENAPCVAKGNGAVYQRED-GIV-LIDP-EKAKGKKELLDTCPYGVMYWNE 118 (274)
T ss_dssp EEEEEECCCCCTTCHHHHHTTTSEEECTT-SCE-EECT-TTTTTCGGGGGGCSSCCCEEET
T ss_pred eeEcCCcCCCCCChHHHhhChHHhhhccC-CcE-Eech-hhccchHHHHhhCccCCeEEEc
Confidence 3455677999998 99999983223322 543 3322 2233456789999999999864
No 74
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=70.96 E-value=1.4 Score=38.99 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=35.9
Q ss_pred cccCcccccccC--cccCCCCc--ceeecccccceEEccCCCCHHHHHHHHHhCccccccccc
Q 024095 156 VFVDEFSCIGCK--NCNNVAPE--VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTS 214 (272)
Q Consensus 156 v~vDe~~CigC~--~C~~~ap~--~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~ 214 (272)
+.++...|++|+ .|..+||. .+...++ |...+... ....+..++..||.++|.+..
T Consensus 93 ~~~~~~~C~~C~~~~C~~~CP~~gAi~~~~~-g~v~id~~--~CigCg~C~~~CP~~ai~~~~ 152 (294)
T 1kqf_B 93 WLIRKDGCMHCEDPGCLKACPSAGAIIQYAN-GIVDFQSE--NCIGCGYCIAGCPFNIPRLNK 152 (294)
T ss_dssp EEEEEESCCCBSSCHHHHHCCSTTSEEEETT-SCEEECGG--GCCCCCHHHHHCTTCCCEEET
T ss_pred EEECcccCCCcCChhhhhhCCccCccccccc-cceEeCcc--cCCCcchhhhcCCCCCcEecC
Confidence 345667799999 79999985 3444333 54332221 111244788999999998754
No 75
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=70.03 E-value=1.9 Score=31.53 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=20.7
Q ss_pred ccccCcccccccCcccCCCC-cceeecc
Q 024095 155 HVFVDEFSCIGCKNCNNVAP-EVFKIEE 181 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap-~~F~~e~ 181 (272)
.+.++...|++|+.|..+|| +...+.+
T Consensus 31 ~~~i~~~~C~~Cg~C~~~CP~~ai~~~~ 58 (106)
T 7fd1_A 31 FLVIHPDECIDCALCEPECPAQAIFSED 58 (106)
T ss_dssp CEEECTTTCCCCCTTGGGCTTCCEEEGG
T ss_pred cEEECcccCCChhhhHHhCCChhhhccc
Confidence 35577788999999999999 4455544
No 76
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=65.54 E-value=2.8 Score=38.23 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=24.9
Q ss_pred ccCcccc-ccc--CcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCccccccc
Q 024095 157 FVDEFSC-IGC--KNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 157 ~vDe~~C-igC--~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~ 212 (272)
.+|...| .+| +.|..+|| ....++++.+. .+++. ..+..+..++..||.+||..
T Consensus 201 ~id~~~c~~~Ce~~~Cv~~CP~~AI~~~~~~~~-~~id~-~~C~~Cg~C~~~CP~~Ai~~ 258 (366)
T 3mm5_B 201 IPNDEAIRKTCEIPSTVAACPTGALKPDMKNKT-IKVDV-EKCMYCGNCYTMCPGMPLFD 258 (366)
T ss_dssp CCCHHHHHHHCCHHHHHHTCTTCCEEEETTTTE-EEECG-GGCCCCCHHHHHCTTCCCCC
T ss_pred EEcchhccccccccchhccCCccceEecCCCCe-EEEeh-hhCCCcchHHHhCCHhhccc
Confidence 3444444 345 66666666 33444432122 22221 11122345666777766643
No 77
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=56.64 E-value=2.7 Score=39.17 Aligned_cols=22 Identities=27% Similarity=0.751 Sum_probs=16.2
Q ss_pred ccccCcccccccCcccCCCCcc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~~ 176 (272)
.+.+|...|++|++|..+||.-
T Consensus 278 ~~~id~~~Ci~Cg~Ci~~CP~~ 299 (418)
T 3mm5_A 278 ELTIDNRECVRCMHCINKMPKA 299 (418)
T ss_dssp CEEECTTTCCCCCHHHHHCTTT
T ss_pred eeEEChhhcCccChhHHhCcHh
Confidence 4566777788888888888754
No 78
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=55.83 E-value=2.6 Score=38.77 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=9.5
Q ss_pred HHHHHHHhCccccccc
Q 024095 197 FVQQAIESCPVDCIHR 212 (272)
Q Consensus 197 ~i~~Av~~CP~~aI~~ 212 (272)
.+..++..||.+||..
T Consensus 260 ~Cg~C~~~CP~~Ai~~ 275 (386)
T 3or1_B 260 YCGNCYTMCPALPLSD 275 (386)
T ss_dssp CCCHHHHHCTTCCCCC
T ss_pred ccccHHHhCcHhhCcC
Confidence 3445666677666654
No 79
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=54.58 E-value=3.7 Score=29.78 Aligned_cols=59 Identities=15% Similarity=0.249 Sum_probs=32.6
Q ss_pred cccCcccccccCcccCCCCc-ceeecccccceEEccCCCCHHHHHHHHHhCcccccccccch
Q 024095 156 VFVDEFSCIGCKNCNNVAPE-VFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQ 216 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~-~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~ 216 (272)
+.+|...|++|+.|..+||. ...+...... .++.. -..+...--..+||.+++.+.+..
T Consensus 32 ~~~~~~~C~~Cg~C~~~CP~~Ai~~~~~~~~-~~~~~-~~~d~~~~~~~~~~~ga~~~g~~~ 91 (105)
T 2v2k_A 32 LYIHPDECVDCGACEPVCPVEAIYYEDDVPD-QWSSY-AQANADFFAELGSPGGASKVGQTD 91 (105)
T ss_dssp EEECTTTCCCCCCSGGGCTTCCEEEGGGCCG-GGTTH-HHHHHHTTTTTCCCSCHHHHCSCS
T ss_pred EEEeCCcCcchhhHHHhCCccCEEecCCChH-HHHHH-HHhchHHHhhcCCCcceEEeecCC
Confidence 55678889999999999994 3444432100 00000 000111111268999988876544
No 80
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=52.42 E-value=2.3 Score=41.46 Aligned_cols=22 Identities=36% Similarity=0.875 Sum_probs=18.8
Q ss_pred CCccccCcccccccCcccCCCC
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap 174 (272)
....++.|..|||||.|+.-||
T Consensus 45 ~~~~~i~~~~c~~~~~~~~~cp 66 (608)
T 3j16_B 45 SKIAFISEILCIGCGICVKKCP 66 (608)
T ss_dssp TTEEEECTTTCCCCCHHHHHCS
T ss_pred CCceEEehhhccccccccccCC
Confidence 3456788899999999999998
No 81
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=49.96 E-value=3.2 Score=33.07 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=19.0
Q ss_pred ccCcccccccCcccCCCCcc-eeecc
Q 024095 157 FVDEFSCIGCKNCNNVAPEV-FKIEE 181 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~~-F~~e~ 181 (272)
.++...|++|+.|..+||.. ..+.+
T Consensus 92 ~~~~~~C~~C~~C~~~CP~~Ai~~~~ 117 (182)
T 3i9v_9 92 EINMLRCIFCGLCEEACPTGAIVLGY 117 (182)
T ss_dssp EEETTTCCCCCHHHHHCSSSCEEECS
T ss_pred ecCCCcCcChhChhhhCCccceEecC
Confidence 45677899999999999943 44443
No 82
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=47.34 E-value=3 Score=37.98 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=20.2
Q ss_pred CCccccCcccccccCcccCCCCc
Q 024095 153 KDHVFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 153 ~~~v~vDe~~CigC~~C~~~ap~ 175 (272)
...+.+|...|++|+.|..+||.
T Consensus 231 ~~~~~id~~~C~~Cg~C~~~CP~ 253 (366)
T 3mm5_B 231 NKTIKVDVEKCMYCGNCYTMCPG 253 (366)
T ss_dssp TTEEEECGGGCCCCCHHHHHCTT
T ss_pred CCeEEEehhhCCCcchHHHhCCH
Confidence 35677899999999999999996
No 83
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=45.92 E-value=4.4 Score=35.15 Aligned_cols=83 Identities=19% Similarity=0.364 Sum_probs=49.3
Q ss_pred cccCcccCCCC-cceeecccccceEEccCCCCHHHHHHHHHhCcccccccccchhhhhHHHHHhhhhhhceeeecCCCCC
Q 024095 164 IGCKNCNNVAP-EVFKIEEDFGRARVYNQCGINEFVQQAIESCPVDCIHRTSAQQLSLLEDEMRRVERVNVAMMLSGMGS 242 (272)
Q Consensus 164 igC~~C~~~ap-~~F~~e~d~g~a~v~~q~g~~e~i~~Av~~CP~~aI~~~~~~~l~~le~~~~~~~~~~v~~~~~g~g~ 242 (272)
.+|+.|...|| .++.+++ +...+.+. .....+..++..|| ++|......+--.+ .|.- -|.
T Consensus 174 ~~C~~C~~~CP~g~I~id~--~~~v~~d~-~~C~~C~~C~~vCp-~aI~~~~~~d~~i~----------~VEt----~Gs 235 (265)
T 2pa8_D 174 ANCEKAVNVCPEGVFELKD--GKLSVKNE-LSCTLCEECLRYCN-GSIRISFVEDKYIL----------EIES----VGS 235 (265)
T ss_dssp SCCTTHHHHCTTCCEEEET--TEEEESCG-GGCCCCCHHHHHHT-TSEEEEEEEEEEEE----------EEEE----CSS
T ss_pred hhHHHHHHhCcccCeEecC--CeeEEecc-ccCCCchHHHHhCC-CceEEEecCCeEEE----------Eecc----CCC
Confidence 78999999998 6788876 34433321 11122446788899 89887654321111 1221 133
Q ss_pred -CcchhHHHHHHHHHhHHHHHHH
Q 024095 243 -GSADVFRMASSRWERRQAKVLV 264 (272)
Q Consensus 243 -~~~~~f~~~~~~~~~~~~~~~~ 264 (272)
...+.+..|...++..-..+.+
T Consensus 236 l~Pee~v~~A~~iL~~~~~~~~~ 258 (265)
T 2pa8_D 236 LKPERILLEAGKSIIRKIEELEK 258 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888887777666655444
No 84
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=40.64 E-value=4.5 Score=37.15 Aligned_cols=17 Identities=18% Similarity=0.606 Sum_probs=13.9
Q ss_pred HHHHHHhCccccccccc
Q 024095 198 VQQAIESCPVDCIHRTS 214 (272)
Q Consensus 198 i~~Av~~CP~~aI~~~~ 214 (272)
+-.++..||++||.+.+
T Consensus 224 ~~~cv~~CPt~AI~~~~ 240 (386)
T 3or1_B 224 IPLAVAACPTAAVKPIT 240 (386)
T ss_dssp HHHHHHHCTTCCEEEEE
T ss_pred chhhhhhCchhhccccc
Confidence 36789999999999853
No 85
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=39.93 E-value=6.7 Score=36.72 Aligned_cols=23 Identities=26% Similarity=0.670 Sum_probs=19.4
Q ss_pred CccccCcccccccCcccCCCCcc
Q 024095 154 DHVFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap~~ 176 (272)
..+.+|...|+.|++|..+||..
T Consensus 294 ~~l~Id~~~C~~Cg~Ci~~CP~a 316 (437)
T 3or1_A 294 GTLSIDNKNCTRCMHCINTMPRA 316 (437)
T ss_dssp TEEEECGGGCCCCSHHHHHCTTT
T ss_pred CEEEEccccCCchhhhHhhCcHh
Confidence 34667899999999999999964
No 86
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=39.14 E-value=5 Score=31.61 Aligned_cols=25 Identities=16% Similarity=0.434 Sum_probs=19.1
Q ss_pred cccCcccccccCcccCCCCcc-eeec
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV-FKIE 180 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~-F~~e 180 (272)
+.+|...|++|+.|..+||.. ..+.
T Consensus 40 ~~id~~~C~~Cg~Cv~~CP~~AI~~~ 65 (150)
T 1jnr_B 40 YNREPDMCWECYSCVKMCPQGAIDVR 65 (150)
T ss_dssp EESCGGGCCCCCHHHHHCTTCCEEEC
T ss_pred eeeCcccCcCHhHHHHhCCccceEec
Confidence 356778899999999999943 4443
No 87
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=37.47 E-value=5.4 Score=42.19 Aligned_cols=20 Identities=30% Similarity=1.117 Sum_probs=17.5
Q ss_pred cccCcccccccCcccCCCCc
Q 024095 156 VFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~ 175 (272)
+.++...|++||.|..+||.
T Consensus 737 ~~v~~~~C~gCG~Cv~vCP~ 756 (1231)
T 2c42_A 737 IQINTLDCMGCGNCADICPP 756 (1231)
T ss_dssp EEECTTTCCCCCHHHHHCSS
T ss_pred eeechhhCCChhHHHhhCCC
Confidence 34678889999999999997
No 88
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=35.01 E-value=6.4 Score=31.54 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=17.3
Q ss_pred cccCcccccccCcccCCCCcc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~ 176 (272)
+.+|...|++|+.|..+||..
T Consensus 39 ~~~d~~~C~~Cg~Cv~~CP~~ 59 (166)
T 3gyx_B 39 FNQEPEACWECYSCIKICPQG 59 (166)
T ss_dssp EESCGGGCCCCCHHHHHCSSC
T ss_pred EecCcccCcccChHhHhCCcc
Confidence 346778899999999999843
No 89
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=35.01 E-value=12 Score=34.63 Aligned_cols=18 Identities=33% Similarity=0.711 Sum_probs=16.2
Q ss_pred CcccccccCcccCCCCcc
Q 024095 159 DEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 159 De~~CigC~~C~~~ap~~ 176 (272)
|...|++||.|..+||..
T Consensus 62 ~~~~C~~Cg~C~~~CP~~ 79 (421)
T 1hfe_L 62 HIEACINCGQCLTHCPEN 79 (421)
T ss_dssp CGGGCCCCCTTGGGCTTC
T ss_pred ChhhCCchhhHHHhhCcC
Confidence 788899999999999954
No 90
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=34.77 E-value=10 Score=32.73 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=20.4
Q ss_pred cccCcccccccCcccCCCCcceeeccc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEVFKIEED 182 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~F~~e~d 182 (272)
+.+|...|++|+.|..+||..+.+..+
T Consensus 196 v~~d~~~C~~C~~C~~vCp~aI~~~~~ 222 (265)
T 2pa8_D 196 SVKNELSCTLCEECLRYCNGSIRISFV 222 (265)
T ss_dssp EESCGGGCCCCCHHHHHHTTSEEEEEE
T ss_pred EEeccccCCCchHHHHhCCCceEEEec
Confidence 345778899999999999965555543
No 91
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=31.54 E-value=25 Score=27.41 Aligned_cols=32 Identities=13% Similarity=0.199 Sum_probs=28.3
Q ss_pred CcccccCcCCCCCHHHHHHHHHHHHHHhCCCC
Q 024095 71 DYYAVLGLLPDATPEQIKKAYYNCMKACHPDL 102 (272)
Q Consensus 71 d~Y~vLgv~~~a~~~~Ik~ayr~l~~~~HPD~ 102 (272)
-++..|.|....+.+|++++-..+..++|||-
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 34778888888999999999999999999984
No 92
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=31.23 E-value=13 Score=31.23 Aligned_cols=21 Identities=24% Similarity=0.646 Sum_probs=17.0
Q ss_pred cccCcccccccCcccCCCCcc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~ 176 (272)
...+...||+||.|..+||..
T Consensus 142 ~~~~~~~Ci~Cg~C~~~CP~~ 162 (238)
T 2wdq_B 142 KLDGLYECILCACCSTSCPSF 162 (238)
T ss_dssp TTTTTTTCCCCCTTGGGCHHH
T ss_pred HHhccccccccCCchhhCcCC
Confidence 345677899999999999854
No 93
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=30.45 E-value=13 Score=31.58 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=15.7
Q ss_pred cCcccccccCcccCCCCcc
Q 024095 158 VDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 158 vDe~~CigC~~C~~~ap~~ 176 (272)
.+...||+||.|..+||..
T Consensus 153 ~~~~~Ci~CG~C~~~CP~~ 171 (252)
T 2h88_B 153 DGLYECILCACCSTSCPSY 171 (252)
T ss_dssp TTTTTCCCCCTTGGGCHHH
T ss_pred HhHHhchhhCcchhhCCCC
Confidence 4566799999999999853
No 94
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=29.60 E-value=0.96 Score=45.76 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=32.0
Q ss_pred ccCcccccccCcccCCCCcceeeccc-----ccceEEccC-CCCHHHHHHHHHhCccccccc
Q 024095 157 FVDEFSCIGCKNCNNVAPEVFKIEED-----FGRARVYNQ-CGINEFVQQAIESCPVDCIHR 212 (272)
Q Consensus 157 ~vDe~~CigC~~C~~~ap~~F~~e~d-----~g~a~v~~q-~g~~e~i~~Av~~CP~~aI~~ 212 (272)
..+...|++|+.|..+||....+.+- .|....+.. ...+..+..++..||++++..
T Consensus 411 ~~~~~~Ci~CG~C~~~CP~~~~~~~il~~~~~G~~~~~~~~~~~Ci~Cg~C~~vCP~ga~~~ 472 (807)
T 3cf4_A 411 VNMVAKCADCGACLLACPEEIDIPEAMGFAKKGDFSYFEEIHDTCIGCRRCEQVCKKEIPIL 472 (807)
T ss_dssp HHHHHHCCCCCHHHHHCTTCCCHHHHHHHHHTTCTHHHHHHHHHCCCCCHHHHHCTTCCCHH
T ss_pred HHhHHhCCCCCchhhhCCCCCchHHHHHHHHcCChhhhhhchhhccchhhHHHhCCCCCChH
Confidence 34667899999999999976543210 011000000 000112347889999988764
No 95
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=25.39 E-value=11 Score=36.54 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=16.8
Q ss_pred CccccCcccccccCcccCCCC
Q 024095 154 DHVFVDEFSCIGCKNCNNVAP 174 (272)
Q Consensus 154 ~~v~vDe~~CigC~~C~~~ap 174 (272)
...++.+..|+|||.|...||
T Consensus 60 ~~~~i~e~~c~gc~~~~~~~p 80 (607)
T 3bk7_A 60 YKPIIQEASCTGCGICVHKCP 80 (607)
T ss_dssp TEEEECTTTCCCCCHHHHHCS
T ss_pred CcceeeecccCccccccCCCC
Confidence 456677889999999987666
No 96
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=24.72 E-value=12 Score=35.91 Aligned_cols=21 Identities=24% Similarity=0.770 Sum_probs=18.2
Q ss_pred ccccCcccccccCcccCCCCc
Q 024095 155 HVFVDEFSCIGCKNCNNVAPE 175 (272)
Q Consensus 155 ~v~vDe~~CigC~~C~~~ap~ 175 (272)
.+.+|...|+.||.|...||.
T Consensus 545 ~~~i~~~~Ci~C~~C~~~cp~ 565 (584)
T 2gmh_A 545 RLQINAQNCVHCKTCDIKDPS 565 (584)
T ss_dssp EEEECGGGCCCCCHHHHHCTT
T ss_pred EEEEeCCCCcCCCCchhhCCC
Confidence 466888899999999999983
No 97
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=24.36 E-value=10 Score=31.99 Aligned_cols=21 Identities=24% Similarity=0.621 Sum_probs=17.2
Q ss_pred cccCcccccccCcccCCCCcc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~ 176 (272)
...+...||+||.|..+||..
T Consensus 141 ~~~~~~~Ci~Cg~C~~~CP~~ 161 (243)
T 1kf6_B 141 KYHQFSGCINCGLCYAACPQF 161 (243)
T ss_dssp TTGGGGCCCCCCHHHHHCHHH
T ss_pred HhhhhhhccccCccccccCCC
Confidence 346778899999999999853
No 98
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=22.39 E-value=25 Score=30.82 Aligned_cols=17 Identities=29% Similarity=0.933 Sum_probs=14.3
Q ss_pred ccccccCcccCCCCcce
Q 024095 161 FSCIGCKNCNNVAPEVF 177 (272)
Q Consensus 161 ~~CigC~~C~~~ap~~F 177 (272)
..||.||.|..+||-.-
T Consensus 180 ~~CI~CG~C~~aCP~~~ 196 (282)
T 3vr8_B 180 YECILCACCSASCPSYW 196 (282)
T ss_pred hhCcccCcCcccCCcee
Confidence 45999999999999653
No 99
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=21.99 E-value=15 Score=35.34 Aligned_cols=21 Identities=24% Similarity=0.588 Sum_probs=17.6
Q ss_pred cccCcccccccCcccCCCCcc
Q 024095 156 VFVDEFSCIGCKNCNNVAPEV 176 (272)
Q Consensus 156 v~vDe~~CigC~~C~~~ap~~ 176 (272)
..+|...|++||.|..+||..
T Consensus 183 ~~i~~~~Ci~Cg~Cv~~CP~g 203 (574)
T 3c8y_A 183 KCFDDTNCLLCGQCIIACPVA 203 (574)
T ss_dssp CCGGGSSCCCCCHHHHHCSST
T ss_pred ceechhhCCcchhHHHhhccC
Confidence 456788899999999999943
No 100
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.78 E-value=98 Score=20.44 Aligned_cols=48 Identities=13% Similarity=0.297 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHH---HHHHHHhcC-cc-ccchhccc
Q 024095 85 EQIKKAYYNCMKACHPDLSGDDPETTNFCMFI---NEVYAVLSD-PV-QRMVYDEI 135 (272)
Q Consensus 85 ~~Ik~ayr~l~~~~HPD~~~~~~~~~~~f~~i---~~Ay~vLsd-~~-~R~~YD~~ 135 (272)
+|..++|.+|.+...=|-.-+ =++....| ..-|.+|.| |. ++..|+.|
T Consensus 3 eEae~aF~~lL~~~~V~s~ws---weqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWS---FSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCC---HHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCc---HHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 577899999999886554444 23333444 458999997 66 55567765
Done!