BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024096
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KP9|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KP9|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1, Apo-Form
pdb|1KPH|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
pdb|1KPH|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Dddmab
Length = 287
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 13/247 (5%)
Query: 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
TYSCA F+ + L+ Q+ K+ + + K + G +LD+GCGWG + V++
Sbjct: 32 TYSCAYFERDDMTLQEAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVV 91
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEE 121
G+TLS+ Q + + V + R L + Q + DRI+S G EH GH+ +
Sbjct: 92 GLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDE--PVDRIVSIGAFEHFGHERYDA 149
Query: 122 FFGCCESLLATHGLLVLQFISA--PDQCYDE-------YRLSPGFIKEYIFPGGCLPSLG 172
FF LL G+++L I+ P + ++ + FI IFPGG LPS+
Sbjct: 150 FFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209
Query: 173 RVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFD 232
V S++G V ++++ HY +TL W + + +AL E + R + Y
Sbjct: 210 MVQEC-ASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQSEEVYER-YMKYLT 267
Query: 233 YCAASFK 239
CA F+
Sbjct: 268 GCAEMFR 274
>pdb|1KPG|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|C Chain C, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
pdb|1KPG|D Chain D, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa1 Complexed With Sah And Ctab
Length = 287
Score = 113 bits (283), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 115/247 (46%), Gaps = 13/247 (5%)
Query: 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
TYSCA F+ + L+ Q+ K+ + + K + G +LD+GCGWG V++
Sbjct: 32 TYSCAYFERDDXTLQEAQIAKIDLALGKLGLQPGXTLLDVGCGWGATXXRAVEKYDVNVV 91
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEE 121
G+TLS+ Q + + V + R L + Q + DRI+S G EH GH+ +
Sbjct: 92 GLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDE--PVDRIVSIGAFEHFGHERYDA 149
Query: 122 FFGCCESLLATHGLLVLQFISA--PDQCYDE-------YRLSPGFIKEYIFPGGCLPSLG 172
FF LL G+ +L I+ P + ++ + FI IFPGG LPS+
Sbjct: 150 FFSLAHRLLPADGVXLLHTITGLHPKEIHERGLPXSFTFARFLKFIVTEIFPGGRLPSIP 209
Query: 173 RVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFD 232
V S++G V ++++ HY +TL W + + +AL E + R + Y
Sbjct: 210 XVQEC-ASANGFTVTRVQSLQPHYAKTLDLWSAALQANKGQAIALQSEEVYER-YXKYLT 267
Query: 233 YCAASFK 239
CA F+
Sbjct: 268 GCAEXFR 274
>pdb|1TPY|A Chain A, Structure Of The Cyclopropane Synthase Mmaa2 From
Mycobacterium Tuberculosis
Length = 287
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/260 (29%), Positives = 117/260 (45%), Gaps = 13/260 (5%)
Query: 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
TYSCA F+ E LE Q+ K+ + + K + G +LDIGCGWG + Q
Sbjct: 32 TYSCAHFEREDMTLEEAQIAKIDLALGKLGLQPGMTLLDIGCGWGATMRRAIAQYDVNVV 91
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEE 121
G+TLS+ Q + + E R L + Q + DRI+S G EH GHD +
Sbjct: 92 GLTLSKNQAAHVQKSFDEMDTPRDRRVLLAGWEQFNEP--VDRIVSIGAFEHFGHDRHAD 149
Query: 122 FFGCCESLLATHGLLVLQFISA-PDQCYDEYRLSPG--------FIKEYIFPGGCLPSLG 172
FF +L G+L+L I+ Q ++ L FI IFPGG P++
Sbjct: 150 FFARAHKILPPDGVLLLHTITGLTRQQMVDHGLPLTLWLARFLKFIATEIFPGGQPPTIE 209
Query: 173 RVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFD 232
V ++ +G + +++ HY +TL W + +SE +A+ E + R + Y
Sbjct: 210 MV-EEQSAKTGFTLTRRQSLQPHYARTLDLWAEALQEHKSEAIAIQSEEVYER-YMKYLT 267
Query: 233 YCAASFKSRIIGDYQIVFSR 252
CA F+ I Q ++
Sbjct: 268 GCAKLFRVGYIDVNQFTLAK 287
>pdb|1L1E|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
pdb|1L1E|B Chain B, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Pcaa Complexed With S-Adenosyl-L-Homocysteine
Length = 287
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 106/249 (42%), Gaps = 17/249 (6%)
Query: 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
TYSCA F+ + L+ Q+ K+ + + K + G +LDIGCGWG +++
Sbjct: 32 TYSCAYFERDDMTLQEAQIAKIDLALGKLNLEPGMTLLDIGCGWGATMRRAIEKYDVNVV 91
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEE 121
G+TLSE Q + + + R L + + + DRI+S G EH GH
Sbjct: 92 GLTLSENQAGHVQKMFDQMDTPRSRRVLLEGWEKFDEP--VDRIVSIGAFEHFGHQRYHH 149
Query: 122 FFGCCESLLATHGLLVLQFISAPDQCYDEYRLS-----------PGFIKEYIFPGGCLPS 170
FF L G ++L I P + E R FI IFPGG LPS
Sbjct: 150 FFEVTHRTLPADGKMLLHTIVRP--TFKEGREKGLTLTHELVHFTKFILAEIFPGGWLPS 207
Query: 171 LGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYY 230
+ V G V ++++ +HY +TL W + + +A+ + R + Y
Sbjct: 208 IPTV-HEYAEKVGFRVTAVQSLQLHYARTLDMWATALEANKDQAIAIQSQTVYDR-YMKY 265
Query: 231 FDYCAASFK 239
CA F+
Sbjct: 266 LTGCAKLFR 274
>pdb|2FK7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis, Apo- Form
pdb|2FK8|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylmethionine
pdb|3HA3|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With S-Adenosylhomocysteine
pdb|3HA5|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With Sinefungin
pdb|3HA7|A Chain A, Crystal Structure Of Hma (Mmaa4) From Mycobacterium
Tuberculosis Complexed With
S-Adenosyl-N-Decyl-Aminoethyl (Sadae)
Length = 318
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 112/269 (41%), Gaps = 21/269 (7%)
Query: 2 TYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
TYSCA F+ LE Q KV + ++K + G +LDIGCGWGT V++
Sbjct: 58 TYSCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVI 117
Query: 62 GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEE 121
G+TLS+ Q E + + L + A DRI+S EH GH+ ++
Sbjct: 118 GLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEAFEHFGHENYDD 175
Query: 122 FFGCCESLLATHGLLVLQFISAPDQCYDEYRLSP-------------GFIKEYIFPGGCL 168
FF C +++ G + +Q Y Y ++ FI IFPGG L
Sbjct: 176 FFKRCFNIMPADGRMTVQ----SSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL 231
Query: 169 PSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWE 228
PS + +G V ++ HY +TLR W + + + + E + R +
Sbjct: 232 PST-EMMVEHGEKAGFTVPEPLSLRPHYIKTLRIWGDTLQSNKDKAIEVTSEEVYNR-YM 289
Query: 229 YYFDYCAASFKSRIIGDYQIVFSRPGKVA 257
Y C F ++ + + +PG A
Sbjct: 290 KYLRGCEHYFTDEMLDCSLVTYLKPGAAA 318
>pdb|1KPI|A Chain A, Crystal Structure Of Mycolic Acid Cyclopropane Synthase
Cmaa2 Complexed With Sah And Dddmab
pdb|3HEM|A Chain A, Structure Of Mycobacterium Tuberculosis Mycolic Acid
Cyclopropane Synthase Cmaa2 In Complex With Dioctylamine
Length = 302
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/257 (28%), Positives = 111/257 (43%), Gaps = 20/257 (7%)
Query: 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKY 60
MTYSCA F+ LE Q K + ++K + G +LDIGCGWG+ V +
Sbjct: 39 MTYSCAYFERPDMTLEEAQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNV 98
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH------- 113
G+TLSE Q + + E + + + + DRI+S G EH
Sbjct: 99 IGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP--VDRIVSLGAFEHFADGAGD 156
Query: 114 VGHDYMEEFFGCCESLLATHGLLVLQFISAPD--QCYDEYRLSP-------GFIKEYIFP 164
G + + FF +L G ++L I+ PD + + SP FI IFP
Sbjct: 157 AGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP 216
Query: 165 GGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFI 224
GG LP + +V +S++G VE IG +Y TL W + E +AL E
Sbjct: 217 GGRLPRISQV-DYYSSNAGWKVERYHRIGANYVPTLNAWADALQAHKDEAIALKGQET-C 274
Query: 225 RTWEYYFDYCAASFKSR 241
+ +Y C+ F+ +
Sbjct: 275 DIYMHYLRGCSDLFRDK 291
>pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Sam
pdb|4F85|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase
pdb|4F86|A Chain A, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|B Chain B, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|C Chain C, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|D Chain D, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|E Chain E, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|F Chain F, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|G Chain G, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|H Chain H, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|I Chain I, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|J Chain J, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|K Chain K, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
pdb|4F86|L Chain L, Structure Analysis Of Geranyl Diphosphate
Methyltransferase In Complex With Gpp And Sinefungin
Length = 320
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91
V G ++D GCG G + ++ GCK G+TLS Q ++ + RE G+ DH+R +C
Sbjct: 123 VGPGDTLVDAGCGRGGSMVMAHQRFGCKVEGVTLSAAQAEFGNRRARELGIDDHVRSRVC 182
Query: 92 DYRQLP 97
+ P
Sbjct: 183 NMLDTP 188
>pdb|3BUS|A Chain A, Crystal Structure Of Rebm
pdb|3BUS|B Chain B, Crystal Structure Of Rebm
Length = 273
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91
V G VLD+GCG G A+ + + TGI++S Q+ A + AGL + + F
Sbjct: 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA 118
Query: 92 DYRQLP 97
D LP
Sbjct: 119 DAXDLP 124
>pdb|3D2L|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|C Chain C, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
pdb|3D2L|D Chain D, Crystal Structure Of Sam-Dependent Methyltransferase
(Zp_00538691.1) From Exiguobacterium Sp. 255-15 At 1.90
A Resolution
Length = 243
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
+V G+ + DIGCG GT + + + TG+ LSEE L+ A+ K E H+ F++
Sbjct: 30 QVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEXLEIAQEKAXETNR--HVDFWV 85
Query: 91 CDYRQLPKANKYDRI-ISCGMIEHVGHDY-MEEFFGCCESLLATHGLLVLQFIS 142
D R+L D I I C + ++ + +++ F LL G L+ S
Sbjct: 86 QDXRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHS 139
>pdb|2P8J|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
pdb|2P8J|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase (Np_349143.1) From Clostridium
Acetobutylicum At 2.00 A Resolution
Length = 209
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 38 VLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97
VLD G G + I + G K GI +S+ QLK AE RE + +I D R+LP
Sbjct: 27 VLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNIS--KGDIRKLP 84
Query: 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE 150
K + S G I H + ++E + +L GL + F++ D+ Y++
Sbjct: 85 FKDESXSFVYSYGTIFHXRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNK 138
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 8 FKSEHEDLEVGQMRK-VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 66
FK++ G++ K +L+E V K ++LD+GCG+G + I + + T ++
Sbjct: 25 FKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKS-TTXADIN 83
Query: 67 EEQLKYAEIKVREAGLQDH-IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGC 125
+K A+ ++ L ++ IR D + K KY++II+ I G + +
Sbjct: 84 RRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI-RAGKEVLHRIIEE 142
Query: 126 CESLLATHG 134
+ LL +G
Sbjct: 143 GKELLKDNG 151
>pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC1|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|A Chain A, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|B Chain B, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|C Chain C, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|D Chain D, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|E Chain E, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|F Chain F, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|G Chain G, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|H Chain H, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|I Chain I, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|J Chain J, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|K Chain K, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
pdb|3VC2|L Chain L, Crystal Structure Of Geranyl Diphosphate
C-Methyltransferase From Streptomyces Coelicolor A3(2)
In Complex With Mg2+, Geranyl Diphosphate, And
S-Adenosyl-L-Homocysteine
Length = 312
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 38 VLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97
++D GCG G + ++ G + G+TLS Q + + RE + DH+R +C+ P
Sbjct: 121 LVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP 180
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ + E+LDIGCG G +++E+ + G TGI ++ E ++ AE R GL
Sbjct: 28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLN 78
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 33 SKGQEVLDIGCGWGTL-AIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91
++ ++LD+G G G L A + K +T + +SE+ L+ A+ + R L+ +++
Sbjct: 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR-GNLK--VKYIEA 99
Query: 92 DYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137
DY + KYD ++S I H+ + +E + S+L G+ +
Sbjct: 100 DYSKYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFI 145
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95
+ VLDIGCG G +E+ K+ G + G+ ++E+ +K+ E K D I + +
Sbjct: 43 RRVLDIGCGRGEF-LELCKEEGIESIGVDINEDMIKFCEGKFNVVK-SDAIEY----LKS 96
Query: 96 LPKANKY-DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
LP +KY D ++ +EH+ + + E C S + +V++
Sbjct: 97 LP--DKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIE 139
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 39 LDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98
+DIG G G L+I + KQ+ + S+ + A + +A L D I+ D +P
Sbjct: 48 IDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQGDVHNIPI 107
Query: 99 ANKY-DRIISCGMI 111
+ Y D I+S G +
Sbjct: 108 EDNYADLIVSRGSV 121
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95
+ VLD+ CG G +E+ ++ G + G+ L EE L+ A K +E L+ I F D +
Sbjct: 43 RRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNLK--IEFLQGDVLE 99
Query: 96 LPKANKYDRI-ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140
+ N++D + + I + + + + F L G+ + F
Sbjct: 100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145
>pdb|3BXO|A Chain A, Crystal Structure Of Streptomyces Venezuelae Desvi
pdb|3BXO|B Chain B, Crystal Structure Of Streptomyces Venezuelae Desvi
Length = 239
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 13/127 (10%)
Query: 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88
++R + +LD+ CG GT K+ G G+ LSE+ L +A ++ +A L
Sbjct: 35 RSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPDATL------ 87
Query: 89 YLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH----GLLVLQFISAP 144
+ D R K+ ++S M VG+ E G + A H G++V++ P
Sbjct: 88 HQGDMRDFRLGRKFSAVVS--MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145
Query: 145 DQCYDEY 151
+ D +
Sbjct: 146 ETFADGW 152
>pdb|3TMA|A Chain A, Crystal Structure Of Trmn From Thermus Thermophilus
Length = 354
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 61/155 (39%), Gaps = 26/155 (16%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCK---YTGITLSEEQLKYAEIKVREAG 81
L+ A G VLD G GT+A+E G Y G L E++L A +G
Sbjct: 194 ALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAG-DLDEKRLGLAREAALASG 252
Query: 82 LQDHIRFYLCDYRQLPK-ANKYDRIIS-------CGMIEHVGHDYMEEFFGCCESLLATH 133
L IRF D R LP+ + DRI++ G E + H Y +F +LL
Sbjct: 253 L-SWIRFLRADARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYW-DFLRGALALLPPG 310
Query: 134 GLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCL 168
G + L L P +K + PG L
Sbjct: 311 GRVAL------------LTLRPALLKRALPPGFAL 333
>pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 15/143 (10%)
Query: 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEI-VKQTGCKYTGITLSEEQLKYAEIKVREAGL 82
+ +IE A + G VLD CG GT+ IE+ +++ + GI + L AE+ AG+
Sbjct: 208 NAMIELAELDGGS-VLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGV 266
Query: 83 QDHIRFYLCDYRQLPK-ANKYDRIIS-------CGMIEHVGHDYMEEFFGCCESLLATHG 134
D I+F D QL + + D IS G + YM +FF +L G
Sbjct: 267 LDKIKFIQGDATQLSQYVDSVDFAISNLPYGLKIGKKSMIPDLYM-KFFNELAKVLEKRG 325
Query: 135 LLVLQFISAPDQCYDEYRLSPGF 157
+ FI+ + +E GF
Sbjct: 326 V----FITTEKKAIEEAIAENGF 344
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90
R +KG LD+G G+G A +V++ G + ++ Q K E +AGL D+I
Sbjct: 82 RQAKG---LDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY 138
Query: 91 CDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESL 129
+ ++P + N YD I S H D ++ F C L
Sbjct: 139 GSFLEIPCEDNSYDFIWSQDAFLH-SPDKLKVFQECARVL 177
>pdb|1NKV|A Chain A, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|B Chain B, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
pdb|1NKV|C Chain C, X-Ray Structure Of Yjhp From E.Coli Northeast Structural
Genomics Research Consortium (Nesg) Target Er13
Length = 256
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 46/125 (36%), Gaps = 6/125 (4%)
Query: 7 IFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS 66
I +SEH K + L R G +LD+G G G + G TGI S
Sbjct: 9 ISESEHRIHNPFTEEKYATLGRVLRXKPGTRILDLGSGSGEXLCTWARDHGITGTGIDXS 68
Query: 67 EEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCC 126
A+ + E G+ + + F D A Y C + VG ++ F
Sbjct: 69 SLFTAQAKRRAEELGVSERVHFIHND------AAGYVANEKCDVAACVGATWIAGGFAGA 122
Query: 127 ESLLA 131
E LLA
Sbjct: 123 EELLA 127
>pdb|2EX4|A Chain A, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
pdb|2EX4|B Chain B, Crystal Structure Of Human Methyltransferase Ad-003 In
Complex With S-adenosyl-l-homocysteine
Length = 241
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Query: 39 LDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ--L 96
LD G G G + ++ + + ++E+ L A+ + E G +R Y C Q
Sbjct: 84 LDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG--KRVRNYFCCGLQDFT 141
Query: 97 PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
P+ + YD I +I H+ ++ EF C+ L +G++V++
Sbjct: 142 PEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK 184
>pdb|1Y8C|A Chain A, Crystal Structure Of A S-Adenosylmethionine-Dependent
Methyltransferase From Clostridium Acetobutylicum Atcc
824
Length = 246
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95
+ LD+ CG G L + + + + LS+E L AE K R GL+ R D
Sbjct: 39 DDYLDLACGTGNLTENLCPKFKNTW-AVDLSQEXLSEAENKFRSQGLK--PRLACQDISN 95
Query: 96 LPKANKYDRIISCGMIEH--VGHDYMEEFFGCCESLLATHGLLVLQFIS 142
L K+D I C + + D ++++F + L G+ + S
Sbjct: 96 LNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINS 144
>pdb|2Y1W|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1W|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|A Chain A, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|B Chain B, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|C Chain C, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
pdb|2Y1X|D Chain D, Crystal Structure Of Coactivator Associated Arginine
Methyltransferase 1 (Carm1) In Complex With Sinefungin
And Indole Inhibitor
Length = 348
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
K + VLD+GCG G L+ Q G + + ++AE+ V+ L D I
Sbjct: 50 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV 108
Query: 94 RQLPKANKYDRIISCGM 110
++ + D IIS M
Sbjct: 109 EEVSLPEQVDIIISEPM 125
>pdb|3B3J|A Chain A, The 2.55 A Crystal Structure Of The Apo Catalytic Domain
Of Coactivator-Associated Arginine Methyl Transferase
I(Carm1:28-507, Residues 28-146 And 479-507 Not Ordered)
Length = 480
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
K + VLD+GCG G L+ Q G + + ++AE+ V+ L D I
Sbjct: 158 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV 216
Query: 94 RQLPKANKYDRIISCGM 110
++ + D IIS M
Sbjct: 217 EEVSLPEQVDIIISEPM 233
>pdb|2V74|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|D Chain D, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|F Chain F, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V74|H Chain H, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), In Complex With S-Adenosyl-
Homocysteine
pdb|2V7E|A Chain A, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
pdb|2V7E|B Chain B, Crystal Structure Of Coactivator-Associated Arginine
Methyltransferase 1 (Carm1), Unliganded
Length = 346
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
K + VLD+GCG G L+ Q G + + ++AE+ V+ L D I
Sbjct: 41 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV 99
Query: 94 RQLPKANKYDRIISCGM 110
++ + D IIS M
Sbjct: 100 EEVSLPEQVDIIISEPM 116
>pdb|3SR4|A Chain A, Crystal Structure Of Human Dot1l In Complex With A
Selective Inhibitor
Length = 351
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT-GITLSEEQLKYAEIKVRE 79
V+ +I++ +++ +D+G G G + +++ T CK+ G+ ++ KYAE RE
Sbjct: 144 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 201
>pdb|4ER3|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Epz004777
Length = 352
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT-GITLSEEQLKYAEIKVRE 79
V+ +I++ +++ +D+G G G + +++ T CK+ G+ ++ KYAE RE
Sbjct: 145 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 202
>pdb|4IKP|A Chain A, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|B Chain B, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|C Chain C, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
pdb|4IKP|D Chain D, Crystal Structure Of Coactivator-associated Arginine
Methyltransferase 1
Length = 341
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
K + VLD+GCG G L+ Q G + + ++AE+ V+ L D I
Sbjct: 45 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV 103
Query: 94 RQLPKANKYDRIISCGM 110
++ + D IIS M
Sbjct: 104 EEVSLPEQVDIIISEPM 120
>pdb|3B3F|A Chain A, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|B Chain B, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|C Chain C, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3F|D Chain D, The 2.2 A Crystal Structure Of The Catalytic Domain Of
Coactivator- Associated Arginine Methyl Transferase
I(Carm1,142-478), In Complex With S-Adenosyl
Homocysteine
pdb|3B3G|A Chain A, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480).
pdb|3B3G|B Chain B, The 2.4 A Crystal Structure Of The Apo Catalytic Domain Of
Coactivator-associated Arginine Methyl Transferase
I(carm1,140-480)
Length = 341
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93
K + VLD+GCG G L+ Q G + + ++AE+ V+ L D I
Sbjct: 46 KDKIVLDVGCGSGILSF-FAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKV 104
Query: 94 RQLPKANKYDRIISCGM 110
++ + D IIS M
Sbjct: 105 EEVSLPEQVDIIISEPM 121
>pdb|3UWP|A Chain A, Crystal Structure Of Dot1l In Complex With
5-Iodotubercidin
Length = 438
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT-GITLSEEQLKYAEIKVRE 79
V+ +I++ +++ +D+G G G + +++ T CK+ G+ ++ KYAE RE
Sbjct: 162 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 219
>pdb|3SX0|A Chain A, Crystal Structure Of Dot1l In Complex With A Brominated
Sah Analog
pdb|4EQZ|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed2
pdb|4ER0|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Fed1
pdb|4ER7|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0947
Length = 421
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT-GITLSEEQLKYAEIKVRE 79
V+ +I++ +++ +D+G G G + +++ T CK+ G+ ++ KYAE RE
Sbjct: 145 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 202
>pdb|3QOW|A Chain A, Dot1l Structure In Complex With Sam
pdb|3QOX|A Chain A, Dot1l Structure In Complex With Sah
Length = 426
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT-GITLSEEQLKYAEIKVRE 79
V+ +I++ +++ +D+G G G + +++ T CK+ G+ ++ KYAE RE
Sbjct: 154 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 211
>pdb|1NW3|A Chain A, Structure Of The Catalytic Domain Of Human Dot1l, A
Non-Set Domain Nucleosomal Histone Methyltransferase
Length = 416
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT-GITLSEEQLKYAEIKVRE 79
V+ +I++ +++ +D+G G G + +++ T CK+ G+ ++ KYAE RE
Sbjct: 144 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 201
>pdb|4EK9|A Chain A, Crystal Structure Of Dot1l In Complex With Epz000004
pdb|4EKG|A Chain A, Crystal Structure Of Dot1l In Complex With Epz003696
pdb|4EKI|A Chain A, Crystal Structure Of Dot1l In Complex With Epz004777
Length = 425
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT-GITLSEEQLKYAEIKVRE 79
V+ +I++ +++ +D+G G G + +++ T CK+ G+ ++ KYAE RE
Sbjct: 153 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 210
>pdb|4ER5|A Chain A, Crystal Structure Of Human Dot1l In Complex With 2
Molecules Of Epz004777
pdb|4ER6|A Chain A, Crystal Structure Of Human Dot1l In Complex With Inhibitor
Sgc0946
Length = 413
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT-GITLSEEQLKYAEIKVRE 79
V+ +I++ +++ +D+G G G + +++ T CK+ G+ ++ KYAE RE
Sbjct: 145 VAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 202
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 32 VSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89
V K EVLD+GC G+GT + +TG K G+ +SE ++ K +E G + F
Sbjct: 51 VKKEAEVLDVGCGDGYGTYKL---SRTGYKAVGVDISEVXIQ----KGKERGEGPDLSFI 103
Query: 90 LCDYRQLPKAN-KYDRIISCGMIE 112
D LP N +++ I + +E
Sbjct: 104 KGDLSSLPFENEQFEAIXAINSLE 127
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 11/147 (7%)
Query: 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV 77
G + ++ +++ +VLDIG G G + I ++ G GI + + A +V
Sbjct: 39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV 98
Query: 78 REAGLQDHIRFYLCDY--RQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGL 135
+G + I F D ++ P+ N +D I S I H+ + + F C L G
Sbjct: 99 --SG-NNKIIFEANDILTKEFPE-NNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGT 154
Query: 136 LVLQFISAPDQCYDEYRLSPGFIKEYI 162
L++ D C E KEY+
Sbjct: 155 LLI-----TDYCATEKENWDDEFKEYV 176
>pdb|3CC8|A Chain A, Crystal Structure Of A Putative Methyltransferase
(Bce_1332) From Bacillus Cereus Atcc 10987 At 1.64 A
Resolution
Length = 230
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95
+EVLDIGC G L I K+ G + +GI E + A+ K+ DH+ +
Sbjct: 34 KEVLDIGCSSGALGAAI-KENGTRVSGIEAFPEAAEQAKEKL------DHVVLGDIETXD 86
Query: 96 LP-KANKYDRIISCGMIEHV 114
P + ++D +I ++EH+
Sbjct: 87 XPYEEEQFDCVIFGDVLEHL 106
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine Methyltransferase
From Plasmodium Falciparum In Complex With Amodiaquine
Length = 266
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 11/147 (7%)
Query: 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV 77
G + ++ +++ +VLDIG G G + I ++ G GI + + A +V
Sbjct: 39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV 98
Query: 78 REAGLQDHIRFYLCDY--RQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGL 135
+G + I F D ++ P+ N +D I S I H+ + + F C L G
Sbjct: 99 --SG-NNKIIFEANDILTKEFPE-NNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGT 154
Query: 136 LVLQFISAPDQCYDEYRLSPGFIKEYI 162
L++ D C E KEY+
Sbjct: 155 LLI-----TDYCATEKENWDDEFKEYV 176
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 12 HEDLEVGQMRKVS---VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEE 68
HE++ ++R S + + + K + VLD+GCG G L++ K K G+ SE
Sbjct: 39 HEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEI 98
Query: 69 QLKYAEIKVREAGLQDHIRFYLCDYRQ--LPKANKYDRIIS 107
+ +I +R L+D I + LP K D IIS
Sbjct: 99 LYQAMDI-IRLNKLEDTITLIKGKIEEVHLP-VEKVDVIIS 137
>pdb|2AZT|A Chain A, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
pdb|2AZT|B Chain B, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
Length = 295
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 73
Q VLD+ CG G +I +V++ G T + S++ LKYA
Sbjct: 59 QRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYA 95
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 11/147 (7%)
Query: 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV 77
G + ++ +++ +VLDIG G G I ++ G GI + + A +V
Sbjct: 39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCXYINEKYGAHTHGIDICSNIVNXANERV 98
Query: 78 REAGLQDHIRFYLCDY--RQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGL 135
+G + I F D ++ P+ N +D I S I H+ + + F C L G
Sbjct: 99 --SG-NNKIIFEANDILTKEFPE-NNFDLIYSRDAILHLSLENKNKLFQKCYKWLKPTGT 154
Query: 136 LVLQFISAPDQCYDEYRLSPGFIKEYI 162
L++ D C E KEY+
Sbjct: 155 LLI-----TDYCATEKENWDDEFKEYV 176
>pdb|1R74|A Chain A, Crystal Structure Of Human Glycine N-Methyltransferase
pdb|1R74|B Chain B, Crystal Structure Of Human Glycine N-Methyltransferase
Length = 294
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 73
Q VLD+ CG G +I +V++ G T + S++ LKYA
Sbjct: 58 QRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYA 94
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 12 HEDLEVGQMRKVS---VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEE 68
HE++ +R +S +I+ + K + VLD+GCG G L++ K G+ +S
Sbjct: 13 HEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-S 71
Query: 69 QLKYAEIKVREAGLQDHI 86
++ A+ V G D I
Sbjct: 72 IIEMAKELVELNGFSDKI 89
>pdb|4HC4|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like Protein 6 (S.
Cerevisiae)
Length = 376
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 3 YSCAIFKSEHEDLEVGQMR----KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC 58
Y C S HE++ ++R ++ +L A + +G+ VLD+G G G L+I Q G
Sbjct: 49 YECYSDVSVHEEMIADRVRTDAYRLGILRNWAAL-RGKTVLDVGAGTGILSI-FCAQAGA 106
Query: 59 KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDY 118
+ + + A VR GL+D + + + D I+S M + H+
Sbjct: 107 RRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLLHES 166
Query: 119 M 119
M
Sbjct: 167 M 167
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 38 VLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97
+ DIGCG G + + TG+ + R++GLQ+ + + LP
Sbjct: 50 IADIGCGTGGQTXVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSXDDLP 109
Query: 98 KAN-KYDRIISCGMIEHVG 115
N + D I S G I ++G
Sbjct: 110 FRNEELDLIWSEGAIYNIG 128
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 25 VLIEKA-----RVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYA 73
VL+E+A R G V+D+G G G +A+ I G T + LS + L A
Sbjct: 16 VLVEEAIRFLKRXPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSXDALAVA 70
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ G +VLD+G G G LAI ++ G K G+ + L AE + G++
Sbjct: 118 LRPGDKVLDLGTGSGVLAI-AAEKLGGKALGVDIDPMVLPQAEANAKRNGVR 168
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ 83
+ G +VLD+G G G LAI ++ G K G+ + L AE + G++
Sbjct: 118 LRPGDKVLDLGTGSGVLAI-AAEKLGGKALGVDIDPMVLPQAEANAKRNGVR 168
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 30.8 bits (68), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYT 61
++R VS I K ++K V+D+GCG G +EI K+ CK+
Sbjct: 22 EIRAVS--IGKLNLNKDDVVVDVGCGSGGXTVEIAKR--CKFV 60
>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|B Chain B, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|C Chain C, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
pdb|1VL5|D Chain D, Crystal Structure Of A Putative Methyltransferase (Bh2331)
From Bacillus Halodurans C-125 At 1.95 A Resolution
Length = 260
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL 82
++ L + A + +EVLD+ G G +A K L+E+ LK A + G
Sbjct: 26 LAKLXQIAALKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGH 84
Query: 83 QDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142
Q + + D Q P ++ I++C + H F +L G L+L S
Sbjct: 85 Q-QVEYVQGDAEQXPFTDERFHIVTCRIAAH-HFPNPASFVSEAYRVLKKGGQLLLVDNS 142
Query: 143 APDQ 146
AP+
Sbjct: 143 APEN 146
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 74/199 (37%), Gaps = 26/199 (13%)
Query: 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80
RK I + ++ ++ DIGCG G + + + TGI L + ++ +A
Sbjct: 35 RKAVSFINE--LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKA 92
Query: 81 GLQDHIRFYLCDYRQLPKAN-KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
D ++ LP N + D I S G I ++G E L G + +
Sbjct: 93 NCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVS 149
Query: 140 FISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG----IH 195
S + R P I+++ P + + + C++ +E G H
Sbjct: 150 EAS----WFTSER--PAEIEDFWM--DAYPEISVIPT--------CIDKMERAGYTPTAH 193
Query: 196 YYQTLRCWRKNFMGKQSEI 214
+ CW +++ Q E+
Sbjct: 194 FILPENCWTEHYFAPQDEV 212
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL 82
++++K V G +VL + G G AI+I K G + SE++L+ A + G
Sbjct: 157 MVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRA----KALGA 212
Query: 83 QDHIRFYLCDY----RQLPKANKYDRIISCGMIEHVGHDYME 120
+ + + D+ R+L D++ ++H G Y E
Sbjct: 213 DETVNYTHPDWPKEVRRLTGGKGADKV-----VDHTGALYFE 249
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 74/199 (37%), Gaps = 26/199 (13%)
Query: 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80
RK I + ++ ++ DIGCG G + + + TGI L + ++ +A
Sbjct: 41 RKAVSFINE--LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKA 98
Query: 81 GLQDHIRFYLCDYRQLPKAN-KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139
D ++ LP N + D I S G I ++G E L G + +
Sbjct: 99 NCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVS 155
Query: 140 FISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG----IH 195
S + R P I+++ P + + + C++ +E G H
Sbjct: 156 EAS----WFTSER--PAEIEDFWM--DAYPEISVIPT--------CIDKMERAGYTPTAH 199
Query: 196 YYQTLRCWRKNFMGKQSEI 214
+ CW +++ Q E+
Sbjct: 200 FILPENCWTEHYFAPQDEV 218
>pdb|3BKX|A Chain A, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
Length = 275
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCK--YTGITLS 66
+ E +V G+++L+IGCG G L+ + Q G TGI ++
Sbjct: 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIA 77
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 2/129 (1%)
Query: 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL 82
+ + I+ A VLDIG G G A+ + G+ ++E ++ A +E G+
Sbjct: 10 LGLXIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEXVEVASSFAQEKGV 68
Query: 83 QDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142
++ +RF LP + II+C H D + L L++ +
Sbjct: 69 EN-VRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 127
Query: 143 APDQCYDEY 151
D DE+
Sbjct: 128 PEDPVLDEF 136
>pdb|3G5L|A Chain A, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
pdb|3G5L|B Chain B, Crystal Structure Of Putative S-Adenosylmethionine
Dependent Methyltransferase From Listeria Monocytogenes
Length = 253
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 38 VLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV 77
VLD+GCG+G I + K GI LSE L A+ K
Sbjct: 48 VLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKT 87
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85
L++ G+ +LD+GCG G L E + Q+G + G + ++ K R+ H
Sbjct: 49 LLQLLNPQPGEFILDLGCGTGQLT-EKIAQSGAEVLGTDNAATXIE----KARQN--YPH 101
Query: 86 IRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140
+ F + D R D + S + V E L + G V +F
Sbjct: 102 LHFDVADARNFRVDKPLDAVFSNAXLHWVKEP--EAAIASIHQALKSGGRFVAEF 154
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78
+G VLD+GCG G ++ + +Y G+ ++E + A ++ R
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRAR 108
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 15/94 (15%)
Query: 5 CAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGI 63
C + + E G++R + K +G++VLD+GC G L + I + G + G+
Sbjct: 22 CKYYGYRNPSCEDGRLR-----VLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRXVGL 76
Query: 64 TLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97
+ + A + +IR YL + +LP
Sbjct: 77 DIDSRLIHSA---------RQNIRHYLSEELRLP 101
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
pdb|1NBH|A Chain A, Structure Of Glycine N-Methyltransferase Complexed With
S- Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|B Chain B, Structure Of Glycine N-Methyltransferase Complexed With
S- Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|C Chain C, Structure Of Glycine N-Methyltransferase Complexed With
S- Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1NBH|D Chain D, Structure Of Glycine N-Methyltransferase Complexed With
S- Adenosylmethionine And Acetate, Gnmt:sam:ace
pdb|1KIA|A Chain A, Crystal Structure Of Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine And Acetate
pdb|1KIA|B Chain B, Crystal Structure Of Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine And Acetate
pdb|1KIA|C Chain C, Crystal Structure Of Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine And Acetate
pdb|1KIA|D Chain D, Crystal Structure Of Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine And Acetate
pdb|2IDJ|A Chain A, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|B Chain B, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|C Chain C, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDJ|D Chain D, Crystal Structure Of Rat Glycine N-methyltransferase
Apoprotein, Monoclinic Form
pdb|2IDK|A Chain A, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|B Chain B, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|C Chain C, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
pdb|2IDK|D Chain D, Crystal Structure Of Rat Glycine N-Methyltransferase
Complexed With Folate
Length = 292
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 73
VLD+ CG G +I +V++ G T + S++ LKYA
Sbjct: 58 HRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYA 94
>pdb|3THR|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THR|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Monoglutamate
pdb|3THS|A Chain A, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|B Chain B, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|C Chain C, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
pdb|3THS|D Chain D, Crystal Structure Of Rat Native Liver Glycine
N-Methyltransferase Complexed With
5-Methyltetrahydrofolate Pentaglutamate
Length = 293
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 73
VLD+ CG G +I +V++ G T + S++ LKYA
Sbjct: 59 HRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYA 95
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1NBI|A Chain A, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|B Chain B, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|C Chain C, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam.
pdb|1NBI|D Chain D, Structure Of R175k Mutated Glycine N-Methyltransferase
Complexed With S-Adenosylmethionine, R175k:sam
Length = 292
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 73
VLD+ CG G +I +V++ G T + S++ LKYA
Sbjct: 58 HRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYA 94
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 12 HEDLEVGQMRKVS---VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEE 68
HE++ ++R S + + + K + VLD+GCG G L++ K K + SE
Sbjct: 20 HEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVIAVDQSEI 79
Query: 69 QLKYAEIKVREAGLQDHI 86
+ +I +R L+D I
Sbjct: 80 LYQAMDI-IRLNKLEDTI 96
>pdb|3E8S|A Chain A, Crystal Structure Of Putative Sam Dependent
Methyltransferase In Complex With Sah (Np_744700.1) From
Pseudomonas Putida Kt2440 At 2.10 A Resolution
Length = 227
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 16/111 (14%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95
+ VLD+GCG G L + + G + G+ + A R AG + +L Y Q
Sbjct: 54 ERVLDLGCGEGWL-LRALADRGIEAVGVDGDRTLVDAA----RAAGAGE---VHLASYAQ 105
Query: 96 L-----PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141
L P YD I C + D + E +LL G LV+Q +
Sbjct: 106 LAEAKVPVGKDYDLI--CANFALLHQDII-ELLSAXRTLLVPGGALVIQTL 153
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 32 VSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQD 84
+ +G VLD+G G G + K G K I + EE + YA KV + GL++
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN 89
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYA 73
+G VLD+GCG G LA ++V + G K G+ + + QL+ A
Sbjct: 83 EGATVLDLGCGTGRDVYLASKLVGEHG-KVIGVDMLDNQLEVA 124
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 11/147 (7%)
Query: 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV 77
G + ++ +++ +VLDIG G G + I ++ G GI + + A +V
Sbjct: 39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV 98
Query: 78 REAGLQDHIRFYLCDY--RQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGL 135
+G + I F D ++ P+ N +D I S I + + + F C L G
Sbjct: 99 --SG-NNKIIFEANDILTKEFPE-NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGT 154
Query: 136 LVLQFISAPDQCYDEYRLSPGFIKEYI 162
L++ D C E KEY+
Sbjct: 155 LLI-----TDYCATEKENWDDEFKEYV 176
>pdb|3EGE|A Chain A, Crystal Structure Of Putative Methyltransferase From
Antibiotic Biosynthesis Pathway (Yp_324569.1) From
Anabaena Variabilis Atcc 29413 At 2.40 A Resolution
Length = 261
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 11/125 (8%)
Query: 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIK 76
V +R V+ +I + KG + DIG G G ++ + Q Y ++ + +
Sbjct: 17 VPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYA--------VEPSIVX 68
Query: 77 VREAGLQDHIRFYLCDYRQLPKANK-YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGL 135
++A + + ++ L +K D +IS I H H +E+ F + ++ +
Sbjct: 69 RQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSH--LEKSFQEXQRIIRDGTI 126
Query: 136 LVLQF 140
++L F
Sbjct: 127 VLLTF 131
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGI 63
+G++VLD+G G+G L + + + G + G+
Sbjct: 233 RGRQVLDLGAGYGALTLPLARM-GAEVVGV 261
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGI 63
+G++VLD+G G+G L + + + G + G+
Sbjct: 233 RGRQVLDLGAGYGALTLPLARM-GAEVVGV 261
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase
From Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase
From Plasmodium Falciparum
Length = 299
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 8 FKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSE 67
F+ +H G + K+ I A++ VL+IGCG G L ++++ IT+
Sbjct: 19 FQGQHLLKNPGILDKI---IYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDI 72
Query: 68 EQLKYAEIKVR 78
+ +E+K R
Sbjct: 73 DSRMISEVKKR 83
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 12 HEDLEVGQMRKVS---VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEE 68
HE+L ++R ++ + + K + VLD+G G G L + K K GI S
Sbjct: 41 HEELLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-- 98
Query: 69 QLKYAEIKVREAGLQDHI 86
+ +K+ +A DH+
Sbjct: 99 SISDYAVKIVKANKLDHV 116
>pdb|1R8X|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8X|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Tetragonal Form)
pdb|1R8Y|A Chain A, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|B Chain B, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|C Chain C, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|D Chain D, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|E Chain E, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|F Chain F, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|G Chain G, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
pdb|1R8Y|H Chain H, Crystal Structure Of Mouse Glycine N-Methyltransferase
(Monoclinic Form)
Length = 292
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 73
VLD+ CG G +I +V++ G + S++ LKYA
Sbjct: 58 HRVLDVACGTGVDSIMLVEE-GFSVMSVDASDKMLKYA 94
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup W
LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, C2 Spacegroup With
Short Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit)
Homolog From M. Thermoautotrophicum, Adohcy Binary
Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 30 ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89
A K +D+GCG G + +E+ + Y I + E + E ++ GL D++
Sbjct: 29 AEPGKNDVAVDVGCGTGGVTLELAGRVRRVYA-IDRNPEAISTTEXNLQRHGLGDNVTLX 87
Query: 90 LCD 92
D
Sbjct: 88 EGD 90
>pdb|2P7H|A Chain A, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7H|B Chain B, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7H|C Chain C, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7H|D Chain D, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7I|A Chain A, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.74 A Resolution
pdb|2P7I|B Chain B, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.74 A Resolution
Length = 250
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHV 114
T + SEE + +A+ ++++ H RF + QLP+ +YD I+ ++EH+
Sbjct: 68 TCVEASEEAISHAQGRLKDGITYIHSRF---EDAQLPR--RYDNIVLTHVLEHI 116
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 12 HEDLEVGQMRKVS---VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEE 68
HE++ ++R ++ + + K + VLD+G G G L + K K GI S
Sbjct: 32 HEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-- 89
Query: 69 QLKYAEIKVREAGLQDHI 86
+ +K+ +A DH+
Sbjct: 90 SISDYAVKIVKANKLDHV 107
>pdb|2GH1|A Chain A, Crystal Structure Of The Putative Sam-Dependent
Methyltransferase Bc2162 From Bacillus Cereus, Northeast
Structural Genomics Target Bcr20.
pdb|2GH1|B Chain B, Crystal Structure Of The Putative Sam-Dependent
Methyltransferase Bc2162 From Bacillus Cereus, Northeast
Structural Genomics Target Bcr20
Length = 301
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 23 VSVLIEKA-RVSKGQEVLDIGCGWG--TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE 79
VS L+ +++K ++D GCG+G L + + G KYTGI E L AE +
Sbjct: 27 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLXPLLPEGSKYTGIDSGETLL--AEARELF 84
Query: 80 AGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113
L F D ++ +KYD I + H
Sbjct: 85 RLLPYDSEFLEGDATEIELNDKYDIAICHAFLLH 118
>pdb|3GU3|A Chain A, Crystal Structure Of The Methyltransferase Bc_2162 In
Complex With S- Adenosyl-L-Homocysteine From Bacillus
Cereus, Northeast Structural Genomics Consortium Target
Bcr20
pdb|3GU3|B Chain B, Crystal Structure Of The Methyltransferase Bc_2162 In
Complex With S- Adenosyl-L-Homocysteine From Bacillus
Cereus, Northeast Structural Genomics Consortium Target
Bcr20
Length = 284
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 23 VSVLIEKA-RVSKGQEVLDIGCGWG--TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE 79
VS L+ +++K ++D GCG+G L + + G KYTGI E L AE +
Sbjct: 10 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLXPLLPEGSKYTGIDSGETLL--AEARELF 67
Query: 80 AGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113
L F D ++ +KYD I + H
Sbjct: 68 RLLPYDSEFLEGDATEIELNDKYDIAICHAFLLH 101
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase
Domain Of Bacterial-Avhen1-Cn
Length = 202
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAE 74
++++ ++ + S + V+D+GCG G L ++K + + TG+ +S L+ A+
Sbjct: 6 QRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQ 60
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 12 HEDLEVGQMRKVS---VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEE 68
HE++ ++R ++ + + K + VLD+G G G L + K K GI S
Sbjct: 35 HEEMLKDEVRTLTYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-- 92
Query: 69 QLKYAEIKVREAGLQDHI 86
+ +K+ +A DH+
Sbjct: 93 SISDYAVKIVKANKLDHV 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,548,973
Number of Sequences: 62578
Number of extensions: 350367
Number of successful extensions: 952
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 909
Number of HSP's gapped (non-prelim): 97
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)