Query 024096 Match_columns 272 No_of_seqs 239 out of 3289 Neff 9.4 Searched_HMMs 46136 Date Fri Mar 29 08:57:16 2013 Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024096hhsearch_cdd -cpu 12 -v 0 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PF02353 CMAS: Mycolic acid cy 100.0 7.3E-52 1.6E-56 349.2 24.2 244 1-248 29-273 (273) 2 COG2230 Cfa Cyclopropane fatty 100.0 1.3E-50 2.8E-55 336.3 27.2 245 1-252 39-283 (283) 3 PRK11705 cyclopropane fatty ac 100.0 4.9E-42 1.1E-46 303.1 30.1 240 1-254 135-374 (383) 4 smart00828 PKS_MT Methyltransf 100.0 1.1E-28 2.4E-33 204.4 21.1 204 36-255 1-205 (224) 5 PLN02244 tocopherol O-methyltr 100.0 1.6E-27 3.5E-32 208.5 25.9 241 4-254 81-340 (340) 6 PTZ00098 phosphoethanolamine N 100.0 2.1E-26 4.5E-31 194.7 25.1 223 21-253 39-263 (263) 7 PLN02336 phosphoethanolamine N 99.9 1.2E-24 2.6E-29 199.2 25.3 219 23-253 255-475 (475) 8 COG2226 UbiE Methylase involve 99.9 1.4E-22 2.9E-27 166.2 15.6 126 18-146 34-162 (238) 9 PF01209 Ubie_methyltran: ubiE 99.9 5.9E-23 1.3E-27 169.9 10.7 130 14-146 26-159 (233) 10 PRK14103 trans-aconitate 2-met 99.9 2.7E-20 5.9E-25 157.1 20.6 116 16-141 11-127 (255) 11 PLN02233 ubiquinone biosynthes 99.9 1.1E-20 2.4E-25 159.6 17.1 162 27-193 66-250 (261) 12 PLN02396 hexaprenyldihydroxybe 99.9 1.1E-20 2.3E-25 163.0 16.5 156 33-192 130-290 (322) 13 COG2227 UbiG 2-polyprenyl-3-me 99.8 4.4E-21 9.5E-26 154.8 10.0 152 33-191 58-215 (243) 14 PRK11036 putative S-adenosyl-L 99.8 6.7E-20 1.5E-24 154.6 17.2 136 3-142 13-151 (255) 15 PRK15068 tRNA mo(5)U34 methylt 99.8 1.5E-19 3.2E-24 156.8 19.4 171 19-194 107-277 (322) 16 TIGR00452 methyltransferase, p 99.8 2.8E-19 6.2E-24 153.6 19.9 174 16-194 103-276 (314) 17 PF12847 Methyltransf_18: Meth 99.8 8.6E-20 1.9E-24 134.5 13.7 107 34-140 1-111 (112) 18 PRK11207 tellurite resistance 99.8 4.6E-19 1E-23 143.7 19.0 151 24-191 20-170 (197) 19 TIGR02752 MenG_heptapren 2-hep 99.8 1.1E-19 2.4E-24 151.2 15.6 164 24-193 35-220 (231) 20 PRK01683 trans-aconitate 2-met 99.8 1.7E-18 3.6E-23 146.4 21.0 118 15-140 12-130 (258) 21 PRK08317 hypothetical protein; 99.8 1E-17 2.2E-22 139.7 23.5 115 24-142 9-126 (241) 22 KOG1270 Methyltransferases [Co 99.8 1.5E-20 3.2E-25 152.7 5.7 152 35-192 90-250 (282) 23 KOG1540 Ubiquinone biosynthesi 99.8 7E-19 1.5E-23 142.1 13.2 127 16-144 81-218 (296) 24 TIGR00477 tehB tellurite resis 99.8 2.4E-18 5.1E-23 139.3 14.7 150 24-191 20-169 (195) 25 TIGR02716 C20_methyl_CrtF C-20 99.8 7.8E-18 1.7E-22 145.8 18.3 159 23-188 138-303 (306) 26 PRK15451 tRNA cmo(5)U34 methyl 99.8 4.9E-18 1.1E-22 142.5 16.1 111 32-143 54-167 (247) 27 PF13847 Methyltransf_31: Meth 99.8 2.5E-18 5.5E-23 133.8 13.3 107 33-142 2-112 (152) 28 PF08241 Methyltransf_11: Meth 99.8 1.1E-18 2.4E-23 124.3 10.3 94 39-138 1-95 (95) 29 TIGR00740 methyltransferase, p 99.8 7.1E-18 1.5E-22 141.0 16.8 112 33-145 52-166 (239) 30 TIGR02021 BchM-ChlM magnesium 99.8 7.7E-18 1.7E-22 139.0 16.7 167 21-198 40-213 (219) 31 PLN02490 MPBQ/MSBQ methyltrans 99.8 6.2E-18 1.3E-22 146.4 16.6 155 24-194 102-259 (340) 32 PRK11873 arsM arsenite S-adeno 99.8 1E-17 2.2E-22 142.7 17.2 155 30-191 73-230 (272) 33 PRK10258 biotin biosynthesis p 99.8 2E-17 4.2E-22 139.4 16.8 168 16-197 24-192 (251) 34 PF13489 Methyltransf_23: Meth 99.8 2E-18 4.3E-23 135.2 9.9 140 32-188 20-160 (161) 35 PRK00107 gidB 16S rRNA methylt 99.8 6E-17 1.3E-21 129.6 17.8 101 32-139 43-144 (187) 36 PRK00216 ubiE ubiquinone/menaq 99.8 3.9E-17 8.4E-22 136.3 16.8 166 24-194 41-228 (239) 37 PRK12335 tellurite resistance 99.8 1E-16 2.2E-21 137.5 18.8 148 26-191 112-259 (287) 38 PF03848 TehB: Tellurite resis 99.7 5.9E-17 1.3E-21 129.0 15.2 117 24-143 20-136 (192) 39 PRK07580 Mg-protoporphyrin IX 99.7 1.2E-16 2.5E-21 132.8 16.2 166 32-204 61-228 (230) 40 PF08003 Methyltransf_9: Prote 99.7 1.8E-16 3.8E-21 132.6 17.1 165 22-193 103-269 (315) 41 COG4106 Tam Trans-aconitate me 99.7 6.9E-17 1.5E-21 127.6 13.4 165 18-191 14-186 (257) 42 TIGR02469 CbiT precorrin-6Y C5 99.7 1.8E-16 4E-21 118.6 15.2 114 21-140 6-122 (124) 43 TIGR00138 gidB 16S rRNA methyl 99.7 2.3E-16 5E-21 125.9 16.4 99 34-139 42-141 (181) 44 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 3.6E-16 7.9E-21 129.0 16.3 119 22-145 27-148 (223) 45 TIGR03840 TMPT_Se_Te thiopurin 99.7 1.5E-15 3.3E-20 124.1 19.5 152 24-192 24-188 (213) 46 KOG4300 Predicted methyltransf 99.7 5E-17 1.1E-21 127.4 10.1 112 29-143 71-185 (252) 47 PRK05134 bifunctional 3-demeth 99.7 3.5E-16 7.5E-21 130.3 15.7 184 14-205 28-217 (233) 48 PF05175 MTS: Methyltransferas 99.7 6.2E-16 1.4E-20 122.5 16.0 129 4-139 7-139 (170) 49 PF13649 Methyltransf_25: Meth 99.7 4.1E-17 8.9E-22 118.0 8.3 95 38-134 1-101 (101) 50 PRK08287 cobalt-precorrin-6Y C 99.7 8.9E-16 1.9E-20 123.6 16.7 111 24-141 21-132 (187) 51 TIGR03587 Pse_Me-ase pseudamin 99.7 4.2E-16 9.2E-21 126.8 14.6 121 13-144 24-146 (204) 52 smart00138 MeTrc Methyltransfe 99.7 2.2E-16 4.8E-21 133.5 13.3 134 6-139 71-241 (264) 53 PRK13944 protein-L-isoaspartat 99.7 4.5E-16 9.8E-21 127.0 14.5 111 21-139 59-172 (205) 54 TIGR02072 BioC biotin biosynth 99.7 6.1E-16 1.3E-20 129.0 15.0 157 16-189 13-174 (240) 55 PLN02585 magnesium protoporphy 99.7 1E-15 2.3E-20 131.8 15.0 160 23-194 130-302 (315) 56 TIGR00537 hemK_rel_arch HemK-r 99.7 3.4E-15 7.4E-20 119.3 17.0 138 26-193 11-167 (179) 57 PRK13255 thiopurine S-methyltr 99.7 8.7E-15 1.9E-19 120.1 19.2 149 24-192 27-191 (218) 58 PF08242 Methyltransf_12: Meth 99.7 7.2E-18 1.6E-22 121.5 0.4 95 39-136 1-99 (99) 59 COG2264 PrmA Ribosomal protein 99.7 2.8E-15 6.1E-20 126.3 15.8 128 34-192 162-289 (300) 60 PF05401 NodS: Nodulation prot 99.7 1.3E-15 2.8E-20 120.0 12.7 110 28-141 37-147 (201) 61 COG4976 Predicted methyltransf 99.7 2.4E-17 5.3E-22 131.2 2.9 172 2-193 85-267 (287) 62 TIGR01983 UbiG ubiquinone bios 99.7 2.1E-15 4.5E-20 124.8 14.6 167 22-193 29-205 (224) 63 COG2242 CobL Precorrin-6B meth 99.7 8E-15 1.7E-19 114.6 16.9 122 12-142 14-137 (187) 64 PRK06202 hypothetical protein; 99.7 1.8E-15 4E-20 125.9 14.2 153 31-191 57-222 (232) 65 PRK06922 hypothetical protein; 99.7 1.5E-15 3.4E-20 139.4 14.5 115 29-145 413-542 (677) 66 PRK13942 protein-L-isoaspartat 99.7 2.5E-15 5.5E-20 123.1 14.2 112 19-139 61-175 (212) 67 PLN03075 nicotianamine synthas 99.7 2.1E-15 4.5E-20 127.5 13.8 111 29-140 118-233 (296) 68 PRK00377 cbiT cobalt-precorrin 99.7 6.6E-15 1.4E-19 119.5 16.1 121 12-139 20-144 (198) 69 TIGR00080 pimt protein-L-isoas 99.7 3.5E-15 7.6E-20 122.7 14.4 111 21-140 64-177 (215) 70 PF07021 MetW: Methionine bios 99.7 2.3E-15 5E-20 118.4 12.5 157 24-196 5-172 (193) 71 PRK00517 prmA ribosomal protei 99.6 3.9E-15 8.4E-20 125.2 14.5 124 32-193 117-240 (250) 72 PRK15001 SAM-dependent 23S rib 99.6 3.9E-15 8.5E-20 130.8 14.8 129 5-139 205-339 (378) 73 PLN02336 phosphoethanolamine N 99.6 2.1E-15 4.5E-20 138.3 13.7 124 17-144 20-146 (475) 74 KOG1271 Methyltransferases [Ge 99.6 3.8E-15 8.3E-20 114.6 12.7 126 17-142 46-183 (227) 75 PRK14967 putative methyltransf 99.6 3.9E-14 8.5E-19 117.1 19.5 117 21-139 23-158 (223) 76 PRK05785 hypothetical protein; 99.6 5.7E-15 1.2E-19 122.1 13.3 89 34-133 51-140 (226) 77 COG4123 Predicted O-methyltran 99.6 5.8E-15 1.2E-19 121.4 13.1 113 27-139 37-169 (248) 78 PRK04266 fibrillarin; Provisio 99.6 1.6E-14 3.5E-19 119.0 15.6 142 28-193 66-212 (226) 79 PRK00121 trmB tRNA (guanine-N( 99.6 3.3E-15 7.2E-20 121.6 11.3 106 34-140 40-156 (202) 80 TIGR00406 prmA ribosomal prote 99.6 3.5E-14 7.6E-19 121.7 17.3 103 33-141 158-260 (288) 81 PRK14968 putative methyltransf 99.6 5.3E-14 1.2E-18 113.1 16.1 114 26-140 15-148 (188) 82 TIGR01177 conserved hypothetic 99.6 1.8E-14 4E-19 125.8 13.9 115 24-140 172-294 (329) 83 COG2518 Pcm Protein-L-isoaspar 99.6 3.3E-14 7.2E-19 113.5 13.8 111 21-141 59-170 (209) 84 PF06325 PrmA: Ribosomal prote 99.6 2E-14 4.3E-19 122.3 12.9 103 32-142 159-261 (295) 85 PF13659 Methyltransf_26: Meth 99.6 7.4E-15 1.6E-19 109.0 9.0 106 35-140 1-115 (117) 86 PRK09489 rsmC 16S ribosomal RN 99.6 4.2E-14 9.2E-19 123.5 14.7 113 25-140 187-303 (342) 87 TIGR00091 tRNA (guanine-N(7)-) 99.6 1.3E-14 2.7E-19 117.5 10.2 107 33-140 15-132 (194) 88 TIGR03533 L3_gln_methyl protei 99.6 9.1E-14 2E-18 118.8 15.7 107 33-139 120-250 (284) 89 TIGR02081 metW methionine bios 99.6 3.7E-14 7.9E-19 114.8 12.5 154 23-192 4-168 (194) 90 PRK07402 precorrin-6B methylas 99.6 1.1E-13 2.4E-18 112.2 14.9 115 20-141 26-143 (196) 91 TIGR03534 RF_mod_PrmC protein- 99.6 2.8E-13 6E-18 114.0 17.4 117 21-139 75-216 (251) 92 PRK00312 pcm protein-L-isoaspa 99.6 9.2E-14 2E-18 114.1 13.7 113 19-141 63-176 (212) 93 PF01135 PCMT: Protein-L-isoas 99.6 3.4E-14 7.5E-19 115.4 10.8 113 18-139 56-171 (209) 94 KOG2361 Predicted methyltransf 99.5 2.1E-14 4.5E-19 115.6 8.8 150 37-190 74-236 (264) 95 PRK14121 tRNA (guanine-N(7)-)- 99.5 8.7E-14 1.9E-18 121.9 13.4 116 24-140 112-235 (390) 96 COG2813 RsmC 16S RNA G1207 met 99.5 1.4E-13 3E-18 115.5 13.7 129 4-141 134-267 (300) 97 TIGR00536 hemK_fam HemK family 99.5 2.4E-13 5.2E-18 116.4 15.5 106 34-139 114-243 (284) 98 PF00891 Methyltransf_2: O-met 99.5 1.7E-13 3.7E-18 114.7 14.2 114 24-147 90-206 (241) 99 PRK11805 N5-glutamine S-adenos 99.5 2.1E-13 4.6E-18 117.6 15.0 105 35-139 134-262 (307) 100 PRK09328 N5-glutamine S-adenos 99.5 8.6E-13 1.9E-17 112.6 17.6 116 23-139 97-237 (275) 101 PF05891 Methyltransf_PK: AdoM 99.5 1.9E-13 4E-18 109.6 12.1 165 15-191 30-201 (218) 102 PTZ00146 fibrillarin; Provisio 99.5 8.2E-13 1.8E-17 111.4 16.5 105 28-139 126-236 (293) 103 PRK11088 rrmA 23S rRNA methylt 99.5 1.6E-13 3.5E-18 116.8 12.1 94 33-141 84-182 (272) 104 PRK10901 16S rRNA methyltransf 99.5 7.7E-13 1.7E-17 119.5 17.0 121 21-143 231-375 (427) 105 PRK14966 unknown domain/N5-glu 99.5 9.4E-13 2E-17 116.2 17.0 113 23-139 242-380 (423) 106 PRK13256 thiopurine S-methyltr 99.5 1.1E-12 2.4E-17 107.4 15.9 115 27-142 36-165 (226) 107 PRK01544 bifunctional N5-gluta 99.5 1.1E-12 2.4E-17 120.4 17.0 106 34-139 138-268 (506) 108 TIGR03438 probable methyltrans 99.5 5.8E-13 1.3E-17 114.9 14.2 114 24-139 55-176 (301) 109 PRK11188 rrmJ 23S rRNA methylt 99.5 4.2E-13 9.2E-18 109.6 12.6 109 22-142 38-167 (209) 110 PRK13943 protein-L-isoaspartat 99.5 5E-13 1.1E-17 115.5 13.3 112 20-140 66-180 (322) 111 COG2519 GCD14 tRNA(1-methylade 99.5 7.4E-13 1.6E-17 108.1 13.5 109 24-139 84-194 (256) 112 PRK14903 16S rRNA methyltransf 99.5 1.3E-12 2.8E-17 117.8 16.1 119 25-144 228-370 (431) 113 PF08704 GCD14: tRNA methyltra 99.5 9E-13 2E-17 109.3 13.4 109 23-138 29-144 (247) 114 TIGR00563 rsmB ribosomal RNA s 99.5 8.5E-13 1.9E-17 119.2 14.1 126 20-145 224-373 (426) 115 PRK14901 16S rRNA methyltransf 99.5 1.7E-12 3.8E-17 117.4 16.0 120 23-143 241-387 (434) 116 PLN02232 ubiquinone biosynthes 99.5 3.3E-13 7.2E-18 105.8 9.8 84 61-146 1-87 (160) 117 PF05724 TPMT: Thiopurine S-me 99.5 8.5E-13 1.8E-17 108.2 12.6 152 23-191 26-190 (218) 118 PRK14904 16S rRNA methyltransf 99.5 1.5E-12 3.3E-17 118.2 15.0 117 26-143 242-380 (445) 119 PRK14902 16S rRNA methyltransf 99.4 3E-12 6.5E-17 116.3 16.1 118 24-142 240-381 (444) 120 TIGR00446 nop2p NOL1/NOP2/sun 99.4 2.1E-12 4.6E-17 109.4 13.8 116 27-143 64-202 (264) 121 PF06080 DUF938: Protein of un 99.4 2.9E-12 6.4E-17 102.3 13.7 159 34-194 25-195 (204) 122 PLN02781 Probable caffeoyl-CoA 99.4 1.5E-12 3.2E-17 108.3 12.5 106 32-142 66-180 (234) 123 PHA03411 putative methyltransf 99.4 1.9E-12 4.1E-17 108.1 12.9 101 33-139 63-182 (279) 124 KOG1541 Predicted protein carb 99.4 1.1E-12 2.4E-17 104.2 10.8 123 13-142 27-162 (270) 125 TIGR03704 PrmC_rel_meth putati 99.4 6.9E-12 1.5E-16 105.3 16.4 112 24-139 75-215 (251) 126 COG2890 HemK Methylase of poly 99.4 8E-12 1.7E-16 106.3 16.7 101 37-139 113-237 (280) 127 smart00650 rADc Ribosomal RNA 99.4 3.4E-12 7.3E-17 101.0 13.0 110 23-139 2-112 (169) 128 PRK04457 spermidine synthase; 99.4 1.6E-12 3.5E-17 109.8 11.8 110 33-142 65-179 (262) 129 PRK13168 rumA 23S rRNA m(5)U19 99.4 1.1E-11 2.4E-16 112.6 16.2 113 20-140 283-400 (443) 130 cd02440 AdoMet_MTases S-adenos 99.4 5.4E-12 1.2E-16 90.3 11.0 101 37-139 1-103 (107) 131 COG4122 Predicted O-methyltran 99.4 1E-11 2.2E-16 100.7 12.4 110 31-145 56-171 (219) 132 PRK11783 rlmL 23S rRNA m(2)G24 99.4 1.3E-11 2.9E-16 117.7 14.8 107 34-140 538-656 (702) 133 PRK00811 spermidine synthase; 99.4 6.8E-12 1.5E-16 107.2 11.5 107 33-139 75-190 (283) 134 PF01596 Methyltransf_3: O-met 99.4 2.7E-11 5.9E-16 98.2 14.0 122 14-143 28-158 (205) 135 PRK03522 rumB 23S rRNA methylu 99.3 3.8E-11 8.2E-16 104.3 15.4 110 23-139 162-273 (315) 136 TIGR00438 rrmJ cell division p 99.3 1.4E-11 3.1E-16 99.2 11.5 106 23-140 20-146 (188) 137 KOG3010 Methyltransferase [Gen 99.3 3.6E-12 7.7E-17 102.8 7.2 106 32-141 30-138 (261) 138 PLN02476 O-methyltransferase 99.3 2.9E-11 6.3E-16 101.9 13.0 107 32-143 116-231 (278) 139 PF05219 DREV: DREV methyltran 99.3 5E-11 1.1E-15 97.9 13.3 144 34-192 94-241 (265) 140 PF03291 Pox_MCEL: mRNA cappin 99.3 1.7E-11 3.6E-16 106.4 11.1 109 34-142 62-188 (331) 141 PRK15128 23S rRNA m(5)C1962 me 99.3 5.3E-11 1.2E-15 105.9 14.1 107 34-140 220-339 (396) 142 PRK10909 rsmD 16S rRNA m(2)G96 99.3 5.6E-11 1.2E-15 96.0 12.9 114 24-141 42-160 (199) 143 PLN02672 methionine S-methyltr 99.3 1.2E-10 2.6E-15 113.8 16.9 106 35-140 119-278 (1082) 144 PHA03412 putative methyltransf 99.3 3.9E-11 8.4E-16 98.1 11.0 96 34-135 49-158 (241) 145 PF01739 CheR: CheR methyltran 99.3 6.2E-11 1.3E-15 95.4 12.0 133 7-139 4-174 (196) 146 PLN02366 spermidine synthase 99.3 4.3E-11 9.3E-16 103.0 11.1 107 33-139 90-205 (308) 147 PF02390 Methyltransf_4: Putat 99.3 5.2E-11 1.1E-15 96.1 10.9 104 35-139 18-132 (195) 148 TIGR02085 meth_trns_rumB 23S r 99.3 2.2E-10 4.7E-15 101.8 15.7 110 24-140 223-334 (374) 149 TIGR00479 rumA 23S rRNA (uraci 99.3 1.8E-10 3.8E-15 104.5 15.4 114 19-139 277-395 (431) 150 TIGR00417 speE spermidine synt 99.2 1.6E-10 3.5E-15 98.2 13.3 107 33-139 71-185 (270) 151 PF05185 PRMT5: PRMT5 arginine 99.2 7.5E-11 1.6E-15 106.3 11.2 103 35-137 187-294 (448) 152 PLN02589 caffeoyl-CoA O-methyl 99.2 1.8E-10 4E-15 95.8 12.5 105 33-142 78-192 (247) 153 KOG1499 Protein arginine N-met 99.2 8.6E-11 1.9E-15 100.1 10.4 106 31-137 57-164 (346) 154 PF10294 Methyltransf_16: Puta 99.2 3.1E-10 6.8E-15 90.0 12.9 122 18-142 23-158 (173) 155 PF05148 Methyltransf_8: Hypot 99.2 2.3E-10 4.9E-15 91.2 11.3 127 22-193 59-187 (219) 156 PRK03612 spermidine synthase; 99.2 1.6E-10 3.4E-15 106.8 11.8 108 33-140 296-415 (521) 157 PRK01581 speE spermidine synth 99.2 2.2E-10 4.9E-15 99.3 11.2 108 32-139 148-267 (374) 158 PRK11727 23S rRNA mA1618 methy 99.2 5.6E-10 1.2E-14 96.2 13.5 82 34-115 114-203 (321) 159 KOG2899 Predicted methyltransf 99.2 4.1E-10 8.9E-15 91.0 11.5 105 33-138 57-207 (288) 160 KOG1500 Protein arginine N-met 99.2 3.4E-10 7.4E-15 95.4 11.2 105 32-137 175-279 (517) 161 COG0220 Predicted S-adenosylme 99.2 3.4E-10 7.3E-15 93.0 10.6 103 36-139 50-163 (227) 162 KOG3178 Hydroxyindole-O-methyl 99.2 1.8E-09 3.9E-14 92.3 15.2 155 34-197 177-336 (342) 163 PTZ00338 dimethyladenosine tra 99.1 4.1E-10 8.8E-15 96.5 10.9 92 20-113 22-113 (294) 164 KOG2904 Predicted methyltransf 99.1 2.2E-09 4.7E-14 88.3 14.4 112 32-143 146-288 (328) 165 COG2263 Predicted RNA methylas 99.1 1.1E-09 2.4E-14 85.7 12.0 81 29-113 40-120 (198) 166 KOG3045 Predicted RNA methylas 99.1 3.8E-10 8.2E-15 91.9 9.7 123 24-193 169-293 (325) 167 PF12147 Methyltransf_20: Puta 99.1 2.5E-09 5.3E-14 89.2 14.6 107 33-139 134-248 (311) 168 COG1092 Predicted SAM-dependen 99.1 7.9E-10 1.7E-14 97.4 12.3 122 17-142 203-338 (393) 169 KOG1975 mRNA cap methyltransfe 99.1 4.7E-10 1E-14 94.2 10.1 107 32-138 115-235 (389) 170 PRK14896 ksgA 16S ribosomal RN 99.1 1.4E-09 3E-14 91.9 13.1 89 19-112 14-102 (258) 171 PF02475 Met_10: Met-10+ like- 99.1 4.3E-10 9.3E-15 90.6 8.7 100 32-137 99-199 (200) 172 PRK00274 ksgA 16S ribosomal RN 99.1 1.2E-09 2.7E-14 92.9 11.9 86 21-111 29-115 (272) 173 TIGR00095 RNA methyltransferas 99.1 1.4E-09 2.9E-14 87.5 11.1 104 34-140 49-159 (189) 174 PF01170 UPF0020: Putative RNA 99.1 2.6E-09 5.6E-14 85.2 12.3 114 24-137 18-148 (179) 175 PRK11933 yebU rRNA (cytosine-C 99.1 3.4E-09 7.3E-14 96.1 13.9 119 27-146 104-248 (470) 176 COG1041 Predicted DNA modifica 99.0 2.9E-09 6.4E-14 91.3 12.1 115 24-140 187-310 (347) 177 TIGR00755 ksgA dimethyladenosi 99.0 4E-09 8.7E-14 88.9 12.6 99 20-128 15-116 (253) 178 KOG1661 Protein-L-isoaspartate 99.0 1.4E-09 3E-14 86.2 9.0 108 24-139 70-192 (237) 179 COG3963 Phospholipid N-methylt 99.0 3.9E-09 8.5E-14 80.6 11.1 115 22-142 36-158 (194) 180 KOG2915 tRNA(1-methyladenosine 99.0 7.5E-09 1.6E-13 85.1 13.4 107 23-136 94-205 (314) 181 COG2265 TrmA SAM-dependent met 99.0 1E-08 2.2E-13 92.1 15.0 115 18-139 277-395 (432) 182 PRK10611 chemotaxis methyltran 99.0 1.8E-09 4E-14 91.7 9.1 105 35-139 116-261 (287) 183 PRK05031 tRNA (uracil-5-)-meth 99.0 1.3E-08 2.9E-13 90.0 14.8 108 22-139 195-319 (362) 184 COG1352 CheR Methylase of chem 99.0 5.9E-09 1.3E-13 87.6 11.2 131 7-138 70-239 (268) 185 COG2521 Predicted archaeal met 99.0 1.3E-09 2.8E-14 87.6 6.7 109 29-138 129-243 (287) 186 PRK01544 bifunctional N5-gluta 99.0 5.2E-09 1.1E-13 96.4 11.7 126 13-139 319-461 (506) 187 PF03602 Cons_hypoth95: Conser 99.0 4.1E-09 8.9E-14 84.1 9.3 108 33-142 41-155 (183) 188 PRK04338 N(2),N(2)-dimethylgua 98.9 7.8E-09 1.7E-13 91.7 11.2 99 34-139 57-157 (382) 189 PF02527 GidB: rRNA small subu 98.9 1.6E-08 3.6E-13 80.5 11.5 95 37-138 51-146 (184) 190 KOG2940 Predicted methyltransf 98.9 1.4E-09 3.1E-14 87.2 5.4 101 34-139 72-173 (325) 191 PLN02823 spermine synthase 98.9 7.5E-09 1.6E-13 90.1 10.3 106 34-140 103-220 (336) 192 COG0144 Sun tRNA and rRNA cyto 98.9 8.4E-08 1.8E-12 84.5 16.7 121 24-145 146-293 (355) 193 PF10672 Methyltrans_SAM: S-ad 98.9 1.2E-08 2.6E-13 86.6 11.0 107 34-141 123-239 (286) 194 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.9 3.5E-09 7.6E-14 88.2 7.2 177 3-190 21-238 (256) 195 TIGR02143 trmA_only tRNA (urac 98.9 1.8E-08 4E-13 88.7 12.1 108 22-139 186-310 (353) 196 PRK04148 hypothetical protein; 98.9 6.2E-08 1.3E-12 72.6 13.1 102 24-141 6-110 (134) 197 KOG1269 SAM-dependent methyltr 98.9 4E-09 8.6E-14 92.4 7.6 112 31-144 107-219 (364) 198 KOG3191 Predicted N6-DNA-methy 98.9 4.2E-08 9E-13 76.1 12.0 109 31-141 40-169 (209) 199 COG0030 KsgA Dimethyladenosine 98.9 2.1E-08 4.6E-13 83.4 10.3 87 21-111 17-105 (259) 200 KOG0820 Ribosomal RNA adenine 98.8 2.4E-08 5.2E-13 82.2 9.7 90 21-112 45-134 (315) 201 PF07942 N2227: N2227-like pro 98.8 2.4E-07 5.2E-12 77.8 15.6 143 34-191 56-242 (270) 202 PF03141 Methyltransf_29: Puta 98.8 2E-09 4.3E-14 95.9 3.1 128 9-144 88-223 (506) 203 COG0357 GidB Predicted S-adeno 98.8 5.2E-08 1.1E-12 79.0 10.5 97 35-138 68-166 (215) 204 COG2520 Predicted methyltransf 98.8 3.6E-08 7.8E-13 85.2 10.0 106 33-144 187-293 (341) 205 COG0742 N6-adenine-specific me 98.8 2.1E-07 4.5E-12 73.5 13.4 116 24-140 31-154 (187) 206 PF08123 DOT1: Histone methyla 98.8 4E-08 8.6E-13 79.7 9.6 119 17-138 25-156 (205) 207 KOG1663 O-methyltransferase [S 98.8 1.1E-07 2.3E-12 76.8 11.7 106 33-143 72-186 (237) 208 TIGR00478 tly hemolysin TlyA f 98.8 1E-07 2.2E-12 78.5 11.8 102 20-138 60-169 (228) 209 COG0421 SpeE Spermidine syntha 98.8 1E-07 2.2E-12 80.9 11.8 103 36-139 78-189 (282) 210 PF05958 tRNA_U5-meth_tr: tRNA 98.8 2.5E-07 5.5E-12 81.5 14.7 95 18-115 181-292 (352) 211 KOG3420 Predicted RNA methylas 98.8 2.8E-08 6E-13 74.2 6.9 89 23-113 37-126 (185) 212 PF09445 Methyltransf_15: RNA 98.8 1.6E-08 3.5E-13 78.5 5.8 74 36-110 1-78 (163) 213 PF09243 Rsm22: Mitochondrial 98.7 2.5E-07 5.5E-12 78.7 13.0 124 21-146 20-145 (274) 214 PF01564 Spermine_synth: Sperm 98.7 8.7E-08 1.9E-12 80.2 9.7 108 33-140 75-191 (246) 215 PRK00050 16S rRNA m(4)C1402 me 98.7 5.2E-08 1.1E-12 83.1 8.3 87 22-111 7-100 (296) 216 PF04672 Methyltransf_19: S-ad 98.7 2E-07 4.3E-12 77.8 11.0 166 16-187 49-232 (267) 217 PF04816 DUF633: Family of unk 98.7 9.5E-07 2.1E-11 71.7 13.9 98 38-139 1-100 (205) 218 TIGR00308 TRM1 tRNA(guanine-26 98.7 3.9E-07 8.5E-12 80.6 12.6 99 35-140 45-147 (374) 219 TIGR03439 methyl_EasF probable 98.6 9E-07 2E-11 76.5 14.0 114 24-139 68-196 (319) 220 PRK11783 rlmL 23S rRNA m(2)G24 98.6 7.1E-07 1.5E-11 85.6 14.1 116 24-139 179-346 (702) 221 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.6 4.1E-07 9E-12 77.8 11.1 125 19-144 70-223 (283) 222 PF02384 N6_Mtase: N-6 DNA Met 98.6 4.8E-07 1E-11 78.6 11.1 119 23-141 35-184 (311) 223 PF13679 Methyltransf_32: Meth 98.6 8.6E-07 1.9E-11 67.9 11.1 100 32-138 23-129 (141) 224 PRK00536 speE spermidine synth 98.6 1E-06 2.2E-11 74.0 11.5 99 32-140 70-171 (262) 225 PF01728 FtsJ: FtsJ-like methy 98.5 1.6E-07 3.4E-12 75.1 6.1 110 21-142 7-141 (181) 226 COG0116 Predicted N6-adenine-s 98.5 2.6E-06 5.6E-11 74.4 13.7 116 24-139 181-343 (381) 227 KOG1331 Predicted methyltransf 98.5 2.7E-08 5.8E-13 82.7 1.3 101 33-143 44-146 (293) 228 COG4076 Predicted RNA methylas 98.5 2E-07 4.3E-12 72.8 5.5 100 36-138 34-133 (252) 229 PF01269 Fibrillarin: Fibrilla 98.4 4.1E-06 8.9E-11 67.7 11.7 106 28-140 67-178 (229) 230 PF00398 RrnaAD: Ribosomal RNA 98.4 1.5E-06 3.3E-11 73.6 9.7 105 19-132 15-123 (262) 231 PF11968 DUF3321: Putative met 98.4 2.5E-06 5.4E-11 68.7 10.2 120 36-192 53-182 (219) 232 PF03059 NAS: Nicotianamine sy 98.4 2.6E-06 5.7E-11 71.8 10.3 104 35-139 121-229 (276) 233 KOG1709 Guanidinoacetate methy 98.4 4.5E-06 9.8E-11 66.7 10.6 102 33-138 100-204 (271) 234 PF13578 Methyltransf_24: Meth 98.4 1.8E-07 3.8E-12 68.0 2.3 98 39-140 1-105 (106) 235 COG3897 Predicted methyltransf 98.4 2.4E-06 5.3E-11 67.3 8.7 108 24-138 69-176 (218) 236 COG0293 FtsJ 23S rRNA methylas 98.3 8.7E-06 1.9E-10 65.4 11.4 109 22-142 32-161 (205) 237 PRK10742 putative methyltransf 98.3 2.7E-06 5.9E-11 70.3 8.7 90 24-114 76-177 (250) 238 KOG3987 Uncharacterized conser 98.3 1.2E-07 2.6E-12 75.1 0.6 94 34-139 112-206 (288) 239 KOG4058 Uncharacterized conser 98.3 5.3E-06 1.2E-10 62.3 9.2 123 17-145 55-177 (199) 240 COG1889 NOP1 Fibrillarin-like 98.3 2.1E-05 4.5E-10 62.4 12.7 106 28-140 70-180 (231) 241 COG0500 SmtA SAM-dependent met 98.3 1.8E-05 3.9E-10 60.5 12.6 102 38-144 52-159 (257) 242 KOG2187 tRNA uracil-5-methyltr 98.3 5.8E-06 1.3E-10 74.2 10.6 112 22-139 371-489 (534) 243 PF05971 Methyltransf_10: Prot 98.3 8.5E-06 1.8E-10 69.4 10.7 95 21-115 84-191 (299) 244 TIGR02987 met_A_Alw26 type II 98.3 1.2E-05 2.6E-10 74.9 12.2 79 34-113 31-124 (524) 245 PRK11760 putative 23S rRNA C24 98.2 1.1E-05 2.4E-10 69.6 10.1 97 22-133 191-296 (357) 246 PF07091 FmrO: Ribosomal RNA m 98.2 3.4E-05 7.3E-10 63.7 12.0 148 24-190 93-243 (251) 247 COG2384 Predicted SAM-dependen 98.2 0.00011 2.4E-09 59.2 14.0 109 24-138 8-118 (226) 248 KOG3201 Uncharacterized conser 98.1 6.2E-06 1.4E-10 63.0 6.2 113 25-139 20-139 (201) 249 TIGR01444 fkbM_fam methyltrans 98.1 9.9E-06 2.2E-10 61.9 7.5 60 37-97 1-61 (143) 250 KOG1122 tRNA and rRNA cytosine 98.1 3E-05 6.4E-10 68.0 10.8 116 29-145 236-376 (460) 251 TIGR00006 S-adenosyl-methyltra 98.1 2.7E-05 5.9E-10 66.7 10.1 88 22-111 8-102 (305) 252 KOG2730 Methylase [General fun 98.1 1.8E-06 3.8E-11 69.2 2.5 76 34-110 94-174 (263) 253 COG1189 Predicted rRNA methyla 98.1 4.3E-05 9.3E-10 62.3 10.3 107 21-138 65-176 (245) 254 PLN02668 indole-3-acetate carb 98.0 0.0054 1.2E-07 54.4 23.2 215 35-250 64-381 (386) 255 PF03492 Methyltransf_7: SAM d 98.0 0.001 2.2E-08 58.3 18.2 216 23-240 5-316 (334) 256 COG4262 Predicted spermidine s 98.0 6.5E-05 1.4E-09 64.8 10.2 109 33-141 288-408 (508) 257 PF06962 rRNA_methylase: Putat 98.0 2.7E-05 5.9E-10 58.8 6.8 115 59-193 1-127 (140) 258 COG4798 Predicted methyltransf 97.9 9.8E-05 2.1E-09 58.3 9.5 155 25-192 39-206 (238) 259 KOG2798 Putative trehalase [Ca 97.9 0.00033 7.2E-09 59.3 13.0 149 35-196 151-342 (369) 260 KOG3115 Methyltransferase-like 97.8 7.9E-05 1.7E-09 59.2 7.1 106 34-139 60-182 (249) 261 PF04445 SAM_MT: Putative SAM- 97.7 0.0001 2.2E-09 60.6 6.9 90 24-114 63-164 (234) 262 COG5459 Predicted rRNA methyla 97.7 0.00018 3.9E-09 61.8 7.8 113 33-146 112-231 (484) 263 KOG4589 Cell division protein 97.6 0.00047 1E-08 54.2 8.9 102 32-145 67-189 (232) 264 KOG1501 Arginine N-methyltrans 97.6 0.00013 2.9E-09 64.3 5.9 73 36-108 68-142 (636) 265 PF01861 DUF43: Protein of unk 97.6 0.022 4.8E-07 47.0 18.4 108 24-138 35-147 (243) 266 KOG2198 tRNA cytosine-5-methyl 97.5 0.0015 3.2E-08 56.9 11.2 117 29-146 150-302 (375) 267 PF03141 Methyltransf_29: Puta 97.5 7E-05 1.5E-09 67.4 3.0 99 34-141 365-468 (506) 268 KOG2352 Predicted spermine/spe 97.5 0.00069 1.5E-08 60.9 9.2 106 34-141 47-162 (482) 269 KOG1596 Fibrillarin and relate 97.5 0.00039 8.4E-09 56.8 6.8 106 28-140 150-261 (317) 270 COG1064 AdhP Zn-dependent alco 97.4 0.0025 5.3E-08 55.5 11.5 100 27-142 159-261 (339) 271 PF04989 CmcI: Cephalosporin h 97.4 0.00035 7.6E-09 56.3 5.5 111 24-142 25-149 (206) 272 PF11599 AviRa: RRNA methyltra 97.3 0.0039 8.4E-08 50.2 10.9 116 24-139 41-213 (246) 273 COG0286 HsdM Type I restrictio 97.3 0.0035 7.5E-08 57.9 12.0 115 24-138 176-324 (489) 274 KOG0822 Protein kinase inhibit 97.3 0.00085 1.8E-08 60.7 7.6 134 3-138 333-476 (649) 275 TIGR00027 mthyl_TIGR00027 meth 97.2 0.014 2.9E-07 49.4 13.8 121 21-142 68-199 (260) 276 COG3129 Predicted SAM-dependen 97.1 0.0012 2.7E-08 53.6 6.1 112 3-114 38-166 (292) 277 KOG2793 Putative N2,N2-dimethy 97.1 0.0067 1.4E-07 50.5 10.6 103 34-139 86-198 (248) 278 PF02005 TRM: N2,N2-dimethylgu 97.1 0.0016 3.6E-08 57.8 7.5 102 34-141 49-155 (377) 279 PF01795 Methyltransf_5: MraW 97.1 0.00051 1.1E-08 59.0 4.1 86 23-110 9-102 (310) 280 COG0275 Predicted S-adenosylme 97.1 0.0053 1.2E-07 52.1 9.5 88 22-111 11-106 (314) 281 PRK09424 pntA NAD(P) transhydr 97.0 0.0069 1.5E-07 55.9 10.8 100 32-141 162-286 (509) 282 KOG3924 Putative protein methy 97.0 0.0041 8.9E-08 54.5 8.4 130 12-144 170-312 (419) 283 KOG2671 Putative RNA methylase 96.9 0.0037 8E-08 53.8 7.1 114 27-141 201-355 (421) 284 PHA01634 hypothetical protein 96.9 0.0089 1.9E-07 44.1 7.9 77 27-107 22-98 (156) 285 COG4627 Uncharacterized protei 96.8 0.00038 8.3E-09 52.9 0.2 45 98-142 44-88 (185) 286 PRK09880 L-idonate 5-dehydroge 96.7 0.015 3.3E-07 51.1 10.1 102 27-140 162-266 (343) 287 KOG1562 Spermidine synthase [A 96.7 0.0068 1.5E-07 51.2 7.2 109 32-140 119-236 (337) 288 KOG2651 rRNA adenine N-6-methy 96.6 0.011 2.3E-07 51.7 7.9 61 16-76 134-195 (476) 289 PRK11524 putative methyltransf 96.6 0.01 2.3E-07 50.8 8.0 61 17-79 192-252 (284) 290 COG1565 Uncharacterized conser 96.5 0.021 4.6E-07 49.8 8.9 63 18-80 61-132 (370) 291 COG3510 CmcI Cephalosporin hyd 96.5 0.015 3.2E-07 46.1 7.1 104 34-145 69-185 (237) 292 PF06859 Bin3: Bicoid-interact 96.4 0.0024 5.1E-08 45.9 2.4 39 101-139 1-43 (110) 293 PRK01747 mnmC bifunctional tRN 96.4 0.036 7.7E-07 53.4 11.1 134 3-137 23-203 (662) 294 PF01555 N6_N4_Mtase: DNA meth 96.3 0.015 3.2E-07 47.6 7.1 57 17-75 175-231 (231) 295 cd08283 FDH_like_1 Glutathione 96.3 0.075 1.6E-06 47.6 11.9 108 28-139 178-305 (386) 296 PRK13699 putative methylase; P 96.3 0.025 5.3E-07 46.9 8.0 61 18-80 148-208 (227) 297 PF02636 Methyltransf_28: Puta 96.2 0.02 4.2E-07 48.2 7.4 88 25-116 8-110 (252) 298 COG4301 Uncharacterized conser 96.1 0.096 2.1E-06 43.4 10.5 108 32-139 76-192 (321) 299 PTZ00357 methyltransferase; Pr 96.1 0.054 1.2E-06 51.1 10.1 98 37-135 703-830 (1072) 300 cd08254 hydroxyacyl_CoA_DH 6-h 96.1 0.051 1.1E-06 47.2 9.5 96 29-139 160-262 (338) 301 COG1867 TRM1 N2,N2-dimethylgua 96.0 0.063 1.4E-06 47.0 9.3 100 35-141 53-155 (380) 302 COG1063 Tdh Threonine dehydrog 95.9 0.2 4.3E-06 44.4 12.6 98 32-144 166-273 (350) 303 TIGR02822 adh_fam_2 zinc-bindi 95.9 0.13 2.9E-06 44.9 11.5 95 28-140 159-254 (329) 304 KOG1099 SAM-dependent methyltr 95.8 0.031 6.7E-07 45.6 6.1 93 35-139 42-162 (294) 305 PF10354 DUF2431: Domain of un 95.8 0.18 3.9E-06 39.6 10.4 128 41-194 3-155 (166) 306 KOG1253 tRNA methyltransferase 95.7 0.0091 2E-07 53.9 3.3 101 34-140 109-216 (525) 307 KOG0024 Sorbitol dehydrogenase 95.7 0.15 3.3E-06 43.9 10.3 108 25-145 160-278 (354) 308 cd08230 glucose_DH Glucose deh 95.7 0.11 2.5E-06 45.7 10.2 98 30-140 168-269 (355) 309 cd08237 ribitol-5-phosphate_DH 95.6 0.12 2.5E-06 45.5 9.8 95 30-140 159-256 (341) 310 PF11899 DUF3419: Protein of u 95.6 0.037 8.1E-07 49.3 6.6 65 80-145 272-339 (380) 311 cd08239 THR_DH_like L-threonin 95.6 0.07 1.5E-06 46.7 8.4 98 27-139 156-261 (339) 312 TIGR00561 pntA NAD(P) transhyd 95.6 0.059 1.3E-06 49.8 8.0 94 34-137 163-281 (511) 313 PF03269 DUF268: Caenorhabditi 95.6 0.012 2.6E-07 45.3 2.9 102 35-145 2-116 (177) 314 KOG2920 Predicted methyltransf 95.6 0.014 3.1E-07 49.1 3.7 116 21-138 100-232 (282) 315 KOG2078 tRNA modification enzy 95.5 0.014 3E-07 51.8 3.6 64 32-96 247-311 (495) 316 COG3315 O-Methyltransferase in 95.5 0.14 3E-06 44.2 9.6 122 18-140 76-209 (297) 317 TIGR03451 mycoS_dep_FDH mycoth 95.5 0.089 1.9E-06 46.5 8.8 99 27-140 169-276 (358) 318 cd08281 liver_ADH_like1 Zinc-d 95.3 0.11 2.3E-06 46.3 8.7 99 26-139 183-289 (371) 319 cd00315 Cyt_C5_DNA_methylase C 95.3 0.046 1E-06 46.6 6.1 69 37-113 2-74 (275) 320 KOG1227 Putative methyltransfe 95.3 0.0082 1.8E-07 50.8 1.4 75 34-108 194-269 (351) 321 PF00107 ADH_zinc_N: Zinc-bind 95.2 0.083 1.8E-06 39.2 6.6 84 44-142 1-91 (130) 322 COG0604 Qor NADPH:quinone redu 95.1 0.25 5.5E-06 43.2 10.4 103 24-139 132-240 (326) 323 TIGR03366 HpnZ_proposed putati 95.1 0.15 3.4E-06 43.3 8.9 99 27-140 113-218 (280) 324 cd05188 MDR Medium chain reduc 95.0 0.13 2.8E-06 42.9 8.0 97 28-139 127-231 (271) 325 PF02254 TrkA_N: TrkA-N domain 95.0 0.2 4.4E-06 36.3 8.1 84 43-139 4-95 (116) 326 TIGR02825 B4_12hDH leukotriene 94.9 0.29 6.2E-06 42.5 10.1 98 26-139 130-236 (325) 327 PF05711 TylF: Macrocin-O-meth 94.8 0.16 3.5E-06 42.5 7.8 126 14-143 53-215 (248) 328 cd08232 idonate-5-DH L-idonate 94.7 0.27 5.9E-06 42.9 9.5 96 28-138 159-260 (339) 329 PLN03154 putative allyl alcoho 94.6 0.33 7.1E-06 42.8 9.8 97 28-139 152-257 (348) 330 PLN02740 Alcohol dehydrogenase 94.6 0.31 6.7E-06 43.5 9.8 98 27-139 191-299 (381) 331 cd08294 leukotriene_B4_DH_like 94.4 0.32 6.9E-06 42.1 9.2 97 27-139 136-240 (329) 332 COG1568 Predicted methyltransf 94.4 0.2 4.3E-06 42.2 7.3 101 34-139 152-259 (354) 333 TIGR03201 dearomat_had 6-hydro 94.3 0.46 1E-05 41.8 10.0 101 28-140 160-272 (349) 334 PF07757 AdoMet_MTase: Predict 94.3 0.12 2.5E-06 37.1 4.9 32 33-65 57-88 (112) 335 PF07279 DUF1442: Protein of u 94.2 1 2.2E-05 36.6 10.6 108 25-139 31-147 (218) 336 PRK10309 galactitol-1-phosphat 94.1 0.41 8.9E-06 42.0 9.3 97 28-139 154-259 (347) 337 KOG2912 Predicted DNA methylas 94.1 0.14 3.1E-06 43.8 5.9 75 38-112 106-189 (419) 338 cd08261 Zn_ADH7 Alcohol dehydr 94.1 0.16 3.4E-06 44.4 6.6 99 28-138 153-256 (337) 339 PF04072 LCM: Leucine carboxyl 93.8 0.28 6.1E-06 39.1 6.9 92 34-126 77-182 (183) 340 cd08255 2-desacetyl-2-hydroxye 93.6 0.87 1.9E-05 38.3 10.2 97 28-139 91-189 (277) 341 TIGR02818 adh_III_F_hyde S-(hy 93.6 0.97 2.1E-05 40.1 10.8 102 27-140 178-287 (368) 342 cd08295 double_bond_reductase_ 93.6 0.8 1.7E-05 40.0 10.1 100 28-139 145-250 (338) 343 cd08245 CAD Cinnamyl alcohol d 93.3 1.1 2.3E-05 38.9 10.5 97 28-139 156-255 (330) 344 PLN02827 Alcohol dehydrogenase 93.3 0.6 1.3E-05 41.7 9.0 97 28-139 187-294 (378) 345 COG2933 Predicted SAM-dependen 93.3 0.44 9.5E-06 39.9 7.3 88 31-133 208-296 (358) 346 TIGR01202 bchC 2-desacetyl-2-h 93.2 0.54 1.2E-05 40.6 8.3 87 33-140 143-231 (308) 347 PF12692 Methyltransf_17: S-ad 93.2 0.35 7.5E-06 36.8 6.0 112 17-138 12-132 (160) 348 cd08300 alcohol_DH_class_III c 93.1 1.1 2.3E-05 39.8 10.3 99 27-140 179-288 (368) 349 PRK05476 S-adenosyl-L-homocyst 93.1 0.9 2E-05 41.2 9.7 97 23-139 199-298 (425) 350 COG0686 Ald Alanine dehydrogen 93.1 0.32 6.9E-06 41.8 6.3 98 34-138 167-266 (371) 351 PF11899 DUF3419: Protein of u 93.1 0.34 7.4E-06 43.3 6.9 52 26-78 27-78 (380) 352 cd08236 sugar_DH NAD(P)-depend 93.0 0.34 7.4E-06 42.3 6.9 97 28-139 153-257 (343) 353 cd08293 PTGR2 Prostaglandin re 92.8 0.85 1.8E-05 39.8 9.1 97 28-139 146-253 (345) 354 cd08234 threonine_DH_like L-th 92.7 2 4.4E-05 37.2 11.4 97 28-139 153-256 (334) 355 PRK11524 putative methyltransf 92.7 0.12 2.5E-06 44.4 3.4 55 85-139 8-79 (284) 356 cd05285 sorbitol_DH Sorbitol d 92.7 0.95 2.1E-05 39.6 9.3 97 28-139 156-264 (343) 357 cd08242 MDR_like Medium chain 92.7 2.4 5.3E-05 36.5 11.7 96 26-138 147-243 (319) 358 cd00401 AdoHcyase S-adenosyl-L 92.3 1.5 3.2E-05 39.7 10.0 98 23-140 189-289 (413) 359 cd08277 liver_alcohol_DH_like 92.3 1.4 2.9E-05 39.1 9.8 100 27-139 177-285 (365) 360 cd08301 alcohol_DH_plants Plan 92.2 1.5 3.3E-05 38.8 10.1 100 26-140 179-289 (369) 361 cd08285 NADP_ADH NADP(H)-depen 92.1 0.95 2.1E-05 39.7 8.6 98 27-139 159-265 (351) 362 KOG1197 Predicted quinone oxid 92.1 2.6 5.7E-05 35.4 10.2 114 11-137 117-242 (336) 363 KOG0821 Predicted ribosomal RN 92.1 0.49 1.1E-05 38.6 5.9 73 23-97 39-111 (326) 364 PRK03659 glutathione-regulated 91.9 0.86 1.9E-05 43.5 8.5 89 36-139 401-497 (601) 365 PF05430 Methyltransf_30: S-ad 91.9 0.21 4.6E-06 37.1 3.6 79 85-193 32-113 (124) 366 cd08233 butanediol_DH_like (2R 91.9 1.2 2.7E-05 39.0 9.1 100 28-139 166-271 (351) 367 cd05278 FDH_like Formaldehyde 91.8 0.51 1.1E-05 41.2 6.5 99 29-139 162-266 (347) 368 PF05206 TRM13: Methyltransfer 91.8 0.83 1.8E-05 38.6 7.3 75 22-97 6-86 (259) 369 TIGR00497 hsdM type I restrict 91.7 3.2 6.9E-05 38.7 11.8 105 34-138 217-353 (501) 370 PF00145 DNA_methylase: C-5 cy 91.6 0.48 1E-05 41.0 6.1 68 37-113 2-73 (335) 371 PLN02494 adenosylhomocysteinas 91.6 1.1 2.5E-05 41.0 8.5 98 23-139 241-340 (477) 372 cd08231 MDR_TM0436_like Hypoth 91.5 1.6 3.5E-05 38.4 9.4 100 28-139 170-279 (361) 373 KOG0023 Alcohol dehydrogenase, 91.5 1.9 4.1E-05 37.4 9.1 102 27-141 174-280 (360) 374 COG0287 TyrA Prephenate dehydr 91.2 1.4 3E-05 37.7 8.2 89 36-137 4-95 (279) 375 TIGR02819 fdhA_non_GSH formald 91.2 2.8 6.1E-05 37.7 10.7 107 28-141 179-300 (393) 376 cd08298 CAD2 Cinnamyl alcohol 91.1 6.4 0.00014 34.0 12.6 95 28-140 161-256 (329) 377 PRK03562 glutathione-regulated 91.0 2.3 5.1E-05 40.7 10.4 92 35-139 400-497 (621) 378 TIGR00936 ahcY adenosylhomocys 90.9 2.3 5E-05 38.4 9.6 96 24-139 183-281 (406) 379 PF05050 Methyltransf_21: Meth 90.9 0.81 1.8E-05 35.2 6.1 54 40-93 1-61 (167) 380 KOG1201 Hydroxysteroid 17-beta 90.8 2.5 5.5E-05 36.2 9.2 74 34-111 37-124 (300) 381 COG5379 BtaA S-adenosylmethion 90.8 0.79 1.7E-05 39.1 6.1 48 30-78 59-106 (414) 382 cd08296 CAD_like Cinnamyl alco 90.7 1.7 3.7E-05 37.8 8.7 97 28-139 157-258 (333) 383 KOG2352 Predicted spermine/spe 90.6 0.39 8.5E-06 43.6 4.5 112 34-146 295-422 (482) 384 cd08279 Zn_ADH_class_III Class 90.5 0.88 1.9E-05 40.2 6.7 98 27-139 175-281 (363) 385 KOG2918 Carboxymethyl transfer 90.4 11 0.00024 32.6 13.1 165 23-194 78-280 (335) 386 TIGR00675 dcm DNA-methyltransf 90.2 0.83 1.8E-05 39.8 6.1 68 38-113 1-71 (315) 387 PRK10669 putative cation:proto 90.1 1.7 3.7E-05 41.0 8.6 88 36-138 418-513 (558) 388 PLN02586 probable cinnamyl alc 90.1 3 6.5E-05 36.9 9.8 94 32-139 181-277 (360) 389 cd08286 FDH_like_ADH2 formalde 89.9 4.1 8.8E-05 35.5 10.4 99 28-138 160-264 (345) 390 cd08238 sorbose_phosphate_red 89.8 3.9 8.5E-05 36.9 10.4 100 29-138 170-286 (410) 391 PF03514 GRAS: GRAS domain fam 89.7 5.4 0.00012 35.7 11.0 112 24-138 100-242 (374) 392 COG4017 Uncharacterized protei 89.7 1.5 3.2E-05 35.1 6.4 106 16-143 26-132 (254) 393 PRK10458 DNA cytosine methylas 89.5 1.9 4E-05 39.8 8.0 81 14-97 64-147 (467) 394 cd08265 Zn_ADH3 Alcohol dehydr 89.4 6.4 0.00014 35.1 11.5 99 30-139 199-306 (384) 395 PLN02514 cinnamyl-alcohol dehy 89.4 6.8 0.00015 34.6 11.5 95 32-139 178-274 (357) 396 KOG2539 Mitochondrial/chloropl 89.3 2.1 4.6E-05 38.9 7.9 111 33-144 199-319 (491) 397 cd05281 TDH Threonine dehydrog 89.3 1.5 3.2E-05 38.3 7.1 96 32-139 161-261 (341) 398 cd08278 benzyl_alcohol_DH Benz 89.1 1 2.2E-05 39.9 6.1 97 28-139 180-284 (365) 399 COG0541 Ffh Signal recognition 89.1 4.2 9E-05 36.8 9.6 109 34-146 99-227 (451) 400 TIGR00518 alaDH alanine dehydr 88.9 1.2 2.6E-05 39.7 6.3 98 34-138 166-265 (370) 401 COG1062 AdhC Zn-dependent alco 88.9 4.7 0.0001 35.3 9.5 106 25-145 176-290 (366) 402 PRK08306 dipicolinate synthase 88.8 4.4 9.5E-05 35.0 9.5 94 26-137 142-238 (296) 403 PRK13699 putative methylase; P 88.6 0.38 8.3E-06 39.8 2.7 52 87-138 3-70 (227) 404 cd08235 iditol_2_DH_like L-idi 88.6 1.4 3E-05 38.4 6.5 97 28-139 159-264 (343) 405 cd05279 Zn_ADH1 Liver alcohol 88.6 3.4 7.4E-05 36.5 9.0 100 27-139 176-284 (365) 406 PRK07417 arogenate dehydrogena 88.3 3.5 7.6E-05 35.1 8.5 84 37-136 2-87 (279) 407 PRK05786 fabG 3-ketoacyl-(acyl 88.3 12 0.00027 30.4 11.7 103 34-140 4-135 (238) 408 cd08241 QOR1 Quinone oxidoredu 88.2 2.8 6E-05 35.7 8.0 98 29-139 134-237 (323) 409 PRK07533 enoyl-(acyl carrier p 87.9 13 0.00027 31.1 11.6 103 34-139 9-147 (258) 410 PF10237 N6-adenineMlase: Prob 87.6 11 0.00024 29.4 10.1 93 34-139 25-122 (162) 411 cd08266 Zn_ADH_like1 Alcohol d 87.5 2.9 6.2E-05 36.0 7.8 98 27-139 159-264 (342) 412 COG1748 LYS9 Saccharopine dehy 87.4 3.4 7.3E-05 37.0 8.0 72 36-112 2-79 (389) 413 PF02153 PDH: Prephenate dehyd 87.3 1.8 4E-05 36.5 6.2 74 49-137 2-76 (258) 414 COG5379 BtaA S-adenosylmethion 87.2 1.5 3.2E-05 37.5 5.3 73 61-139 290-365 (414) 415 PRK10083 putative oxidoreducta 87.0 3.9 8.5E-05 35.5 8.3 102 26-139 152-258 (339) 416 TIGR00692 tdh L-threonine 3-de 87.0 1.7 3.6E-05 38.0 6.0 96 32-139 159-260 (340) 417 cd08260 Zn_ADH6 Alcohol dehydr 87.0 4.8 0.0001 35.1 8.9 95 28-138 159-262 (345) 418 cd05283 CAD1 Cinnamyl alcohol 86.9 8 0.00017 33.6 10.2 97 28-139 163-262 (337) 419 PF02737 3HCDH_N: 3-hydroxyacy 86.8 8.9 0.00019 30.4 9.5 99 37-143 1-117 (180) 420 PLN02178 cinnamyl-alcohol dehy 86.8 3.5 7.6E-05 36.8 8.0 92 33-139 177-272 (375) 421 KOG2360 Proliferation-associat 86.6 2 4.3E-05 38.0 6.0 69 28-97 207-277 (413) 422 cd08263 Zn_ADH10 Alcohol dehyd 86.4 2.6 5.7E-05 37.2 7.0 94 31-139 184-286 (367) 423 COG0863 DNA modification methy 86.3 4 8.8E-05 34.9 7.9 61 18-80 207-267 (302) 424 cd08243 quinone_oxidoreductase 86.1 17 0.00038 30.8 11.9 96 30-139 138-237 (320) 425 cd08284 FDH_like_2 Glutathione 85.9 14 0.00031 32.0 11.3 95 28-138 161-264 (344) 426 PF11312 DUF3115: Protein of u 85.8 3.1 6.8E-05 35.9 6.7 108 36-143 88-245 (315) 427 cd08270 MDR4 Medium chain dehy 85.7 13 0.00029 31.4 10.8 94 28-139 126-221 (305) 428 cd08282 PFDH_like Pseudomonas 85.6 18 0.00038 32.1 11.9 107 28-140 170-285 (375) 429 COG0270 Dcm Site-specific DNA 85.4 2.8 6.2E-05 36.7 6.5 74 35-114 3-80 (328) 430 cd08291 ETR_like_1 2-enoyl thi 85.3 15 0.00032 31.8 11.0 90 34-139 142-241 (324) 431 PRK15001 SAM-dependent 23S rib 85.1 13 0.00028 33.3 10.5 112 15-140 28-142 (378) 432 cd08240 6_hydroxyhexanoate_dh_ 85.0 16 0.00035 31.9 11.2 93 32-139 173-273 (350) 433 cd08274 MDR9 Medium chain dehy 85.0 13 0.00027 32.4 10.6 94 28-138 171-271 (350) 434 PF01210 NAD_Gly3P_dh_N: NAD-d 85.0 4.3 9.3E-05 31.3 6.8 93 37-138 1-101 (157) 435 COG2130 Putative NADP-dependen 85.0 6.3 0.00014 34.0 8.0 103 25-139 141-248 (340) 436 cd08267 MDR1 Medium chain dehy 84.9 17 0.00038 30.8 11.2 96 32-139 141-239 (319) 437 cd08287 FDH_like_ADH3 formalde 84.8 3.4 7.4E-05 36.0 6.8 96 29-139 163-267 (345) 438 cd08297 CAD3 Cinnamyl alcohol 84.4 3.4 7.4E-05 35.9 6.7 96 29-139 160-264 (341) 439 PTZ00075 Adenosylhomocysteinas 84.4 3.4 7.3E-05 38.0 6.6 96 24-139 242-340 (476) 440 PRK09496 trkA potassium transp 84.2 16 0.00034 33.4 11.2 88 37-138 2-97 (453) 441 PRK11154 fadJ multifunctional 84.2 16 0.00034 35.8 11.6 151 36-193 310-492 (708) 442 cd05286 QOR2 Quinone oxidoredu 84.2 3.3 7.1E-05 35.1 6.4 96 28-139 130-234 (320) 443 cd08269 Zn_ADH9 Alcohol dehydr 84.0 4.5 9.7E-05 34.5 7.1 97 28-139 123-228 (312) 444 PRK05708 2-dehydropantoate 2-r 83.9 9.4 0.0002 33.0 9.1 94 36-138 3-102 (305) 445 KOG1198 Zinc-binding oxidoredu 83.7 6.8 0.00015 34.7 8.1 91 14-108 131-232 (347) 446 PLN03209 translocon at the inn 83.6 7.1 0.00015 36.9 8.5 81 29-110 74-168 (576) 447 COG1255 Uncharacterized protei 83.5 15 0.00033 26.8 8.3 84 37-140 16-102 (129) 448 KOG1098 Putative SAM-dependent 83.5 1.1 2.3E-05 42.1 3.0 36 32-67 42-79 (780) 449 PRK12939 short chain dehydroge 83.3 18 0.00039 29.6 10.4 74 34-110 6-93 (250) 450 cd05284 arabinose_DH_like D-ar 83.3 5.5 0.00012 34.5 7.5 94 31-139 164-265 (340) 451 PTZ00354 alcohol dehydrogenase 83.2 21 0.00045 30.6 11.1 97 30-139 136-239 (334) 452 PF02558 ApbA: Ketopantoate re 83.2 10 0.00022 28.7 8.1 86 38-138 1-99 (151) 453 PRK09496 trkA potassium transp 83.1 31 0.00068 31.4 12.7 67 34-108 230-304 (453) 454 PF03686 UPF0146: Uncharacteri 83.1 6 0.00013 29.4 6.3 87 36-142 15-104 (127) 455 KOG2782 Putative SAM dependent 83.0 0.67 1.4E-05 37.8 1.4 91 23-114 32-131 (303) 456 cd08244 MDR_enoyl_red Possible 82.9 3.7 7.9E-05 35.3 6.2 97 27-139 135-240 (324) 457 PRK05225 ketol-acid reductoiso 82.7 1.9 4.2E-05 39.3 4.3 91 33-140 34-131 (487) 458 PRK05396 tdh L-threonine 3-deh 82.6 8.2 0.00018 33.6 8.4 93 33-140 162-263 (341) 459 PRK07984 enoyl-(acyl carrier p 82.5 28 0.00061 29.2 11.5 74 34-111 5-94 (262) 460 PF07109 Mg-por_mtran_C: Magne 82.4 3.4 7.4E-05 29.1 4.6 80 109-197 3-88 (97) 461 cd05288 PGDH Prostaglandin deh 82.3 15 0.00033 31.5 9.9 95 30-139 141-243 (329) 462 PRK07502 cyclohexadienyl dehyd 82.1 13 0.00027 32.2 9.2 88 35-137 6-97 (307) 463 PRK08507 prephenate dehydrogen 82.1 12 0.00026 31.8 8.9 84 37-137 2-88 (275) 464 PRK05854 short chain dehydroge 81.9 14 0.00031 31.8 9.5 77 34-111 13-103 (313) 465 cd05289 MDR_like_2 alcohol deh 81.6 27 0.00059 29.3 11.1 91 32-139 142-237 (309) 466 PF12242 Eno-Rase_NADH_b: NAD( 81.6 10 0.00022 25.5 6.3 45 21-65 25-72 (78) 467 cd08292 ETR_like_2 2-enoyl thi 81.5 3.7 8E-05 35.3 5.7 96 28-139 133-237 (324) 468 PRK06522 2-dehydropantoate 2-r 81.5 21 0.00045 30.5 10.3 92 37-138 2-98 (304) 469 PRK07066 3-hydroxybutyryl-CoA 81.4 13 0.00027 32.6 8.9 95 36-137 8-116 (321) 470 PLN02702 L-idonate 5-dehydroge 81.4 12 0.00027 32.8 9.1 100 28-139 175-284 (364) 471 PRK08293 3-hydroxybutyryl-CoA 81.3 18 0.00039 30.9 9.8 96 36-138 4-118 (287) 472 PRK06139 short chain dehydroge 80.9 18 0.00039 31.7 9.8 74 34-110 6-93 (330) 473 cd08250 Mgc45594_like Mgc45594 80.6 36 0.00078 29.2 11.7 94 29-138 134-235 (329) 474 PRK07454 short chain dehydroge 80.5 16 0.00035 29.8 9.0 75 34-111 5-93 (241) 475 cd05213 NAD_bind_Glutamyl_tRNA 80.4 29 0.00063 30.1 10.8 102 29-146 172-277 (311) 476 PRK13771 putative alcohol dehy 80.3 15 0.00034 31.6 9.2 97 28-139 156-254 (334) 477 PRK08594 enoyl-(acyl carrier p 80.2 33 0.00071 28.5 11.1 76 34-110 6-96 (257) 478 cd05282 ETR_like 2-enoyl thioe 80.2 5.7 0.00012 34.0 6.4 92 31-138 135-235 (323) 479 PRK14620 NAD(P)H-dependent gly 80.2 17 0.00036 31.7 9.4 94 37-138 2-104 (326) 480 PRK07063 short chain dehydroge 80.0 15 0.00033 30.4 8.8 77 34-111 6-96 (260) 481 PRK09422 ethanol-active dehydr 79.9 16 0.00034 31.6 9.1 97 28-139 156-260 (338) 482 PLN02989 cinnamyl-alcohol dehy 79.7 10 0.00022 32.7 7.9 77 34-111 4-87 (325) 483 PRK08265 short chain dehydroge 79.5 35 0.00075 28.4 11.1 71 34-110 5-89 (261) 484 PRK09291 short chain dehydroge 79.5 16 0.00035 30.1 8.8 72 36-110 3-82 (257) 485 TIGR02817 adh_fam_1 zinc-bindi 79.4 18 0.00038 31.3 9.3 96 28-138 137-245 (336) 486 PRK08213 gluconate 5-dehydroge 79.2 16 0.00034 30.3 8.6 75 34-111 11-99 (259) 487 PRK07819 3-hydroxybutyryl-CoA 79.2 19 0.0004 30.9 9.1 100 36-143 6-124 (286) 488 PRK08324 short chain dehydroge 78.8 22 0.00048 34.5 10.5 73 34-110 421-507 (681) 489 PF02826 2-Hacid_dh_C: D-isome 78.7 1.8 3.9E-05 34.2 2.6 89 34-137 35-124 (178) 490 PRK06124 gluconate 5-dehydroge 78.6 17 0.00037 30.0 8.6 74 34-110 10-97 (256) 491 PF03721 UDPG_MGDP_dh_N: UDP-g 78.5 7.4 0.00016 31.0 6.0 99 36-138 1-118 (185) 492 cd08289 MDR_yhfp_like Yhfp put 78.3 13 0.00028 31.9 8.1 89 34-139 146-242 (326) 493 cd08268 MDR2 Medium chain dehy 78.2 13 0.00029 31.5 8.1 95 29-139 139-242 (328) 494 PRK06249 2-dehydropantoate 2-r 78.1 12 0.00026 32.5 7.7 92 35-138 5-104 (313) 495 cd08253 zeta_crystallin Zeta-c 78.1 9.7 0.00021 32.3 7.2 94 29-138 139-241 (325) 496 PRK10754 quinone oxidoreductas 77.9 44 0.00095 28.6 12.1 94 30-139 136-238 (327) 497 cd01065 NAD_bind_Shikimate_DH 77.8 28 0.0006 26.3 9.6 81 27-113 10-93 (155) 498 cd08258 Zn_ADH4 Alcohol dehydr 77.8 17 0.00037 31.1 8.7 100 27-139 157-263 (306) 499 TIGR02824 quinone_pig3 putativ 77.8 29 0.00063 29.3 10.1 97 27-139 132-237 (325) 500 PRK11064 wecC UDP-N-acetyl-D-m 77.8 11 0.00024 34.2 7.6 95 36-141 4-120 (415) No 1 >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction:S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D .... Probab=100.00 E-value=7.3e-52 Score=349.20 Aligned_cols=244 Identities=50% Similarity=0.880 Sum_probs=203.6 Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272) Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272) |+||||+|.+++++|++||.++++.+++++++++|++|||||||+|+++..++++.+++|+|+++|+++.+.++++++.. T Consensus 29 m~YS~~~~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~ 108 (273) T PF02353_consen 29 MKYSCAYFDEGDDTLEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREA 108 (273) T ss_dssp ---S----SSTT--HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCS T ss_pred CCCCCeecCCchhhHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhc Confidence 89999999999999999999999999999999999999999999999999999988999999999999999999999999 Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCc-chhhh Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLS-PGFIK 159 (272) Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~~ 159 (272) |+++++++...|..+++ .+||.|+|.++++|++.++.+.+++++.++|||||+++++.++.+.......... ..|+. T Consensus 109 gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~ 186 (273) T PF02353_consen 109 GLEDRVEVRLQDYRDLP--GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIR 186 (273) T ss_dssp TSSSTEEEEES-GGG-----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHH T ss_pred CCCCceEEEEeeccccC--CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEE Confidence 99999999999999877 4999999999999999999999999999999999999999988777654443332 48999 Q ss_pred hcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHh Q 024096 160 EYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFK 239 (272) Q Consensus 160 ~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~ 239 (272) +|+||++.+|+.+++.. ..+++||+|.++++++.||.+|++.|+++|.++++++.++ |++.|+|+|+.|+++|+++|+ T Consensus 187 kyiFPgg~lps~~~~~~-~~~~~~l~v~~~~~~~~hY~~Tl~~W~~~f~~~~~~i~~~-~~~~f~r~w~~yl~~~~~~F~ 264 (273) T PF02353_consen 187 KYIFPGGYLPSLSEILR-AAEDAGLEVEDVENLGRHYARTLRAWRENFDANREEIIAL-FDEEFYRMWRYYLAYCAAGFR 264 (273) T ss_dssp HHTSTTS---BHHHHHH-HHHHTT-EEEEEEE-HHHHHHHHHHHHHHHHHTHHHHHHH-SHHHHHHHHHHHHHHHHHHHH T ss_pred EeeCCCCCCCCHHHHHH-HHhcCCEEEEEEEEcCcCHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHH Confidence 99999999999999986 4556999999999999999999999999999999999998 999999999999999999999 Q ss_pred cCCccEEEE Q 024096 240 SRIIGDYQI 248 (272) Q Consensus 240 ~g~~~~~~~ 248 (272) .|.++.+|| T Consensus 265 ~g~~~~~Q~ 273 (273) T PF02353_consen 265 AGSIDVFQI 273 (273) T ss_dssp TTSCEEEEE T ss_pred CCCCeEEeC Confidence 999999997 No 2 >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] Probab=100.00 E-value=1.3e-50 Score=336.34 Aligned_cols=245 Identities=42% Similarity=0.797 Sum_probs=232.9 Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272) Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272) |+|||+||++++.+|++||..+++.+++++.++||++|||||||+|.+++++|++.+++|+|+++|++|.+.++++++.. T Consensus 39 ~~Yscayf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~ 118 (283) T COG2230 39 MTYSCAYFEDPDMTLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR 118 (283) T ss_pred CceeeEEeCCCCCChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc Confidence 89999999999999999999999999999999999999999999999999999998999999999999999999999999 Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhh Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKE 160 (272) Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 160 (272) |++++++++..|..++. +.||.|+|.++++|++.++.+.+++++.++|+|||++++++++.++.... ....|+.+ T Consensus 119 gl~~~v~v~l~d~rd~~--e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~---~~~~~i~~ 193 (283) T COG2230 119 GLEDNVEVRLQDYRDFE--EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR---RFPDFIDK 193 (283) T ss_pred CCCcccEEEeccccccc--cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc---cchHHHHH Confidence 99989999999999987 45999999999999999999999999999999999999999998776543 56789999 Q ss_pred cccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhc Q 024096 161 YIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240 (272) Q Consensus 161 ~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~ 240 (272) |+||++.+|+...+... .+++||.|...+.++.||.+|+..|.++|+++++++.++ +++.++++|+.|+..|+.+|+. T Consensus 194 yiFPgG~lPs~~~i~~~-~~~~~~~v~~~~~~~~hYa~Tl~~W~~~f~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~ 271 (283) T COG2230 194 YIFPGGELPSISEILEL-ASEAGFVVLDVESLRPHYARTLRLWRERFEANRDEAIAL-YDERFYRMWELYLAACAAAFRA 271 (283) T ss_pred hCCCCCcCCCHHHHHHH-HHhcCcEEehHhhhcHHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhcc Confidence 99999999999998855 557999999999999999999999999999999999988 9999999999999999999999 Q ss_pred CCccEEEEEEEe Q 024096 241 RIIGDYQIVFSR 252 (272) Q Consensus 241 g~~~~~~~~~~k 252 (272) |.+..+|+++.| T Consensus 272 ~~~~~~q~~~~k 283 (283) T COG2230 272 GYIDVFQFTLTK 283 (283) T ss_pred CCceEEEEEeeC Confidence 999999999976 No 3 >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional Probab=100.00 E-value=4.9e-42 Score=303.10 Aligned_cols=240 Identities=38% Similarity=0.708 Sum_probs=215.6 Q ss_pred CcccccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc Q 024096 1 MTYSCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272) Q Consensus 1 ~~y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272) |+|||++|.. .++|.+||..+++.+++++.+.++.+|||||||+|.++..+++..+++|+|+|+|+.+++.++++.. T Consensus 135 m~ys~g~~~~-~~~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~-- 211 (383) T PRK11705 135 MQYSCGYWKD-ADTLEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA-- 211 (383) T ss_pred CcccccccCC-CCCHHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-- Confidence 7899999975 4799999999999999999999999999999999999999998778899999999999999999874 Q ss_pred CCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhh Q 024096 81 GLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKE 160 (272) Q Consensus 81 g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~ 160 (272) ++ ++++...|..+++ ++||.|++..+++|++.++...+++++.++|||||+++++++..+... .....++.+ T Consensus 212 ~l--~v~~~~~D~~~l~--~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~----~~~~~~i~~ 283 (383) T PRK11705 212 GL--PVEIRLQDYRDLN--GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTD----TNVDPWINK 283 (383) T ss_pred cC--eEEEEECchhhcC--CCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCC----CCCCCCcee Confidence 33 4788888987763 789999999999999888888999999999999999999877644321 223467889 Q ss_pred cccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhc Q 024096 161 YIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKS 240 (272) Q Consensus 161 ~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~ 240 (272) |++|++.+|+.+++... .+ .||.+.++++++.||.+|+..|.++|.++++++.+ +|++.|.|+|++|+.+|+++|+. T Consensus 284 yifp~g~lps~~~i~~~-~~-~~~~v~d~~~~~~hy~~TL~~W~~~f~~~~~~~~~-~~~~~~~r~w~~yl~~~~~~F~~ 360 (383) T PRK11705 284 YIFPNGCLPSVRQIAQA-SE-GLFVMEDWHNFGADYDRTLMAWHENFEAAWPELAD-NYSERFYRMWRYYLLSCAGAFRA 360 (383) T ss_pred eecCCCcCCCHHHHHHH-HH-CCcEEEEEecChhhHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhC Confidence 99999999999997754 44 69999999999999999999999999999999977 79999999999999999999999 Q ss_pred CCccEEEEEEEeCC Q 024096 241 RIIGDYQIVFSRPG 254 (272) Q Consensus 241 g~~~~~~~~~~k~~ 254 (272) |.++.+|++++||+ T Consensus 361 ~~~~~~q~~~~~~~ 374 (383) T PRK11705 361 RDIQLWQVVFSPRG 374 (383) T ss_pred CCceEEEEEEEeCC Confidence 99999999999987 No 4 >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes. Probab=99.97 E-value=1.1e-28 Score=204.43 Aligned_cols=204 Identities=19% Similarity=0.273 Sum_probs=170.8 Q ss_pred CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhcc Q 024096 36 QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHV 114 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~ 114 (272) .+|||||||+|..+..+++. ++++++|+|+|+.+++.+++++...|+.+++++...|+.+.+.+++||+|++..+++|+ T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224) T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224) T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC Confidence 37999999999999999987 56899999999999999999999988888999999998766645689999999999999 Q ss_pred ChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCc Q 024096 115 GHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGI 194 (272) Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~ 194 (272) + +...+++++.++|||||++++.++...... . ....... ..+++..++.+.+ +++||.+.+..+++. T Consensus 81 ~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~--~~~~~~~------~~~~s~~~~~~~l-~~~Gf~~~~~~~~~~ 147 (224) T smart00828 81 K--DKMDLFSNISRHLKDGGHLVLADFIANLLS--A--IEHEETT------SYLVTREEWAELL-ARNNLRVVEGVDASL 147 (224) T ss_pred C--CHHHHHHHHHHHcCCCCEEEEEEcccccCc--c--ccccccc------cccCCHHHHHHHH-HHCCCeEEEeEECcH Confidence 4 568999999999999999999876532110 0 0011111 2357888887555 469999999999999 Q ss_pred cHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCccEEEEEEEeCCC Q 024096 195 HYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFSRPGK 255 (272) Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~~~ 255 (272) +|..++ |..+|.++.+++...++++.+.+.|..|..+|++ |+.|.+++.|++++|+.. T Consensus 148 ~~~~~l--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~ 205 (224) T smart00828 148 EIANFL--YDPGFEDNLERLYQDDLDEVTKRHFRGIANLGKL-LEKGLASYALLIVQKDEF 205 (224) T ss_pred hHhhhc--cChhHHHHHHHhccccchHHHHHHHhhHHHHHHH-HHhchHhhEEEEEecccc Confidence 998755 8899999999998878899899999999888887 999999999999999843 No 5 >PLN02244 tocopherol O-methyltransferase Probab=99.96 E-value=1.6e-27 Score=208.49 Aligned_cols=241 Identities=20% Similarity=0.250 Sum_probs=178.6 Q ss_pred cccccCCC--CCCHHHHHHHHHHHHHHHcCC-----CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHH Q 024096 4 SCAIFKSE--HEDLEVGQMRKVSVLIEKARV-----SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIK 76 (272) Q Consensus 4 ~~~~~~~~--~~~l~~aq~~~~~~l~~~l~~-----~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~ 76 (272) .++||..+ ..++.++|.++++.+++.+.+ .++.+|||||||+|.++..+++..+++|+|+|+|+.+++.++++ T Consensus 81 h~g~~~~~~~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~ 160 (340) T PLN02244 81 HHGYYDPGASRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANAL 160 (340) T ss_pred eeeccCCCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH Confidence 46788764 578999999999999999987 68899999999999999999987688999999999999999999 Q ss_pred HHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc--ccC Q 024096 77 VREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE--YRL 153 (272) Q Consensus 77 ~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~~~ 153 (272) .+..++.+++.++++|+.+++ ++++||+|++..+++|++ +...+++++.++|||||++++.++......... ... T Consensus 161 ~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~ 238 (340) T PLN02244 161 AAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMP--DKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKP 238 (340) T ss_pred HHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccC--CHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCH Confidence 998888778999999999988 678999999999999995 458999999999999999999887643221111 100 Q ss_pred c-----chhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHHHHHhh--HHHHHhccCChHHHHH Q 024096 154 S-----PGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRKNFMGK--QSEILALGFNEKFIRT 226 (272) Q Consensus 154 ~-----~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~ 226 (272) . ......+..|. ..+.+++. .+++++||..+++++++.+..+ .|....... ...+. +....+... T Consensus 239 ~~~~~~~~i~~~~~~p~--~~s~~~~~-~~l~~aGf~~v~~~d~s~~v~~---~~~~~~~~~~~~~~~~--~~~~~~~~~ 310 (340) T PLN02244 239 DEQKLLDKICAAYYLPA--WCSTSDYV-KLAESLGLQDIKTEDWSEHVAP---FWPAVIKSALTLKGLF--GLLTSGWAT 310 (340) T ss_pred HHHHHHHHHHhhccCCC--CCCHHHHH-HHHHHCCCCeeEeeeCcHHHHH---HHHHHHHHhcCHHHHH--HHHHHHHHH Confidence 0 01112222221 23667776 4556799999999998865444 333222111 11111 111223334 Q ss_pred HHHHHH--HHHHHHhcCCccEEEEEEEeCC Q 024096 227 WEYYFD--YCAASFKSRIIGDYQIVFSRPG 254 (272) Q Consensus 227 w~~~~~--~~~~~f~~g~~~~~~~~~~k~~ 254 (272) |+..+. ....+|+.|.+.+..|+++||. T Consensus 311 ~~~~l~~~~~~~~~~~g~~~~~~~~~~kp~ 340 (340) T PLN02244 311 IRGALVMPLMIKGFKKGLIKFAVITCRKPL 340 (340) T ss_pred HhhhhHHHHHHHHHhcCCceeeEEEEeCCC Confidence 554433 5677899999999999999983 No 6 >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Probab=99.96 E-value=2.1e-26 Score=194.69 Aligned_cols=223 Identities=19% Similarity=0.230 Sum_probs=182.0 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272) .....+++.+.+.++.+|||||||+|..+..+++..+++|+|+|+|+.+++.++++... .+++.+.++|+.+.+ ++ T Consensus 39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~ 115 (263) T PTZ00098 39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPE 115 (263) T ss_pred HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCC Confidence 34577888999999999999999999999999876678999999999999999987653 257999999998877 66 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhccc-CCCCCCCHHHHHHHh Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIF-PGGCLPSLGRVTSAM 178 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~l 178 (272) ++||+|++..+++|++.+++..++++++++|||||+++++++....... . ......+.. ....+++.+++.+ + T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~-~ 189 (263) T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--W---DEEFKAYIKKRKYTLIPIQEYGD-L 189 (263) T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--c---HHHHHHHHHhcCCCCCCHHHHHH-H Confidence 8999999999999997667899999999999999999998886543210 1 111111111 1224567778874 5 Q ss_pred hcCCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCccEEEEEEEeC Q 024096 179 TSSSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFSRP 253 (272) Q Consensus 179 ~~~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~ 253 (272) ++++||.++..++++..+...+....+.+.++++++... +++.++..+..-+..+-...+.|.+.+..+.++|| T Consensus 190 l~~aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wg~~~~~~~ 263 (263) T PTZ00098 190 IKSCNFQNVVAKDISDYWLELLQVELKKLEEKKEEFLKL-YSEKEYNSLKDGWTRKIKDTKRKLQKWGYFKAQKM 263 (263) T ss_pred HHHCCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHHHHh-cCHHHHHHHHHHHHHHHHHhhccccccceEeecCC Confidence 557999999999999888888888888888888888875 88888888888888888889999999999999985 No 7 >PLN02336 phosphoethanolamine N-methyltransferase Probab=99.94 E-value=1.2e-24 Score=199.23 Aligned_cols=219 Identities=19% Similarity=0.181 Sum_probs=177.4 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272) .+.+++.+.+.++.+|||||||+|..+..+++..+++++|+|+|+.+++.|+++.. +...++.+.++|+.+.+ ++++ T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~~~~~~ 332 (475) T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKTYPDNS 332 (475) T ss_pred HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCCCCCCC Confidence 45677777788889999999999999999998778899999999999999988765 33457999999998887 5678 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhccc-CCCCCCCHHHHHHHhhc Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIF-PGGCLPSLGRVTSAMTS 180 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~l~~ 180 (272) ||+|++..+++|++ ++..++++++++|||||++++.++........ ..+..++. .+..+++..++.+ +++ T Consensus 333 fD~I~s~~~l~h~~--d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~-~l~ 403 (475) T PLN02336 333 FDVIYSRDTILHIQ--DKPALFRSFFKWLKPGGKVLISDYCRSPGTPS------PEFAEYIKQRGYDLHDVQAYGQ-MLK 403 (475) T ss_pred EEEEEECCcccccC--CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCc------HHHHHHHHhcCCCCCCHHHHHH-HHH Confidence 99999999999994 56899999999999999999998765432211 11112222 2345677888764 556 Q ss_pred CCCcEEEEEEecCccHHHHHHHHHHHHHhhHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCccEEEEEEEeC Q 024096 181 SSGLCVEHLENIGIHYYQTLRCWRKNFMGKQSEILALGFNEKFIRTWEYYFDYCAASFKSRIIGDYQIVFSRP 253 (272) Q Consensus 181 ~~Gf~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~f~~g~~~~~~~~~~k~ 253 (272) ++||.+..+++++.+|..++..|...+.++..++... +++..+......+......++.|.++++.++|+|. T Consensus 404 ~aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~wg~~~a~k~ 475 (475) T PLN02336 404 DAGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISD-FSEEDYNDIVGGWKAKLVRSSSGEQKWGLFIAKKK 475 (475) T ss_pred HCCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHhHHHHHhhhcCCceeeEEEEEecC Confidence 7999999999999999999999999999888887764 77777777666666667777889999999999985 No 8 >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Probab=99.90 E-value=1.4e-22 Score=166.23 Aligned_cols=126 Identities=27% Similarity=0.434 Sum_probs=111.5 Q ss_pred HHHHHH-HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC Q 024096 18 GQMRKV-SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272) Q Consensus 18 aq~~~~-~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272) .++..+ +.+++.+...+|.+|||+|||||..+..+++. ..++|+|+|+|+.|++.++++..+.+..+ ++++++|+++ T Consensus 34 g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~ 112 (238) T COG2226 34 GLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAEN 112 (238) T ss_pred cchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhh Confidence 334444 45566667778999999999999999999998 66899999999999999999999888764 9999999999 Q ss_pred CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC Q 024096 96 LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272) Q Consensus 96 ~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272) +| ++++||+|.+...+++++ +++.+|++++|+|||||++++.++..+.. T Consensus 113 LPf~D~sFD~vt~~fglrnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238) T COG2226 113 LPFPDNSFDAVTISFGLRNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238) T ss_pred CCCCCCccCEEEeeehhhcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCCc Confidence 99 899999999999999995 66999999999999999999988887654 No 9 >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. Probab=99.89 E-value=5.9e-23 Score=169.91 Aligned_cols=130 Identities=28% Similarity=0.406 Sum_probs=91.6 Q ss_pred CHHHHHHHHHH-HHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE Q 024096 14 DLEVGQMRKVS-VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272) Q Consensus 14 ~l~~aq~~~~~-~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272) -+.-.+...++ .+++.+...+|.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|++++...+.. ++++++ T Consensus 26 ~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~ 104 (233) T PF01209_consen 26 LLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQ 104 (233) T ss_dssp -----------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE T ss_pred ccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEE Confidence 33444444443 3555667788999999999999999999887 4579999999999999999999988775 899999 Q ss_pred cccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC Q 024096 91 CDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272) Q Consensus 91 ~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272) +|++++| ++++||+|++...+++++ ++...+++++|+|||||++++.++..|.. T Consensus 105 ~da~~lp~~d~sfD~v~~~fglrn~~--d~~~~l~E~~RVLkPGG~l~ile~~~p~~ 159 (233) T PF01209_consen 105 GDAEDLPFPDNSFDAVTCSFGLRNFP--DRERALREMYRVLKPGGRLVILEFSKPRN 159 (233) T ss_dssp -BTTB--S-TT-EEEEEEES-GGG-S--SHHHHHHHHHHHEEEEEEEEEEEEEB-SS T ss_pred cCHHHhcCCCCceeEEEHHhhHHhhC--CHHHHHHHHHHHcCCCeEEEEeeccCCCC Confidence 9999999 789999999999999995 46889999999999999999999987765 No 10 >PRK14103 trans-aconitate 2-methyltransferase; Provisional Probab=99.87 E-value=2.7e-20 Score=157.08 Aligned_cols=116 Identities=18% Similarity=0.232 Sum_probs=100.6 Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC Q 024096 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94 (272) Q Consensus 16 ~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 94 (272) ...+......+++.+...++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.+++. +++++++|+. T Consensus 11 ~~~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~ 82 (255) T PRK14103 11 ADHRGRPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVR 82 (255) T ss_pred HhHhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChh Confidence 3444555678888888888999999999999999999987 678999999999999999753 5789999998 Q ss_pred CCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 95 QLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 95 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) +++++++||+|++..+++|++ ++..+++++.++|||||++++..+ T Consensus 83 ~~~~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255) T PRK14103 83 DWKPKPDTDVVVSNAALQWVP--EHADLLVRWVDELAPGSWIAVQVP 127 (255) T ss_pred hCCCCCCceEEEEehhhhhCC--CHHHHHHHHHHhCCCCcEEEEEcC Confidence 876667999999999999995 558999999999999999998643 No 11 >PLN02233 ubiquinone biosynthesis methyltransferase Probab=99.86 E-value=1.1e-20 Score=159.61 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=120.3 Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHH--cCCCCCeEEEEcccCCCC-CCCC Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVRE--AGLQDHIRFYLCDYRQLP-KANK 101 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~--~g~~~~i~~~~~d~~~~~-~~~~ 101 (272) ++.+.+.++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++... ....++++++++|+.++| ++++ T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~s 145 (261) T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCY 145 (261) T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCC Confidence 45567778999999999999999999876 346999999999999999877542 222357999999999998 6789 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc-ccC---------------- Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY-IFP---------------- 164 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~p---------------- 164 (272) ||+|++..+++|++ ++..+++++.++|||||++++.++..+...+... ...+.... +.| T Consensus 146 fD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~~l~~ 221 (261) T PLN02233 146 FDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTS--MQEWMIDNVVVPVATGYGLAKEYEYLKS 221 (261) T ss_pred EeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHH--HHHHHHhhhhhHHHHHhCChHHHHHHHH Confidence 99999999999994 5689999999999999999999887654321110 00000000 000 Q ss_pred -CCCCCCHHHHHHHhhcCCCcEEEEEEecC Q 024096 165 -GGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272) Q Consensus 165 -~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272) -..+++.+++.+ +++++||++....+++ T Consensus 222 s~~~f~s~~el~~-ll~~aGF~~~~~~~~~ 250 (261) T PLN02233 222 SINEYLTGEELEK-LALEAGFSSAKHYEIS 250 (261) T ss_pred HHHhcCCHHHHHH-HHHHCCCCEEEEEEcC Confidence 023567777764 5557999987776654 No 12 >PLN02396 hexaprenyldihydroxybenzoate methyltransferase Probab=99.86 E-value=1.1e-20 Score=163.01 Aligned_cols=156 Identities=21% Similarity=0.389 Sum_probs=117.3 Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272) .++.+|||||||+|.++..+++. +++|+|+|+++.+++.|+++....+...++.++++|+++++ .+++||+|++.+++ T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322) T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322) T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH Confidence 36779999999999999999874 88999999999999999988766555458999999999887 56799999999999 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCC----CCCCHHHHHHHhhcCCCcEEE Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGG----CLPSLGRVTSAMTSSSGLCVE 187 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~~~l~~~~Gf~v~ 187 (272) +|++ ++..+++++.++|||||.++++++......+........++..++.++. .+.+.+++.+ +++++||++. T Consensus 209 eHv~--d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~-lL~~aGf~i~ 285 (322) T PLN02396 209 EHVA--NPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSM-ILQRASVDVK 285 (322) T ss_pred HhcC--CHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHH-HHHHcCCeEE Confidence 9995 5689999999999999999998765322111000001112222222222 3567788875 4556999998 Q ss_pred EEEec Q 024096 188 HLENI 192 (272) Q Consensus 188 ~~~~~ 192 (272) ++.-+ T Consensus 286 ~~~G~ 290 (322) T PLN02396 286 EMAGF 290 (322) T ss_pred EEeee Confidence 77544 No 13 >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] Probab=99.85 E-value=4.4e-21 Score=154.76 Aligned_cols=152 Identities=24% Similarity=0.434 Sum_probs=115.4 Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272) -+|.+|||+|||.|.++..+|+. |+.|+|+|+++..++.|+......|+ ++.+.+..++++. ..++||+|+|.+++ T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVl 134 (243) T COG2227 58 LPGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVL 134 (243) T ss_pred CCCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHH Confidence 47899999999999999999997 89999999999999999999998886 4788999988888 44899999999999 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCC-----CCCHHHHHHHhhcCCCcEE Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGC-----LPSLGRVTSAMTSSSGLCV 186 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~~~~~~~~~l~~~~Gf~v 186 (272) +|++ ++..+++.|.+++||||.++++++......+....-....+-. +.|.+. +...+++.+.+. ++++.+ T Consensus 135 EHv~--dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~-~~~~~~ 210 (243) T COG2227 135 EHVP--DPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLL-GANLKI 210 (243) T ss_pred HccC--CHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhcc-cCCceE Confidence 9995 5588999999999999999999887443322111111122222 223222 344566665444 477777 Q ss_pred EEEEe Q 024096 187 EHLEN 191 (272) Q Consensus 187 ~~~~~ 191 (272) ....- T Consensus 211 ~~~~g 215 (243) T COG2227 211 IDRKG 215 (243) T ss_pred Eeecc Confidence 65433 No 14 >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Probab=99.85 E-value=6.7e-20 Score=154.65 Aligned_cols=136 Identities=22% Similarity=0.331 Sum_probs=111.9 Q ss_pred ccccccCCCCCCHHHHH-HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC Q 024096 3 YSCAIFKSEHEDLEVGQ-MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG 81 (272) Q Consensus 3 y~~~~~~~~~~~l~~aq-~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g 81 (272) |+-.+|.+....+..+- ...+..+++.+. .++.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|+++....+ T Consensus 13 f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g 90 (255) T PRK11036 13 FSRNIYGTTKGQIRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKG 90 (255) T ss_pred HHHhccCCCccHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC Confidence 44555655554444442 223566777776 55679999999999999999996 7899999999999999999999888 Q ss_pred CCCCeEEEEcccCCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 82 LQDHIRFYLCDYRQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 82 ~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) +.++++++++|+.+++ .+++||+|++..+++|+ .++..+++++.++|||||++++..+. T Consensus 91 ~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~~--~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255) T PRK11036 91 VSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWV--ADPKSVLQTLWSVLRPGGALSLMFYN 151 (255) T ss_pred CccceEEEEcCHHHHhhhcCCCCCEEEehhHHHhh--CCHHHHHHHHHHHcCCCeEEEEEEEC Confidence 8778999999998875 45799999999999999 45689999999999999999986554 No 15 >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional Probab=99.85 E-value=1.5e-19 Score=156.80 Aligned_cols=171 Identities=19% Similarity=0.213 Sum_probs=124.4 Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272) Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272) ...+.+.+...++..++.+|||||||+|.++..++......|+|+|+|+.++..++......+...++.++.+|+++++. T Consensus 107 s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~ 186 (322) T PRK15068 107 SDWKWDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA 186 (322) T ss_pred HHhHHHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC Confidence 33445666777776678999999999999999999874457999999999987665544433334579999999999887 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHh Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAM 178 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l 178 (272) +++||+|++..+++|+ .++..+++++++.|+|||.+++.++...............+.. ......+|+..++...+ T Consensus 187 ~~~FD~V~s~~vl~H~--~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~--~~~~~~lps~~~l~~~L 262 (322) T PRK15068 187 LKAFDTVFSMGVLYHR--RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK--MRNVYFIPSVPALKNWL 262 (322) T ss_pred cCCcCEEEECChhhcc--CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc--CccceeCCCHHHHHHHH Confidence 6789999999999999 5678999999999999999999876544322111100000000 00011357888887554 Q ss_pred hcCCCcEEEEEEecCc Q 024096 179 TSSSGLCVEHLENIGI 194 (272) Q Consensus 179 ~~~~Gf~v~~~~~~~~ 194 (272) +++||.++++.+... T Consensus 263 -~~aGF~~i~~~~~~~ 277 (322) T PRK15068 263 -ERAGFKDVRIVDVSV 277 (322) T ss_pred -HHcCCceEEEEeCCC Confidence 569999998887654 No 16 >TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria. Probab=99.84 E-value=2.8e-19 Score=153.55 Aligned_cols=174 Identities=17% Similarity=0.138 Sum_probs=124.5 Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC Q 024096 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272) Q Consensus 16 ~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272) +-+..-++..++..+...++.+|||+|||+|.++..++......|+|+|+|+.++..++...+..+...++.+..+++.+ T Consensus 103 e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314) T TIGR00452 103 EWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314) T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH Confidence 33445556778888877788999999999999999988873347999999999987654433322223478899999998 Q ss_pred CCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHH Q 024096 96 LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVT 175 (272) Q Consensus 96 ~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 175 (272) ++..++||+|++.++++|+ .++..++++++++|||||.+++.+................+. + ......+|+..++. T Consensus 183 lp~~~~FD~V~s~gvL~H~--~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~-k-~~nv~flpS~~~L~ 258 (314) T TIGR00452 183 LHELYAFDTVFSMGVLYHR--KSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYA-K-MKNVYFIPSVSALK 258 (314) T ss_pred CCCCCCcCEEEEcchhhcc--CCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHH-h-ccccccCCCHHHHH Confidence 8865689999999999999 566899999999999999999987654332211110000010 0 00112357888787 Q ss_pred HHhhcCCCcEEEEEEecCc Q 024096 176 SAMTSSSGLCVEHLENIGI 194 (272) Q Consensus 176 ~~l~~~~Gf~v~~~~~~~~ 194 (272) .. ++++||+.+++.+... T Consensus 259 ~~-L~~aGF~~V~i~~~~~ 276 (314) T TIGR00452 259 NW-LEKVGFENFRILDVLK 276 (314) T ss_pred HH-HHHCCCeEEEEEeccC Confidence 54 4569999988877544 No 17 >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A .... Probab=99.84 E-value=8.6e-20 Score=134.53 Aligned_cols=107 Identities=30% Similarity=0.472 Sum_probs=93.3 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCCCCCCccEEEEec-h Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-RQLPKANKYDRIISCG-M 110 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~~~~~fD~V~~~~-~ 110 (272) |+.+|||+|||+|.++..+++. ++++++|+|+|+.+++.++++....+..++++++++|+ ......++||+|++.. + T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112) T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112) T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc Confidence 5789999999999999999995 89999999999999999999997777778999999999 4444557899999999 5 Q ss_pred hhccCh-hhHHHHHHHHHhcCccCcEEEEEe Q 024096 111 IEHVGH-DYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 111 ~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ++++.+ ++...+++++.+.|+|||++++.+ T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112) T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112) T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE Confidence 554432 567889999999999999999864 No 18 >PRK11207 tellurite resistance protein TehB; Provisional Probab=99.84 E-value=4.6e-19 Score=143.71 Aligned_cols=151 Identities=16% Similarity=0.192 Sum_probs=116.4 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272) ..+++.+...++.+|||+|||+|..+..++++ +.+|+|+|+|+.+++.++++....++. ++++.+.|+.+.+.+++|| T Consensus 20 ~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~fD 97 (197) T PRK11207 20 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTFDGEYD 97 (197) T ss_pred HHHHHhcccCCCCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCcCCCcC Confidence 34566667777889999999999999999996 789999999999999999999888774 6899999998877557899 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272) +|++..+++|+++++...+++++.++|+|||++++.....++.... .. -. ....+.+++.+ ..+ | T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~--~~--------~~--~~~~~~~el~~-~~~--~ 162 (197) T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC--TV--------GF--PFAFKEGELRR-YYE--G 162 (197) T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC--CC--------CC--CCccCHHHHHH-HhC--C Confidence 9999999999887788999999999999999976644433322110 00 00 12345666654 443 8 Q ss_pred cEEEEEEe Q 024096 184 LCVEHLEN 191 (272) Q Consensus 184 f~v~~~~~ 191 (272) |.+.+..+ T Consensus 163 ~~~~~~~~ 170 (197) T PRK11207 163 WEMVKYNE 170 (197) T ss_pred CeEEEeeC Confidence 98876644 No 19 >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. Probab=99.83 E-value=1.1e-19 Score=151.19 Aligned_cols=164 Identities=17% Similarity=0.256 Sum_probs=124.4 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272) ..+++.+.+.++.+|||+|||+|.++..+++. ++.+++|+|+++.+++.++++....++ +++.++++|+.+.+ +++ T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 113 (231) T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN 113 (231) T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC Confidence 55777888889999999999999999999986 457999999999999999999887776 58999999998887 568 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcch--------hhhh----------cc Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPG--------FIKE----------YI 162 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~--------~~~~----------~~ 162 (272) +||+|++..+++|+ ++...+++++.++|+|||++++.+...+.... +..... .... +. T Consensus 114 ~fD~V~~~~~l~~~--~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231) T TIGR02752 114 SFDYVTIGFGLRNV--PDYMQVLREMYRVVKPGGKVVCLETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231) T ss_pred CccEEEEecccccC--CCHHHHHHHHHHHcCcCeEEEEEECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHHHHHH Confidence 99999999999998 45689999999999999999987765443211 100000 0000 00 Q ss_pred c-CCCCCCCHHHHHHHhhcCCCcEEEEEEecC Q 024096 163 F-PGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272) Q Consensus 163 ~-p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272) . ....+++.+++.+ +++++||.+.++..+. T Consensus 190 ~~~~~~~~~~~~l~~-~l~~aGf~~~~~~~~~ 220 (231) T TIGR02752 190 QESTRDFPGMDELAE-MFQEAGFKDVEVKSYT 220 (231) T ss_pred HHHHHHcCCHHHHHH-HHHHcCCCeeEEEEcc Confidence 0 0123567777764 5557999988777654 No 20 >PRK01683 trans-aconitate 2-methyltransferase; Provisional Probab=99.83 E-value=1.7e-18 Score=146.45 Aligned_cols=118 Identities=25% Similarity=0.340 Sum_probs=103.3 Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc Q 024096 15 LEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272) Q Consensus 15 l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272) +...|......+++.+.+.++.+|||+|||+|.++..+++. ++.+|+|+|+|+.+++.++++. .++.++.+|+ T Consensus 12 ~~~~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~ 85 (258) T PRK01683 12 FEDERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADI 85 (258) T ss_pred HHHHhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECch Confidence 44566667788899998889999999999999999999987 6789999999999999998763 3688999999 Q ss_pred CCCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 94 RQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 94 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) .+..++++||+|+++.+++|++ +...+++++.++|||||.+++.. T Consensus 86 ~~~~~~~~fD~v~~~~~l~~~~--d~~~~l~~~~~~LkpgG~~~~~~ 130 (258) T PRK01683 86 ASWQPPQALDLIFANASLQWLP--DHLELFPRLVSLLAPGGVLAVQM 130 (258) T ss_pred hccCCCCCccEEEEccChhhCC--CHHHHHHHHHHhcCCCcEEEEEC Confidence 8776667999999999999995 45899999999999999999863 No 21 >PRK08317 hypothetical protein; Provisional Probab=99.82 E-value=1e-17 Score=139.71 Aligned_cols=115 Identities=26% Similarity=0.376 Sum_probs=99.5 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272) +.+++.+.+.++.+|||+|||+|.++..+++. +.++++|+|+++.+++.++++.. ....++.+..+|+...+ .++ T Consensus 9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~~~~~ 86 (241) T PRK08317 9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLPFPDG 86 (241) T ss_pred HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCCCCCC Confidence 55778888899999999999999999999987 35799999999999999988733 23357999999998877 567 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) .||+|++..+++|+ .++..+++++.++|||||.+++.++. T Consensus 87 ~~D~v~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241) T PRK08317 87 SFDAVRSDRVLQHL--EDPARALAEIARVLRPGGRVVVLDTD 126 (241) T ss_pred CceEEEEechhhcc--CCHHHHHHHHHHHhcCCcEEEEEecC Confidence 89999999999999 45689999999999999999987654 No 22 >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] Probab=99.81 E-value=1.5e-20 Score=152.71 Aligned_cols=152 Identities=22% Similarity=0.403 Sum_probs=113.0 Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCC-----CeEEEEcccCCCCCCCCccEEEEec Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQD-----HIRFYLCDYRQLPKANKYDRIISCG 109 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-----~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272) |++|||+|||.|.++..|++. ++.|+|+|+++.+++.|++........+ ++++.+.|++... +.||+|+|.+ T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcse 166 (282) T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSE 166 (282) T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHH Confidence 488999999999999999996 9999999999999999999955443322 3667777777765 5699999999 Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCC----CCCHHHHHHHhhcCCCcE Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGC----LPSLGRVTSAMTSSSGLC 185 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~~l~~~~Gf~ 185 (272) +++|+ +++..+++.+.+.|||||.+++++....-..+..-.-....+.+.+..|.+ +++..++.+.+. +.++. T Consensus 167 vleHV--~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~-~~~~~ 243 (282) T KOG1270|consen 167 VLEHV--KDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILN-ANGAQ 243 (282) T ss_pred HHHHH--hCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHH-hcCcc Confidence 99999 788999999999999999999987764432221111122333343333433 466777765444 57888 Q ss_pred EEEEEec Q 024096 186 VEHLENI 192 (272) Q Consensus 186 v~~~~~~ 192 (272) +..+... T Consensus 244 v~~v~G~ 250 (282) T KOG1270|consen 244 VNDVVGE 250 (282) T ss_pred hhhhhcc Confidence 7765443 No 23 >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] Probab=99.80 E-value=7e-19 Score=142.11 Aligned_cols=127 Identities=20% Similarity=0.280 Sum_probs=108.3 Q ss_pred HHHHHHHH-HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC------CEEEEEcCCHHHHHHHHHHHHHcCCCCC-- Q 024096 16 EVGQMRKV-SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG------CKYTGITLSEEQLKYAEIKVREAGLQDH-- 85 (272) Q Consensus 16 ~~aq~~~~-~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~------~~v~gvd~s~~~~~~a~~~~~~~g~~~~-- 85 (272) ...+++.+ +..+.++...++++|||++||+|.++..+.++ .. .+|+++|+||.|+..++++..+.++.++ T Consensus 81 SlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~ 160 (296) T KOG1540|consen 81 SLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSR 160 (296) T ss_pred hcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCc Confidence 33344444 34567788888999999999999999999887 33 7999999999999999999988887655 Q ss_pred eEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC Q 024096 86 IRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 86 i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272) +.++++|++++| ++++||...+.+.+.+++ ++...+++++|+|||||++.+-++.-- T Consensus 161 ~~w~~~dAE~LpFdd~s~D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv 218 (296) T KOG1540|consen 161 VEWVEGDAEDLPFDDDSFDAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKV 218 (296) T ss_pred eEEEeCCcccCCCCCCcceeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEcccc Confidence 899999999999 889999999999999995 458999999999999999998766643 No 24 >TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB Probab=99.79 E-value=2.4e-18 Score=139.34 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=113.8 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272) ..+++.+...++.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++....++ ++.+...|+...+.+++|| T Consensus 20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~fD 96 (195) T TIGR00477 20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNEDYD 96 (195) T ss_pred HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCCCC Confidence 35556666666789999999999999999986 78999999999999999999888776 3788888887655456899 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCC Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSG 183 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~G 183 (272) +|++..+++|++.++...+++++.++|||||++++.++...... .. -.|.....+.+++.+ +. .+ T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~-~~-----------~~~~~~~~~~~el~~-~f--~~ 161 (195) T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADY-PC-----------HMPFSFTFKEDELRQ-YY--AD 161 (195) T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCC-CC-----------CCCcCccCCHHHHHH-Hh--CC Confidence 99999999999877788999999999999999776544322110 00 001123456777764 44 35 Q ss_pred cEEEEEEe Q 024096 184 LCVEHLEN 191 (272) Q Consensus 184 f~v~~~~~ 191 (272) |.+..... T Consensus 162 ~~~~~~~e 169 (195) T TIGR00477 162 WELLKYNE 169 (195) T ss_pred CeEEEeec Confidence 88877664 No 25 >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. Probab=99.79 E-value=7.8e-18 Score=145.79 Aligned_cols=159 Identities=16% Similarity=0.282 Sum_probs=121.2 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272) .+.+++.+++.++.+|||||||+|.++..++++ ++.+++++|. +.+++.+++++...++.++++++.+|+.+.+. .. T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~-~~ 215 (306) T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY-PE 215 (306) T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC-CC Confidence 355677778888899999999999999999998 7889999997 88999999999999988899999999876543 23 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCC------CCCCHHHHH Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGG------CLPSLGRVT 175 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~~~ 175 (272) +|+|++..++|+++++....+++++++.|+|||++++.++..++...... ..+..+..+.+ ...+.+++. T Consensus 216 ~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~e~~ 291 (306) T TIGR02716 216 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNF----DYLSHYILGAGMPFSVLGFKEQARYK 291 (306) T ss_pred CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchh----hHHHHHHHHcccccccccCCCHHHHH Confidence 79999999999998776788999999999999999999886554322111 11112111111 123356665 Q ss_pred HHhhcCCCcEEEE Q 024096 176 SAMTSSSGLCVEH 188 (272) Q Consensus 176 ~~l~~~~Gf~v~~ 188 (272) .+++++||+.+. T Consensus 292 -~ll~~aGf~~v~ 303 (306) T TIGR02716 292 -EILESLGYKDVT 303 (306) T ss_pred -HHHHHcCCCeeE Confidence 456679997654 No 26 >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Probab=99.79 E-value=4.9e-18 Score=142.53 Aligned_cols=111 Identities=16% Similarity=0.238 Sum_probs=98.6 Q ss_pred CCCCCEEEEECCCchHHHHHHHH--c-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVK--Q-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~--~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272) +.++.+|||+|||+|..+..+++ . ++++++|+|+|+.+++.|++++...+...+++++++|+.+.+. ..+|+|++. T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D~vv~~ 132 (247) T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLN 132 (247) T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCCEEehh Confidence 35778999999999999988887 2 6789999999999999999999888777789999999988774 359999999 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) .+++|+++++...+++++++.|||||.+++.+... T Consensus 133 ~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247) T PRK15451 133 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247) T ss_pred hHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC Confidence 99999987777899999999999999999987553 No 27 >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A .... Probab=99.79 E-value=2.5e-18 Score=133.80 Aligned_cols=107 Identities=35% Similarity=0.620 Sum_probs=95.7 Q ss_pred CCCCEEEEECCCchHHHHHHHH-c-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC--CCCccEEEEe Q 024096 33 SKGQEVLDIGCGWGTLAIEIVK-Q-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK--ANKYDRIISC 108 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~-~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~--~~~fD~V~~~ 108 (272) +++.+|||+|||+|.++..+++ . ++.+++|+|+|+.+++.|+++++..+++ ++++.++|+.+++. .+.||+|++. T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~ 80 (152) T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN 80 (152) T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc Confidence 4678999999999999999994 3 6789999999999999999999999986 89999999999763 3799999999 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) .+++|+ .+...+++++.+.|+++|.+++.++. T Consensus 81 ~~l~~~--~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152) T PF13847_consen 81 GVLHHF--PDPEKVLKNIIRLLKPGGILIISDPN 112 (152) T ss_dssp STGGGT--SHHHHHHHHHHHHEEEEEEEEEEEEE T ss_pred Cchhhc--cCHHHHHHHHHHHcCCCcEEEEEECC Confidence 999999 45689999999999999999997766 No 28 >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... Probab=99.79 E-value=1.1e-18 Score=124.32 Aligned_cols=94 Identities=33% Similarity=0.538 Sum_probs=82.9 Q ss_pred EEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChh Q 024096 39 LDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHD 117 (272) Q Consensus 39 LDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~ 117 (272) ||+|||+|..+..+++.++.+++++|+++.+++.++++.... ++.+.++|+.+++ ++++||+|++..+++|+ + T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~ 74 (95) T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E 74 (95) T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c Confidence 899999999999999986789999999999999999986543 5679999999999 78999999999999999 6 Q ss_pred hHHHHHHHHHhcCccCcEEEE Q 024096 118 YMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 118 ~~~~~l~~~~~~LkpgG~l~i 138 (272) ++..+++++.|+|||||++++ T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95) T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95) T ss_dssp HHHHHHHHHHHHEEEEEEEEE T ss_pred CHHHHHHHHHHHcCcCeEEeC Confidence 789999999999999999986 No 29 >TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. Probab=99.79 E-value=7.1e-18 Score=141.00 Aligned_cols=112 Identities=15% Similarity=0.176 Sum_probs=98.6 Q ss_pred CCCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG 109 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272) .++.+|||+|||+|..+..+++. ++++++|+|+|+.+++.|++++...+...+++++++|+.+++. ..+|+|++.. T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~d~v~~~~ 130 (239) T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF 130 (239) T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-CCCCEEeeec Confidence 57789999999999999999875 5789999999999999999998876655689999999998874 3589999999 Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) +++|+++++...++++++++|+|||.+++.+..... T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~ 166 (239) T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFE 166 (239) T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCC Confidence 999998777889999999999999999998765433 No 30 >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. Probab=99.79 E-value=7.7e-18 Score=138.97 Aligned_cols=167 Identities=19% Similarity=0.293 Sum_probs=122.7 Q ss_pred HHHHHHHHHcC--CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC Q 024096 21 RKVSVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272) Q Consensus 21 ~~~~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272) ...+.+++.+. ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.|++++...+..+++.+.++|+.+.+ T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 117 (219) T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC- 117 (219) T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC- Confidence 33455666665 567899999999999999999986 77999999999999999999987776568999999998876 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcc-----cCCCCCCCHHH Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYI-----FPGGCLPSLGR 173 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~~~~~~~ 173 (272) ++||+|++..+++|++.++...+++++.+++++++.+.+.. ...... ....+...+ .+....++.++ T Consensus 118 -~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219) T TIGR02021 118 -GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP---KTAWLA----FLKMIGELFPGSSRATSAYLHPMTD 189 (219) T ss_pred -CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC---CchHHH----HHHHHHhhCcCcccccceEEecHHH Confidence 78999999999999987778889999999988776555421 111100 011111111 11123356677 Q ss_pred HHHHhhcCCCcEEEEEEecCccHHH Q 024096 174 VTSAMTSSSGLCVEHLENIGIHYYQ 198 (272) Q Consensus 174 ~~~~l~~~~Gf~v~~~~~~~~~~~~ 198 (272) +. .+++++||.+.........+.. T Consensus 190 ~~-~~l~~~Gf~v~~~~~~~~~~~~ 213 (219) T TIGR02021 190 LE-RALGELGWKIVREGLVSTGFYN 213 (219) T ss_pred HH-HHHHHcCceeeeeecccccchh Confidence 76 4556799999988877665544 No 31 >PLN02490 MPBQ/MSBQ methyltransferase Probab=99.78 E-value=6.2e-18 Score=146.42 Aligned_cols=155 Identities=23% Similarity=0.202 Sum_probs=116.7 Q ss_pred HHHHHHcCC-CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC Q 024096 24 SVLIEKARV-SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272) Q Consensus 24 ~~l~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272) +.+++.+.+ .++.+|||+|||+|.++..+++. ++.+++++|+|+.+++.++++... .+++++.+|+.+++ +++ T Consensus 102 ~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~ 177 (340) T PLN02490 102 DDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTD 177 (340) T ss_pred HHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCC Confidence 445565554 46789999999999999998887 567999999999999999987542 36889999999888 667 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhc Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 180 (272) +||+|++..+++|+++ ....++++.++|||||++++.....+..... ..... .....++.+++.+ +++ T Consensus 178 sFDvVIs~~~L~~~~d--~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~------r~~~~---~~~~~~t~eEl~~-lL~ 245 (340) T PLN02490 178 YADRYVSAGSIEYWPD--PQRGIKEAYRVLKIGGKACLIGPVHPTFWLS------RFFAD---VWMLFPKEEEYIE-WFT 245 (340) T ss_pred ceeEEEEcChhhhCCC--HHHHHHHHHHhcCCCcEEEEEEecCcchhHH------HHhhh---hhccCCCHHHHHH-HHH Confidence 8999999999999954 4789999999999999998865443321100 00000 0112457777875 455 Q ss_pred CCCcEEEEEEecCc Q 024096 181 SSGLCVEHLENIGI 194 (272) Q Consensus 181 ~~Gf~v~~~~~~~~ 194 (272) ++||+.+++++++. T Consensus 246 ~aGF~~V~i~~i~~ 259 (340) T PLN02490 246 KAGFKDVKLKRIGP 259 (340) T ss_pred HCCCeEEEEEEcCh Confidence 69999998887654 No 32 >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed Probab=99.78 E-value=1e-17 Score=142.74 Aligned_cols=155 Identities=23% Similarity=0.250 Sum_probs=116.4 Q ss_pred cCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEE Q 024096 30 ARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRII 106 (272) Q Consensus 30 l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~ 106 (272) ..+.++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++....++. ++.++.+|+++++ ++++||+|+ T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~~~~~fD~Vi 151 (272) T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPVADNSVDVII 151 (272) T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCCCCCceeEEE Confidence 45678999999999999988877765 3458999999999999999999888874 8999999999888 567999999 Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEE Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCV 186 (272) Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v 186 (272) ++.+++|.+ +...+++++.++|||||++++.++............ ....+....+...+..++.+ +++++||.. T Consensus 152 ~~~v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~e~~~-~l~~aGf~~ 225 (272) T PRK11873 152 SNCVINLSP--DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRN---DAELYAGCVAGALQEEEYLA-MLAEAGFVD 225 (272) T ss_pred EcCcccCCC--CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHH---hHHHHhccccCCCCHHHHHH-HHHHCCCCc Confidence 999999885 447899999999999999999887654432211111 11111111122346667764 455699988 Q ss_pred EEEEe Q 024096 187 EHLEN 191 (272) Q Consensus 187 ~~~~~ 191 (272) ..+.. T Consensus 226 v~i~~ 230 (272) T PRK11873 226 ITIQP 230 (272) T ss_pred eEEEe Confidence 76654 No 33 >PRK10258 biotin biosynthesis protein BioC; Provisional Probab=99.77 E-value=2e-17 Score=139.37 Aligned_cols=168 Identities=17% Similarity=0.158 Sum_probs=122.0 Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC Q 024096 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272) Q Consensus 16 ~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272) ...|....+.+++.+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ...++++|++. T Consensus 24 ~~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~ 96 (251) T PRK10258 24 AELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIES 96 (251) T ss_pred HHHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCccc Confidence 4567777788888888767789999999999999998875 7899999999999999987632 35788999998 Q ss_pred CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHH Q 024096 96 LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRV 174 (272) Q Consensus 96 ~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 174 (272) ++ ++++||+|+++.+++++ .++..+++++.++|+|||.++++.+..... .+.......+.. ......+++.+++ T Consensus 97 ~~~~~~~fD~V~s~~~l~~~--~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~--~el~~~~~~~~~-~~~~~~~~~~~~l 171 (251) T PRK10258 97 LPLATATFDLAWSNLAVQWC--GNLSTALRELYRVVRPGGVVAFTTLVQGSL--PELHQAWQAVDE-RPHANRFLPPDAI 171 (251) T ss_pred CcCCCCcEEEEEECchhhhc--CCHHHHHHHHHHHcCCCeEEEEEeCCCCch--HHHHHHHHHhcc-CCccccCCCHHHH Confidence 88 66789999999999998 466899999999999999999976653221 111110000000 1112345677777 Q ss_pred HHHhhcCCCcEEEEEEecCccHH Q 024096 175 TSAMTSSSGLCVEHLENIGIHYY 197 (272) Q Consensus 175 ~~~l~~~~Gf~v~~~~~~~~~~~ 197 (272) ...+ ...++.. ..+.+...|. T Consensus 172 ~~~l-~~~~~~~-~~~~~~~~f~ 192 (251) T PRK10258 172 EQAL-NGWRYQH-HIQPITLWFD 192 (251) T ss_pred HHHH-HhCCcee-eeeEEEEECC Confidence 7554 4577754 3444444443 No 34 >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C .... Probab=99.77 E-value=2e-18 Score=135.22 Aligned_cols=140 Identities=24% Similarity=0.369 Sum_probs=99.6 Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEech Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGM 110 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~ 110 (272) ..++.+|||+|||.|.++..+++. +.+++|+|+++.+++. .++.....+....+ ++++||+|++..+ T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161) T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161) T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESS T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHH Confidence 578899999999999999999776 6799999999999888 13344444333333 5689999999999 Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEE Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEH 188 (272) Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~ 188 (272) ++|++ ++..+++++.++|||||+++++++............. .....+ .....+.+.+++. .+++++||++++ T Consensus 88 l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~-~ll~~~G~~iv~ 160 (161) T PF13489_consen 88 LEHLP--DPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKW-RYDRPY-GGHVHFFSPDELR-QLLEQAGFEIVE 160 (161) T ss_dssp GGGSS--HHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHC-CGTCHH-TTTTEEBBHHHHH-HHHHHTTEEEEE T ss_pred Hhhcc--cHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhc-CCcCcc-CceeccCCHHHHH-HHHHHCCCEEEE Confidence 99995 6799999999999999999998877532110000000 000000 0123445777776 566679999875 No 35 >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed Probab=99.76 E-value=6e-17 Score=129.59 Aligned_cols=101 Identities=21% Similarity=0.330 Sum_probs=89.2 Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM 110 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~ 110 (272) ++++.+|||+|||+|..+..+++. ++++|+++|+++.+++.++++++.++++ +++++++|+.+++..++||+|++.. T Consensus 43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~- 120 (187) T PRK00107 43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRA- 120 (187) T ss_pred cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEcc- Confidence 445899999999999999999876 7889999999999999999999999985 5999999998877666899999964 Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) + .++..+++.+.+.|||||++++. T Consensus 121 ---~--~~~~~~l~~~~~~LkpGG~lv~~ 144 (187) T PRK00107 121 ---V--ASLSDLVELCLPLLKPGGRFLAL 144 (187) T ss_pred ---c--cCHHHHHHHHHHhcCCCeEEEEE Confidence 2 34578999999999999999985 No 36 >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Probab=99.76 E-value=3.9e-17 Score=136.27 Aligned_cols=166 Identities=23% Similarity=0.326 Sum_probs=123.3 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KAN 100 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~ 100 (272) ..++..+...++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++...++..++.++.+|+.+.+ ..+ T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239) T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239) T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC Confidence 455666666778999999999999999999873 48999999999999999999877666668999999998877 457 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc-------ccCC-------- Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY-------IFPG-------- 165 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-------~~p~-------- 165 (272) .||+|++..+++++ .+...+++++.++|+|||.+++.+...+.... ......+.... .+.+ T Consensus 121 ~~D~I~~~~~l~~~--~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239) T PRK00216 121 SFDAVTIAFGLRNV--PDIDKALREMYRVLKPGGRLVILEFSKPTNPP--LKKAYDFYLFKVLPLIGKLISKNAEAYSYL 196 (239) T ss_pred CccEEEEecccccC--CCHHHHHHHHHHhccCCcEEEEEEecCCCchH--HHHHHHHHHHhhhHHHHHHHcCCcHHHHHH Confidence 89999999999998 45689999999999999999988776544321 10000000000 0000 Q ss_pred ----CCCCCHHHHHHHhhcCCCcEEEEEEecCc Q 024096 166 ----GCLPSLGRVTSAMTSSSGLCVEHLENIGI 194 (272) Q Consensus 166 ----~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~ 194 (272) ..+++.+++.+ +++++||.+..+..+.. T Consensus 197 ~~~~~~~~~~~~~~~-~l~~aGf~~~~~~~~~~ 228 (239) T PRK00216 197 AESIRAFPDQEELAA-MLEEAGFERVRYRNLTG 228 (239) T ss_pred HHHHHhCCCHHHHHH-HHHhCCCceeeeeeeec Confidence 12356666664 55579999888877543 No 37 >PRK12335 tellurite resistance protein TehB; Provisional Probab=99.75 E-value=1e-16 Score=137.46 Aligned_cols=148 Identities=16% Similarity=0.230 Sum_probs=112.4 Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272) Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272) ++..+...++.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...++ ++++...|+...+.+++||+| T Consensus 112 ~~~~~~~~~~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I 188 (287) T PRK12335 112 VLEAVQTVKPGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFI 188 (287) T ss_pred HHHHhhccCCCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEE Confidence 334444344569999999999999999986 78999999999999999999988876 688899998776556889999 Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcE Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLC 185 (272) Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~ 185 (272) ++..+++|++.++...+++++.++|+|||++++........... -.|.....+.+++.+ .. .+|+ T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~------------~~p~~~~~~~~el~~-~~--~~~~ 253 (287) T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPC------------PMPFSFTFKEGELKD-YY--QDWE 253 (287) T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCC------------CCCCCcccCHHHHHH-Hh--CCCE Confidence 99999999987788999999999999999977644332221100 012223456666664 34 3588 Q ss_pred EEEEEe Q 024096 186 VEHLEN 191 (272) Q Consensus 186 v~~~~~ 191 (272) +..... T Consensus 254 i~~~~e 259 (287) T PRK12335 254 IVKYNE 259 (287) T ss_pred EEEEec Confidence 887643 No 38 >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. Probab=99.75 E-value=5.9e-17 Score=128.96 Aligned_cols=117 Identities=22% Similarity=0.325 Sum_probs=98.3 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272) ..+++.++..++.++||+|||.|..+.+||++ |..|+++|.|+..++.+++.+...+++ ++..+.|+.+...++.|| T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD 96 (192) T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYD 96 (192) T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEE T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcC Confidence 45666777667789999999999999999997 999999999999999999998888874 999999998887668899 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) +|++..+++|+..+..+.+++++...++|||++++..... T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~ 136 (192) T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME 136 (192) T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB- T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc Confidence 9999999999998888999999999999999999866653 No 39 >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated Probab=99.74 E-value=1.2e-16 Score=132.82 Aligned_cols=166 Identities=19% Similarity=0.261 Sum_probs=112.5 Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272) ..++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.++++....+..+++.+..+|+.. .+++||+|++..++ T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l 137 (230) T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVL 137 (230) T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchh Confidence 467789999999999999999986 678999999999999999998887765689999999543 34789999999999 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc-ccCCCCCCCHHHHHHHhhcCCCcEEEEEE Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY-IFPGGCLPSLGRVTSAMTSSSGLCVEHLE 190 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~ 190 (272) +|++++....+++++.+.+++++.+.+. .. .............+... ..+.....+..++.. +++++||.+.... T Consensus 138 ~~~~~~~~~~~l~~l~~~~~~~~~i~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~Gf~~~~~~ 213 (230) T PRK07580 138 IHYPQEDAARMLAHLASLTRGSLIFTFA--PY-TPLLALLHWIGGLFPGPSRTTRIYPHREKGIRR-ALAAAGFKVVRTE 213 (230) T ss_pred hcCCHHHHHHHHHHHHhhcCCeEEEEEC--Cc-cHHHHHHHHhccccCCccCCCCccccCHHHHHH-HHHHCCCceEeee Confidence 9998888889999999877544433321 11 00000000000011000 011123345666664 5557999998887 Q ss_pred ecCc-cHHHHHHHHH Q 024096 191 NIGI-HYYQTLRCWR 204 (272) Q Consensus 191 ~~~~-~~~~~~~~~~ 204 (272) .... .|...+..|. T Consensus 214 ~~~~~~~~~~~~~~~ 228 (230) T PRK07580 214 RISSGFYFSRLLEAV 228 (230) T ss_pred eccchhHHHHHHHHh Confidence 7553 3444444443 No 40 >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification Probab=99.74 E-value=1.8e-16 Score=132.64 Aligned_cols=165 Identities=18% Similarity=0.186 Sum_probs=118.7 Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272) Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272) +++.+...+..-.|.+|||||||.|..+..++.+....|+|+|+++......+....-.|....+......+++++..+. T Consensus 103 KW~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~ 182 (315) T PF08003_consen 103 KWDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGA 182 (315) T ss_pred hHHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCC Confidence 44566666655578999999999999999999984457999999988766654444444443344555456778776689 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC--cchhhhhcccCCCCCCCHHHHHHHhh Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL--SPGFIKEYIFPGGCLPSLGRVTSAMT 179 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~l~ 179 (272) ||+|+|.+++.|. .++-..++++++.|+|||.+++.+...+.+....+.. ...-++.- -.+|+...+...+ T Consensus 183 FDtVF~MGVLYHr--r~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv----~FiPs~~~L~~wl- 255 (315) T PF08003_consen 183 FDTVFSMGVLYHR--RSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNV----WFIPSVAALKNWL- 255 (315) T ss_pred cCEEEEeeehhcc--CCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCce----EEeCCHHHHHHHH- Confidence 9999999999999 6779999999999999999999888765543222211 11112221 1368888887544 Q ss_pred cCCCcEEEEEEecC Q 024096 180 SSSGLCVEHLENIG 193 (272) Q Consensus 180 ~~~Gf~v~~~~~~~ 193 (272) +.+||.-+++-+.. T Consensus 256 ~r~gF~~v~~v~~~ 269 (315) T PF08003_consen 256 ERAGFKDVRCVDVS 269 (315) T ss_pred HHcCCceEEEecCc Confidence 46999877776654 No 41 >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] Probab=99.73 E-value=6.9e-17 Score=127.58 Aligned_cols=165 Identities=19% Similarity=0.246 Sum_probs=125.0 Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272) Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272) ...+-...++.++++.+..+|.|+|||+|+.+..|+++ +++.++|+|.|+.|++.|+++. .+++|..+|+.+. T Consensus 14 eRtRPa~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w 87 (257) T COG4106 14 ERTRPARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTW 87 (257) T ss_pred hccCcHHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhc Confidence 33444567889999999999999999999999999999 9999999999999999998763 4789999999999 Q ss_pred CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccc----cCcchhhhhcc---cCCCCCC Q 024096 97 PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY----RLSPGFIKEYI---FPGGCLP 169 (272) Q Consensus 97 ~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~----~~~~~~~~~~~---~p~~~~~ 169 (272) .++...|+++++.+++++++. ..++.++...|.|||.+.++-+..-+...... .+...|-...- .....++ T Consensus 88 ~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~ 165 (257) T COG4106 88 KPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLP 165 (257) T ss_pred CCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCC Confidence 988999999999999999765 89999999999999999996544322211111 11111211111 1235678 Q ss_pred CHHHHHHHhhcCCCcEEEEEEe Q 024096 170 SLGRVTSAMTSSSGLCVEHLEN 191 (272) Q Consensus 170 ~~~~~~~~l~~~~Gf~v~~~~~ 191 (272) +...+.+.+.. .+-+|.-++. T Consensus 166 s~a~Yy~lLa~-~~~rvDiW~T 186 (257) T COG4106 166 SPAAYYELLAP-LACRVDIWHT 186 (257) T ss_pred CHHHHHHHhCc-ccceeeeeee Confidence 88888866553 4556544443 No 42 >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. Probab=99.73 E-value=1.8e-16 Score=118.63 Aligned_cols=114 Identities=23% Similarity=0.288 Sum_probs=95.8 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-- Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272) .....+++.+.+.++.+|||+|||+|..+..+++. ++.+++++|+++.+++.+++++...+.+ +++++.+|+.... T Consensus 6 ~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (124) T TIGR02469 6 EVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALED 84 (124) T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChh Confidence 33456778888888899999999999999999988 6689999999999999999999888764 6899999977533 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ..++||.|++.....+ ...+++++.+.|+|||++++.. T Consensus 85 ~~~~~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~li~~~ 122 (124) T TIGR02469 85 SLPEPDRVFIGGSGGL-----LQEILEAIWRRLRPGGRIVLNA 122 (124) T ss_pred hcCCCCEEEECCcchh-----HHHHHHHHHHHcCCCCEEEEEe Confidence 3468999999765443 3689999999999999999853 No 43 >TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. Probab=99.73 E-value=2.3e-16 Score=125.92 Aligned_cols=99 Identities=19% Similarity=0.304 Sum_probs=86.2 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272) ++.+|||+|||+|.++..++.. ++.+|+++|+|+.+++.+++++++.++. +++++++|+.+++..++||+|++.. ++ T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~~ 119 (181) T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-LA 119 (181) T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-hh Confidence 4789999999999999998876 5679999999999999999999988874 6999999999876567999999865 43 Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) + ...+++.+.++|+|||++++. T Consensus 120 ~-----~~~~~~~~~~~LkpgG~lvi~ 141 (181) T TIGR00138 120 S-----LNVLLELTLNLLKVGGYFLAY 141 (181) T ss_pred C-----HHHHHHHHHHhcCCCCEEEEE Confidence 3 367888999999999999974 No 44 >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. Probab=99.72 E-value=3.6e-16 Score=129.03 Aligned_cols=119 Identities=32% Similarity=0.415 Sum_probs=100.3 Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K 98 (272) Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~ 98 (272) ....+++.+...++.+|||+|||+|..+..+++. +. .+++++|+++.+++.++++.. ...++++..+|+.+.+ + T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~ 103 (223) T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFE 103 (223) T ss_pred HHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCC Confidence 3455666776678899999999999999999987 33 699999999999999998865 2357899999998887 5 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) +++||+|++..+++|+ .++..+++++.+.|+|||++++.+...+. T Consensus 104 ~~~~D~i~~~~~~~~~--~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223) T TIGR01934 104 DNSFDAVTIAFGLRNV--TDIQKALREMYRVLKPGGRLVILEFSKPA 148 (223) T ss_pred CCcEEEEEEeeeeCCc--ccHHHHHHHHHHHcCCCcEEEEEEecCCC Confidence 5789999999999998 45689999999999999999997776443 No 45 >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. Probab=99.72 E-value=1.5e-15 Score=124.14 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=110.6 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-----------CCCCCeEEEEcc Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA-----------GLQDHIRFYLCD 92 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-----------g~~~~i~~~~~d 92 (272) ...++.+...++.+|||+|||.|..+.+||++ |.+|+|+|+|+..++.+....... .-..+++++++| T Consensus 24 ~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D 102 (213) T TIGR03840 24 VKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGD 102 (213) T ss_pred HHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEcc Confidence 33445554457789999999999999999997 999999999999999864321100 001368999999 Q ss_pred cCCCCC--CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCC Q 024096 93 YRQLPK--ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPS 170 (272) Q Consensus 93 ~~~~~~--~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (272) +.+++. .+.||.|+-..+++|++.+....+++.+.++|||||++++..+..+..... -| -+..+ T Consensus 103 ~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-------------gp-p~~~~ 168 (213) T TIGR03840 103 FFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-------------GP-PFSVS 168 (213) T ss_pred CCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-------------Cc-CCCCC Confidence 998873 467999999999999998888999999999999999988766654321100 01 12346 Q ss_pred HHHHHHHhhcCCCcEEEEEEec Q 024096 171 LGRVTSAMTSSSGLCVEHLENI 192 (272) Q Consensus 171 ~~~~~~~l~~~~Gf~v~~~~~~ 192 (272) .+++.+ +.. .+|.+..++.. T Consensus 169 ~~eL~~-~f~-~~~~i~~~~~~ 188 (213) T TIGR03840 169 PAEVEA-LYG-GHYEIELLESR 188 (213) T ss_pred HHHHHH-Hhc-CCceEEEEeec Confidence 666664 443 46777766653 No 46 >KOG4300 consensus Predicted methyltransferase [General function prediction only] Probab=99.71 E-value=5e-17 Score=127.42 Aligned_cols=112 Identities=20% Similarity=0.195 Sum_probs=96.4 Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEcccCCCC--CCCCccEE Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIR-FYLCDYRQLP--KANKYDRI 105 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~-~~~~d~~~~~--~~~~fD~V 105 (272) .+.......|||+|||+|..-.+.-..++++||++|+++.|.+.+.+.++++.. .++. |++++.++++ ++.++|+| T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtV 149 (252) T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTV 149 (252) T ss_pred HhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeE Confidence 333333456899999999988877766889999999999999999999988744 4666 9999999999 88999999 Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) ++..++... +++.+.++++.++|||||++++.+-+. T Consensus 150 V~TlvLCSv--e~~~k~L~e~~rlLRpgG~iifiEHva 185 (252) T KOG4300|consen 150 VCTLVLCSV--EDPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252) T ss_pred EEEEEEecc--CCHHHHHHHHHHhcCCCcEEEEEeccc Confidence 999999988 778999999999999999999976653 No 47 >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Probab=99.71 E-value=3.5e-16 Score=130.31 Aligned_cols=184 Identities=23% Similarity=0.396 Sum_probs=129.3 Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc Q 024096 14 DLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272) Q Consensus 14 ~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272) .+.++....+..+...+...++.+|||+|||+|.++..+++. +++++++|+++.+++.++++....+. .+.+...|+ T Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~ 104 (233) T PRK05134 28 PLHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTA 104 (233) T ss_pred HHHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCH Confidence 344444455666777766668899999999999999999886 78999999999999999998876654 578888888 Q ss_pred CCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcc----cCCCC Q 024096 94 RQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYI----FPGGC 167 (272) Q Consensus 94 ~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~ 167 (272) .+.+ .+++||+|++..+++|++ +...+++++.++|+|||.+++..+......+.........+.... ..... T Consensus 105 ~~~~~~~~~~fD~Ii~~~~l~~~~--~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (233) T PRK05134 105 EELAAEHPGQFDVVTCMEMLEHVP--DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKK 182 (233) T ss_pred HHhhhhcCCCccEEEEhhHhhccC--CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhh Confidence 8775 457999999999999995 457899999999999999998755321110000000000011100 11133 Q ss_pred CCCHHHHHHHhhcCCCcEEEEEEecCccHHHHHHHHHH Q 024096 168 LPSLGRVTSAMTSSSGLCVEHLENIGIHYYQTLRCWRK 205 (272) Q Consensus 168 ~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~~~~~~~~~~ 205 (272) +.+..++.. +++.+||.++... +.+|.+....|.. T Consensus 183 ~~~~~~~~~-~l~~~Gf~~v~~~--~~~~~~~~~~~~~ 217 (233) T PRK05134 183 FIKPSELAA-WLRQAGLEVQDIT--GLHYNPLTNRWKL 217 (233) T ss_pred cCCHHHHHH-HHHHCCCeEeeee--eEEechhhcceee Confidence 556777764 4556999998765 3456566677765 No 48 >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... Probab=99.71 E-value=6.2e-16 Score=122.48 Aligned_cols=129 Identities=25% Similarity=0.438 Sum_probs=102.5 Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC Q 024096 4 SCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGL 82 (272) Q Consensus 4 ~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~ 82 (272) ..++|.. ..++.+..-.++.+... ++.+|||+|||+|.++..+++. +..+|+++|+++.+++.+++++..+++ T Consensus 7 ~~gvFs~--~~~d~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~ 80 (170) T PF05175_consen 7 HPGVFSP--PRLDAGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL 80 (170) T ss_dssp ETTSTTT--TSHHHHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC T ss_pred CCCeeCC--CCCCHHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc Confidence 3567742 24566666555555555 6779999999999999999998 666899999999999999999999998 Q ss_pred CCCeEEEEcccCCCCCCCCccEEEEechhhccCh---hhHHHHHHHHHhcCccCcEEEEE Q 024096 83 QDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGH---DYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 83 ~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+ ++++..|..+..++++||+|+++..++.-.+ .....+++++.+.|+|||.+++. T Consensus 81 ~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170) T PF05175_consen 81 EN-VEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170) T ss_dssp TT-EEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEE T ss_pred cc-cccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEE Confidence 65 9999999877656789999999988665432 24578999999999999999873 No 49 >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A. Probab=99.71 E-value=4.1e-17 Score=118.05 Aligned_cols=95 Identities=28% Similarity=0.585 Sum_probs=82.4 Q ss_pred EEEECCCchHHHHHHHHcc----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec-hh Q 024096 38 VLDIGCGWGTLAIEIVKQT----GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG-MI 111 (272) Q Consensus 38 vLDiG~G~G~~~~~l~~~~----~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~-~~ 111 (272) |||+|||+|..+..+++.. ..+++|+|+|+.+++.++++....+. +++++++|+.+++ ..++||+|++.. ++ T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101) T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101) T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc Confidence 7999999999999999863 37999999999999999999887665 7899999999988 667999999954 59 Q ss_pred hccChhhHHHHHHHHHhcCccCc Q 024096 112 EHVGHDYMEEFFGCCESLLATHG 134 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG 134 (272) +|+++++...+++++.++||||| T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101) T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101) T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE T ss_pred CCCCHHHHHHHHHHHHHHhCCCC Confidence 99999999999999999999998 No 50 >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated Probab=99.71 E-value=8.9e-16 Score=123.57 Aligned_cols=111 Identities=22% Similarity=0.305 Sum_probs=92.9 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272) ..+++.+.+.++.+|||+|||+|.++..+++. ++.+++++|+++.+++.+++++...++. +++++++|... +..++| T Consensus 21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~-~~~~~~ 98 (187) T PRK08287 21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI-ELPGKA 98 (187) T ss_pred HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh-hcCcCC Confidence 34567778888999999999999999999987 6689999999999999999999888774 79999998743 234689 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) |+|++.....++ ..+++++.+.|+|||++++... T Consensus 99 D~v~~~~~~~~~-----~~~l~~~~~~Lk~gG~lv~~~~ 132 (187) T PRK08287 99 DAIFIGGSGGNL-----TAIIDWSLAHLHPGGRLVLTFI 132 (187) T ss_pred CEEEECCCccCH-----HHHHHHHHHhcCCCeEEEEEEe Confidence 999997655443 6789999999999999988543 No 51 >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme Probab=99.70 E-value=4.2e-16 Score=126.76 Aligned_cols=121 Identities=14% Similarity=0.229 Sum_probs=97.6 Q ss_pred CCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc Q 024096 13 EDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91 (272) Q Consensus 13 ~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~ 91 (272) +.+..+....+...+..+ .++.+|||+|||+|..+..+++. ++.+++|+|+|+.+++.|+++. .++.+.++ T Consensus 24 ~~~~~~~~~~~~~~l~~~--~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~ 95 (204) T TIGR03587 24 QSLVAAKLAMFARALNRL--PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQG 95 (204) T ss_pred HHHHHHHHHHHHHHHHhc--CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEe Confidence 344445455555555543 46779999999999999999887 6789999999999999998763 25778899 Q ss_pred ccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC Q 024096 92 DYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 92 d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272) |+.+ + ++++||+|++..+++|+++++...+++++.+++ ++++++.++..+ T Consensus 96 d~~~-~~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204) T TIGR03587 96 SLFD-PFKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204) T ss_pred eccC-CCCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC Confidence 9887 5 678999999999999998778899999999987 568888776543 No 52 >smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. Probab=99.70 E-value=2.2e-16 Score=133.45 Aligned_cols=134 Identities=17% Similarity=0.258 Sum_probs=105.4 Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchH----HHHHHHHc-c-----CCEEEEEcCCHHHHHHHHH Q 024096 6 AIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGT----LAIEIVKQ-T-----GCKYTGITLSEEQLKYAEI 75 (272) Q Consensus 6 ~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~----~~~~l~~~-~-----~~~v~gvd~s~~~~~~a~~ 75 (272) .+|..+...++......+..+++.....++.+|||+|||+|. ++..+++. + +.+|+|+|+|+.+++.|++ T Consensus 71 T~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~ 150 (264) T smart00138 71 TRFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARA 150 (264) T ss_pred CcccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHc Confidence 455566666777666666666665555567899999999996 56666654 2 4689999999999999997 Q ss_pred HHH----HcC----------------------CCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHh Q 024096 76 KVR----EAG----------------------LQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCES 128 (272) Q Consensus 76 ~~~----~~g----------------------~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~ 128 (272) .+- ..+ +..++.|.++|+.+.+ +.++||+|+|.++++|+++++...+++++++ T Consensus 151 ~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~ 230 (264) T smart00138 151 GIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAE 230 (264) T ss_pred CCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHH Confidence 531 011 1247899999999887 4789999999999999988788899999999 Q ss_pred cCccCcEEEEE Q 024096 129 LLATHGLLVLQ 139 (272) Q Consensus 129 ~LkpgG~l~i~ 139 (272) .|+|||++++. T Consensus 231 ~L~pGG~L~lg 241 (264) T smart00138 231 ALKPGGYLFLG 241 (264) T ss_pred HhCCCeEEEEE Confidence 99999999984 No 53 >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional Probab=99.70 E-value=4.5e-16 Score=126.99 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=95.0 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC- Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272) .....+++.+...++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...++.++++++++|..+.. T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205) T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205) T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc Confidence 345678888888899999999999999999998862 46999999999999999999998887667999999987754 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ...+||+|++..++++++ +++.+.|+|||++++. T Consensus 139 ~~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~ 172 (205) T PRK13944 139 KHAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP 172 (205) T ss_pred cCCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE Confidence 457899999998887763 3577889999999874 No 54 >TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. Probab=99.69 E-value=6.1e-16 Score=129.00 Aligned_cols=157 Identities=21% Similarity=0.279 Sum_probs=114.9 Q ss_pred HHHHHHHHHHHHHHcCC---CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc Q 024096 16 EVGQMRKVSVLIEKARV---SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91 (272) Q Consensus 16 ~~aq~~~~~~l~~~l~~---~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~ 91 (272) ...|......+++.+.. ..+.+|||+|||+|.++..+++. +..+++++|+++.++..++++.. +++.++.+ T Consensus 13 ~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~ 87 (240) T TIGR02072 13 AKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICG 87 (240) T ss_pred HHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEec Confidence 44566666666666553 34579999999999999999988 66789999999999998887643 37899999 Q ss_pred ccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCC Q 024096 92 DYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPS 170 (272) Q Consensus 92 d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (272) |+.+.+ ++++||+|++..+++|. .++..+++++.++|+|||.+++..+...... ........ ....+++ T Consensus 88 d~~~~~~~~~~fD~vi~~~~l~~~--~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~-----~~~~~~~~---~~~~~~~ 157 (240) T TIGR02072 88 DAEKLPLEDSSFDLIVSNLALQWC--DDLSQALSELARVLKPGGLLAFSTFGPGTLH-----ELRQSFGQ---HGLRYLS 157 (240) T ss_pred chhhCCCCCCceeEEEEhhhhhhc--cCHHHHHHHHHHHcCCCcEEEEEeCCccCHH-----HHHHHHHH---hccCCCC Confidence 999888 66889999999999999 4568999999999999999999765432210 00111111 2234567 Q ss_pred HHHHHHHhhcCCCcEEEEE Q 024096 171 LGRVTSAMTSSSGLCVEHL 189 (272) Q Consensus 171 ~~~~~~~l~~~~Gf~v~~~ 189 (272) .+++...+. ++ |....+ T Consensus 158 ~~~~~~~l~-~~-f~~~~~ 174 (240) T TIGR02072 158 LDELKALLK-NS-FELLTL 174 (240) T ss_pred HHHHHHHHH-Hh-cCCcEE Confidence 777765444 34 765443 No 55 >PLN02585 magnesium protoporphyrin IX methyltransferase Probab=99.68 E-value=1e-15 Score=131.76 Aligned_cols=160 Identities=26% Similarity=0.353 Sum_probs=107.8 Q ss_pred HHHHHHHcCC---CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC----CCCeEEEEcccCC Q 024096 23 VSVLIEKARV---SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL----QDHIRFYLCDYRQ 95 (272) Q Consensus 23 ~~~l~~~l~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~----~~~i~~~~~d~~~ 95 (272) ++.+++.+.. .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.++++....+. ..++.+...|+.+ T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315) T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315) T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh Confidence 3445555432 35789999999999999999986 78999999999999999999876421 1367888999876 Q ss_pred CCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCC------CCCC Q 024096 96 LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPG------GCLP 169 (272) Q Consensus 96 ~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~ 169 (272) + +++||+|++..+++|++++....+++.+.+. .++|. +++.. +...... ....+.. .+++ ..+. T Consensus 209 l--~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~~--p~~~~~~---~l~~~g~-~~~g~~~~~r~y~~ 278 (315) T PLN02585 209 L--SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISFA--PKTLYYD---ILKRIGE-LFPGPSKATRAYLH 278 (315) T ss_pred c--CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEeC--CcchHHH---HHHHHHh-hcCCCCcCceeeeC Confidence 5 3789999999999999876666778877754 55544 44321 2211100 0011111 1211 1234 Q ss_pred CHHHHHHHhhcCCCcEEEEEEecCc Q 024096 170 SLGRVTSAMTSSSGLCVEHLENIGI 194 (272) Q Consensus 170 ~~~~~~~~l~~~~Gf~v~~~~~~~~ 194 (272) +.+++. .+++++||++...+.... T Consensus 279 s~eel~-~lL~~AGf~v~~~~~~~~ 302 (315) T PLN02585 279 AEADVE-RALKKAGWKVARREMTAT 302 (315) T ss_pred CHHHHH-HHHHHCCCEEEEEEEeec Confidence 566666 566679999987665543 No 56 >TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. Probab=99.68 E-value=3.4e-15 Score=119.33 Aligned_cols=138 Identities=19% Similarity=0.197 Sum_probs=105.4 Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272) Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272) +.+.+...++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++..++. +++++.+|+.+.. .++||+| T Consensus 11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~fD~V 86 (179) T TIGR00537 11 LEANLRELKPDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV-RGKFDVI 86 (179) T ss_pred HHHHHHhcCCCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc-CCcccEE Confidence 334444556679999999999999999987 44999999999999999999987765 6889999987654 3589999 Q ss_pred EEechhhccChh-------------------hHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCC Q 024096 106 ISCGMIEHVGHD-------------------YMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGG 166 (272) Q Consensus 106 ~~~~~~~~~~~~-------------------~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 166 (272) +++..+++.++. ....+++++.++|+|||.+++...... T Consensus 87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~---------------------- 144 (179) T TIGR00537 87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN---------------------- 144 (179) T ss_pred EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC---------------------- Confidence 999887766421 145789999999999999998654311 Q ss_pred CCCCHHHHHHHhhcCCCcEEEEEEecC Q 024096 167 CLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272) Q Consensus 167 ~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272) ...++...+ ++.||.+..+...+ T Consensus 145 ---~~~~~~~~l-~~~gf~~~~~~~~~ 167 (179) T TIGR00537 145 ---GEPDTFDKL-DERGFRYEIVAERG 167 (179) T ss_pred ---ChHHHHHHH-HhCCCeEEEEEEee Confidence 133344333 45899888776654 No 57 >PRK13255 thiopurine S-methyltransferase; Reviewed Probab=99.68 E-value=8.7e-15 Score=120.09 Aligned_cols=149 Identities=20% Similarity=0.206 Sum_probs=110.2 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--------------CCCeEEE Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL--------------QDHIRFY 89 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~--------------~~~i~~~ 89 (272) ...++.+...++.+|||+|||.|..+.+||++ |.+|+|+|+|+..++.+.. ++++ ..++++. T Consensus 27 ~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~ 102 (218) T PRK13255 27 QKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIY 102 (218) T ss_pred HHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEE Confidence 34444455567789999999999999999996 9999999999999998643 2222 2478999 Q ss_pred EcccCCCCC--CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCC Q 024096 90 LCDYRQLPK--ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGC 167 (272) Q Consensus 90 ~~d~~~~~~--~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 167 (272) ++|+.++++ ...||.|+-..+++|++.+....+++.+.++|+|||.+++.....+..... . .| . T Consensus 103 ~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~----------g--Pp--~ 168 (218) T PRK13255 103 CGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA----------G--PP--F 168 (218) T ss_pred ECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC----------C--CC--C Confidence 999998862 368999999999999998888999999999999999866644443322110 0 01 2 Q ss_pred CCCHHHHHHHhhcCCCcEEEEEEec Q 024096 168 LPSLGRVTSAMTSSSGLCVEHLENI 192 (272) Q Consensus 168 ~~~~~~~~~~l~~~~Gf~v~~~~~~ 192 (272) ..+.+++.+ +.. .+|++..++.. T Consensus 169 ~~~~~el~~-~~~-~~~~i~~~~~~ 191 (218) T PRK13255 169 SVSDEEVEA-LYA-GCFEIELLERQ 191 (218) T ss_pred CCCHHHHHH-Hhc-CCceEEEeeec Confidence 346677764 443 44888777654 No 58 >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. Probab=99.67 E-value=7.2e-18 Score=121.54 Aligned_cols=95 Identities=26% Similarity=0.486 Sum_probs=65.5 Q ss_pred EEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechhhcc Q 024096 39 LDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMIEHV 114 (272) Q Consensus 39 LDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~ 114 (272) ||+|||+|.++..+.+. +..+++|+|+|+.+++.+++++...+.. +......+..+.. ..++||+|++..+++|+ T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99) T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99) T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS-- T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhhh Confidence 79999999999999988 7889999999999999999988887542 3344444433332 33699999999999999 Q ss_pred ChhhHHHHHHHHHhcCccCcEE Q 024096 115 GHDYMEEFFGCCESLLATHGLL 136 (272) Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l 136 (272) +++..+++++.+.|||||+| T Consensus 80 --~~~~~~l~~~~~~L~pgG~l 99 (99) T PF08242_consen 80 --EDIEAVLRNIYRLLKPGGIL 99 (99) T ss_dssp --S-HHHHHHHHTTT-TSS-EE T ss_pred --hhHHHHHHHHHHHcCCCCCC Confidence 67789999999999999986 No 59 >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] Probab=99.67 E-value=2.8e-15 Score=126.35 Aligned_cols=128 Identities=24% Similarity=0.318 Sum_probs=97.8 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272) +|.+|||+|||+|.+++..++....+++|+|++|..++.+++|++.|+++..++....+....+..++||+|+++=..+ T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~- 240 (300) T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAE- 240 (300) T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhHH- Confidence 8899999999999999998886334699999999999999999999988643444444545444557999999975322 Q ss_pred cChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEec Q 024096 114 VGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENI 192 (272) Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~ 192 (272) -...+...+.+.+||||+++++-+. -+..+.+...+++.||.+..+... T Consensus 241 ----vl~~La~~~~~~lkpgg~lIlSGIl--------------------------~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300) T COG2264 241 ----VLVELAPDIKRLLKPGGRLILSGIL--------------------------EDQAESVAEAYEQAGFEVVEVLER 289 (300) T ss_pred ----HHHHHHHHHHHHcCCCceEEEEeeh--------------------------HhHHHHHHHHHHhCCCeEeEEEec Confidence 2468899999999999999996432 122333344555689999876654 No 60 >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. Probab=99.67 E-value=1.3e-15 Score=119.99 Aligned_cols=110 Identities=15% Similarity=0.263 Sum_probs=88.9 Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEE Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIIS 107 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~ 107 (272) ..++...-.++||+|||.|.++..|+.+ -.+++++|+|+..++.|++++... ++|++.++|+.+..++++||+|+. T Consensus 37 aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~~~FDLIV~ 112 (201) T PF05401_consen 37 AALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPEGRFDLIVL 112 (201) T ss_dssp HHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-EEEEEE T ss_pred HhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCCCCeeEEEE Confidence 3567666689999999999999999998 458999999999999999998643 489999999988778899999999 Q ss_pred echhhccCh-hhHHHHHHHHHhcCccCcEEEEEee Q 024096 108 CGMIEHVGH-DYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 108 ~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) .++++++.+ +++..+++++...|+|||.+++..+ T Consensus 113 SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201) T PF05401_consen 113 SEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201) T ss_dssp ES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE T ss_pred ehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe Confidence 999999975 5788999999999999999999654 No 61 >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Probab=99.67 E-value=2.4e-17 Score=131.16 Aligned_cols=172 Identities=25% Similarity=0.390 Sum_probs=132.9 Q ss_pred cccccccCCCCCCHHHHHHHHH--------HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHH Q 024096 2 TYSCAIFKSEHEDLEVGQMRKV--------SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYA 73 (272) Q Consensus 2 ~y~~~~~~~~~~~l~~aq~~~~--------~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a 73 (272) .|..++|+...+.++..-..++ ..++..++..+-.++||+|||||..+..+..+ -.+++|+|+|.+|++.| T Consensus 85 aYVe~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA 163 (287) T COG4976 85 AYVETLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKA 163 (287) T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHH Confidence 4777888888877777766655 45666677777789999999999999888776 56899999999999999 Q ss_pred HHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc Q 024096 74 EIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE 150 (272) Q Consensus 74 ~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 150 (272) .++ |+.+ ...++|...+. .+++||+|++..++.+++ ++..++.-....|+|||.+.++.-+.+.+. T Consensus 164 ~eK----g~YD--~L~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~--- 232 (287) T COG4976 164 HEK----GLYD--TLYVAEAVLFLEDLTQERFDLIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDG--- 232 (287) T ss_pred Hhc----cchH--HHHHHHHHHHhhhccCCcccchhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCC--- Confidence 886 4432 34555544332 458999999999999995 568999999999999999999876655441 Q ss_pred ccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC Q 024096 151 YRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272) Q Consensus 151 ~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272) .--+.|...+.+.+.+++.+.+..||+++.+++.+ T Consensus 233 --------~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287) T COG4976 233 --------GFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287) T ss_pred --------CeecchhhhhccchHHHHHHHHhcCceEEEeeccc Confidence 11123445566778888888889999999998864 No 62 >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. Probab=99.67 E-value=2.1e-15 Score=124.83 Aligned_cols=167 Identities=25% Similarity=0.395 Sum_probs=116.5 Q ss_pred HHHHHHHHcCC----CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC Q 024096 22 KVSVLIEKARV----SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272) Q Consensus 22 ~~~~l~~~l~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272) .+..+.+.+.. ..+.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++...+.. ++.+...|+.+.+ T Consensus 29 ~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~ 106 (224) T TIGR01983 29 RLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLA 106 (224) T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhh Confidence 34555555442 34789999999999999998885 678999999999999999988876642 6889999988776 Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccC----CCCCCCH Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFP----GGCLPSL 171 (272) Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~~~~~ 171 (272) ..++||+|++..+++|+ .++..+++++.++|+|||.+++..................++.....+ ...+.+. T Consensus 107 ~~~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (224) T TIGR01983 107 EKGAKSFDVVTCMEVLEHV--PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKGTHDWEKFIKP 184 (224) T ss_pred cCCCCCccEEEehhHHHhC--CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCCcCChhhcCCH Confidence 23789999999999999 456899999999999999999865432110000000000011111101 1124456 Q ss_pred HHHHHHhhcCCCcEEEEEEecC Q 024096 172 GRVTSAMTSSSGLCVEHLENIG 193 (272) Q Consensus 172 ~~~~~~l~~~~Gf~v~~~~~~~ 193 (272) .++.+ +++++||+++++.... T Consensus 185 ~~l~~-~l~~~G~~i~~~~~~~ 205 (224) T TIGR01983 185 SELTS-WLESAGLRVKDVKGLV 205 (224) T ss_pred HHHHH-HHHHcCCeeeeeeeEE Confidence 66764 4557999999887654 No 63 >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] Probab=99.67 E-value=8e-15 Score=114.59 Aligned_cols=122 Identities=24% Similarity=0.300 Sum_probs=103.1 Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE Q 024096 12 HEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272) Q Consensus 12 ~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272) ...+.....+. ..+.+|.+.++++++|||||+|+.+..++.. +.++|+++|-+++.++..++|+++.|. +++.++. T Consensus 14 ~~p~TK~EIRa--l~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~ 90 (187) T COG2242 14 GGPMTKEEIRA--LTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVE 90 (187) T ss_pred CCCCcHHHHHH--HHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEe Confidence 34444444443 3678899999999999999999999999965 789999999999999999999999996 6999999 Q ss_pred cccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 91 CDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 91 ~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) +|+.+.. ...++|.|+..+. ..+ +.+++.+...|||||++++...+ T Consensus 91 g~Ap~~L~~~~~~daiFIGGg-~~i-----~~ile~~~~~l~~ggrlV~nait 137 (187) T COG2242 91 GDAPEALPDLPSPDAIFIGGG-GNI-----EEILEAAWERLKPGGRLVANAIT 137 (187) T ss_pred ccchHhhcCCCCCCEEEECCC-CCH-----HHHHHHHHHHcCcCCeEEEEeec Confidence 9987765 3347999999887 544 79999999999999999986554 No 64 >PRK06202 hypothetical protein; Provisional Probab=99.66 E-value=1.8e-15 Score=125.89 Aligned_cols=153 Identities=16% Similarity=0.255 Sum_probs=104.3 Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccE Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDR 104 (272) Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~ 104 (272) ...++.+|||+|||+|.++..+++. ++.+++|+|+|+.+++.++++.... ++.+.+.+...++ .+++||+ T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~ 132 (232) T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDV 132 (232) T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccE Confidence 3356789999999999999888753 3469999999999999998875432 4566777766666 5679999 Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCc-chhh-hhcccCC-----CCCCCHHHHHHH Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLS-PGFI-KEYIFPG-----GCLPSLGRVTSA 177 (272) Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-~~~~-~~~~~p~-----~~~~~~~~~~~~ 177 (272) |+++.+++|+++++...+++++.++++ |.+++.+...+...+..+... .... ..++... ...++.+++.+. T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~l 210 (232) T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAAL 210 (232) T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHH Confidence 999999999987767889999999998 666676666543211111000 0001 0011111 134677777754 Q ss_pred hhcCCCcEEEEEEe Q 024096 178 MTSSSGLCVEHLEN 191 (272) Q Consensus 178 l~~~~Gf~v~~~~~ 191 (272) +++ ||.+...-- T Consensus 211 -l~~-Gf~~~~~~~ 222 (232) T PRK06202 211 -APQ-GWRVERQWP 222 (232) T ss_pred -hhC-CCeEEeccc Confidence 445 998875533 No 65 >PRK06922 hypothetical protein; Provisional Probab=99.66 E-value=1.5e-15 Score=139.39 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=96.9 Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccE Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDR 104 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~ 104 (272) .++..++.+|||+|||+|..+..+++. ++.+++|+|+|+.+++.++++....+ .++.++++|..+++ ++++||+ T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDv 490 (677) T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDT 490 (677) T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEE Confidence 344557889999999999999999887 78899999999999999998876554 36888999988876 4578999 Q ss_pred EEEechhhccC-----------hhhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 105 IISCGMIEHVG-----------HDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 105 V~~~~~~~~~~-----------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) |+++.++||+. .++...+++++.++|||||++++.+...+. T Consensus 491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~~E 542 (677) T PRK06922 491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIMTE 542 (677) T ss_pred EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCccCC Confidence 99999988752 356789999999999999999998766544 No 66 >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional Probab=99.66 E-value=2.5e-15 Score=123.15 Aligned_cols=112 Identities=21% Similarity=0.260 Sum_probs=94.1 Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272) Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272) +-.....+++.+.+.++.+|||||||+|.++..+++.. +.+|+++|+++.+++.++++++..+. .++.++++|.... T Consensus 61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~ 139 (212) T PRK13942 61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLG 139 (212) T ss_pred cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccC Confidence 34556778888999999999999999999999988872 46999999999999999999998887 4799999998765 Q ss_pred C-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 97 P-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 97 ~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) . ...+||+|++.....+++ +.+.+.|||||++++. T Consensus 140 ~~~~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212) T PRK13942 140 YEENAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212) T ss_pred CCcCCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE Confidence 5 557899999987766552 3456689999999884 No 67 >PLN03075 nicotianamine synthase; Provisional Probab=99.66 E-value=2.1e-15 Score=127.52 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=92.8 Q ss_pred HcCCCCCCEEEEECCCchHHHH-HHH-Hc-cCCEEEEEcCCHHHHHHHHHHHHH-cCCCCCeEEEEcccCCCC-CCCCcc Q 024096 29 KARVSKGQEVLDIGCGWGTLAI-EIV-KQ-TGCKYTGITLSEEQLKYAEIKVRE-AGLQDHIRFYLCDYRQLP-KANKYD 103 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~-~l~-~~-~~~~v~gvd~s~~~~~~a~~~~~~-~g~~~~i~~~~~d~~~~~-~~~~fD 103 (272) .+...++.+|+|||||.|.++. .++ .. ++.+++|+|+++.+++.|++.+.. .++.++++|..+|+.+.. ..+.|| T Consensus 118 ~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FD 197 (296) T PLN03075 118 QHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYD 197 (296) T ss_pred HhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcC Confidence 3333477899999999885543 333 34 778999999999999999999964 788889999999998876 447899 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +|++. +++++..++...+++++.+.|+|||.+++.. T Consensus 198 lVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296) T PLN03075 198 VVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296) T ss_pred EEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec Confidence 99999 9999876778999999999999999999853 No 68 >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional Probab=99.66 E-value=6.6e-15 Score=119.55 Aligned_cols=121 Identities=21% Similarity=0.381 Sum_probs=98.0 Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE Q 024096 12 HEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY 89 (272) Q Consensus 12 ~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~ 89 (272) +.++.....+. ..+.++.+.++.+|||+|||+|.++..+++. ++.+|+++|+++.+++.++++++..++.+++.++ T Consensus 20 ~~~~t~~~~r~--~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~ 97 (198) T PRK00377 20 EIPMTKEEIRA--LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLI 97 (198) T ss_pred CCCCCHHHHHH--HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEE Confidence 34455555443 3467888999999999999999999998875 3579999999999999999999998866789999 Q ss_pred EcccCCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 90 LCDYRQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 90 ~~d~~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+|..+.. ..+.||.|++... ..++..+++.+.+.|+|||++++. T Consensus 98 ~~d~~~~l~~~~~~~D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198) T PRK00377 98 KGEAPEILFTINEKFDRIFIGGG-----SEKLKEIISASWEIIKKGGRIVID 144 (198) T ss_pred EechhhhHhhcCCCCCEEEECCC-----cccHHHHHHHHHHHcCCCcEEEEE Confidence 99987643 3468999998542 135578999999999999999874 No 69 >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. Probab=99.65 E-value=3.5e-15 Score=122.73 Aligned_cols=111 Identities=25% Similarity=0.277 Sum_probs=93.5 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC- Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272) ..+..+++.+.+.++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.|++++...++ ++++++++|..+.. T Consensus 64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~ 142 (215) T TIGR00080 64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWE 142 (215) T ss_pred HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCc Confidence 345778888889999999999999999999999873 35799999999999999999999987 58999999987754 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ...+||+|++.....+++ +.+.+.|+|||++++.. T Consensus 143 ~~~~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215) T TIGR00080 143 PLAPYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215) T ss_pred ccCCCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE Confidence 446899999987666553 34678899999999853 No 70 >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. Probab=99.65 E-value=2.3e-15 Score=118.37 Aligned_cols=157 Identities=14% Similarity=0.149 Sum_probs=115.2 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KAN 100 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~ 100 (272) +.+.+. ++||.+|||+|||.|.+..+|.+..+++..|+|++++.+..+.++ .+.++++|+++.- +++ T Consensus 5 ~~I~~~--I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~ 74 (193) T PF07021_consen 5 QIIAEW--IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQ 74 (193) T ss_pred HHHHHH--cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCC Confidence 344554 458999999999999999999987789999999999988887765 5789999987744 789 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc--c----cCcch--hhhhcccCCCCCCCHH Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE--Y----RLSPG--FIKEYIFPGGCLPSLG 172 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--~----~~~~~--~~~~~~~p~~~~~~~~ 172 (272) +||.|+.+.+++++ .++..+++++.|+ |...+++.+.+....... . ..... .-.+|-.|+-++.+.. T Consensus 75 sFD~VIlsqtLQ~~--~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~ 149 (193) T PF07021_consen 75 SFDYVILSQTLQAV--RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIK 149 (193) T ss_pred CccEEehHhHHHhH--hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHH Confidence 99999999999999 6778998888765 666777544432221000 0 00111 1234556777888888 Q ss_pred HHHHHhhcCCCcEEEEEEecCccH Q 024096 173 RVTSAMTSSSGLCVEHLENIGIHY 196 (272) Q Consensus 173 ~~~~~l~~~~Gf~v~~~~~~~~~~ 196 (272) ++. .+.++.|++|.+..-+.... T Consensus 150 DFe-~lc~~~~i~I~~~~~~~~~~ 172 (193) T PF07021_consen 150 DFE-DLCRELGIRIEERVFLDGGR 172 (193) T ss_pred HHH-HHHHHCCCEEEEEEEEcCCC Confidence 886 56777999998877665433 No 71 >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed Probab=99.65 E-value=3.9e-15 Score=125.18 Aligned_cols=124 Identities=24% Similarity=0.299 Sum_probs=92.2 Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272) ..++.+|||+|||+|.++..+++....+++|+|+|+.+++.++++...+++..++.+..+| .+||+|+++... T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-------~~fD~Vvani~~ 189 (250) T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-------LKADVIVANILA 189 (250) T ss_pred cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-------CCcCEEEEcCcH Confidence 3578899999999999999877753346999999999999999999988775445544433 279999987443 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEe Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLEN 191 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272) + ....+++++.++|||||+++++.+.. ...+++.. .+++.||.+..... T Consensus 190 ~-----~~~~l~~~~~~~LkpgG~lilsgi~~-------------------------~~~~~v~~-~l~~~Gf~~~~~~~ 238 (250) T PRK00517 190 N-----PLLELAPDLARLLKPGGRLILSGILE-------------------------EQADEVLE-AYEEAGFTLDEVLE 238 (250) T ss_pred H-----HHHHHHHHHHHhcCCCcEEEEEECcH-------------------------hhHHHHHH-HHHHCCCEEEEEEE Confidence 2 34688999999999999999965431 12233443 44468999887665 Q ss_pred cC Q 024096 192 IG 193 (272) Q Consensus 192 ~~ 193 (272) .+ T Consensus 239 ~~ 240 (250) T PRK00517 239 RG 240 (250) T ss_pred eC Confidence 43 No 72 >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional Probab=99.65 E-value=3.9e-15 Score=130.83 Aligned_cols=129 Identities=15% Similarity=0.288 Sum_probs=101.3 Q ss_pred ccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC Q 024096 5 CAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQ 83 (272) Q Consensus 5 ~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~ 83 (272) .++|..+. ++... +.+++.++...+.+|||+|||+|.++..++++ ++.+|+++|+|+.+++.++++++.++.. T Consensus 205 ~gVFs~~~--LD~Gt----rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~ 278 (378) T PRK15001 205 ANVFSRTG--LDIGA----RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE 278 (378) T ss_pred CCccCCCC--cChHH----HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc Confidence 46676544 33222 33666666555679999999999999999988 7889999999999999999999887643 Q ss_pred --CCeEEEEcccCCCCCCCCccEEEEechhhcc---ChhhHHHHHHHHHhcCccCcEEEEE Q 024096 84 --DHIRFYLCDYRQLPKANKYDRIISCGMIEHV---GHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 84 --~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .++++...|.....++.+||+|+++..++.. .+....++++.+.+.|+|||.+++. T Consensus 279 ~~~~v~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378) T PRK15001 279 ALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378) T ss_pred cCceEEEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE Confidence 3689999987654344689999999887643 3344568999999999999999986 No 73 >PLN02336 phosphoethanolamine N-methyltransferase Probab=99.65 E-value=2.1e-15 Score=138.31 Aligned_cols=124 Identities=17% Similarity=0.209 Sum_probs=102.4 Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC- Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ- 95 (272) Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~- 95 (272) +.+......+++.+...++.+|||+|||+|.++..+++. ..+++|+|+++.+++.+++.. +..+++.++++|+.. T Consensus 20 ~~~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~ 95 (475) T PLN02336 20 DLDKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSP 95 (475) T ss_pred hcCchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEeccccc Confidence 344444567777877777889999999999999999987 679999999999998876532 223579999999864 Q ss_pred -CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC Q 024096 96 -LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 96 -~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272) ++ ++++||+|++..+++|+++++...+++++.++|||||++++.+.+.. T Consensus 96 ~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475) T PLN02336 96 DLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475) T ss_pred ccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC Confidence 44 56799999999999999887788999999999999999999876643 No 74 >KOG1271 consensus Methyltransferases [General function prediction only] Probab=99.64 E-value=3.8e-15 Score=114.64 Aligned_cols=126 Identities=25% Similarity=0.410 Sum_probs=104.6 Q ss_pred HHHHHHHHHHHHHcC---CCCC-CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc Q 024096 17 VGQMRKVSVLIEKAR---VSKG-QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91 (272) Q Consensus 17 ~aq~~~~~~l~~~l~---~~~~-~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~ 91 (272) .|+.+.++++.+... +... .+|||+|||.|.+...|++. ...+.+|+|.|+..++.|+..++..+.++.|+|.+. T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227) T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227) T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe Confidence 578888888887766 4444 49999999999999999998 566799999999999999999999999888999999 Q ss_pred ccCCCC-CCCCccEEEEechhhccCh------hhHHHHHHHHHhcCccCcEEEEEeec Q 024096 92 DYRQLP-KANKYDRIISCGMIEHVGH------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 92 d~~~~~-~~~~fD~V~~~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) |+.+.. ...+||+|.-.+.+..++- ..+..++..+.++|+|||+++|.... T Consensus 126 DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN 183 (227) T KOG1271|consen 126 DITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN 183 (227) T ss_pred eccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecC Confidence 998866 6689999998887766521 22345788899999999999996443 No 75 >PRK14967 putative methyltransferase; Provisional Probab=99.64 E-value=3.9e-14 Score=117.14 Aligned_cols=117 Identities=19% Similarity=0.286 Sum_probs=92.4 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272) ..+..++..+.+.++.+|||+|||+|.++..+++....+++++|+++.+++.+++++..++. ++.++++|+.+..+++ T Consensus 23 ~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~ 100 (223) T PRK14967 23 QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFR 100 (223) T ss_pred HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCC Confidence 33455566667788899999999999999999886334999999999999999999988775 5889999987654557 Q ss_pred CccEEEEechhhccCh-------------------hhHHHHHHHHHhcCccCcEEEEE Q 024096 101 KYDRIISCGMIEHVGH-------------------DYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~-------------------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +||+|+++........ .....+++++.++|||||++++. T Consensus 101 ~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223) T PRK14967 101 PFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223) T ss_pred CeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE Confidence 8999999854332211 12456888999999999999974 No 76 >PRK05785 hypothetical protein; Provisional Probab=99.63 E-value=5.7e-15 Score=122.14 Aligned_cols=89 Identities=18% Similarity=0.281 Sum_probs=78.6 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhh Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIE 112 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~ 112 (272) ++.+|||+|||+|.++..+++..+.+|+|+|+|++|++.+++. ..++++|++++| ++++||+|++..+++ T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226) T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALH 121 (226) T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhh Confidence 4789999999999999999886557999999999999998764 135789999999 778999999999999 Q ss_pred ccChhhHHHHHHHHHhcCccC Q 024096 113 HVGHDYMEEFFGCCESLLATH 133 (272) Q Consensus 113 ~~~~~~~~~~l~~~~~~Lkpg 133 (272) |+ .++...+++++|+|||. T Consensus 122 ~~--~d~~~~l~e~~RvLkp~ 140 (226) T PRK05785 122 AS--DNIEKVIAEFTRVSRKQ 140 (226) T ss_pred cc--CCHHHHHHHHHHHhcCc Confidence 99 56689999999999994 No 77 >COG4123 Predicted O-methyltransferase [General function prediction only] Probab=99.63 E-value=5.8e-15 Score=121.36 Aligned_cols=113 Identities=24% Similarity=0.337 Sum_probs=96.9 Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCc Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKY 102 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~f 102 (272) ..........+|||+|||+|.++..++++ ..+++++||+++.+.+.|+++.+.+++.+++++++.|+.+.. ...+| T Consensus 37 ~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~f 116 (248) T COG4123 37 AAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASF 116 (248) T ss_pred HhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccccc Confidence 34445556789999999999999999999 669999999999999999999999999999999999999987 33579 Q ss_pred cEEEEechhhccCh----------------hhHHHHHHHHHhcCccCcEEEEE Q 024096 103 DRIISCGMIEHVGH----------------DYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 103 D~V~~~~~~~~~~~----------------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) |+|+|+....-.+. -+.+++++.+.++|||||.+.+. T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V 169 (248) T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFV 169 (248) T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEE Confidence 99999986543322 24577999999999999999984 No 78 >PRK04266 fibrillarin; Provisional Probab=99.63 E-value=1.6e-14 Score=119.03 Aligned_cols=142 Identities=16% Similarity=0.141 Sum_probs=99.4 Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----CCCCCc Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----PKANKY 102 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~f 102 (272) +.+++.++.+|||+|||+|.++..+++. ...+|+++|+++.+++.+.++++.. .++.++.+|+.+. +..++| T Consensus 66 ~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~ 142 (226) T PRK04266 66 KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKV 142 (226) T ss_pred hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccC Confidence 4688899999999999999999999987 4469999999999999887776653 4789999998752 123579 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCC Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSS 182 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~ 182 (272) |+|++.... +.....+++++.++|||||+++++....+-+ ...... ....+.. ..++++ T Consensus 143 D~i~~d~~~----p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d----~~~~~~------------~~~~~~~-~~l~~a 201 (226) T PRK04266 143 DVIYQDVAQ----PNQAEIAIDNAEFFLKDGGYLLLAIKARSID----VTKDPK------------EIFKEEI-RKLEEG 201 (226) T ss_pred CEEEECCCC----hhHHHHHHHHHHHhcCCCcEEEEEEeccccc----CcCCHH------------HHHHHHH-HHHHHc Confidence 999964221 1122456899999999999999952211100 000000 0012233 345568 Q ss_pred CcEEEEEEecC Q 024096 183 GLCVEHLENIG 193 (272) Q Consensus 183 Gf~v~~~~~~~ 193 (272) ||++....+++ T Consensus 202 GF~~i~~~~l~ 212 (226) T PRK04266 202 GFEILEVVDLE 212 (226) T ss_pred CCeEEEEEcCC Confidence 99999888865 No 79 >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed Probab=99.63 E-value=3.3e-15 Score=121.57 Aligned_cols=106 Identities=24% Similarity=0.264 Sum_probs=87.9 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCC---CCCCccEEEEe Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-RQLP---KANKYDRIISC 108 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~---~~~~fD~V~~~ 108 (272) ++.+|||+|||+|..+..+++. ++.+++|+|+|+.+++.+++++...++ .++.++++|+ ..++ ++++||+|++. T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202) T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202) T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE Confidence 6789999999999999999887 678999999999999999999988877 5799999998 6554 35789999997 Q ss_pred chhhccC------hhhHHHHHHHHHhcCccCcEEEEEe Q 024096 109 GMIEHVG------HDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 109 ~~~~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ....+.. ......+++++.++|||||++++.. T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202) T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202) T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc Confidence 6543221 0124689999999999999999853 No 80 >TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. Probab=99.62 E-value=3.5e-14 Score=121.74 Aligned_cols=103 Identities=26% Similarity=0.376 Sum_probs=85.4 Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272) .++.+|||+|||+|.++..+++....+|+++|+++.+++.++++...+++..++.+...+.... ..++||+|+++...+ T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~~ 236 (288) T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILAE 236 (288) T ss_pred CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCHH Confidence 4678999999999999998887644589999999999999999999998877777777764332 346899999976544 Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) + ...+++++.++|||||+++++.+ T Consensus 237 ~-----l~~ll~~~~~~LkpgG~li~sgi 260 (288) T TIGR00406 237 V-----IKELYPQFSRLVKPGGWLILSGI 260 (288) T ss_pred H-----HHHHHHHHHHHcCCCcEEEEEeC Confidence 3 36889999999999999998654 No 81 >PRK14968 putative methyltransferase; Provisional Probab=99.60 E-value=5.3e-14 Score=113.07 Aligned_cols=114 Identities=22% Similarity=0.338 Sum_probs=90.8 Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEcccCCCCCCCCccE Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH-IRFYLCDYRQLPKANKYDR 104 (272) Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~-i~~~~~d~~~~~~~~~fD~ 104 (272) +.+.+...++.+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++..+++.++ +.++++|+.+...+.+||+ T Consensus 15 l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~ 93 (188) T PRK14968 15 LAENAVDKKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDV 93 (188) T ss_pred HHHhhhccCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceE Confidence 334444467889999999999999999997 88999999999999999999988877533 8899999766444458999 Q ss_pred EEEechhhccC-------------------hhhHHHHHHHHHhcCccCcEEEEEe Q 024096 105 IISCGMIEHVG-------------------HDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 105 V~~~~~~~~~~-------------------~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) |+++..+.+.+ ......+++++.++|||||.+++.. T Consensus 94 vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188) T PRK14968 94 ILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188) T ss_pred EEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE Confidence 99876543311 1234678999999999999998743 No 82 >TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea. Probab=99.60 E-value=1.8e-14 Score=125.83 Aligned_cols=115 Identities=24% Similarity=0.316 Sum_probs=94.9 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKY 102 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~f 102 (272) ..+++.....++.+|||+|||+|.++..++.. +.+++|+|+++.++..++.+++..++++ +.+.++|+.+++ .+++| T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~ 249 (329) T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESV 249 (329) T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCC Confidence 34555667788999999999999999887764 8899999999999999999999988864 899999999988 56799 Q ss_pred cEEEEechhhcc-------ChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 103 DRIISCGMIEHV-------GHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 103 D~V~~~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) |+|+++...... ..+....+++++.++|||||++++.. T Consensus 250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329) T TIGR01177 250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329) T ss_pred CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE Confidence 999997543211 11225789999999999999998853 No 83 >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] Probab=99.59 E-value=3.3e-14 Score=113.52 Aligned_cols=111 Identities=23% Similarity=0.278 Sum_probs=96.1 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-CCC Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-PKA 99 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~~~ 99 (272) .....+++.+.++++++|||||||+|..+..|++. ..+|+.+|..+...+.|+++++..|+. |+.++++|...- ++. T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~ 136 (209) T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEE 136 (209) T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCC Confidence 34578899999999999999999999999999997 449999999999999999999999986 599999997664 466 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) .+||.|+.......+|.. +.+.||+||++++-.- T Consensus 137 aPyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG 170 (209) T COG2518 137 APYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG 170 (209) T ss_pred CCcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc Confidence 899999999988888643 4556899999998443 No 84 >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... Probab=99.59 E-value=2e-14 Score=122.32 Aligned_cols=103 Identities=29% Similarity=0.388 Sum_probs=80.2 Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272) ..++.+|||+|||+|.+++..++....+|+++|++|..++.|++|+..|++.+++.+. ...+. ...+||+|+++-.. T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~-~~~~~dlvvANI~~ 235 (295) T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL-VEGKFDLVVANILA 235 (295) T ss_dssp SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT-CCS-EEEEEEES-H T ss_pred ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc-ccccCCEEEECCCH Confidence 4577899999999999999988863348999999999999999999999998766553 22222 23899999997543 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) . .+..++..+.+.|+|||+++++-+. T Consensus 236 ~-----vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295) T PF06325_consen 236 D-----VLLELAPDIASLLKPGGYLILSGIL 261 (295) T ss_dssp H-----HHHHHHHHCHHHEEEEEEEEEEEEE T ss_pred H-----HHHHHHHHHHHhhCCCCEEEEcccc Confidence 3 3478888999999999999997553 No 85 >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A .... Probab=99.59 E-value=7.4e-15 Score=108.96 Aligned_cols=106 Identities=27% Similarity=0.496 Sum_probs=89.0 Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechh Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMI 111 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~ 111 (272) |.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++.++++++++|+.+.. .+++||+|+++..+ T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117) T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117) T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC Confidence 569999999999999999987448999999999999999999999988788999999998865 56899999999887 Q ss_pred hccCh------hhHHHHHHHHHhcCccCcEEEEEe Q 024096 112 EHVGH------DYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 112 ~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ..... +....+++++.++|||||.+++.. T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117) T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117) T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe Confidence 64311 234688999999999999999854 No 86 >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional Probab=99.58 E-value=4.2e-14 Score=123.46 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=91.7 Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272) Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272) .+++.+......+|||+|||+|.++..+++. ++.+++++|+|+.+++.++++++.+++. .+++..|.... .+++|| T Consensus 187 lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~-~~~~fD 263 (342) T PRK09489 187 LLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD-IKGRFD 263 (342) T ss_pred HHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc-cCCCcc Confidence 3445555444568999999999999999988 6789999999999999999999998863 56777886543 347899 Q ss_pred EEEEechhhccC---hhhHHHHHHHHHhcCccCcEEEEEe Q 024096 104 RIISCGMIEHVG---HDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 104 ~V~~~~~~~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +|+++..+|+.. ......+++++.+.|||||.+++.. T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342) T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342) T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE Confidence 999999887632 2456789999999999999998854 No 87 >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA. Probab=99.58 E-value=1.3e-14 Score=117.46 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=88.3 Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEE Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIIS 107 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~ 107 (272) ....+|||||||+|.++..+++. ++..++|+|+++.+++.+++++...++. +++++++|+.+++ +++.+|.|++ T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194) T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFL 93 (194) T ss_pred CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEE Confidence 35569999999999999999988 7889999999999999999999888885 8999999997653 3458999999 Q ss_pred echhhccChh------hHHHHHHHHHhcCccCcEEEEEe Q 024096 108 CGMIEHVGHD------YMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 108 ~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +....+...+ ....+++++.++|||||.+++.+ T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194) T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194) T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe Confidence 8654433110 01579999999999999999853 No 88 >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. Probab=99.57 E-value=9.1e-14 Score=118.79 Aligned_cols=107 Identities=23% Similarity=0.365 Sum_probs=87.2 Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272) .++.+|||+|||+|.++..+++. ++.+++++|+|+.+++.|++++..+++.+++.++++|+.+..++++||+|+++... T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy 199 (284) T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY 199 (284) T ss_pred CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC Confidence 45579999999999999999987 67899999999999999999999998877899999998653344589999997432 Q ss_pred ------hcc-------C----------hhhHHHHHHHHHhcCccCcEEEEE Q 024096 112 ------EHV-------G----------HDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 112 ------~~~-------~----------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .++ + .+....+++++.+.|+|||++++. T Consensus 200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284) T TIGR03533 200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284) T ss_pred CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE Confidence 111 1 022367889999999999999874 No 89 >TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. Probab=99.57 E-value=3.7e-14 Score=114.83 Aligned_cols=154 Identities=13% Similarity=0.182 Sum_probs=102.0 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC--CC Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LP--KA 99 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~--~~ 99 (272) ++.+.+.+ +++.+|||+|||+|.++..+++..+..++|+|+++.+++.+++. +++++++|+.+ ++ ++ T Consensus 4 ~~~i~~~i--~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~ 73 (194) T TIGR02081 4 LESILNLI--PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPD 73 (194) T ss_pred HHHHHHhc--CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCC Confidence 34455554 36789999999999999988876667899999999999888642 46888899875 32 45 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCc--cccccC-cchhhh----hc-ccCCCCCCCH Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQC--YDEYRL-SPGFIK----EY-IFPGGCLPSL 171 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~--~~~~~~-~~~~~~----~~-~~p~~~~~~~ 171 (272) ++||+|++..+++|+ .++..+++++.+.++ .++++.+...... ...... ...... .+ -.+..++.+. T Consensus 74 ~sfD~Vi~~~~l~~~--~d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 148 (194) T TIGR02081 74 KSFDYVILSQTLQAT--RNPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTI 148 (194) T ss_pred CCcCEEEEhhHhHcC--cCHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcH Confidence 789999999999999 456888998887655 4444322111000 000000 000000 00 1123356778 Q ss_pred HHHHHHhhcCCCcEEEEEEec Q 024096 172 GRVTSAMTSSSGLCVEHLENI 192 (272) Q Consensus 172 ~~~~~~l~~~~Gf~v~~~~~~ 192 (272) +++. .+.+++||++.....+ T Consensus 149 ~~~~-~ll~~~Gf~v~~~~~~ 168 (194) T TIGR02081 149 ADFE-DLCGELNLRILDRAAF 168 (194) T ss_pred HHHH-HHHHHCCCEEEEEEEe Confidence 8887 4666799999887665 No 90 >PRK07402 precorrin-6B methylase; Provisional Probab=99.57 E-value=1.1e-13 Score=112.18 Aligned_cols=115 Identities=20% Similarity=0.200 Sum_probs=92.1 Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P 97 (272) Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~ 97 (272) ...-..+++.+...++.+|||+|||+|.++..+++. ++.+++++|+++.+++.+++++...++ ++++++.+|+.+. + T Consensus 26 ~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~ 104 (196) T PRK07402 26 REVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLA 104 (196) T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHh Confidence 333345677888888999999999999999999876 678999999999999999999988887 4799999998652 2 Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ....+|.|+... ......+++++.+.|+|||++++... T Consensus 105 ~~~~~~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196) T PRK07402 105 QLAPAPDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196) T ss_pred hCCCCCCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee Confidence 223467776532 13457899999999999999998654 No 91 >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. Probab=99.56 E-value=2.8e-13 Score=113.96 Aligned_cols=117 Identities=25% Similarity=0.407 Sum_probs=92.3 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272) ..++.+++.+. ..+.+|||+|||+|.++..+++. ++.+++|+|+++.+++.+++++...++. ++.++++|+.+..+. T Consensus 75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~ 152 (251) T TIGR03534 75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPG 152 (251) T ss_pred HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcC Confidence 34455566554 34569999999999999999987 6789999999999999999999988874 799999998764456 Q ss_pred CCccEEEEechhhc------cCh------------------hhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEH------VGH------------------DYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~------~~~------------------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ++||+|+++..... +.. .....+++++.++|+|||.+++. T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251) T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251) T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE Confidence 78999999754331 111 11246889999999999999984 No 92 >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed Probab=99.56 E-value=9.2e-14 Score=114.07 Aligned_cols=113 Identities=19% Similarity=0.169 Sum_probs=92.8 Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC- Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272) Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272) +......+++.+.+.++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...++. ++.+.++|..+.. T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~ 140 (212) T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKGWP 140 (212) T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccCCC Confidence 3444567788888889999999999999999988876 458999999999999999999988874 6999999976543 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ..++||+|++...++++ .+.+.+.|+|||++++... T Consensus 141 ~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212) T PRK00312 141 AYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212) T ss_pred cCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc Confidence 44789999998766655 2456789999999998544 No 93 >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... Probab=99.55 E-value=3.4e-14 Score=115.44 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=88.6 Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272) Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272) .+-..+..+++.+.+++|++|||||||+|..+..++.. ...+|+++|.++...+.|++++...+.. ++.++++|... T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~ 134 (209) T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSE 134 (209) T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGG T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhh Confidence 34455688999999999999999999999999999987 2347999999999999999999998874 89999999766 Q ss_pred CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 96 LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 96 ~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .. ...+||.|++......+|. . +.+.|++||++++- T Consensus 135 g~~~~apfD~I~v~~a~~~ip~----~----l~~qL~~gGrLV~p 171 (209) T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIPE----A----LLEQLKPGGRLVAP 171 (209) T ss_dssp TTGGG-SEEEEEESSBBSS--H----H----HHHTEEEEEEEEEE T ss_pred ccccCCCcCEEEEeeccchHHH----H----HHHhcCCCcEEEEE Confidence 44 4578999999987776632 2 56678999999984 No 94 >KOG2361 consensus Predicted methyltransferase [General function prediction only] Probab=99.55 E-value=2.1e-14 Score=115.60 Aligned_cols=150 Identities=15% Similarity=0.242 Sum_probs=112.9 Q ss_pred EEEEECCCchHHHHHHHHc-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe Q 024096 37 EVLDIGCGWGTLAIEIVKQ-TG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272) Q Consensus 37 ~vLDiG~G~G~~~~~l~~~-~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272) +|||+|||.|.....+.+. ++ ..++++|.||..++..+++..... .++...+.|+.... ..+++|.|+++ T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264) T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264) T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEE Confidence 8999999999999999887 44 799999999999999988765443 46666666654432 56899999999 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhh--hhcccCCCC---CCCHHHHHHHhhcCCC Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFI--KEYIFPGGC---LPSLGRVTSAMTSSSG 183 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~--~~~~~p~~~---~~~~~~~~~~l~~~~G 183 (272) .++..++++.....+++++++|||||.+++.|+...+-....+. ....+ +-|+...|. +.+.+++ +.+..++| T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~-~~~~i~~nfYVRgDGT~~YfF~~eeL-~~~f~~ag 229 (264) T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFK-KGQCISENFYVRGDGTRAYFFTEEEL-DELFTKAG 229 (264) T ss_pred EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhcc-CCceeecceEEccCCceeeeccHHHH-HHHHHhcc Confidence 99999999999999999999999999999999887665433332 12222 334554444 2345555 46666799 Q ss_pred cEEEEEE Q 024096 184 LCVEHLE 190 (272) Q Consensus 184 f~v~~~~ 190 (272) |..++.. T Consensus 230 f~~~~~~ 236 (264) T KOG2361|consen 230 FEEVQLE 236 (264) T ss_pred cchhccc Confidence 9776543 No 95 >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional Probab=99.55 E-value=8.7e-14 Score=121.90 Aligned_cols=116 Identities=16% Similarity=0.209 Sum_probs=96.4 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KA 99 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~ 99 (272) +.+++.+....+..+||||||+|..+..+|+. ++..++|+|+++.+++.+.+++...++. ++.++++|+..+. ++ T Consensus 112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~~~ 190 (390) T PRK14121 112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELLPS 190 (390) T ss_pred HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhCCC Confidence 35666666667789999999999999999998 7889999999999999999999998885 7999999987642 56 Q ss_pred CCccEEEEechhhccChhh----HHHHHHHHHhcCccCcEEEEEe Q 024096 100 NKYDRIISCGMIEHVGHDY----MEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~----~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +++|.|++.....|...+. ...+++++.++|+|||.+.+.+ T Consensus 191 ~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390) T PRK14121 191 NSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390) T ss_pred CceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE Confidence 8999999977655431111 1579999999999999999853 No 96 >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] Probab=99.54 E-value=1.4e-13 Score=115.50 Aligned_cols=129 Identities=22% Similarity=0.363 Sum_probs=101.1 Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC Q 024096 4 SCAIFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGL 82 (272) Q Consensus 4 ~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~ 82 (272) ..|+|+.+..+.. .+.+++.++...+.+|||+|||.|.++..+++. +..+++.+|+|...++.+++++..+++ T Consensus 134 ~pGVFS~~~lD~G------S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~ 207 (300) T COG2813 134 LPGVFSRDKLDKG------SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGV 207 (300) T ss_pred CCCCCcCCCcChH------HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCC Confidence 3456655443322 245778888777779999999999999999999 788999999999999999999999987 Q ss_pred CCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHH----HHHHHHHhcCccCcEEEEEee Q 024096 83 QDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYME----EFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 83 ~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~----~~l~~~~~~LkpgG~l~i~~~ 141 (272) + +..++..|..+-..+ +||+|+|+..||- +.+-.. ++++...+.|++||.|.+..- T Consensus 208 ~-~~~v~~s~~~~~v~~-kfd~IisNPPfh~-G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300) T COG2813 208 E-NTEVWASNLYEPVEG-KFDLIISNPPFHA-GKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300) T ss_pred C-ccEEEEecccccccc-cccEEEeCCCccC-CcchhHHHHHHHHHHHHHhhccCCEEEEEEc Confidence 5 336777775544333 9999999999873 323233 899999999999999998533 No 97 >TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. Probab=99.54 E-value=2.4e-13 Score=116.44 Aligned_cols=106 Identities=19% Similarity=0.311 Sum_probs=86.8 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech-- Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM-- 110 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~-- 110 (272) +..+|||+|||+|.++..++.. ++.+++++|+|+.+++.+++++..+++.+++.++++|+.+..+..+||+|+++.. T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi 193 (284) T TIGR00536 114 PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYI 193 (284) T ss_pred CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCC Confidence 3369999999999999999987 6689999999999999999999998886679999999876434448999999732 Q ss_pred -----------hhccCh----------hhHHHHHHHHHhcCccCcEEEEE Q 024096 111 -----------IEHVGH----------DYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 111 -----------~~~~~~----------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..|-|. +....+++++.+.|+|||++++. T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e 243 (284) T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCE 243 (284) T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEE Confidence 222211 24567899999999999999884 No 98 >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... Probab=99.54 E-value=1.7e-13 Score=114.66 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=96.9 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCc Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKY 102 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~f 102 (272) ..+.+..+..+..+|+|||+|.|.++..++++ |+.+++.+|+ |..++.+++ .++++++.+|+. -+.+. + T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~-~ 159 (241) T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPV-A 159 (241) T ss_dssp HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSS-E T ss_pred hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcc-c Confidence 55667778888889999999999999999998 9999999998 888888887 369999999997 33224 9 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccC--cEEEEEeecCCCCc Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATH--GLLVLQFISAPDQC 147 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~i~~~~~~~~~ 147 (272) |+|+...++|++++++...+|+++++.|+|| |+|+|.+...++.. T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241) T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241) T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSS T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCC Confidence 9999999999999999999999999999999 99999998876653 No 99 >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional Probab=99.54 E-value=2.1e-13 Score=117.59 Aligned_cols=105 Identities=24% Similarity=0.377 Sum_probs=86.3 Q ss_pred CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh-- Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI-- 111 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~-- 111 (272) +.+|||+|||+|.++..++.. ++.+++++|+|+.+++.|+++++.+++.++++++++|+.+..++++||+|+++... T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307) T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307) T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC Confidence 368999999999999999987 67899999999999999999999988877899999998653344689999997422 Q ss_pred -----------hccC----------hhhHHHHHHHHHhcCccCcEEEEE Q 024096 112 -----------EHVG----------HDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 112 -----------~~~~----------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .|-| .+....+++++.+.|+|||++++. T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307) T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307) T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE Confidence 1111 123467899999999999999984 No 100 >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional Probab=99.52 E-value=8.6e-13 Score=112.55 Aligned_cols=116 Identities=23% Similarity=0.367 Sum_probs=90.1 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272) ++.++..+...++.+|||+|||+|.++..++.. +..+++++|+|+.+++.+++++. .....++.++++|+.+....++ T Consensus 97 ~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~ 175 (275) T PRK09328 97 VEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGR 175 (275) T ss_pred HHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCc Confidence 344444555667889999999999999999988 67899999999999999999987 3334589999999865434578 Q ss_pred ccEEEEechhhc------cC------------------hhhHHHHHHHHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEH------VG------------------HDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~------~~------------------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ||+|+++....- +. .+....+++++.++|+|||++++. T Consensus 176 fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275) T PRK09328 176 FDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275) T ss_pred eeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE Confidence 999999653211 10 123467888999999999999983 No 101 >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. Probab=99.52 E-value=1.9e-13 Score=109.65 Aligned_cols=165 Identities=17% Similarity=0.209 Sum_probs=109.1 Q ss_pred HHHHHHHHHHHHHHHcCCC------CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE Q 024096 15 LEVGQMRKVSVLIEKARVS------KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRF 88 (272) Q Consensus 15 l~~aq~~~~~~l~~~l~~~------~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~ 88 (272) +......--+..+.++... ...+.||.|+|.|..+..+....-.+|..+|+.+..++.|++.+.... .....+ T Consensus 30 is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~ 108 (218) T PF05891_consen 30 ISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEF 108 (218) T ss_dssp GHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEE T ss_pred CChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceE Confidence 3444444455666665543 357999999999999987766545699999999999999998765421 234678 Q ss_pred EEcccCCCCC-CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCC Q 024096 89 YLCDYRQLPK-ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGC 167 (272) Q Consensus 89 ~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 167 (272) ++..+++..| +.+||+||+.+++.|++|+++..+|++|...|+|+|.+++-+-...... ..+....+- . T Consensus 109 ~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~-~~~D~~DsS---------v 178 (218) T PF05891_consen 109 YCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF-DEFDEEDSS---------V 178 (218) T ss_dssp EES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE-EEEETTTTE---------E T ss_pred EecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC-cccCCccCe---------e Confidence 8898998875 4799999999999999999999999999999999999999766644331 111111111 1 Q ss_pred CCCHHHHHHHhhcCCCcEEEEEEe Q 024096 168 LPSLGRVTSAMTSSSGLCVEHLEN 191 (272) Q Consensus 168 ~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272) ..+...+ ..+.+++|++++..+. T Consensus 179 TRs~~~~-~~lF~~AGl~~v~~~~ 201 (218) T PF05891_consen 179 TRSDEHF-RELFKQAGLRLVKEEK 201 (218) T ss_dssp EEEHHHH-HHHHHHCT-EEEEEEE T ss_pred ecCHHHH-HHHHHHcCCEEEEecc Confidence 1233334 4677789999887554 No 102 >PTZ00146 fibrillarin; Provisional Probab=99.52 E-value=8.2e-13 Score=111.42 Aligned_cols=105 Identities=14% Similarity=0.087 Sum_probs=80.9 Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCC Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANK 101 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~ 101 (272) +.+.+.++++|||+|||+|.++..+++.. ..+|+++|+++.+.+...+.+... .++.++.+|+.... ..++ T Consensus 126 ~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~ 202 (293) T PTZ00146 126 ANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPM 202 (293) T ss_pred ceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCC Confidence 45668899999999999999999999983 468999999988665555544332 47899999986421 3468 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +|+|++... .+ ++...++.++.++|||||++++. T Consensus 203 vDvV~~Dva---~p-dq~~il~~na~r~LKpGG~~vI~ 236 (293) T PTZ00146 203 VDVIFADVA---QP-DQARIVALNAQYFLKNGGHFIIS 236 (293) T ss_pred CCEEEEeCC---Cc-chHHHHHHHHHHhccCCCEEEEE Confidence 999999764 12 33456777899999999999983 No 103 >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional Probab=99.51 E-value=1.6e-13 Score=116.83 Aligned_cols=94 Identities=21% Similarity=0.343 Sum_probs=77.2 Q ss_pred CCCCEEEEECCCchHHHHHHHHc-c---CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEE Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-T---GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIIS 107 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~---~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~ 107 (272) .++.+|||+|||+|.++..+++. + +.+++|+|+|+.+++.|+++. .++.+.++|+.++| ++++||+|++ T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~ 157 (272) T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR 157 (272) T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE Confidence 45578999999999999998875 3 247999999999999997652 36889999999988 6789999998 Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ... +..++++.++|||||++++..+ T Consensus 158 ~~~---------~~~~~e~~rvLkpgG~li~~~p 182 (272) T PRK11088 158 IYA---------PCKAEELARVVKPGGIVITVTP 182 (272) T ss_pred ecC---------CCCHHHHHhhccCCCEEEEEeC Confidence 643 1345788999999999998643 No 104 >PRK10901 16S rRNA methyltransferase B; Provisional Probab=99.51 E-value=7.7e-13 Score=119.47 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=95.4 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-- Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272) .....+...++..++.+|||+|||+|..+..+++. .+.+|+++|+++.+++.++++++..|+ ++.++++|+.+.+ T Consensus 231 ~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~ 308 (427) T PRK10901 231 AAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQW 308 (427) T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhh Confidence 33345566778889999999999999999999987 447999999999999999999999886 3789999998764 Q ss_pred -CCCCccEEEEechhhcc-------------Ch-------hhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 98 -KANKYDRIISCGMIEHV-------------GH-------DYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 98 -~~~~fD~V~~~~~~~~~-------------~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) ..++||.|++....... .. +....+++.+.+.|||||++++++.+. T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427) T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427) T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC Confidence 24689999975432110 11 113478999999999999999987653 No 105 >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional Probab=99.51 E-value=9.4e-13 Score=116.17 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=87.1 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CC Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KA 99 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~ 99 (272) ++.+++.+ .++.+|||+|||+|.++..+++. ++++++++|+|+.+++.++++++.++. ++.++++|+.+.. .. T Consensus 242 Ve~aL~~l--~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~ 317 (423) T PRK14966 242 VEAVLARL--PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSE 317 (423) T ss_pred HHHhhhcc--CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccC Confidence 34444443 35679999999999999999876 788999999999999999999988764 7999999986543 34 Q ss_pred CCccEEEEechhhccC-----------------------hhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEHVG-----------------------HDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ++||+|+++.....-. .+....+++.+.+.|+|||.+++. T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423) T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423) T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE Confidence 5899999987431110 012346777888999999998873 No 106 >PRK13256 thiopurine S-methyltransferase; Reviewed Probab=99.51 E-value=1.1e-12 Score=107.38 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=95.4 Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-----------cCCCCCeEEEEcccCC Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE-----------AGLQDHIRFYLCDYRQ 95 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~-----------~g~~~~i~~~~~d~~~ 95 (272) +..+...++.+||..|||.|..+.+|++. |.+|+|+|+|+..++.+.+.... .--..+++++++|+.+ T Consensus 36 ~~~l~~~~~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~ 114 (226) T PRK13256 36 FSKLNINDSSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN 114 (226) T ss_pred HHhcCCCCCCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC Confidence 45556567789999999999999999997 88999999999999987552100 0012478999999999 Q ss_pred CCC----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 96 LPK----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 96 ~~~----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) +++ .++||+|+-..++++++++...++.+.+.++|+|||.+++..+. T Consensus 115 l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226) T PRK13256 115 LPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226) T ss_pred CCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe Confidence 862 25899999999999999988999999999999999999886554 No 107 >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed Probab=99.50 E-value=1.1e-12 Score=120.44 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=85.6 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272) ++.+|||+|||+|.++..++.. ++.+++++|+|+.+++.|++++..+++.+++.++++|+.+..+.++||+|+++.... T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi 217 (506) T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI 217 (506) T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC Confidence 3568999999999999999877 778999999999999999999998888778999999976533446899999975321 Q ss_pred --------------ccC----------hhhHHHHHHHHHhcCccCcEEEEE Q 024096 113 --------------HVG----------HDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 113 --------------~~~----------~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) |-| -+....+++++.++|+|||.+++. T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506) T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506) T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE Confidence 111 023455788889999999999874 No 108 >TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases Probab=99.49 E-value=5.8e-13 Score=114.90 Aligned_cols=114 Identities=16% Similarity=0.204 Sum_probs=88.7 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-CC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P-KA 99 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~-~~ 99 (272) +.+.+.+ .++.+|||+|||+|..+..+++. . +.+++++|+|+.+++.+++++.......++.++++|+.+. + .. T Consensus 55 ~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~ 132 (301) T TIGR03438 55 DEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP 132 (301) T ss_pred HHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc Confidence 3344444 46689999999999999999987 3 6899999999999999999887643223577899998763 3 21 Q ss_pred C----CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 N----KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~----~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) . ...++++..++.+++.++...+++++++.|+|||.+++. T Consensus 133 ~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301) T TIGR03438 133 EPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301) T ss_pred ccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe Confidence 1 233455556788888888889999999999999999984 No 109 >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional Probab=99.49 E-value=4.2e-13 Score=109.64 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=83.4 Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC- Q 024096 22 KVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272) Q Consensus 22 ~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272) ++..+.+++. ++++.+|||+|||+|.++..+++. ...+|+++|+++. ... .++.++++|+.+.+ T Consensus 38 kl~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~ 105 (209) T PRK11188 38 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELV 105 (209) T ss_pred hhHHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHH Confidence 4455666666 578899999999999999999987 3469999999881 122 36899999998842 Q ss_pred --------CCCCccEEEEechhhccChhh---------HHHHHHHHHhcCccCcEEEEEeec Q 024096 98 --------KANKYDRIISCGMIEHVGHDY---------MEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 98 --------~~~~fD~V~~~~~~~~~~~~~---------~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) .+++||+|++..+.++.+... ...+++++.++|+|||.+++..+. T Consensus 106 ~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209) T PRK11188 106 LKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209) T ss_pred HHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec Confidence 357899999977655543211 146899999999999999996544 No 110 >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional Probab=99.49 E-value=5e-13 Score=115.45 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=91.7 Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272) Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272) -..+..+++.++++++.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|+++++..+. +++.++++|..+.. T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~ 144 (322) T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGV 144 (322) T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcc Confidence 34556788888888999999999999999999998732 4799999999999999999998887 47999999987665 Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ...+||+|++...+.+++ ..+.+.|+|||++++.. T Consensus 145 ~~~~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322) T PRK13943 145 PEFAPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322) T ss_pred cccCCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe Confidence 446799999976655442 23567899999998743 No 111 >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] Probab=99.49 E-value=7.4e-13 Score=108.11 Aligned_cols=109 Identities=21% Similarity=0.283 Sum_probs=98.4 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272) ..++..+++.+|++|||.|.|+|.++..|+.. +..+|+.+|+.+...+.|++|++..++.+++.+..+|+.+...++. T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~ 163 (256) T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEED 163 (256) T ss_pred HHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccc Confidence 46788899999999999999999999999986 5579999999999999999999999998889999999998885569 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ||+|+.. + .++-.+++++.+.|+|||.+++- T Consensus 164 vDav~LD-----m--p~PW~~le~~~~~Lkpgg~~~~y 194 (256) T COG2519 164 VDAVFLD-----L--PDPWNVLEHVSDALKPGGVVVVY 194 (256) T ss_pred cCEEEEc-----C--CChHHHHHHHHHHhCCCcEEEEE Confidence 9999974 4 45689999999999999999973 No 112 >PRK14903 16S rRNA methyltransferase B; Provisional Probab=99.48 E-value=1.3e-12 Score=117.80 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=95.5 Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272) Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272) .+...++..+|.+|||+|||+|+.+..+++. .+.+|+++|+++.+++.++++++..|+. ++++.++|...++ ..+ T Consensus 228 ~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~ 306 (431) T PRK14903 228 IVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQD 306 (431) T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhc Confidence 3445567889999999999999999999987 3579999999999999999999999885 6999999998776 356 Q ss_pred CccEEEEechhhcc------C-------h-------hhHHHHHHHHHhcCccCcEEEEEeecCC Q 024096 101 KYDRIISCGMIEHV------G-------H-------DYMEEFFGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 101 ~fD~V~~~~~~~~~------~-------~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272) +||.|++....... + . +...++++++.+.|||||.+++++.+.. T Consensus 307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431) T PRK14903 307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431) T ss_pred cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC Confidence 89999975322111 1 1 1235679999999999999999877643 No 113 >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. Probab=99.48 E-value=9e-13 Score=109.34 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=89.1 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--- Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272) +..++..+++.||++|||.|+|+|.++..|++. +..+|+.+|+.++..+.|+++++..|+.+++.+.+.|+.+.. T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247) T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247) T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc Confidence 367889999999999999999999999999987 668999999999999999999999999889999999986432 Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcC-ccCcEEEE Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLL-ATHGLLVL 138 (272) Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i 138 (272) .+..+|.|+.. + .++-..+..+.+.| ||||++++ T Consensus 109 ~~~~~~DavfLD-----l--p~Pw~~i~~~~~~L~~~gG~i~~ 144 (247) T PF08704_consen 109 ELESDFDAVFLD-----L--PDPWEAIPHAKRALKKPGGRICC 144 (247) T ss_dssp T-TTSEEEEEEE-----S--SSGGGGHHHHHHHE-EEEEEEEE T ss_pred cccCcccEEEEe-----C--CCHHHHHHHHHHHHhcCCceEEE Confidence 23689999985 3 23467888999999 89999987 No 114 >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. Probab=99.47 E-value=8.5e-13 Score=119.21 Aligned_cols=126 Identities=19% Similarity=0.187 Sum_probs=97.8 Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC- Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272) Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272) ......+...++..++.+|||+|||+|+.+..+++. ++.+++++|+++.+++.++++++..|+...+.+..+|....+ T Consensus 224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426) T TIGR00563 224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426) T ss_pred CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc Confidence 333455667778889999999999999999999987 457999999999999999999999887533445777766544 Q ss_pred --CCCCccEEEEe------chhhccCh--------------hhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 98 --KANKYDRIISC------GMIEHVGH--------------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 98 --~~~~fD~V~~~------~~~~~~~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) ..++||.|++. +++.+.++ +....+++++.++|||||++++++.+... T Consensus 304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~ 373 (426) T TIGR00563 304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP 373 (426) T ss_pred cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh Confidence 35689999974 33443332 11367999999999999999998877543 No 115 >PRK14901 16S rRNA methyltransferase B; Provisional Probab=99.47 E-value=1.7e-12 Score=117.44 Aligned_cols=120 Identities=19% Similarity=0.230 Sum_probs=96.8 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--- Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272) ...+...+...+|.+|||+|||+|+.+..+++. ...+|+++|+++.+++.++++++..|+. ++.++++|+.+.+ T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~ 319 (434) T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELK 319 (434) T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhccccc Confidence 344556677889999999999999999999987 2469999999999999999999999985 6999999998765 Q ss_pred --CCCCccEEEEec------hhhccCh-------h-------hHHHHHHHHHhcCccCcEEEEEeecC Q 024096 98 --KANKYDRIISCG------MIEHVGH-------D-------YMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 98 --~~~~fD~V~~~~------~~~~~~~-------~-------~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) ..++||.|++.. ++.+-++ + ....+++++.+.|||||+++.++.+. T Consensus 320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434) T PRK14901 320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434) T ss_pred ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC Confidence 136899999753 3333322 1 14678999999999999999887664 No 116 >PLN02232 ubiquinone biosynthesis methyltransferase Probab=99.47 E-value=3.3e-13 Score=105.76 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=71.6 Q ss_pred EEEcCCHHHHHHHHHHHHHc--CCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE Q 024096 61 TGITLSEEQLKYAEIKVREA--GLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 61 ~gvd~s~~~~~~a~~~~~~~--g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) +|+|+|+.|++.|+++.+.. +...+++++++|+.++| ++++||+|++..+++++ .++..++++++++|||||.++ T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~--~d~~~~l~ei~rvLkpGG~l~ 78 (160) T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV--VDRLRAMKEMYRVLKPGSRVS 78 (160) T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC--CCHHHHHHHHHHHcCcCeEEE Confidence 58999999999998776532 22347999999999999 67799999999999999 466899999999999999999 Q ss_pred EEeecCCCC Q 024096 138 LQFISAPDQ 146 (272) Q Consensus 138 i~~~~~~~~ 146 (272) +.++..++. T Consensus 79 i~d~~~~~~ 87 (160) T PLN02232 79 ILDFNKSNQ 87 (160) T ss_pred EEECCCCCh Confidence 988876543 No 117 >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. Probab=99.47 E-value=8.5e-13 Score=108.15 Aligned_cols=152 Identities=23% Similarity=0.294 Sum_probs=109.1 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-c------C----CCCCeEEEEc Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE-A------G----LQDHIRFYLC 91 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~-~------g----~~~~i~~~~~ 91 (272) +..+++.+...++.+||..|||.|..+.+|+++ |.+|+|+|+|+..++.+.+.... . + -.++|+++++ T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 104 (218) T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCG 104 (218) T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEc Confidence 445556677788889999999999999999997 88999999999999998443221 0 0 1236899999 Q ss_pred ccCCCCCC--CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCC Q 024096 92 DYRQLPKA--NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLP 169 (272) Q Consensus 92 d~~~~~~~--~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (272) |+.++++. ++||+|+=..+++.++.+.+..+.+.+.++|+|||.+++.....+..... -.|. .. T Consensus 105 DfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~------------GPPf--~v 170 (218) T PF05724_consen 105 DFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEME------------GPPF--SV 170 (218) T ss_dssp -TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSS------------SSS----- T ss_pred ccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCC------------CcCC--CC Confidence 99998833 57999999999999999999999999999999999966554443221100 0010 12 Q ss_pred CHHHHHHHhhcCCCcEEEEEEe Q 024096 170 SLGRVTSAMTSSSGLCVEHLEN 191 (272) Q Consensus 170 ~~~~~~~~l~~~~Gf~v~~~~~ 191 (272) +.+++. .+.. .+|++..++. T Consensus 171 ~~~ev~-~l~~-~~f~i~~l~~ 190 (218) T PF05724_consen 171 TEEEVR-ELFG-PGFEIEELEE 190 (218) T ss_dssp -HHHHH-HHHT-TTEEEEEEEE T ss_pred CHHHHH-HHhc-CCcEEEEEec Confidence 344554 5564 8999888776 No 118 >PRK14904 16S rRNA methyltransferase B; Provisional Probab=99.46 E-value=1.5e-12 Score=118.18 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=94.1 Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272) Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272) ....+...+|.+|||+|||+|+.+..+++. .+.+|+++|+++.+++.++++++..|+. +++++++|+.+.+++++|| T Consensus 242 ~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD 320 (445) T PRK14904 242 ACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPD 320 (445) T ss_pred HHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCC Confidence 445567778999999999999999998876 3469999999999999999999999884 7999999998877667899 Q ss_pred EEEEec------hhh-------ccChh-------hHHHHHHHHHhcCccCcEEEEEeecC Q 024096 104 RIISCG------MIE-------HVGHD-------YMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 104 ~V~~~~------~~~-------~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) +|++.. ++. +...+ ....++.++.+.|||||++++++.+. T Consensus 321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445) T PRK14904 321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445) T ss_pred EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC Confidence 999742 111 11111 23468999999999999999987764 No 119 >PRK14902 16S rRNA methyltransferase B; Provisional Probab=99.45 E-value=3e-12 Score=116.31 Aligned_cols=118 Identities=21% Similarity=0.259 Sum_probs=94.3 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KA 99 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~ 99 (272) ..+...+...++.+|||+|||+|..+..+++. ++.+++++|+++.+++.++++++..|+. ++.++++|+.+.. .. T Consensus 240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~ 318 (444) T PRK14902 240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA 318 (444) T ss_pred HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc Confidence 34555677788999999999999999999986 3579999999999999999999999985 5999999998764 23 Q ss_pred CCccEEEEechhh------ccCh-------h-------hHHHHHHHHHhcCccCcEEEEEeec Q 024096 100 NKYDRIISCGMIE------HVGH-------D-------YMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 100 ~~fD~V~~~~~~~------~~~~-------~-------~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) ++||+|++..... +.|+ . ....+++++.++|||||+++.++.+ T Consensus 319 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444) T PRK14902 319 EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444) T ss_pred ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC Confidence 6899999864321 1110 1 1246899999999999999987655 No 120 >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase. Probab=99.45 E-value=2.1e-12 Score=109.38 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=92.6 Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCcc Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYD 103 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD 103 (272) ...++..++.+|||+|||+|+.+..+++.. ..+|+++|+++.+++.++++++..++. ++.+++.|...++ ..+.|| T Consensus 64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD 142 (264) T TIGR00446 64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFD 142 (264) T ss_pred HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCC Confidence 345677899999999999999999998862 469999999999999999999999884 6999999988766 446799 Q ss_pred EEEEechhh------cc-------Ch-------hhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 104 RIISCGMIE------HV-------GH-------DYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 104 ~V~~~~~~~------~~-------~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) .|++..... +- .. +....+++++.++|||||+++.++.+. T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264) T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264) T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC Confidence 999753221 11 11 123569999999999999999887664 No 121 >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown. Probab=99.45 E-value=2.9e-12 Score=102.29 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=116.4 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C------CCCcc Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---K------ANKYD 103 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~------~~~fD 103 (272) .+.+|||||||+|.-+.++++. +..+..-.|.++....-.+..+...++++-..-+..|+.+.+ . .++|| T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D 104 (204) T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFD 104 (204) T ss_pred cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcc Confidence 3336999999999999999999 889999999999998888888888777644456677776653 1 35899 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccc--cCcchhhhhcccCCCCCCCHHHHHHHhhcC Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY--RLSPGFIKEYIFPGGCLPSLGRVTSAMTSS 181 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 181 (272) .|++.+++|-++.+....+++.+.++|++||.|++--+...+..+... ......++.. .|..-+...+++. .++++ T Consensus 105 ~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~r-dp~~GiRD~e~v~-~lA~~ 182 (204) T PF06080_consen 105 AIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSR-DPEWGIRDIEDVE-ALAAA 182 (204) T ss_pred eeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcC-CCCcCccCHHHHH-HHHHH Confidence 999999999999888899999999999999999984333222211100 1111222221 3444566777765 67778 Q ss_pred CCcEEEEEEecCc Q 024096 182 SGLCVEHLENIGI 194 (272) Q Consensus 182 ~Gf~v~~~~~~~~ 194 (272) +|+...+..++.. T Consensus 183 ~GL~l~~~~~MPA 195 (204) T PF06080_consen 183 HGLELEEDIDMPA 195 (204) T ss_pred CCCccCcccccCC Confidence 9999887766643 No 122 >PLN02781 Probable caffeoyl-CoA O-methyltransferase Probab=99.44 E-value=1.5e-12 Score=108.25 Aligned_cols=106 Identities=15% Similarity=0.181 Sum_probs=88.8 Q ss_pred CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCc Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKY 102 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~f 102 (272) ..++.+|||+|||+|..+..++.. .+.+++++|++++.++.|+++++.+|+.++++++.+|+.+.. +.++| T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234) T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234) T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC Confidence 446789999999999999988876 357999999999999999999999999889999999987642 14689 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) |+|++... ......+++.+.+.|+|||.+++.... T Consensus 146 D~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn~l 180 (234) T PLN02781 146 DFAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDNTL 180 (234) T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEcCC Confidence 99998532 234568899999999999999886544 No 123 >PHA03411 putative methyltransferase; Provisional Probab=99.44 E-value=1.9e-12 Score=108.07 Aligned_cols=101 Identities=16% Similarity=0.213 Sum_probs=81.9 Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272) .++.+|||+|||+|.++..++.+ .+.+++++|+++.+++.++++. +++.++++|+.+...+.+||+|+++..+ T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~~~kFDlIIsNPPF 136 (279) T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFESNEKFDVVISNPPF 136 (279) T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcccCCCcEEEEcCCc Confidence 34579999999999999988876 4679999999999999998763 3689999999887755789999999999 Q ss_pred hccChhh------------------HHHHHHHHHhcCccCcEEEEE Q 024096 112 EHVGHDY------------------MEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 112 ~~~~~~~------------------~~~~l~~~~~~LkpgG~l~i~ 139 (272) .|.+..+ ...+++....+|+|+|.+.+. T Consensus 137 ~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279) T PHA03411 137 GKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279) T ss_pred cccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE Confidence 8864432 235667778889999977663 No 124 >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] Probab=99.44 E-value=1.1e-12 Score=104.23 Aligned_cols=123 Identities=26% Similarity=0.404 Sum_probs=98.9 Q ss_pred CCHHHHHHHHHHHHHHHcCCCC--CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE Q 024096 13 EDLEVGQMRKVSVLIEKARVSK--GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272) Q Consensus 13 ~~l~~aq~~~~~~l~~~l~~~~--~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272) ..+-..|.++....++.+.++. +.-|||||||+|..+..+.+. |..++|+|+|+.|++.|.+.--+ -.++. T Consensus 27 sri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e------gdlil 99 (270) T KOG1541|consen 27 SRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE------GDLIL 99 (270) T ss_pred ceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh------cCeee Confidence 3455788888889999888776 789999999999999988875 78999999999999999873211 25677 Q ss_pred cccCC-CC-CCCCccEEEEechhhcc---------ChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 91 CDYRQ-LP-KANKYDRIISCGMIEHV---------GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 91 ~d~~~-~~-~~~~fD~V~~~~~~~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) +|+-+ +| .++.||.+++..++.++ |.+.+..|+..++..|++|++.+++-+. T Consensus 100 ~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270) T KOG1541|consen 100 CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270) T ss_pred eecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc Confidence 78644 55 67899999999887655 4445567899999999999999997554 No 125 >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. Probab=99.44 E-value=6.9e-12 Score=105.31 Aligned_cols=112 Identities=17% Similarity=0.198 Sum_probs=84.5 Q ss_pred HHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---K 98 (272) Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~ 98 (272) +.++..+. ..++.+|||+|||+|.++..+++. ++.+++++|+|+.+++.+++++..++ ++++++|+.+.. . T Consensus 75 ~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~ 150 (251) T TIGR03704 75 DEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL 150 (251) T ss_pred HHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc Confidence 44444443 223468999999999999999887 67799999999999999999998764 478999986532 1 Q ss_pred CCCccEEEEechhh------ccCh------------------hhHHHHHHHHHhcCccCcEEEEE Q 024096 99 ANKYDRIISCGMIE------HVGH------------------DYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~------~~~~------------------~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .++||+|+++.... .+++ +....+++.+.++|+|||++++. T Consensus 151 ~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251) T TIGR03704 151 RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251) T ss_pred CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE Confidence 35799999986432 1111 11357888888999999999984 No 126 >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] Probab=99.43 E-value=8e-12 Score=106.32 Aligned_cols=101 Identities=24% Similarity=0.413 Sum_probs=82.1 Q ss_pred EEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc-- Q 024096 37 EVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH-- 113 (272) Q Consensus 37 ~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~-- 113 (272) +|||+|||+|.++..++.+ +.++|+|+|+|+..++.|++|+..+++ .++.++.+|+.+.-. ++||+|+++...-- T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~-~~fDlIVsNPPYip~~ 190 (280) T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLR-GKFDLIVSNPPYIPAE 190 (280) T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccC-CceeEEEeCCCCCCCc Confidence 8999999999999999998 667999999999999999999999998 577777777554332 49999999963211 Q ss_pred ---c------------------ChhhHHHHHHHHHhcCccCcEEEEE Q 024096 114 ---V------------------GHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 114 ---~------------------~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) . +.+....++.++.+.|+|||.+++. T Consensus 191 ~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280) T COG2890 191 DPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280) T ss_pred ccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE Confidence 1 1134466888899999999999884 No 127 >smart00650 rADc Ribosomal RNA adenine dimethylases. Probab=99.43 E-value=3.4e-12 Score=101.03 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=85.5 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272) ++.+++.+++.++.+|||+|||+|.++..++++ +.+++++|+++.+++.+++++... ++++++++|+.+.+ ++.. T Consensus 2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~ 77 (169) T smart00650 2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQ 77 (169) T ss_pred HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccC Confidence 356888888889999999999999999999997 789999999999999999887542 48999999999987 4456 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ||.|+++...+ +..+....+++. ..+.++|.++++ T Consensus 78 ~d~vi~n~Py~-~~~~~i~~~l~~--~~~~~~~~l~~q 112 (169) T smart00650 78 PYKVVGNLPYN-ISTPILFKLLEE--PPAFRDAVLMVQ 112 (169) T ss_pred CCEEEECCCcc-cHHHHHHHHHhc--CCCcceEEEEEE Confidence 99999976654 322323333332 124578888775 No 128 >PRK04457 spermidine synthase; Provisional Probab=99.43 E-value=1.6e-12 Score=109.76 Aligned_cols=110 Identities=21% Similarity=0.292 Sum_probs=86.3 Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEec Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCG 109 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~ 109 (272) .++.+|||||||.|.++..+++. ++.+++++|+++.+++.|++++...+..++++++++|+.+.- ..++||+|++.. T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262) T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262) T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC Confidence 45679999999999999999887 788999999999999999998765544468999999986543 346899999863 Q ss_pred hh-hccCh-hhHHHHHHHHHhcCccCcEEEEEeec Q 024096 110 MI-EHVGH-DYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 110 ~~-~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) .- ..++. -....+++++.+.|+|||++++..+. T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262) T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262) T ss_pred CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC Confidence 11 11111 11268999999999999999985443 No 129 >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed Probab=99.40 E-value=1.1e-11 Score=112.59 Aligned_cols=113 Identities=19% Similarity=0.331 Sum_probs=90.8 Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-- Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272) Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272) ...++.+++.+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++..+++. +++++++|+.+.. T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~ 360 (443) T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTD 360 (443) T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhh Confidence 345677778888788899999999999999999986 579999999999999999999988874 7999999986532 Q ss_pred ---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 98 ---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 98 ---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) .+++||+|+++..-.-. ...++.+.+ ++|++.++++. T Consensus 361 ~~~~~~~fD~Vi~dPPr~g~-----~~~~~~l~~-~~~~~ivyvSC 400 (443) T PRK13168 361 QPWALGGFDKVLLDPPRAGA-----AEVMQALAK-LGPKRIVYVSC 400 (443) T ss_pred hhhhcCCCCEEEECcCCcCh-----HHHHHHHHh-cCCCeEEEEEe Confidence 24679999997654332 345555555 68999998864 No 130 >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Probab=99.39 E-value=5.4e-12 Score=90.29 Aligned_cols=101 Identities=31% Similarity=0.510 Sum_probs=84.9 Q ss_pred EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechhhcc Q 024096 37 EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMIEHV 114 (272) Q Consensus 37 ~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~ 114 (272) +|+|+|||.|..+..+++....+++++|+++..++.+++.....+ ..++.++.+|+.+.. ..++||+|++..+++++ T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107) T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107) T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccccCCceEEEEEccceeeh Confidence 589999999999999887556799999999999999986443333 357899999988876 45789999999999884 Q ss_pred ChhhHHHHHHHHHhcCccCcEEEEE Q 024096 115 GHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+....+++.+.+.|+|||.+++. T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107) T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107) T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE Confidence 256789999999999999999875 No 131 >COG4122 Predicted O-methyltransferase [General function prediction only] Probab=99.37 E-value=1e-11 Score=100.72 Aligned_cols=110 Identities=24% Similarity=0.302 Sum_probs=92.8 Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-cccCCCC---CCCCccE Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL-CDYRQLP---KANKYDR 104 (272) Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~-~d~~~~~---~~~~fD~ 104 (272) ...++.+|||||++.|..+.+++.. + +.+++.+|++++..+.|++++++.|+.+++..+. +|..+.- ..++||+ T Consensus 56 ~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219) T COG4122 56 RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219) T ss_pred HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE Confidence 3457789999999999999999998 5 6799999999999999999999999988899988 5765544 3589999 Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) |+... ...+.+.+++.+.++|+|||.+++.....+. T Consensus 136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219) T COG4122 136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219) T ss_pred EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC Confidence 99852 2345689999999999999999987666543 No 132 >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional Probab=99.36 E-value=1.3e-11 Score=117.65 Aligned_cols=107 Identities=19% Similarity=0.156 Sum_probs=86.7 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC--CCCCccEEEEech Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP--KANKYDRIISCGM 110 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~--~~~~fD~V~~~~~ 110 (272) ++.+|||+|||+|.++..+++....+|+++|+|+.+++.+++++..+++. ++++++++|+.+.. ..++||+|++... T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702) T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702) T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC Confidence 57899999999999999999863347999999999999999999999985 58999999986643 2468999999754 Q ss_pred hhcc---------ChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 111 IEHV---------GHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 111 ~~~~---------~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ..-- ..++...++..+.++|+|||.+++.. T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702) T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702) T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe Confidence 2110 11345678889999999999998753 No 133 >PRK00811 spermidine synthase; Provisional Probab=99.36 E-value=6.8e-12 Score=107.21 Aligned_cols=107 Identities=22% Similarity=0.304 Sum_probs=84.4 Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C--CCCeEEEEcccCCCC--CCCCccEE Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--L--QDHIRFYLCDYRQLP--KANKYDRI 105 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~--~~~i~~~~~d~~~~~--~~~~fD~V 105 (272) ..+.+||+||||.|..+..++++ ...+|+++|+++.+++.+++.+...+ . .++++++.+|..+.- ..++||+| T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283) T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283) T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE Confidence 45679999999999999999887 44689999999999999999886431 1 458999999987654 45789999 Q ss_pred EEechhhccChh--hHHHHHHHHHhcCccCcEEEEE Q 024096 106 ISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 106 ~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ++...-.+.+.. ...++++.+.+.|+|||.+++. T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283) T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283) T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe Confidence 996533322211 1267899999999999999875 No 134 >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... Probab=99.35 E-value=2.7e-11 Score=98.22 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=98.1 Q ss_pred CHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc Q 024096 14 DLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC 91 (272) Q Consensus 14 ~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~ 91 (272) .+...+-..+..+++.. ...+||||||++|..+.++++. .+.+++.+|++++..+.|+++++..|+.++|+++.+ T Consensus 28 ~i~~~~g~lL~~l~~~~---~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205) T PF01596_consen 28 SISPETGQLLQMLVRLT---RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205) T ss_dssp SHHHHHHHHHHHHHHHH---T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES T ss_pred ccCHHHHHHHHHHHHhc---CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe Confidence 45556666666666654 3569999999999999999987 368999999999999999999999999889999999 Q ss_pred ccCCCC-------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 92 DYRQLP-------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 92 d~~~~~-------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) |+.+.- ..++||+|+.... ..+...+++.+.++|+|||.+++.+... T Consensus 105 da~~~l~~l~~~~~~~~fD~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l~ 158 (205) T PF01596_consen 105 DALEVLPELANDGEEGQFDFVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVLW 158 (205) T ss_dssp -HHHHHHHHHHTTTTTSEEEEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTTG T ss_pred ccHhhHHHHHhccCCCceeEEEEccc-----ccchhhHHHHHhhhccCCeEEEEccccc Confidence 987632 1358999998642 3456789999999999999999865543 No 135 >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed Probab=99.34 E-value=3.8e-11 Score=104.33 Aligned_cols=110 Identities=22% Similarity=0.307 Sum_probs=83.6 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272) ++.+.+.+...++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++.+++ ++++++++|+.+.. ..+ T Consensus 162 ~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~ 239 (315) T PRK03522 162 YATARDWVRELPPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGE 239 (315) T ss_pred HHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCC Confidence 344444444345689999999999999999985 78999999999999999999999998 58999999998764 335 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .||+|+++..-.-+. ..+++.+ ..++|++.++++ T Consensus 240 ~~D~Vv~dPPr~G~~----~~~~~~l-~~~~~~~ivyvs 273 (315) T PRK03522 240 VPDLVLVNPPRRGIG----KELCDYL-SQMAPRFILYSS 273 (315) T ss_pred CCeEEEECCCCCCcc----HHHHHHH-HHcCCCeEEEEE Confidence 799999986533221 2333333 336788877775 No 136 >TIGR00438 rrmJ cell division protein FtsJ. Probab=99.34 E-value=1.4e-11 Score=99.15 Aligned_cols=106 Identities=21% Similarity=0.324 Sum_probs=77.5 Q ss_pred HHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-- Q 024096 23 VSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272) Q Consensus 23 ~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272) +..+.+++. +.++.+|||+|||+|.++..+++. ...+++++|+++.+ .. .++.++++|+.+.+ T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~ 87 (188) T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVL 87 (188) T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHH Confidence 334445443 578999999999999999988876 34689999999854 12 36788999987642 Q ss_pred -------CCCCccEEEEechh--------hccC-hhhHHHHHHHHHhcCccCcEEEEEe Q 024096 98 -------KANKYDRIISCGMI--------EHVG-HDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 98 -------~~~~fD~V~~~~~~--------~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +.++||+|++..+. .|.. .+....+++++.++|+|||++++.. T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188) T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188) T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE Confidence 34689999986432 2210 1224678999999999999999853 No 137 >KOG3010 consensus Methyltransferase [General function prediction only] Probab=99.33 E-value=3.6e-12 Score=102.84 Aligned_cols=106 Identities=19% Similarity=0.185 Sum_probs=79.2 Q ss_pred CCCCC-EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec Q 024096 32 VSKGQ-EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272) Q Consensus 32 ~~~~~-~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272) ..++. .++|+|||+|..++-++.. -.+|+|+|+|+.|++.+++.....-..........+..++. .+++.|+|++.. T Consensus 30 ~~~~h~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261) T KOG3010|consen 30 RTEGHRLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261) T ss_pred hCCCcceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhh Confidence 34443 8999999999888888876 56999999999999999876433322112233333444444 578999999999 Q ss_pred hhhccChhhHHHHHHHHHhcCccCc-EEEEEee Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHG-LLVLQFI 141 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG-~l~i~~~ 141 (272) ++|++ +++.+.+++.|+||+.| .+.+..+ T Consensus 109 a~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y 138 (261) T KOG3010|consen 109 AVHWF---DLERFYKEAYRVLRKDGGLIAVWNY 138 (261) T ss_pred hHHhh---chHHHHHHHHHHcCCCCCEEEEEEc Confidence 99998 56899999999999887 5555433 No 138 >PLN02476 O-methyltransferase Probab=99.32 E-value=2.9e-11 Score=101.91 Aligned_cols=107 Identities=11% Similarity=0.134 Sum_probs=90.3 Q ss_pred CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCc Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKY 102 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~f 102 (272) ..++.+||||||++|..+.++++. .+.+++++|.+++..+.|++++++.|+.++++++.+|+.+.. ..++| T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278) T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278) T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC Confidence 345779999999999999999986 356899999999999999999999999889999999986632 13689 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) |+|+.... ......+++.+.++|+|||.+++.+... T Consensus 196 D~VFIDa~-----K~~Y~~y~e~~l~lL~~GGvIV~DNvL~ 231 (278) T PLN02476 196 DFAFVDAD-----KRMYQDYFELLLQLVRVGGVIVMDNVLW 231 (278) T ss_pred CEEEECCC-----HHHHHHHHHHHHHhcCCCcEEEEecCcc Confidence 99998632 3456889999999999999999865543 No 139 >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. Probab=99.31 E-value=5e-11 Score=97.94 Aligned_cols=144 Identities=18% Similarity=0.209 Sum_probs=96.1 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhh Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIE 112 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~ 112 (272) ...++||||+|.|..+..++.. -.+|++.|.|+.|....+++ | .+++..+ +.. .+.+||+|.|.+++. T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k----g----~~vl~~~--~w~~~~~~fDvIscLNvLD 162 (265) T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK----G----FTVLDID--DWQQTDFKFDVISCLNVLD 162 (265) T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC----C----CeEEehh--hhhccCCceEEEeehhhhh Confidence 4578999999999999999886 55899999999997666553 3 3444333 233 346899999999999 Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccC-cchhhhhcccCCCC-C-CCHHHHHHHhhcCCCcEEEEE Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRL-SPGFIKEYIFPGGC-L-PSLGRVTSAMTSSSGLCVEHL 189 (272) Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~-~-~~~~~~~~~l~~~~Gf~v~~~ 189 (272) .. .++..+++.+++.|+|+|+++++.+. |-..+-+... ....-.+.+.-.+. + ...+.+. .+.+.+||+++.+ T Consensus 163 Rc--~~P~~LL~~i~~~l~p~G~lilAvVl-P~~pyVE~~~g~~~~P~e~l~~~g~~~E~~v~~l~-~v~~p~GF~v~~~ 238 (265) T PF05219_consen 163 RC--DRPLTLLRDIRRALKPNGRLILAVVL-PFRPYVEFGGGKSNRPSELLPVKGATFEEQVSSLV-NVFEPAGFEVERW 238 (265) T ss_pred cc--CCHHHHHHHHHHHhCCCCEEEEEEEe-cccccEEcCCCCCCCchhhcCCCCCcHHHHHHHHH-HHHHhcCCEEEEE Confidence 88 66799999999999999999985433 3222222211 00001111111111 1 1133455 4567899999988 Q ss_pred Eec Q 024096 190 ENI 192 (272) Q Consensus 190 ~~~ 192 (272) ... T Consensus 239 tr~ 241 (265) T PF05219_consen 239 TRL 241 (265) T ss_pred ecc Confidence 775 No 140 >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. Probab=99.31 E-value=1.7e-11 Score=106.43 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=80.0 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcC---------CCCCeEEEEcccCCCC-----C- Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAG---------LQDHIRFYLCDYRQLP-----K- 98 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g---------~~~~i~~~~~d~~~~~-----~- 98 (272) ++.+|||+|||-|+-...+....-..++|+|++...++.|+++.+... ..-...++.+|..... . T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331) T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331) T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc Confidence 789999999999997777777645699999999999999999983211 1124577888865432 2 Q ss_pred -CCCccEEEEechhhcc--ChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 99 -ANKYDRIISCGMIEHV--GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 99 -~~~fD~V~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) ...||+|-+..++|+. +.+....+++++...|+|||+++.+.+. T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331) T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331) T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE- T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC Confidence 2599999999999997 3345577999999999999999986554 No 141 >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional Probab=99.30 E-value=5.3e-11 Score=105.93 Aligned_cols=107 Identities=19% Similarity=0.135 Sum_probs=85.2 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC-----CCCCccEEEE Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP-----KANKYDRIIS 107 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272) ++.+|||+|||+|.++..++.....+|+++|+|+.+++.++++++.+++. ++++++++|+.+.. ..++||+|++ T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396) T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396) T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE Confidence 57899999999999998776643449999999999999999999999985 47999999987753 2468999999 Q ss_pred echhhccCh-------hhHHHHHHHHHhcCccCcEEEEEe Q 024096 108 CGMIEHVGH-------DYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 108 ~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ......-.. +....+++.+.++|+|||.++... T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396) T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396) T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe Confidence 866432211 234556677889999999998744 No 142 >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional Probab=99.30 E-value=5.6e-11 Score=96.01 Aligned_cols=114 Identities=14% Similarity=0.094 Sum_probs=85.3 Q ss_pred HHHHHHcC-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272) Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272) +.+++.+. ..++.+|||+|||+|.++..++.+...+|+++|+++..++.++++++.+++. ++.++++|+.+.. ... T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~ 120 (199) T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGT 120 (199) T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCC Confidence 33444443 2467899999999999998755554579999999999999999999998874 7999999986633 335 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHh--cCccCcEEEEEee Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCES--LLATHGLLVLQFI 141 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~i~~~ 141 (272) +||+|+++..+.. .-....++.+.. +|+|++.++++.. T Consensus 121 ~fDlV~~DPPy~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199) T PRK10909 121 PHNVVFVDPPFRK---GLLEETINLLEDNGWLADEALIYVESE 160 (199) T ss_pred CceEEEECCCCCC---ChHHHHHHHHHHCCCcCCCcEEEEEec Confidence 7999999988532 122445555544 4899999998644 No 143 >PLN02672 methionine S-methyltransferase Probab=99.29 E-value=1.2e-10 Score=113.78 Aligned_cols=106 Identities=22% Similarity=0.381 Sum_probs=83.4 Q ss_pred CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC---------------CCeEEEEcccCCCCC Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQ---------------DHIRFYLCDYRQLPK 98 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~---------------~~i~~~~~d~~~~~~ 98 (272) +.+|||+|||+|.+++.+++. +..+++++|+|+.+++.|++|+..+++. ++++++++|+.+... T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082) T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082) T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc Confidence 569999999999999999987 5689999999999999999999886532 479999999876542 Q ss_pred C--CCccEEEEechhh------ccC------------------------------hhhHHHHHHHHHhcCccCcEEEEEe Q 024096 99 A--NKYDRIISCGMIE------HVG------------------------------HDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 99 ~--~~fD~V~~~~~~~------~~~------------------------------~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) + .+||+|+++..-- .+. -.....+++++.++|+|||.+++.. T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082) T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082) T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE Confidence 2 3699999986411 110 0112567888889999999999853 No 144 >PHA03412 putative methyltransferase; Provisional Probab=99.28 E-value=3.9e-11 Score=98.08 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=76.0 Q ss_pred CCCEEEEECCCchHHHHHHHHc----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ----TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG 109 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~----~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272) .+.+|||+|||+|.++..++++ ...+|+++|+++.+++.|+++. .++.++++|+...+.+++||+|+++. T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241) T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEFDTLFDMAISNP 122 (241) T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccccCCccEEEECC Confidence 3679999999999999998875 2469999999999999999774 25789999998766557999999998 Q ss_pred hhhccC----------hhhHHHHHHHHHhcCccCcE Q 024096 110 MIEHVG----------HDYMEEFFGCCESLLATHGL 135 (272) Q Consensus 110 ~~~~~~----------~~~~~~~l~~~~~~LkpgG~ 135 (272) .+.-.. ......+++.+.+++++|+. T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241) T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241) T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE Confidence 776332 12245688888887766664 No 145 >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. Probab=99.28 E-value=6.2e-11 Score=95.40 Aligned_cols=133 Identities=19% Similarity=0.284 Sum_probs=86.6 Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchH----HHHHHHHc----c--CCEEEEEcCCHHHHHHHHHH Q 024096 7 IFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGT----LAIEIVKQ----T--GCKYTGITLSEEQLKYAEIK 76 (272) Q Consensus 7 ~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~----~~~~l~~~----~--~~~v~gvd~s~~~~~~a~~~ 76 (272) +|-.+.+.++..+...+..+++.....+.-+|+..||++|. +++.+.+. . ..+|+|+|+|+..++.|++- T Consensus 4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196) T PF01739_consen 4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196) T ss_dssp -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT T ss_pred cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC Confidence 45566667777777777666665554566899999999994 55555551 1 36999999999999999872 Q ss_pred H--------------HH-----c--------CCCCCeEEEEcccCC-CCCCCCccEEEEechhhccChhhHHHHHHHHHh Q 024096 77 V--------------RE-----A--------GLQDHIRFYLCDYRQ-LPKANKYDRIISCGMIEHVGHDYMEEFFGCCES 128 (272) Q Consensus 77 ~--------------~~-----~--------g~~~~i~~~~~d~~~-~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~ 128 (272) . .+ . .+.++|.|.+.|+.+ .+..+.||+|+|.+++-++..+....+++++++ T Consensus 84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~ 163 (196) T PF01739_consen 84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHR 163 (196) T ss_dssp EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGG T ss_pred CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHH Confidence 1 00 0 122479999999988 446689999999999999998888999999999 Q ss_pred cCccCcEEEEE Q 024096 129 LLATHGLLVLQ 139 (272) Q Consensus 129 ~LkpgG~l~i~ 139 (272) .|+|||+|++. T Consensus 164 ~L~pgG~L~lG 174 (196) T PF01739_consen 164 SLKPGGYLFLG 174 (196) T ss_dssp GEEEEEEEEE- T ss_pred HcCCCCEEEEe Confidence 99999999983 No 146 >PLN02366 spermidine synthase Probab=99.26 E-value=4.3e-11 Score=102.96 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=83.8 Q ss_pred CCCCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCCC---CCCCccEE Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREA--GL-QDHIRFYLCDYRQLP---KANKYDRI 105 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~~---~~~~fD~V 105 (272) ..+.+||+||||.|..+..+++.++ .+|+.+|+++.+++.+++.+... ++ .++++++.+|....- +.++||+| T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308) T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308) T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE Confidence 5678999999999999999998844 68999999999999999987643 22 358999999975542 24689999 Q ss_pred EEechhhccChh--hHHHHHHHHHhcCccCcEEEEE Q 024096 106 ISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 106 ~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ++...-.+.+.. ....+++.+.+.|+|||.++.+ T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308) T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308) T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC Confidence 996543322211 1257899999999999999874 No 147 >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... Probab=99.26 E-value=5.2e-11 Score=96.11 Aligned_cols=104 Identities=27% Similarity=0.385 Sum_probs=83.2 Q ss_pred CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEec Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISCG 109 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~~ 109 (272) ...+||||||.|.+...+|+. ++..++|+|+....+..+..++...++ .|+.++++|+..+- +++++|.|+... T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F 96 (195) T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINF 96 (195) T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeC Confidence 348999999999999999998 999999999999999999999999888 49999999988832 568999999987 Q ss_pred hhhccChhh------HHHHHHHHHhcCccCcEEEEE Q 024096 110 MIEHVGHDY------MEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 110 ~~~~~~~~~------~~~~l~~~~~~LkpgG~l~i~ 139 (272) .-.|.-.+. ...+++.+.++|+|||.+.+. T Consensus 97 PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~ 132 (195) T PF02390_consen 97 PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA 132 (195) T ss_dssp -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE T ss_pred CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE Confidence 665542211 257999999999999999884 No 148 >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. Probab=99.26 E-value=2.2e-10 Score=101.79 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=85.7 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANK 101 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~ 101 (272) +.+.+.+...++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+++++.+++. +++++++|+.+.. ...+ T Consensus 223 ~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~ 300 (374) T TIGR02085 223 ATARQWVREIPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSA 300 (374) T ss_pred HHHHHHHHhcCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCC Confidence 33444444345679999999999999999975 689999999999999999999999884 8999999987654 2246 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ||+|++...-..+. ..+++.+. .++|++.++++. T Consensus 301 ~D~vi~DPPr~G~~----~~~l~~l~-~~~p~~ivyvsc 334 (374) T TIGR02085 301 PELVLVNPPRRGIG----KELCDYLS-QMAPKFILYSSC 334 (374) T ss_pred CCEEEECCCCCCCc----HHHHHHHH-hcCCCeEEEEEe Confidence 99999988755442 34555554 368999888853 No 149 >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. Probab=99.26 E-value=1.8e-10 Score=104.53 Aligned_cols=114 Identities=17% Similarity=0.234 Sum_probs=89.1 Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC- Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272) Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272) ....++.+.+.+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++..+++ ++++++.+|+.+.. T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~ 354 (431) T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLP 354 (431) T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHH Confidence 3344566777777778899999999999999999986 56999999999999999999999887 48999999987532 Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ...+||+|+....-..+. ..+++.+.+ ++|++.++++ T Consensus 355 ~~~~~~~~~D~vi~dPPr~G~~----~~~l~~l~~-l~~~~ivyvs 395 (431) T TIGR00479 355 KQPWAGQIPDVLLLDPPRKGCA----AEVLRTIIE-LKPERIVYVS 395 (431) T ss_pred HHHhcCCCCCEEEECcCCCCCC----HHHHHHHHh-cCCCEEEEEc Confidence 235799999876533221 455555554 7898887774 No 150 >TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. Probab=99.24 E-value=1.6e-10 Score=98.21 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=82.4 Q ss_pred CCCCEEEEECCCchHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccEEE Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAG--L-QDHIRFYLCDYRQLP--KANKYDRII 106 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g--~-~~~i~~~~~d~~~~~--~~~~fD~V~ 106 (272) +.+.+||+||||+|.++..+++.. ..+++++|+++.+++.+++.+...+ . .++++++.+|..+.- ..++||+|+ T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270) T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270) T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE Confidence 445699999999999999988873 5689999999999999999875432 1 247888888876532 347899999 Q ss_pred EechhhccChhh--HHHHHHHHHhcCccCcEEEEE Q 024096 107 SCGMIEHVGHDY--MEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 107 ~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~ 139 (272) +......-+... ..++++.+.+.|+|||.+++. T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270) T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270) T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc Confidence 976532222122 368899999999999999985 No 151 >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... Probab=99.23 E-value=7.5e-11 Score=106.33 Aligned_cols=103 Identities=19% Similarity=0.318 Sum_probs=80.8 Q ss_pred CCEEEEECCCchHHHHHHHHcc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEec Q 024096 35 GQEVLDIGCGWGTLAIEIVKQT-----GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCG 109 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~-----~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272) +..|||+|||+|.++...++.. ..+|+++|.++..+...++.++.+++.++|+++++|+++...++++|+|+|-. T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448) T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448) T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE-- T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec Confidence 5789999999999998776652 36999999999999888888788899899999999999999667999999976 Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEE Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) +-.....+-.++.+....+.|||||.++ T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448) T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448) T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe Confidence 5433333455778888999999999876 No 152 >PLN02589 caffeoyl-CoA O-methyltransferase Probab=99.22 E-value=1.8e-10 Score=95.85 Aligned_cols=105 Identities=13% Similarity=0.147 Sum_probs=88.8 Q ss_pred CCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----C----CCCc Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----K----ANKY 102 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~----~~~f 102 (272) ....+|||||+++|..+.++++. .+.+++.+|.+++..+.|+++++..|+.++|+++.+|+.+.- . .++| T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247) T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247) T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc Confidence 35679999999999999999986 467999999999999999999999999899999999986642 1 2689 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) |+|+...- ......+++.+.++|+|||.+++.+.. T Consensus 158 D~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DNvl 192 (247) T PLN02589 158 DFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDNTL 192 (247) T ss_pred cEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcCCC Confidence 99998632 345678899999999999999885444 No 153 >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] Probab=99.22 E-value=8.6e-11 Score=100.14 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=86.0 Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272) Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272) .+-.+..|||+|||+|.++.+.|+....+|+++|.|. +++.|++.++.+++.+.++++.+.++++. |.++.|+|+|.+ T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346) T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346) T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh Confidence 3567899999999999999999998556899999765 55999999999999888999999999987 569999999987 Q ss_pred hhhccChhhH-HHHHHHHHhcCccCcEEE Q 024096 110 MIEHVGHDYM-EEFFGCCESLLATHGLLV 137 (272) Q Consensus 110 ~~~~~~~~~~-~~~l~~~~~~LkpgG~l~ 137 (272) +-..+-.+.+ ..++-.=-+.|+|||.++ T Consensus 136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346) T KOG1499|consen 136 MGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346) T ss_pred hhHHHHHhhhhhhhhhhhhhccCCCceEc Confidence 7665532322 233333358999999886 No 154 >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. Probab=99.21 E-value=3.1e-10 Score=89.98 Aligned_cols=122 Identities=17% Similarity=0.312 Sum_probs=83.7 Q ss_pred HHHHHHHHHHHH------cCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEE Q 024096 18 GQMRKVSVLIEK------ARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--LQDHIRF 88 (272) Q Consensus 18 aq~~~~~~l~~~------l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~~~~i~~ 88 (272) +.....+++.+. .....+.+|||+|||+|..++.++.. ...+|+..|.++ .++..+.+++.++ ...++.+ T Consensus 23 aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v 101 (173) T PF10294_consen 23 AALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSV 101 (173) T ss_dssp HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EE T ss_pred hHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccC Confidence 334444555553 33567889999999999999999987 678999999998 9999999999877 5568899 Q ss_pred EEcccCCCC-----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 89 YLCDYRQLP-----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 89 ~~~d~~~~~-----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) ...|+.+.. ...+||+|+...+++.- +..+.+++.+.++|+|+|.+++.... T Consensus 102 ~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~--~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173) T PF10294_consen 102 RPLDWGDELDSDLLEPHSFDVILASDVLYDE--ELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173) T ss_dssp EE--TTS-HHHHHHS-SSBSEEEEES--S-G--GGHHHHHHHHHHHBTT-TTEEEEEE- T ss_pred cEEEecCcccccccccccCCEEEEecccchH--HHHHHHHHHHHHHhCCCCEEEEEeCE Confidence 998876522 34689999999999975 67789999999999999997775443 No 155 >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. Probab=99.20 E-value=2.3e-10 Score=91.15 Aligned_cols=127 Identities=19% Similarity=0.310 Sum_probs=83.0 Q ss_pred HHHHHHHHcCCCC-CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CC Q 024096 22 KVSVLIEKARVSK-GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KA 99 (272) Q Consensus 22 ~~~~l~~~l~~~~-~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~ 99 (272) -++.+++.+.-.+ +..|-|+|||.+.++..+. .+.+|..+|+-+ .+-.+..+|+..+| ++ T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~--~~~~V~SfDLva----------------~n~~Vtacdia~vPL~~ 120 (219) T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP--NKHKVHSFDLVA----------------PNPRVTACDIANVPLED 120 (219) T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH----S---EEEEESS-----------------SSTTEEES-TTS-S--T T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc--cCceEEEeeccC----------------CCCCEEEecCccCcCCC Confidence 3467788877544 5799999999999986543 246899999854 23357889999999 88 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhh Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMT 179 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~ 179 (272) ++.|+++.+.++..- +...++++..|+|||||.+.|.++.. ++.......+.+ T Consensus 121 ~svDv~VfcLSLMGT---n~~~fi~EA~RvLK~~G~L~IAEV~S-----------------------Rf~~~~~F~~~~- 173 (219) T PF05148_consen 121 ESVDVAVFCLSLMGT---NWPDFIREANRVLKPGGILKIAEVKS-----------------------RFENVKQFIKAL- 173 (219) T ss_dssp T-EEEEEEES---SS----HHHHHHHHHHHEEEEEEEEEEEEGG-----------------------G-S-HHHHHHHH- T ss_pred CceeEEEEEhhhhCC---CcHHHHHHHHheeccCcEEEEEEecc-----------------------cCcCHHHHHHHH- Confidence 999999998887764 67899999999999999999987751 234566676554 Q ss_pred cCCCcEEEEEEecC Q 024096 180 SSSGLCVEHLENIG 193 (272) Q Consensus 180 ~~~Gf~v~~~~~~~ 193 (272) +..||.+...+... T Consensus 174 ~~~GF~~~~~d~~n 187 (219) T PF05148_consen 174 KKLGFKLKSKDESN 187 (219) T ss_dssp HCTTEEEEEEE--S T ss_pred HHCCCeEEecccCC Confidence 46999998765433 No 156 >PRK03612 spermidine synthase; Provisional Probab=99.19 E-value=1.6e-10 Score=106.78 Aligned_cols=108 Identities=26% Similarity=0.232 Sum_probs=83.0 Q ss_pred CCCCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHH--HHH---cCC-CCCeEEEEcccCCCC--CCCCcc Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIK--VRE---AGL-QDHIRFYLCDYRQLP--KANKYD 103 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~--~~~---~g~-~~~i~~~~~d~~~~~--~~~~fD 103 (272) +++.+|||+|||+|..+..+++++. .+++++|+++++++.++++ ... ... .++++++.+|..+.. .+++|| T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521) T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521) T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC Confidence 4568999999999999999988754 7999999999999999983 221 112 258999999987743 357999 Q ss_pred EEEEechhhccCh---hhHHHHHHHHHhcCccCcEEEEEe Q 024096 104 RIISCGMIEHVGH---DYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 104 ~V~~~~~~~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +|++.......+. -...++++.+.+.|||||.++++. T Consensus 376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521) T PRK03612 376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521) T ss_pred EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec Confidence 9999854332211 112468999999999999999853 No 157 >PRK01581 speE spermidine synthase; Validated Probab=99.18 E-value=2.2e-10 Score=99.32 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=81.6 Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHH-----HHcCC-CCCeEEEEcccCCCC--CCCCc Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKV-----REAGL-QDHIRFYLCDYRQLP--KANKY 102 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~-----~~~g~-~~~i~~~~~d~~~~~--~~~~f 102 (272) .....+||++|||.|..+..+.+. +..+|+++|+++.+++.|++.. ....+ .++++++.+|..+.. ..++| T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374) T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374) T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc Confidence 345579999999999999988887 3479999999999999999621 11122 368999999988753 45789 Q ss_pred cEEEEechhh---ccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 103 DRIISCGMIE---HVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 103 D~V~~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) |+|++...-. ....-.-.++++.+.+.|+|||++++. T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374) T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374) T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe Confidence 9999974211 111112267999999999999999875 No 158 >PRK11727 23S rRNA mA1618 methyltransferase; Provisional Probab=99.18 E-value=5.6e-10 Score=96.24 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=67.4 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEE-cccCCCC-----CCCCccEE Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA-GLQDHIRFYL-CDYRQLP-----KANKYDRI 105 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~-g~~~~i~~~~-~d~~~~~-----~~~~fD~V 105 (272) ++.+|||||||+|.+...++.+ ++.+++|+|+++.+++.|++++..+ ++.+++.++. .|...+. +.+.||+| T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321) T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321) T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE Confidence 5689999999999888888776 7899999999999999999999999 7888888864 3332222 35689999 Q ss_pred EEechhhccC Q 024096 106 ISCGMIEHVG 115 (272) Q Consensus 106 ~~~~~~~~~~ 115 (272) +|+..++.-. T Consensus 194 vcNPPf~~s~ 203 (321) T PRK11727 194 LCNPPFHASA 203 (321) T ss_pred EeCCCCcCcc Confidence 9999887543 No 159 >KOG2899 consensus Predicted methyltransferase [General function prediction only] Probab=99.17 E-value=4.1e-10 Score=90.95 Aligned_cols=105 Identities=27% Similarity=0.487 Sum_probs=78.3 Q ss_pred CCCCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHc------------------------------- Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREA------------------------------- 80 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~------------------------------- 80 (272) ..+..+|||||..|.++..+++..+ ..+.|+||++..+..|+++++.. T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288) T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288) T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc Confidence 3567999999999999999999844 47999999999999999987532 Q ss_pred ---CCCCCeEEE-------EcccCCCCCCCCccEEEEechhhcc----ChhhHHHHHHHHHhcCccCcEEEE Q 024096 81 ---GLQDHIRFY-------LCDYRQLPKANKYDRIISCGMIEHV----GHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 81 ---g~~~~i~~~-------~~d~~~~~~~~~fD~V~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) ..++++.+. ..|+.+. ....||+|+|..+..++ +|+-+..++++++++|.|||++++ T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~-~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288) T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDM-IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288) T ss_pred ccccCCcchhcccccEEEecchhhhh-ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE Confidence 011122222 2222211 34689999987654433 667789999999999999999998 No 160 >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] Probab=99.16 E-value=3.4e-10 Score=95.44 Aligned_cols=105 Identities=24% Similarity=0.232 Sum_probs=88.1 Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechh Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272) ...+..|||+|||+|.++.+.++....+|+++|. .+|.++|++.+..+.+.++|.++.|-++++..+++.|+|++..+- T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517) T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517) T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch Confidence 3467899999999999999999986679999996 569999999999999999999999999999877999999998765 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEE Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) ..+-.+...+-.-..++.|||.|..+ T Consensus 254 ~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517) T KOG1500|consen 254 YMLVNERMLESYLHARKWLKPNGKMF 279 (517) T ss_pred hhhhhHHHHHHHHHHHhhcCCCCccc Confidence 55544444444445679999999987 No 161 >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] Probab=99.15 E-value=3.4e-10 Score=92.97 Aligned_cols=103 Identities=23% Similarity=0.304 Sum_probs=88.9 Q ss_pred CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEech Q 024096 36 QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISCGM 110 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~~~ 110 (272) ..+||||||.|.....+|++ |...++|+|+....+..+.+.+.+.++. |+.+++.|+..+- ++++.|-|+.++. T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227) T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227) T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC Confidence 58999999999999999999 8899999999999999999999999986 9999999987754 4559999999877 Q ss_pred hhccChh------hHHHHHHHHHhcCccCcEEEEE Q 024096 111 IEHVGHD------YMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 111 ~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 139 (272) -.|--.+ -.+.+++.+.+.|+|||.+.+. T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227) T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227) T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE Confidence 6554111 1257999999999999999984 No 162 >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] Probab=99.15 E-value=1.8e-09 Score=92.28 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=112.6 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272) .-...+|+|.|.|..+..+... -.++-+++++...+..+...+. . .|+.+-+|+.+-- .+-|+||..+++|| T Consensus 177 ~v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~~--P~~daI~mkWiLhd 248 (342) T KOG3178|consen 177 GVNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQDT--PKGDAIWMKWILHD 248 (342) T ss_pred cCceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C----CcceecccccccC--CCcCeEEEEeeccc Confidence 3489999999999999999886 3458888888887777766653 2 3788888865543 24469999999999 Q ss_pred cChhhHHHHHHHHHhcCccCcEEEEEeecCCC-Cccccc----cCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEE Q 024096 114 VGHDYMEEFFGCCESLLATHGLLVLQFISAPD-QCYDEY----RLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEH 188 (272) Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~~----~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~ 188 (272) ++|++...++++|+..|+|||.+++.+...+. ...... ....+.+.....++|--.+..++. .++.++||.+.. T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q-~l~~~~gF~~~~ 327 (342) T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQ-ALLPEEGFPVCM 327 (342) T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHH-hcchhhcCceeE Confidence 99999999999999999999999999887765 222211 111122223333444445666665 566679999888 Q ss_pred EEecCccHH Q 024096 189 LENIGIHYY 197 (272) Q Consensus 189 ~~~~~~~~~ 197 (272) +-....+|. T Consensus 328 ~~~~~~~~~ 336 (342) T KOG3178|consen 328 VALTAYSYS 336 (342) T ss_pred EEeccCccc Confidence 777666554 No 163 >PTZ00338 dimethyladenosine transferase-like protein; Provisional Probab=99.14 E-value=4.1e-10 Score=96.46 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=78.4 Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272) Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272) ...++.+++.+.+.++.+|||||||+|.++..+++. +.+++++|+++.+++.+++++...+..++++++++|+.+.+. T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~- 99 (294) T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF- 99 (294) T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc- Confidence 455678888889899999999999999999999986 678999999999999999998876655689999999987663 Q ss_pred CCccEEEEechhhc Q 024096 100 NKYDRIISCGMIEH 113 (272) Q Consensus 100 ~~fD~V~~~~~~~~ 113 (272) ..||.|+++..... T Consensus 100 ~~~d~VvaNlPY~I 113 (294) T PTZ00338 100 PYFDVCVANVPYQI 113 (294) T ss_pred cccCEEEecCCccc Confidence 36899998765443 No 164 >KOG2904 consensus Predicted methyltransferase [General function prediction only] Probab=99.13 E-value=2.2e-09 Score=88.33 Aligned_cols=112 Identities=21% Similarity=0.313 Sum_probs=87.4 Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------CCCCccE Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------KANKYDR 104 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------~~~~fD~ 104 (272) ...+..+||+|||+|..+..++.. +.++++++|.|+.++..|.+|+..+++.+++.+++-+++.-. ..+++|+ T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328) T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328) T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE Confidence 345568999999999999999887 889999999999999999999999999999999866554322 4579999 Q ss_pred EEEechhhcc------------------------ChhhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 105 IISCGMIEHV------------------------GHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 105 V~~~~~~~~~------------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) ++++...--- +.+....++.-+.|+|+|||.+.+..... T Consensus 226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328) T KOG2904|consen 226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328) T ss_pred EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc Confidence 9998642110 11233446666789999999999865543 No 165 >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] Probab=99.13 E-value=1.1e-09 Score=85.66 Aligned_cols=81 Identities=23% Similarity=0.354 Sum_probs=68.7 Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272) ..+.-.|.+|+|+|||+|.++.-.+-....+|+|+|++++.++.+++|..+. ..++.++++|+.+.. ..+|.|+.+ T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv~~~~--~~~dtvimN 115 (198) T COG2263 40 LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADVSDFR--GKFDTVIMN 115 (198) T ss_pred HcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcchhhcC--CccceEEEC Confidence 3344567899999999999999888764479999999999999999999883 368999999999987 778999998 Q ss_pred chhhc Q 024096 109 GMIEH 113 (272) Q Consensus 109 ~~~~~ 113 (272) ..+-- T Consensus 116 PPFG~ 120 (198) T COG2263 116 PPFGS 120 (198) T ss_pred CCCcc Confidence 87653 No 166 >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] Probab=99.13 E-value=3.8e-10 Score=91.95 Aligned_cols=123 Identities=22% Similarity=0.365 Sum_probs=95.4 Q ss_pred HHHHHHcCCCC-CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC Q 024096 24 SVLIEKARVSK-GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272) Q Consensus 24 ~~l~~~l~~~~-~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272) +.+++.+...+ ...|-|+|||-+.++. .. ..+|+.+|+-+ .+-+++.+|+.++| ++++ T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~d~s 228 (325) T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA----------------VNERVIACDMRNVPLEDES 228 (325) T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec----------------CCCceeeccccCCcCccCc Confidence 67777777544 4689999999988765 22 45899999743 25588999999999 8899 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcC Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSS 181 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~ 181 (272) .|+++.+.++.. .++..+++++.|+|+|||.++|.++. +.+++...+.+.+. . T Consensus 229 vDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~-----------------------SRf~dv~~f~r~l~-~ 281 (325) T KOG3045|consen 229 VDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVK-----------------------SRFSDVKGFVRALT-K 281 (325) T ss_pred ccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehh-----------------------hhcccHHHHHHHHH-H Confidence 999998877665 46789999999999999999997665 23456666776655 5 Q ss_pred CCcEEEEEEecC Q 024096 182 SGLCVEHLENIG 193 (272) Q Consensus 182 ~Gf~v~~~~~~~ 193 (272) .||.+.+..... T Consensus 282 lGF~~~~~d~~n 293 (325) T KOG3045|consen 282 LGFDVKHKDVSN 293 (325) T ss_pred cCCeeeehhhhc Confidence 999988765543 No 167 >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. Probab=99.13 E-value=2.5e-09 Score=89.19 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=92.2 Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEE Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRI 105 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V 105 (272) ...-+||||.||.|......... +. ..|...|.|+..++..++.++..|+.+-++|.++|+.+.. .....+++ T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311) T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311) T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE Confidence 35579999999999987776665 44 6899999999999999999999999877799999987754 24568999 Q ss_pred EEechhhccChhh-HHHHHHHHHhcCccCcEEEEE Q 024096 106 ISCGMIEHVGHDY-MEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 106 ~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~ 139 (272) ++++.++.+++++ ....++.+.+.+.|||+++.+ T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyT 248 (311) T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYT 248 (311) T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEc Confidence 9999999999876 456799999999999999984 No 168 >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] Probab=99.12 E-value=7.9e-10 Score=97.38 Aligned_cols=122 Identities=25% Similarity=0.261 Sum_probs=95.8 Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccC Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYR 94 (272) Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~ 94 (272) .-|+..-..+-+.+. |++|||+-|=||+++.+.+.. |+ +|++||+|...+++|++|.+.||++ +++.++++|+. T Consensus 203 lDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf 278 (393) T COG1092 203 LDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278 (393) T ss_pred HHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH Confidence 344444444444432 899999999999999999985 76 9999999999999999999999984 56899999987 Q ss_pred CCC-----CCCCccEEEEechhhcc-------ChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 95 QLP-----KANKYDRIISCGMIEHV-------GHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 95 ~~~-----~~~~fD~V~~~~~~~~~-------~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) +.- ...+||+|+....-.-- ..++...++..+.++|+|||.+++++.. T Consensus 279 ~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393) T COG1092 279 KWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393) T ss_pred HHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC Confidence 754 34699999997643221 1245677899999999999999986544 No 169 >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] Probab=99.12 E-value=4.7e-10 Score=94.16 Aligned_cols=107 Identities=20% Similarity=0.263 Sum_probs=83.9 Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC-CC----CeEEEEcccCCC------C-CC Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL-QD----HIRFYLCDYRQL------P-KA 99 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~-~~----~i~~~~~d~~~~------~-~~ 99 (272) .++++.++|+|||-|+-.+.+-+..-..++|+||+...++.|+++.+..-- .+ .+.|+.+|-... + .+ T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389) T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389) T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC Confidence 367889999999999988887776445899999999999999998865421 11 368888885432 2 23 Q ss_pred CCccEEEEechhhcc--ChhhHHHHHHHHHhcCccCcEEEE Q 024096 100 NKYDRIISCGMIEHV--GHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 100 ~~fD~V~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .+||+|-|..++|+. +.+...-+++++.+.|+|||+++- T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389) T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389) T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE Confidence 449999999998875 334567799999999999999986 No 170 >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional Probab=99.12 E-value=1.4e-09 Score=91.95 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=75.4 Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272) Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272) ..+.++.+++.+++.++.+|||+|||+|.++..+++. +.+++++|+++.+++.+++++.. .+++.++++|+.+.+. T Consensus 14 d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~~~~ 89 (258) T PRK14896 14 DDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALKVDL 89 (258) T ss_pred CHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccccCCc Confidence 3455678888888889999999999999999999997 67999999999999999988754 2489999999988773 Q ss_pred CCCccEEEEechhh Q 024096 99 ANKYDRIISCGMIE 112 (272) Q Consensus 99 ~~~fD~V~~~~~~~ 112 (272) ..||.|+++.... T Consensus 90 -~~~d~Vv~NlPy~ 102 (258) T PRK14896 90 -PEFNKVVSNLPYQ 102 (258) T ss_pred -hhceEEEEcCCcc Confidence 2489999987654 No 171 >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. Probab=99.10 E-value=4.3e-10 Score=90.64 Aligned_cols=100 Identities=25% Similarity=0.392 Sum_probs=76.3 Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM 110 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~ 110 (272) ..++.+|+|+.||.|.++..+++. .++.|+++|++|..++..+++++.+++.+++..+++|..++.....+|.|++... T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200) T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200) T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh Confidence 568999999999999999999985 5779999999999999999999999999899999999998877789999998653 Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEE Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) -.. ..++..+.+++++||.+. T Consensus 179 ~~~------~~fl~~~~~~~~~~g~ih 199 (200) T PF02475_consen 179 ESS------LEFLDAALSLLKEGGIIH 199 (200) T ss_dssp SSG------GGGHHHHHHHEEEEEEEE T ss_pred HHH------HHHHHHHHHHhcCCcEEE Confidence 221 367888888999998875 No 172 >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed Probab=99.10 E-value=1.2e-09 Score=92.91 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=71.8 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272) ...+.+++.+.+.++.+|||+|||+|.++..++++ +.+++|+|+++.+++.++++... ++++++++|+.+.+.++ T Consensus 29 ~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~ 103 (272) T PRK00274 29 NILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE 103 (272) T ss_pred HHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH Confidence 45677888888889999999999999999999997 45999999999999999887632 48999999999887322 Q ss_pred C-ccEEEEechh Q 024096 101 K-YDRIISCGMI 111 (272) Q Consensus 101 ~-fD~V~~~~~~ 111 (272) . +|.|+++... T Consensus 104 ~~~~~vv~NlPY 115 (272) T PRK00274 104 LQPLKVVANLPY 115 (272) T ss_pred cCcceEEEeCCc Confidence 2 5888887653 No 173 >TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. Probab=99.09 E-value=1.4e-09 Score=87.51 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=81.0 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C---CC-CCccEEEEe Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P---KA-NKYDRIISC 108 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~---~~-~~fD~V~~~ 108 (272) .+.+|||++||+|.++..++++...+|+++|.++..++.++++++.+++.++++++++|+.+. . .. ..||+|+.. T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189) T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189) T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC Confidence 578999999999999999999833489999999999999999999998877899999998553 2 12 247888887 Q ss_pred chhhccChhhHHHHHHHHH--hcCccCcEEEEEe Q 024096 109 GMIEHVGHDYMEEFFGCCE--SLLATHGLLVLQF 140 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~ 140 (272) ..+.. .....+++.+. .+|+++|.+++.. T Consensus 129 PPy~~---~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189) T TIGR00095 129 PPFFN---GALQALLELCENNWILEDTVLIVVEE 159 (189) T ss_pred cCCCC---CcHHHHHHHHHHCCCCCCCeEEEEEe Confidence 76643 22344455443 4789999888753 No 174 >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. Probab=99.07 E-value=2.6e-09 Score=85.16 Aligned_cols=114 Identities=25% Similarity=0.374 Sum_probs=84.6 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCE---------EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCK---------YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~---------v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272) ..|+......++..|||.-||+|.+.+..+.. .+.. ++|.|+++.+++.+++|++..++...+.+.+.|+ T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179) T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179) T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch Confidence 45566667788999999999999999888776 4444 8999999999999999999999988899999999 Q ss_pred CCCC-CCCCccEEEEechhhcc-Ch-----hhHHHHHHHHHhcCccCcEEE Q 024096 94 RQLP-KANKYDRIISCGMIEHV-GH-----DYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 94 ~~~~-~~~~fD~V~~~~~~~~~-~~-----~~~~~~l~~~~~~LkpgG~l~ 137 (272) .+++ .++.+|.|+++...-.- +. +-...+++++.+++++...++ T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179) T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179) T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE Confidence 9999 77899999999765432 21 223567888999999943333 No 175 >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed Probab=99.06 E-value=3.4e-09 Score=96.11 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=94.4 Q ss_pred HHHc--CCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCC Q 024096 27 IEKA--RVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KAN 100 (272) Q Consensus 27 ~~~l--~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~ 100 (272) ...+ +..+|.+|||+++|.|+-+.++++.. ...++++|+++..+...++++++.|+. ++.+.+.|...+. ..+ T Consensus 104 ~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~ 182 (470) T PRK11933 104 VAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPE 182 (470) T ss_pred HHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchh Confidence 3445 66899999999999999999999872 368999999999999999999999985 7899999988765 346 Q ss_pred CccEEEEechhh------c-------cCh-------hhHHHHHHHHHhcCccCcEEEEEeecCCCC Q 024096 101 KYDRIISCGMIE------H-------VGH-------DYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272) Q Consensus 101 ~fD~V~~~~~~~------~-------~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272) .||.|+...... . +.. +-..++++++.++|||||+++.++.+.... T Consensus 183 ~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~e 248 (470) T PRK11933 183 TFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNRE 248 (470) T ss_pred hcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHH Confidence 799999653221 1 111 112678999999999999999988876543 No 176 >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] Probab=99.05 E-value=2.9e-09 Score=91.31 Aligned_cols=115 Identities=25% Similarity=0.366 Sum_probs=93.1 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCC-CCCC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQLP-KANK 101 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~-~~~~ 101 (272) +.+++....++|..|||-=||||++.+...-. |++++|.|++..|++-++.|++..+++ ...+... |+..+| ++++ T Consensus 187 R~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl~~~~ 264 (347) T COG1041 187 RAMVNLARVKRGELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPLRDNS 264 (347) T ss_pred HHHHHHhccccCCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCCCCCc Confidence 45556667889999999999999999987774 999999999999999999999998875 4555555 999999 5567 Q ss_pred ccEEEEechhhccC-------hhhHHHHHHHHHhcCccCcEEEEEe Q 024096 102 YDRIISCGMIEHVG-------HDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 102 fD~V~~~~~~~~~~-------~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +|.|++....--.. ++-..++++.++++|++||++++.. T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347) T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347) T ss_pred cceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec Confidence 99999976432211 1335789999999999999999843 No 177 >TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase Probab=99.04 E-value=4e-09 Score=88.90 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=76.3 Q ss_pred HHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC Q 024096 20 MRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA 99 (272) Q Consensus 20 ~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~ 99 (272) ....+.+++.++..++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++... .++++++++|+.+.+.. T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~ 90 (253) T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP 90 (253) T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh Confidence 345677888888888999999999999999999997 45799999999999999887643 25899999999988732 Q ss_pred CCcc---EEEEechhhccChhhHHHHHHHHHh Q 024096 100 NKYD---RIISCGMIEHVGHDYMEEFFGCCES 128 (272) Q Consensus 100 ~~fD---~V~~~~~~~~~~~~~~~~~l~~~~~ 128 (272) .+| .|+++... |++ ..++.++.. T Consensus 91 -~~d~~~~vvsNlPy-~i~----~~il~~ll~ 116 (253) T TIGR00755 91 -DFPKQLKVVSNLPY-NIS----SPLIFKLLE 116 (253) T ss_pred -HcCCcceEEEcCCh-hhH----HHHHHHHhc Confidence 456 77776543 332 345544443 No 178 >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] Probab=99.04 E-value=1.4e-09 Score=86.18 Aligned_cols=108 Identities=22% Similarity=0.281 Sum_probs=84.7 Q ss_pred HHHHHHcC--CCCCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcC--------C-CCCeEEE Q 024096 24 SVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAG--------L-QDHIRFY 89 (272) Q Consensus 24 ~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g--------~-~~~i~~~ 89 (272) ..+++.|. +.||.+.||+|+|+|.++..++.. ++..++|||.-++.++.+++++.+.- + ..++.++ T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237) T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237) T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE Confidence 44555555 679999999999999999988866 34456999999999999999987642 1 2367899 Q ss_pred EcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 90 LCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 90 ~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ++|..... +..+||.|.+.... .+..+++...|++||++++- T Consensus 150 vGDgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~~gGrllip 192 (237) T KOG1661|consen 150 VGDGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLKPGGRLLIP 192 (237) T ss_pred eCCccccCCccCCcceEEEccCc--------cccHHHHHHhhccCCeEEEe Confidence 99988877 56899999987332 34555667778999999983 No 179 >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] Probab=99.04 E-value=3.9e-09 Score=80.63 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=98.1 Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-- Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272) Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272) ..+.|...++...|..|||+|.|+|.++..+.++ ....++.+|.|++.....++.. +.+.++.+|+.++. T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~ 109 (194) T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTT 109 (194) T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHH Confidence 3456777788889999999999999999999987 5568999999999998887764 46779999988765 Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) .+..||.|+|.-.+-.+|.....++++.+...|.+||.++--.+. T Consensus 110 l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194) T COG3963 110 LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194) T ss_pred HhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec Confidence 456899999999999999888889999999999999999864444 No 180 >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] Probab=99.03 E-value=7.5e-09 Score=85.13 Aligned_cols=107 Identities=20% Similarity=0.195 Sum_probs=90.9 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--- Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272) +..++..|++.||.+|||-|+|+|+++..+++. +..+++.+|+.+...+.|++..+..|+++++.+.+.|+.... T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314) T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314) T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc Confidence 367888999999999999999999999999998 667999999999999999999999999999999999998876 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLL 136 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 136 (272) .+..+|.|+.... .+...+..++.+||.+|.- T Consensus 174 ks~~aDaVFLDlP-------aPw~AiPha~~~lk~~g~r 205 (314) T KOG2915|consen 174 KSLKADAVFLDLP-------APWEAIPHAAKILKDEGGR 205 (314) T ss_pred cccccceEEEcCC-------ChhhhhhhhHHHhhhcCce Confidence 3578999998643 2345566666688877743 No 181 >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] Probab=99.02 E-value=1e-08 Score=92.08 Aligned_cols=115 Identities=19% Similarity=0.290 Sum_probs=95.2 Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272) Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272) ....++..+++.+...++++|||+=||.|.++..+|+. ..+|+|+|+++.+++.|+++++.+++. |++|..++.++.. T Consensus 277 ~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~~~ 354 (432) T COG2265 277 VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEEFT 354 (432) T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHHh Confidence 34445678888888888999999999999999999975 789999999999999999999999996 5999999999887 Q ss_pred C----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 K----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) . ...+|+|+....=.-++ +.+++.+.+ ++|...++++ T Consensus 355 ~~~~~~~~~d~VvvDPPR~G~~----~~~lk~l~~-~~p~~IvYVS 395 (432) T COG2265 355 PAWWEGYKPDVVVVDPPRAGAD----REVLKQLAK-LKPKRIVYVS 395 (432) T ss_pred hhccccCCCCEEEECCCCCCCC----HHHHHHHHh-cCCCcEEEEe Confidence 2 25889999987655552 356666555 4788888885 No 182 >PRK10611 chemotaxis methyltransferase CheR; Provisional Probab=99.00 E-value=1.8e-09 Score=91.71 Aligned_cols=105 Identities=16% Similarity=0.182 Sum_probs=84.0 Q ss_pred CCEEEEECCCchH----HHHHHHHcc-----CCEEEEEcCCHHHHHHHHHHH------------------HH-----c-- Q 024096 35 GQEVLDIGCGWGT----LAIEIVKQT-----GCKYTGITLSEEQLKYAEIKV------------------RE-----A-- 80 (272) Q Consensus 35 ~~~vLDiG~G~G~----~~~~l~~~~-----~~~v~gvd~s~~~~~~a~~~~------------------~~-----~-- 80 (272) .-+|+..||.+|- ++..+.+.. ..+|+|+|+|+..++.|++-. .. . T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287) T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287) T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce Confidence 4799999999995 555555531 368999999999999998742 00 0 Q ss_pred -----CCCCCeEEEEcccCCCC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 81 -----GLQDHIRFYLCDYRQLP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 81 -----g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+...|.|.+.|+.+.+ +.+.||+|+|.+++.|++++....+++++++.|+|||+|++. T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287) T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287) T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe Confidence 12346899999988754 357899999999999998888899999999999999999873 No 183 >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated Probab=99.00 E-value=1.3e-08 Score=90.01 Aligned_cols=108 Identities=11% Similarity=0.255 Sum_probs=80.7 Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---- Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272) Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272) .++.+.+.+... +.+|||++||+|.++..+++. ..+|+|+|+++.+++.+++++..+++. +++++.+|+.+.. T Consensus 195 l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~ 271 (362) T PRK05031 195 MLEWALDATKGS-KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMN 271 (362) T ss_pred HHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHh Confidence 345555555432 357999999999999998886 569999999999999999999999884 8999999986632 Q ss_pred C-------------CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 K-------------ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~-------------~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) . ..+||+|+....-.-+ . ..+++.+.+ |++.++++ T Consensus 272 ~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~--~--~~~l~~l~~---~~~ivyvS 319 (362) T PRK05031 272 GVREFNRLKGIDLKSYNFSTIFVDPPRAGL--D--DETLKLVQA---YERILYIS 319 (362) T ss_pred hcccccccccccccCCCCCEEEECCCCCCC--c--HHHHHHHHc---cCCEEEEE Confidence 0 1258999998764332 1 455555543 68888875 No 184 >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] Probab=98.98 E-value=5.9e-09 Score=87.56 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=101.6 Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchH----HHHHHHHc-c-----CCEEEEEcCCHHHHHHHHHH Q 024096 7 IFKSEHEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGT----LAIEIVKQ-T-----GCKYTGITLSEEQLKYAEIK 76 (272) Q Consensus 7 ~~~~~~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~----~~~~l~~~-~-----~~~v~gvd~s~~~~~~a~~~ 76 (272) .|..+.+.++......+..++..... ..-+|+-.||++|. ++..+.+. + ..+|+|+|+|...++.|+.- T Consensus 70 ~FFR~~~~f~~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G 148 (268) T COG1352 70 EFFRDPEHFEELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAG 148 (268) T ss_pred hhccCcHHHHHHHHHHHHHHHhhccC-CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcC Confidence 34455667777777777777765443 56799999999994 55655555 2 47899999999999998762 Q ss_pred H-----HHc-----------------------CCCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHH Q 024096 77 V-----REA-----------------------GLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCE 127 (272) Q Consensus 77 ~-----~~~-----------------------g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~ 127 (272) . ... .+...|.|...|+...+ ..+.||+|+|.+++-+++.+....++++.+ T Consensus 149 ~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~ 228 (268) T COG1352 149 IYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFA 228 (268) T ss_pred CCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHH Confidence 1 000 12235788888877766 667899999999999999888899999999 Q ss_pred hcCccCcEEEE Q 024096 128 SLLATHGLLVL 138 (272) Q Consensus 128 ~~LkpgG~l~i 138 (272) ..|+|||+|++ T Consensus 229 ~~L~~gG~Lfl 239 (268) T COG1352 229 DSLKPGGLLFL 239 (268) T ss_pred HHhCCCCEEEE Confidence 99999999998 No 185 >COG2521 Predicted archaeal methyltransferase [General function prediction only] Probab=98.98 E-value=1.3e-09 Score=87.65 Aligned_cols=109 Identities=26% Similarity=0.354 Sum_probs=83.7 Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCC-CCCeEEEEcccCCCC---CCCCcc Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGL-QDHIRFYLCDYRQLP---KANKYD 103 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~-~~~i~~~~~d~~~~~---~~~~fD 103 (272) ....+.|.+|||.+.|.|..++..+++ |+ +|+.+|.+|..++.|.-|-=..++ ..+++++.+|..++- .+++|| T Consensus 129 ~V~~~~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD 207 (287) T COG2521 129 LVKVKRGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD 207 (287) T ss_pred eeccccCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc Confidence 344567999999999999999999987 66 999999999999888765322222 236899999987654 578899 Q ss_pred EEEEech-hhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 104 RIISCGM-IEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 104 ~V~~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) +|+-... +.+.+.-.-.++.++++|+|||||+++- T Consensus 208 aIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287) T COG2521 208 AIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287) T ss_pred eEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE Confidence 9986543 2223322447899999999999999974 No 186 >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed Probab=98.97 E-value=5.2e-09 Score=96.36 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=100.8 Q ss_pred CCHHHHHHHHHHHHHHHcCC-------CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCC Q 024096 13 EDLEVGQMRKVSVLIEKARV-------SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQD 84 (272) Q Consensus 13 ~~l~~aq~~~~~~l~~~l~~-------~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~ 84 (272) ..+.+.|...++.....+.+ ..+..+||||||.|.++..+|.. ++..++|+|+....+..+...+...++ . T Consensus 319 ~~~~~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~ 397 (506) T PRK01544 319 KSLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-T 397 (506) T ss_pred CCCCHHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-C Confidence 35777888777665544432 35679999999999999999998 889999999999999999888888887 4 Q ss_pred CeEEEEcccCCCC---CCCCccEEEEechhhccChh------hHHHHHHHHHhcCccCcEEEEE Q 024096 85 HIRFYLCDYRQLP---KANKYDRIISCGMIEHVGHD------YMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 85 ~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 139 (272) |+.+++.|+..+. +++++|.|+.++.-.|.-.+ -.+.+++.+.+.|+|||.+.+. T Consensus 398 N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506) T PRK01544 398 NFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506) T ss_pred eEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE Confidence 8999988876544 56889999998876654211 1257999999999999999984 No 187 >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. Probab=98.96 E-value=4.1e-09 Score=84.13 Aligned_cols=108 Identities=24% Similarity=0.338 Sum_probs=82.2 Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272) -++.+|||+-||+|.++....++...+|+.+|.++..+...++|++..+..+++.++..|....- ...+||+|+. T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183) T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183) T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE Confidence 46889999999999999999888556999999999999999999999998778999999954322 4689999999 Q ss_pred echhhccChhhHHHHHHHHH--hcCccCcEEEEEeec Q 024096 108 CGMIEHVGHDYMEEFFGCCE--SLLATHGLLVLQFIS 142 (272) Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~--~~LkpgG~l~i~~~~ 142 (272) ......- .....+++.+. .+|+++|.+++.... T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~ 155 (183) T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLIIIEHSK 155 (183) T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEEET T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEecC Confidence 9876653 11366777776 899999999985443 No 188 >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional Probab=98.94 E-value=7.8e-09 Score=91.71 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=81.5 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-CCCccEEEEechh Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-ANKYDRIISCGMI 111 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-~~~fD~V~~~~~~ 111 (272) ++.+|||++||+|..+..++.. ...+|+++|+++..++.+++|++.+++. ++.+.++|+..+.. .+.||+|++... T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~- 134 (382) T PRK04338 57 PRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF- 134 (382) T ss_pred CCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC- Confidence 3579999999999999999886 3358999999999999999999999885 67899999876543 467999999652 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .. ...++....+.+++||.++++ T Consensus 135 -Gs----~~~~l~~al~~~~~~gilyvS 157 (382) T PRK04338 135 -GS----PAPFLDSAIRSVKRGGLLCVT 157 (382) T ss_pred -CC----cHHHHHHHHHHhcCCCEEEEE Confidence 22 256777767778999999997 No 189 >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. Probab=98.93 E-value=1.6e-08 Score=80.52 Aligned_cols=95 Identities=20% Similarity=0.292 Sum_probs=81.7 Q ss_pred EEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhccC Q 024096 37 EVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVG 115 (272) Q Consensus 37 ~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~ 115 (272) +++|||+|.|-.++.++-. +..+++.+|....-+...+......|++ |++++++.+++.....+||+|++..+. T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~---- 125 (184) T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVA---- 125 (184) T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSS---- T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhc---- Confidence 8999999999999888877 8899999999999999999999999995 899999999993356899999997642 Q ss_pred hhhHHHHHHHHHhcCccCcEEEE Q 024096 116 HDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 116 ~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .+..+++-+...+++||++++ T Consensus 126 --~l~~l~~~~~~~l~~~G~~l~ 146 (184) T PF02527_consen 126 --PLDKLLELARPLLKPGGRLLA 146 (184) T ss_dssp --SHHHHHHHHGGGEEEEEEEEE T ss_pred --CHHHHHHHHHHhcCCCCEEEE Confidence 347889999999999999987 No 190 >KOG2940 consensus Predicted methyltransferase [General function prediction only] Probab=98.93 E-value=1.4e-09 Score=87.18 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=85.5 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechhh Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIE 112 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~ 112 (272) ....++||||+.|.+...+..+.-.+++-+|.|..|++.++.. ...++ .+...++|-+.++ .++++|+|++...+| T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325) T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325) T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccccccchhhhhhhhhhh Confidence 4568999999999999999887445899999999999988754 12222 4677889989898 789999999999999 Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ++ ++++.-+.+|...|||+|.++.+ T Consensus 149 W~--NdLPg~m~~ck~~lKPDg~Fias 173 (325) T KOG2940|consen 149 WT--NDLPGSMIQCKLALKPDGLFIAS 173 (325) T ss_pred hh--ccCchHHHHHHHhcCCCccchhH Confidence 99 77899999999999999999864 No 191 >PLN02823 spermine synthase Probab=98.93 E-value=7.5e-09 Score=90.08 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=81.6 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccEEEE Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--L-QDHIRFYLCDYRQLP--KANKYDRIIS 107 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~-~~~i~~~~~d~~~~~--~~~~fD~V~~ 107 (272) ...+||.||+|.|..+..+.+. ...+++.+|+++..++.+++.+...+ + .++++++.+|..+.- ..++||+|++ T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336) T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336) T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe Confidence 4579999999999999998886 45689999999999999999875431 1 368999999987754 4578999998 Q ss_pred echhhcc---Chh--hHHHHHH-HHHhcCccCcEEEEEe Q 024096 108 CGMIEHV---GHD--YMEEFFG-CCESLLATHGLLVLQF 140 (272) Q Consensus 108 ~~~~~~~---~~~--~~~~~l~-~~~~~LkpgG~l~i~~ 140 (272) ... ... +.. .-.++++ .+.+.|+|||.+++.. T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336) T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336) T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec Confidence 732 111 000 1246787 8999999999998753 No 192 >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] Probab=98.92 E-value=8.4e-08 Score=84.54 Aligned_cols=121 Identities=20% Similarity=0.257 Sum_probs=95.6 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--- Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272) ......++..+|.+|||++++.|+=+.++++. . +..|+++|.++.-+...+++++..|+. ++.+.+.|....+ T Consensus 146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~ 224 (355) T COG0144 146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELL 224 (355) T ss_pred HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccc Confidence 34456778899999999999999999999987 2 356799999999999999999999986 5889999887665 Q ss_pred CC-CCccEEEEechhhcc------Ch--------------hhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 98 KA-NKYDRIISCGMIEHV------GH--------------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 98 ~~-~~fD~V~~~~~~~~~------~~--------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) .. ++||.|+......-. |+ +-..++++...++|||||.|+.++.+... T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355) T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355) T ss_pred cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch Confidence 22 359999986422111 11 22467899999999999999998777443 No 193 >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. Probab=98.92 E-value=1.2e-08 Score=86.56 Aligned_cols=107 Identities=22% Similarity=0.262 Sum_probs=80.7 Q ss_pred CCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC----CCCCccEEEE Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP----KANKYDRIIS 107 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~----~~~~fD~V~~ 107 (272) .+.+|||+-|=+|+++...+.. |+ +|+.||.|...++++++++..||++ +++++++.|+.+.- ..++||+|++ T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286) T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286) T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE Confidence 5789999999999999988775 54 8999999999999999999999985 68999999986632 3469999999 Q ss_pred echhhccC----hhhHHHHHHHHHhcCccCcEEEEEee Q 024096 108 CGMIEHVG----HDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 108 ~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ...-.--+ .++...++..+.++|+|||.+++... T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286) T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286) T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE- T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC Confidence 76422111 14567789999999999999886433 No 194 >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... Probab=98.91 E-value=3.5e-09 Score=88.23 Aligned_cols=177 Identities=23% Similarity=0.219 Sum_probs=103.9 Q ss_pred ccccccCCCCCCHH--HHHHHHHHHHHHHcC--CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH Q 024096 3 YSCAIFKSEHEDLE--VGQMRKVSVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78 (272) Q Consensus 3 y~~~~~~~~~~~l~--~aq~~~~~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~ 78 (272) |...+|....++.. +.-.-.++.+.+.+. ...|.++||||||+-.....-+...-.+|+..|.++..++..++.++ T Consensus 21 Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~ 100 (256) T PF01234_consen 21 YLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLR 100 (256) T ss_dssp HHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHT T ss_pred HHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHC Confidence 55567765555544 222333444544443 23578999999998544332233234589999999999887776554 Q ss_pred Hc----------------CCC-----------CCe-EEEEcccCCCC--CC-----CCccEEEEechhhccCh--hhHHH Q 024096 79 EA----------------GLQ-----------DHI-RFYLCDYRQLP--KA-----NKYDRIISCGMIEHVGH--DYMEE 121 (272) Q Consensus 79 ~~----------------g~~-----------~~i-~~~~~d~~~~~--~~-----~~fD~V~~~~~~~~~~~--~~~~~ 121 (272) +. |-. ..| +++.+|+.+.+ .+ .+||+|++..+++.+.. +.... T Consensus 101 ~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~ 180 (256) T PF01234_consen 101 KEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRR 180 (256) T ss_dssp T-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHH T ss_pred CCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHH Confidence 32 100 123 47889988766 21 35999999999998753 45678 Q ss_pred HHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEE Q 024096 122 FFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLE 190 (272) Q Consensus 122 ~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~ 190 (272) .++++.++|||||.|++........ -......|| .++-.++.++..++++||.|...+ T Consensus 181 al~ni~~lLkpGG~Lil~~~l~~t~---------Y~vG~~~F~--~l~l~ee~v~~al~~aG~~i~~~~ 238 (256) T PF01234_consen 181 ALRNISSLLKPGGHLILAGVLGSTY---------YMVGGHKFP--CLPLNEEFVREALEEAGFDIEDLE 238 (256) T ss_dssp HHHHHHTTEEEEEEEEEEEESS-SE---------EEETTEEEE-----B-HHHHHHHHHHTTEEEEEEE T ss_pred HHHHHHHHcCCCcEEEEEEEcCcee---------EEECCEecc--cccCCHHHHHHHHHHcCCEEEecc Confidence 9999999999999999865542111 111111121 233334444555567999998877 No 195 >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. Probab=98.90 E-value=1.8e-08 Score=88.75 Aligned_cols=108 Identities=11% Similarity=0.204 Sum_probs=80.5 Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC--- Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK--- 98 (272) Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~--- 98 (272) .++.+++.+...+ .+|||++||+|.++..+++. ..+|+|+|+++.+++.+++++..+++. +++++.+|+.+... T Consensus 186 l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~ 262 (353) T TIGR02143 186 MLEWACEVTQGSK-GDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMN 262 (353) T ss_pred HHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHh Confidence 3455556555333 47999999999999999986 459999999999999999999999885 79999999876331 Q ss_pred --------------CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 99 --------------ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 --------------~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ...||+|+....=.-+ . ..+++.+. +|++.++++ T Consensus 263 ~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~--~--~~~l~~l~---~~~~ivYvs 310 (353) T TIGR02143 263 GVREFRRLKGIDLKSYNCSTIFVDPPRAGL--D--PDTCKLVQ---AYERILYIS 310 (353) T ss_pred hccccccccccccccCCCCEEEECCCCCCC--c--HHHHHHHH---cCCcEEEEE Confidence 0138999998763222 1 34555554 378888885 No 196 >PRK04148 hypothetical protein; Provisional Probab=98.90 E-value=6.2e-08 Score=72.58 Aligned_cols=102 Identities=14% Similarity=0.160 Sum_probs=75.8 Q ss_pred HHHHHHcCCCCCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC--CC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK--AN 100 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~--~~ 100 (272) +.+.+.+....+.+|||||||.|. .+..|++. |.+|+++|+++..++.++++ .++++.+|+.+... -. T Consensus 6 ~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~ 76 (134) T PRK04148 6 EFIAENYEKGKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYK 76 (134) T ss_pred HHHHHhcccccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHh Confidence 456666666667899999999996 88888875 89999999999988888765 46899999988762 37 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) .+|+|.+... ..++...+.++++. -|.-+++... T Consensus 77 ~a~liysirp-----p~el~~~~~~la~~--~~~~~~i~~l 110 (134) T PRK04148 77 NAKLIYSIRP-----PRDLQPFILELAKK--INVPLIIKPL 110 (134) T ss_pred cCCEEEEeCC-----CHHHHHHHHHHHHH--cCCCEEEEcC Confidence 8999999743 23445555555553 4555666433 No 197 >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] Probab=98.90 E-value=4e-09 Score=92.38 Aligned_cols=112 Identities=20% Similarity=0.290 Sum_probs=99.8 Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272) Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272) ...++.+++|+|||.|..+..++....+.++|+|.++.++..+.......++.++-.++.+|+.+.| +++.||.+.+.. T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364) T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364) T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe Confidence 4568889999999999999999987778999999999999999998888888777778999999998 789999999999 Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272) +.+|.+ +...++++++++++|||+++..++... T Consensus 187 ~~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364) T KOG1269|consen 187 VVCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364) T ss_pred ecccCC--cHHHHHHHHhcccCCCceEEeHHHHHh Confidence 999995 558999999999999999998766643 No 198 >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] Probab=98.89 E-value=4.2e-08 Score=76.12 Aligned_cols=109 Identities=17% Similarity=0.246 Sum_probs=86.6 Q ss_pred CCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272) Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272) ......-+||||||+|..+.+|++. ++....++|++|...+..++.++.++. ++..++.|+...-..++.|+++.+ T Consensus 40 ~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfN 117 (209) T KOG3191|consen 40 KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFN 117 (209) T ss_pred hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEEC Confidence 3334678999999999999999988 667899999999999999999988875 688999998776655899999887 Q ss_pred chhhcc-------------------ChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 109 GMIEHV-------------------GHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 109 ~~~~~~-------------------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ....-- +.+-...++..+-.+|.|.|.+++... T Consensus 118 PPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209) T KOG3191|consen 118 PPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209) T ss_pred CCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh Confidence 643211 123346688888899999999998543 No 199 >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] Probab=98.86 E-value=2.1e-08 Score=83.39 Aligned_cols=87 Identities=17% Similarity=0.275 Sum_probs=75.5 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272) ..++.+++..++.+++.|||||+|.|.++..|+++ +.+|+++|+++.+++..++... ..++++++++|+...+.+. T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~ 92 (259) T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPS 92 (259) T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchh Confidence 44788999999999999999999999999999997 7789999999999999988865 2368999999999988444 Q ss_pred --CccEEEEechh Q 024096 101 --KYDRIISCGMI 111 (272) Q Consensus 101 --~fD~V~~~~~~ 111 (272) .++.|+++-.. T Consensus 93 l~~~~~vVaNlPY 105 (259) T COG0030 93 LAQPYKVVANLPY 105 (259) T ss_pred hcCCCEEEEcCCC Confidence 78999987653 No 200 >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] Probab=98.84 E-value=2.4e-08 Score=82.23 Aligned_cols=90 Identities=18% Similarity=0.303 Sum_probs=77.6 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272) ..++.+++..++++++.|||+|.|+|.++..|.+. +++|+++|+++.++....++........+.++.++|+...+. . T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P 122 (315) T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-P 122 (315) T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-c Confidence 34578889999999999999999999999999997 899999999999999999988766555789999999988762 4 Q ss_pred CccEEEEechhh Q 024096 101 KYDRIISCGMIE 112 (272) Q Consensus 101 ~fD~V~~~~~~~ 112 (272) .||.++++.... T Consensus 123 ~fd~cVsNlPyq 134 (315) T KOG0820|consen 123 RFDGCVSNLPYQ 134 (315) T ss_pred ccceeeccCCcc Confidence 799999865443 No 201 >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. Probab=98.83 E-value=2.4e-07 Score=77.79 Aligned_cols=143 Identities=21% Similarity=0.248 Sum_probs=99.5 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--------------------------------- Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA--------------------------------- 80 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~--------------------------------- 80 (272) ...+||--|||.|.++..+|.. |..+.|.|.|--|+-..+-.+... T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv 134 (270) T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV 134 (270) T ss_pred CccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc Confidence 4579999999999999999997 889999999998865555433210 Q ss_pred ------CCCCCeEEEEcccCCCC-CC---CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCcccc Q 024096 81 ------GLQDHIRFYLCDYRQLP-KA---NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDE 150 (272) Q Consensus 81 ------g~~~~i~~~~~d~~~~~-~~---~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~ 150 (272) ..+.++....||+.++- .+ ++||+|++.+-+... +++.++++.|.++|||||+.+= ...-.+.. T Consensus 135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WIN----~GPLlyh~ 208 (270) T PF07942_consen 135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWIN----FGPLLYHF 208 (270) T ss_pred CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEEe----cCCccccC Confidence 11346788888988876 33 699999999888876 7789999999999999996652 11111110 Q ss_pred ccCcchhhhhcccC-CCCCCCHHHHHHHhhcCCCcEEEEEEe Q 024096 151 YRLSPGFIKEYIFP-GGCLPSLGRVTSAMTSSSGLCVEHLEN 191 (272) Q Consensus 151 ~~~~~~~~~~~~~p-~~~~~~~~~~~~~l~~~~Gf~v~~~~~ 191 (272) .. . .... ..--.+.+++. .+.+..||+++..+. T Consensus 209 ~~-~------~~~~~~sveLs~eEi~-~l~~~~GF~~~~~~~ 242 (270) T PF07942_consen 209 EP-M------SIPNEMSVELSLEEIK-ELIEKLGFEIEKEES 242 (270) T ss_pred CC-C------CCCCCcccCCCHHHHH-HHHHHCCCEEEEEEE Confidence 00 0 0000 01124677777 456669999977655 No 202 >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity Probab=98.82 E-value=2e-09 Score=95.95 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=88.4 Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCC--C--CCCEEEEECCCchHHHHHHHHccCCEEEEE---cCCHHHHHHHHHHHHHcC Q 024096 9 KSEHEDLEVGQMRKVSVLIEKARV--S--KGQEVLDIGCGWGTLAIEIVKQTGCKYTGI---TLSEEQLKYAEIKVREAG 81 (272) Q Consensus 9 ~~~~~~l~~aq~~~~~~l~~~l~~--~--~~~~vLDiG~G~G~~~~~l~~~~~~~v~gv---d~s~~~~~~a~~~~~~~g 81 (272) ..+...+...-...++.|.+.++. . .-..+||+|||.|+++.+|.++ +..+..+ |..+.+++.|.++ | T Consensus 88 Pgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleR----G 162 (506) T PF03141_consen 88 PGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALER----G 162 (506) T ss_pred CCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhc----C Confidence 344445555556667777777665 3 3368999999999999999987 5443333 3344566666655 5 Q ss_pred CCCCeEEEEcccCCCC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC Q 024096 82 LQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 82 ~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272) ++.-+ -..-...+| +++.||+|.|..++..+...+ .-++-++.|+|+|||+++++..... T Consensus 163 vpa~~--~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506) T PF03141_consen 163 VPAMI--GVLGSQRLPFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506) T ss_pred cchhh--hhhccccccCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCccc Confidence 54211 122346788 889999999998887764332 4588899999999999999766544 No 203 >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] Probab=98.80 E-value=5.2e-08 Score=79.04 Aligned_cols=97 Identities=22% Similarity=0.327 Sum_probs=84.2 Q ss_pred CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC-ccEEEEechhh Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK-YDRIISCGMIE 112 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~-fD~V~~~~~~~ 112 (272) +.+++|||+|.|-.++.+|-. ++.+++-+|....-+...+......+++ |++++++.++++..... ||+|++..+ T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vtsRAv-- 144 (215) T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTSRAV-- 144 (215) T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEeehc-- Confidence 589999999999999998844 7889999999999999999999999985 89999999999985444 999999754 Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEE Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .++..+.+-+..++|+||.+++ T Consensus 145 ----a~L~~l~e~~~pllk~~g~~~~ 166 (215) T COG0357 145 ----ASLNVLLELCLPLLKVGGGFLA 166 (215) T ss_pred ----cchHHHHHHHHHhcccCCcchh Confidence 3446788889999999998865 No 204 >COG2520 Predicted methyltransferase [General function prediction only] Probab=98.80 E-value=3.6e-08 Score=85.24 Aligned_cols=106 Identities=24% Similarity=0.304 Sum_probs=90.5 Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC-CCccEEEEechh Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA-NKYDRIISCGMI 111 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~-~~fD~V~~~~~~ 111 (272) .+|.+|||+-+|.|.+++.+|.....+|+++|++|..++..+++++.|++.+.+..+++|.....+. ..+|.|+....- T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341) T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341) T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC Confidence 3599999999999999999999733459999999999999999999999988899999999998854 889999986432 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCC Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272) ....++....+.+++||.+.+.+.... T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341) T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPE 293 (341) T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccch Confidence 235788888888999999998766643 No 205 >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] Probab=98.80 E-value=2.1e-07 Score=73.53 Aligned_cols=116 Identities=17% Similarity=0.186 Sum_probs=89.0 Q ss_pred HHHHHHcCC--CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---- Q 024096 24 SVLIEKARV--SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272) Q Consensus 24 ~~l~~~l~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272) +.+.+.+.. -.|.++||+-+|+|.++...+++....++.+|.+...+...++|++..++..+.+++..|..... T Consensus 31 EalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~ 110 (187) T COG0742 31 EALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG 110 (187) T ss_pred HHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC Confidence 344555543 46889999999999999999998667999999999999999999999998789999999987542 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHH--HHhcCccCcEEEEEe Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGC--CESLLATHGLLVLQF 140 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~i~~ 140 (272) ..+.||+|+....++. ..-+....+.. -..+|+|+|.+++.. T Consensus 111 ~~~~FDlVflDPPy~~-~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187) T COG0742 111 TREPFDLVFLDPPYAK-GLLDKELALLLLEENGWLKPGALIVVEH 154 (187) T ss_pred CCCcccEEEeCCCCcc-chhhHHHHHHHHHhcCCcCCCcEEEEEe Confidence 2235999999988772 11111222222 457899999999853 No 206 >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... Probab=98.79 E-value=4e-08 Score=79.68 Aligned_cols=119 Identities=18% Similarity=0.188 Sum_probs=76.9 Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHH-------HcCC-CCCeE Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVR-------EAGL-QDHIR 87 (272) Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~-------~~g~-~~~i~ 87 (272) +.....+..+++.+++.+++..+|+|||.|....+.+...++ +++|+|+.+...+.|+...+ ..|. ..+++ T Consensus 25 Ei~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205) T PF08123_consen 25 EISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205) T ss_dssp GCHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE T ss_pred ecCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce Confidence 344456677889999999999999999999998888876555 59999999999888776443 2233 34688 Q ss_pred EEEcccCCCC--C--CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 88 FYLCDYRQLP--K--ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 88 ~~~~d~~~~~--~--~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) +.++|+.+.+ . -...|+|++++... + ++....+.+....||+|.+++- T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs 156 (205) T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIIS 156 (205) T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEE T ss_pred eeccCccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEE Confidence 8999987754 1 14579999987643 2 4455666777888999988764 No 207 >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] Probab=98.79 E-value=1.1e-07 Score=76.79 Aligned_cols=106 Identities=15% Similarity=0.187 Sum_probs=88.8 Q ss_pred CCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCcc Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKYD 103 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~fD 103 (272) ..+.++||||.=+|..+..+|.. .+.+|+++|+++...+.+.+..+..|...+|.+++++..+.- ..+.|| T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237) T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237) T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee Confidence 35679999999999999888887 568999999999999999999999999999999999976632 357899 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) .++.. |.- .+...+.+++.+++|+||.+++..... T Consensus 152 faFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~ 186 (237) T KOG1663|consen 152 FAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLW 186 (237) T ss_pred EEEEc----cch-HHHHHHHHHHHhhcccccEEEEecccc Confidence 99974 442 234588999999999999999865443 No 208 >TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). Probab=98.78 E-value=1e-07 Score=78.55 Aligned_cols=102 Identities=18% Similarity=0.203 Sum_probs=67.8 Q ss_pred HHHHHHHHHHcCC-CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeE-EEEcccCCCC Q 024096 20 MRKVSVLIEKARV-SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIR-FYLCDYRQLP 97 (272) Q Consensus 20 ~~~~~~l~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~-~~~~d~~~~~ 97 (272) ..++..+++.+++ .++.+|||+|||+|.++..+++....+|+++|+++.++.... +.+ .++. +...|+.... T Consensus 60 ~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l---~~~---~~v~~~~~~ni~~~~ 133 (228) T TIGR00478 60 GEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL---RQD---ERVKVLERTNIRYVT 133 (228) T ss_pred HHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH---hcC---CCeeEeecCCcccCC Confidence 3455677777765 477899999999999999999974458999999998776621 111 1322 3333444332 Q ss_pred -----C-CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 98 -----K-ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 98 -----~-~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) + -..+|++++.. ...+..+...|+| |.+++ T Consensus 134 ~~~~~~d~~~~DvsfiS~----------~~~l~~i~~~l~~-~~~~~ 169 (228) T TIGR00478 134 PADIFPDFATFDVSFISL----------ISILPELDLLLNP-NDLTL 169 (228) T ss_pred HhHcCCCceeeeEEEeeh----------HhHHHHHHHHhCc-CeEEE Confidence 1 12566655532 3467888899999 77665 No 209 >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] Probab=98.78 E-value=1e-07 Score=80.92 Aligned_cols=103 Identities=25% Similarity=0.360 Sum_probs=83.9 Q ss_pred CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC--C-CCCeEEEEcccCCCC--CCCCccEEEEec Q 024096 36 QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG--L-QDHIRFYLCDYRQLP--KANKYDRIISCG 109 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g--~-~~~i~~~~~d~~~~~--~~~~fD~V~~~~ 109 (272) .+||-||-|.|+.++.+.+. .-.+++.+|+++..++.+++.+.... . .++++++..|..+.- ..++||+|++.. T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282) T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282) T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC Confidence 69999999999999999998 45799999999999999999886432 2 368999999987765 335899999865 Q ss_pred hhhccCh-h--hHHHHHHHHHhcCccCcEEEEE Q 024096 110 MIEHVGH-D--YMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 110 ~~~~~~~-~--~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .-. .+. + .-..+++.|.+.|+++|.++.. T Consensus 158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282) T COG0421 158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282) T ss_pred CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe Confidence 433 222 0 1268999999999999999986 No 210 >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. Probab=98.77 E-value=2.5e-07 Score=81.53 Aligned_cols=95 Identities=25% Similarity=0.395 Sum_probs=68.6 Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272) Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272) ....+++.+++.++..++ +|||+-||.|.++..+|+. ..+|+|+|+++.+++.|+++++.+++. +++|+.++.+++. T Consensus 181 ~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~~ 257 (352) T PF05958_consen 181 QNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDFA 257 (352) T ss_dssp HHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCC T ss_pred HHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccchh Confidence 344556777888887666 8999999999999999986 679999999999999999999999984 8999998765542 Q ss_pred -----------------CCCCccEEEEechhhccC Q 024096 98 -----------------KANKYDRIISCGMIEHVG 115 (272) Q Consensus 98 -----------------~~~~fD~V~~~~~~~~~~ 115 (272) ....+|+|+....=.-+. T Consensus 258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352) T PF05958_consen 258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352) T ss_dssp CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC T ss_pred HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch Confidence 123689999877655553 No 211 >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] Probab=98.76 E-value=2.8e-08 Score=74.20 Aligned_cols=89 Identities=20% Similarity=0.338 Sum_probs=71.4 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272) +..+-+-++--.|.+++|+|||.|.++...+......|+|+|++|+.++.+++|+....+ ++.+.++|+.++. ..+. T Consensus 37 ~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~ 114 (185) T KOG3420|consen 37 LYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGI 114 (185) T ss_pred HHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCe Confidence 344445555457899999999999999665543345799999999999999999988765 5799999999987 4578 Q ss_pred ccEEEEechhhc Q 024096 102 YDRIISCGMIEH 113 (272) Q Consensus 102 fD~V~~~~~~~~ 113 (272) ||.++.+..+.. T Consensus 115 fDtaviNppFGT 126 (185) T KOG3420|consen 115 FDTAVINPPFGT 126 (185) T ss_pred EeeEEecCCCCc Confidence 999999987653 No 212 >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. Probab=98.75 E-value=1.6e-08 Score=78.50 Aligned_cols=74 Identities=27% Similarity=0.384 Sum_probs=57.1 Q ss_pred CEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC---CC-CccEEEEech Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK---AN-KYDRIISCGM 110 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~---~~-~fD~V~~~~~ 110 (272) ..|+|+.||.|+.++.+|+. ..+|+++|+++..++.++.|++-.|+.++|.++++|+.++.. .. .+|+|++... T Consensus 1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPP 78 (163) T PF09445_consen 1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPP 78 (163) T ss_dssp SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--- T ss_pred CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCC Confidence 37999999999999999997 679999999999999999999999988899999999887651 12 2899998764 No 213 >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation Probab=98.73 E-value=2.5e-07 Score=78.71 Aligned_cols=124 Identities=22% Similarity=0.178 Sum_probs=83.7 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272) ..+..+..+++.....+|||+|||+|..+..+.+. . -.+++++|.|+.+.+.++..++................+..+ T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274) T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274) T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc Confidence 33455555555456679999999999876655554 2 358999999999999999877654321111111111111112 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272) ....|+|++.+++..++++....+++++.+.+.+ .+++.+...+.. T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274) T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274) T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH Confidence 2334999999999999887788899999887766 777766665443 No 214 >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... Probab=98.72 E-value=8.7e-08 Score=80.21 Aligned_cols=108 Identities=28% Similarity=0.322 Sum_probs=81.7 Q ss_pred CCCCEEEEECCCchHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCC---CCCeEEEEcccCCCC--CCC-CccEE Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGL---QDHIRFYLCDYRQLP--KAN-KYDRI 105 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~---~~~i~~~~~d~~~~~--~~~-~fD~V 105 (272) +...+||-||-|.|..+..+.+.+ ..+++.+|+++..++.+++.+..... .++++++.+|....- ..+ +||+| T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246) T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246) T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE Confidence 357899999999999999999873 57999999999999999998764321 368999999986654 234 89999 Q ss_pred EEechhhccChh--hHHHHHHHHHhcCccCcEEEEEe Q 024096 106 ISCGMIEHVGHD--YMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 106 ~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ++...-...+.. .-.++++.+.+.|+|||.+++.. T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246) T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246) T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc Confidence 986543222111 12689999999999999999865 No 215 >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional Probab=98.72 E-value=5.2e-08 Score=83.13 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=73.5 Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-- Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272) Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272) +++.+++.+.+.++..+||.+||.|+.+..+++.. ..+|+|+|.++.+++.+++++.. .++++++++|+.++. T Consensus 7 ll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~ 83 (296) T PRK00050 7 LLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEV 83 (296) T ss_pred cHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHH Confidence 35778888888899999999999999999999883 57999999999999999988754 358999999999876 Q ss_pred -CC--CCccEEEEechh Q 024096 98 -KA--NKYDRIISCGMI 111 (272) Q Consensus 98 -~~--~~fD~V~~~~~~ 111 (272) +. .++|.|+....+ T Consensus 84 l~~~~~~vDgIl~DLGv 100 (296) T PRK00050 84 LAEGLGKVDGILLDLGV 100 (296) T ss_pred HHcCCCccCEEEECCCc Confidence 22 279999987543 No 216 >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A. Probab=98.70 E-value=2e-07 Score=77.76 Aligned_cols=166 Identities=12% Similarity=0.085 Sum_probs=98.0 Q ss_pred HHHHHHHHHHHHHHcCCC-CCCEEEEECCC--chHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE Q 024096 16 EVGQMRKVSVLIEKARVS-KGQEVLDIGCG--WGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272) Q Consensus 16 ~~aq~~~~~~l~~~l~~~-~~~~vLDiG~G--~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272) ..+.+..+.+.++.+.-. .-...|||||| +-.....++++ ++++|+.+|.+|-.+..++..+..+.- .+..+++ T Consensus 49 ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~ 127 (267) T PF04672_consen 49 ARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQ 127 (267) T ss_dssp HHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE T ss_pred HHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEe Confidence 355566666667766555 44799999999 44466777776 899999999999999999998876531 2489999 Q ss_pred cccCCCC---C----CCCcc-----EEEEechhhccCh-hhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchh Q 024096 91 CDYRQLP---K----ANKYD-----RIISCGMIEHVGH-DYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGF 157 (272) Q Consensus 91 ~d~~~~~---~----~~~fD-----~V~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~ 157 (272) +|+.+.. . .+-+| .|+...++||+++ +++..+++.+.+.|.||.+|+++..+.... .......... T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~-p~~~~~~~~~ 206 (267) T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA-PERAEALEAV 206 (267) T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS-HHHHHHHHHH T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC-HHHHHHHHHH Confidence 9997754 1 12333 6788899999987 688999999999999999999988875332 1111111111 Q ss_pred hhhcccCCCCCCCHHHHHHHhhcCCCcEEE Q 024096 158 IKEYIFPGGCLPSLGRVTSAMTSSSGLCVE 187 (272) Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~ 187 (272) ...- .....+.+.+++. .+. .||+++ T Consensus 207 ~~~~-~~~~~~Rs~~ei~-~~f--~g~elv 232 (267) T PF04672_consen 207 YAQA-GSPGRPRSREEIA-AFF--DGLELV 232 (267) T ss_dssp HHHC-CS----B-HHHHH-HCC--TTSEE- T ss_pred HHcC-CCCceecCHHHHH-HHc--CCCccC Confidence 1111 2223455677776 444 488765 No 217 >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. Probab=98.67 E-value=9.5e-07 Score=71.67 Aligned_cols=98 Identities=28% Similarity=0.368 Sum_probs=73.3 Q ss_pred EEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CCCCCCccEEEEechhhccC Q 024096 38 VLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LPKANKYDRIISCGMIEHVG 115 (272) Q Consensus 38 vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~~~~~fD~V~~~~~~~~~~ 115 (272) |.||||-.|.+...|.+. .-.+++++|+++..++.|++++...|+.++++++.+|..+ +++.+..|.|+..++-- T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG--- 77 (205) T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGG--- 77 (205) T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-H--- T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCH--- Confidence 689999999999999998 3347999999999999999999999999999999999654 44444579998876543 Q ss_pred hhhHHHHHHHHHhcCccCcEEEEE Q 024096 116 HDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 116 ~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .-...++++....++....++++ T Consensus 78 -~lI~~ILe~~~~~~~~~~~lILq 100 (205) T PF04816_consen 78 -ELIIEILEAGPEKLSSAKRLILQ 100 (205) T ss_dssp -HHHHHHHHHTGGGGTT--EEEEE T ss_pred -HHHHHHHHhhHHHhccCCeEEEe Confidence 44578888888888777788874 No 218 >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. Probab=98.67 E-value=3.9e-07 Score=80.56 Aligned_cols=99 Identities=15% Similarity=0.115 Sum_probs=83.2 Q ss_pred CCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEech Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGM 110 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~ 110 (272) +.+|||+.||+|..++.++.+ .+ .+|+++|+++..++.+++|++.++.. ++++.++|+..+. ...+||+|.... T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374) T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374) T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC- Confidence 469999999999999999987 33 58999999999999999999998874 6899999988765 236799999865 Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) + .. ...++..+.+.++++|.++++. T Consensus 123 f-Gs----~~~fld~al~~~~~~glL~vTa 147 (374) T TIGR00308 123 F-GT----PAPFVDSAIQASAERGLLLVTA 147 (374) T ss_pred C-CC----cHHHHHHHHHhcccCCEEEEEe Confidence 3 22 2478888899999999999963 No 219 >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). Probab=98.65 E-value=9e-07 Score=76.51 Aligned_cols=114 Identities=12% Similarity=0.165 Sum_probs=85.4 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCC- Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQL- 96 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~- 96 (272) ..|.+.+ .++..|+|+|||.|.-+..|.+. ...+++++|+|...++.+.+++.....+ -.+.-+++|+.+. T Consensus 68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l 145 (319) T TIGR03439 68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGL 145 (319) T ss_pred HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHH Confidence 4455554 46779999999999977766554 2468999999999999999988733333 1344488988663 Q ss_pred ---CC---CCCccEEEEec-hhhccChhhHHHHHHHHHh-cCccCcEEEEE Q 024096 97 ---PK---ANKYDRIISCG-MIEHVGHDYMEEFFGCCES-LLATHGLLVLQ 139 (272) Q Consensus 97 ---~~---~~~fD~V~~~~-~~~~~~~~~~~~~l~~~~~-~LkpgG~l~i~ 139 (272) +. .....+|+..+ ++.++++.+...+++++++ .|+|||.+++. T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319) T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319) T ss_pred hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe Confidence 21 23456666654 8899988888899999999 99999999884 No 220 >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional Probab=98.63 E-value=7.1e-07 Score=85.59 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=86.8 Q ss_pred HHHHHHcCC-CCCCEEEEECCCchHHHHHHHHc-----c--------------------------------------CCE Q 024096 24 SVLIEKARV-SKGQEVLDIGCGWGTLAIEIVKQ-----T--------------------------------------GCK 59 (272) Q Consensus 24 ~~l~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~-----~--------------------------------------~~~ 59 (272) ..|+...+. .++..++|.+||+|.+.+..+.. | ..+ T Consensus 179 aa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~ 258 (702) T PRK11783 179 AAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSK 258 (702) T ss_pred HHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCce Confidence 445555555 56789999999999999887652 1 136 Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-C--CCCccEEEEechhhcc-C-hhhHHHHHHHHHhcCc--- Q 024096 60 YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-K--ANKYDRIISCGMIEHV-G-HDYMEEFFGCCESLLA--- 131 (272) Q Consensus 60 v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~--~~~fD~V~~~~~~~~~-~-~~~~~~~l~~~~~~Lk--- 131 (272) ++|+|+++.+++.|++|+..+|+.+.+.+.++|+.+++ + .++||+|+++.....- + ..+...+.+.+.+.++ T Consensus 259 i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~ 338 (702) T PRK11783 259 FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQF 338 (702) T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhC Confidence 99999999999999999999999888999999998886 2 2579999999765432 2 1334455555544444 Q ss_pred cCcEEEEE Q 024096 132 THGLLVLQ 139 (272) Q Consensus 132 pgG~l~i~ 139 (272) +|+.+++. T Consensus 339 ~g~~~~ll 346 (702) T PRK11783 339 GGWNAALF 346 (702) T ss_pred CCCeEEEE Confidence 88888763 No 221 >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... Probab=98.62 E-value=4.1e-07 Score=77.75 Aligned_cols=125 Identities=19% Similarity=0.239 Sum_probs=96.1 Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272) Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272) |...-......+...++.+|||++++.|+-+..+++. ...++++.|+++..+...+.++++.|.. ++.....|.... T Consensus 70 Qd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~ 148 (283) T PF01189_consen 70 QDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKL 148 (283) T ss_dssp HHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHH T ss_pred cccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccc Confidence 3333344455667889999999999999999999988 2579999999999999999999999984 788888888776 Q ss_pred C---CCCCccEEEEech------hhccCh--------------hhHHHHHHHHHhcC----ccCcEEEEEeecCC Q 024096 97 P---KANKYDRIISCGM------IEHVGH--------------DYMEEFFGCCESLL----ATHGLLVLQFISAP 144 (272) Q Consensus 97 ~---~~~~fD~V~~~~~------~~~~~~--------------~~~~~~l~~~~~~L----kpgG~l~i~~~~~~ 144 (272) . ....||.|+.... +..-++ +-..++++++.+.+ ||||+++.++.+.. T Consensus 149 ~~~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~ 223 (283) T PF01189_consen 149 DPKKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS 223 (283) T ss_dssp HHHHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH T ss_pred cccccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH Confidence 3 3346999998642 221111 22356899999999 99999999877743 No 222 >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. Probab=98.60 E-value=4.8e-07 Score=78.61 Aligned_cols=119 Identities=21% Similarity=0.292 Sum_probs=83.1 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc--------cCCEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEccc Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--------TGCKYTGITLSEEQLKYAEIKVREAGLQD-HIRFYLCDY 93 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--------~~~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i~~~~~d~ 93 (272) .+.+++.+...++.+|+|.+||+|++...+.+. ...+++|+|+++..+..++.++...+... +..+..+|. T Consensus 35 ~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~ 114 (311) T PF02384_consen 35 VDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDS 114 (311) T ss_dssp HHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-T T ss_pred HHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccc Confidence 355666667788889999999999998887762 46799999999999999998876665532 346889997 Q ss_pred CCCC-C--CCCccEEEEechhhcc--Ch-----------------hhHHHHHHHHHhcCccCcEEEEEee Q 024096 94 RQLP-K--ANKYDRIISCGMIEHV--GH-----------------DYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 94 ~~~~-~--~~~fD~V~~~~~~~~~--~~-----------------~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ...+ . ...||+|+++..+-.. .. ..--.++..+.+.|++||++++..+ T Consensus 115 l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311) T PF02384_consen 115 LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311) T ss_dssp TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE T ss_pred ccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec Confidence 6655 2 4689999999866543 10 0112588999999999999876443 No 223 >PF13679 Methyltransf_32: Methyltransferase domain Probab=98.59 E-value=8.6e-07 Score=67.88 Aligned_cols=100 Identities=15% Similarity=0.262 Sum_probs=75.1 Q ss_pred CCCCCEEEEECCCchHHHHHHHH-----ccCCEEEEEcCCHHHHHHHHHHHHHcC--CCCCeEEEEcccCCCCCCCCccE Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVK-----QTGCKYTGITLSEEQLKYAEIKVREAG--LQDHIRFYLCDYRQLPKANKYDR 104 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~-----~~~~~v~gvd~s~~~~~~a~~~~~~~g--~~~~i~~~~~d~~~~~~~~~fD~ 104 (272) ..+..+|+|+|||.|.++..++. .++.+|+++|.++..++.+.++.+..+ +..++.+..++..+.......++ T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141) T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141) T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE Confidence 46778999999999999999999 678999999999999999999988877 44577788877766554567788 Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) ++...+--.+. ...++...+ |+-..++ T Consensus 103 ~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~ 129 (141) T PF13679_consen 103 LVGLHACGDLS----DRALRLFIR---PNARFLV 129 (141) T ss_pred EEEeecccchH----HHHHHHHHH---cCCCEEE Confidence 88764444332 345554444 5555444 No 224 >PRK00536 speE spermidine synthase; Provisional Probab=98.56 E-value=1e-06 Score=74.01 Aligned_cols=99 Identities=16% Similarity=0.014 Sum_probs=76.2 Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCCCCCCCccEEEEe Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA--GL-QDHIRFYLCDYRQLPKANKYDRIISC 108 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272) .+...+||=||.|-|+.++.+.+++ .+|+.+|+++..++.+++.+... ++ .++++++.. +.+. ..++||+|++. T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~-~~~~fDVIIvD 146 (262) T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDL-DIKKYDLIICL 146 (262) T ss_pred CCCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhc-cCCcCCEEEEc Confidence 3556899999999999999999985 49999999999999999955432 12 357777652 2111 23789999987 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) .. . .+.+.+.+.+.|+|||.++.+. T Consensus 147 s~----~---~~~fy~~~~~~L~~~Gi~v~Qs 171 (262) T PRK00536 147 QE----P---DIHKIDGLKRMLKEDGVFISVA 171 (262) T ss_pred CC----C---ChHHHHHHHHhcCCCcEEEECC Confidence 43 1 1678899999999999999853 No 225 >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... Probab=98.54 E-value=1.6e-07 Score=75.08 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=71.1 Q ss_pred HHHHHHHHHcC-CCC--CCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC Q 024096 21 RKVSVLIEKAR-VSK--GQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272) Q Consensus 21 ~~~~~l~~~l~-~~~--~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272) -++..+.++.+ +.+ +.+|||+||++|+++..+.++. ..+|+|+|+.+. ... .++.++++|+.+ T Consensus 7 ~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~ 74 (181) T PF01728_consen 7 FKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITN 74 (181) T ss_dssp HHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEE T ss_pred HHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccch Confidence 35677778877 554 4899999999999999999984 489999999875 111 356667777644 Q ss_pred CC---------C--CCCccEEEEechhhccCh---------hhHHHHHHHHHhcCccCcEEEEEeec Q 024096 96 LP---------K--ANKYDRIISCGMIEHVGH---------DYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 96 ~~---------~--~~~fD~V~~~~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) .. . ...+|+|++..+....++ +-....+.-+...|+|||.+++-.+. T Consensus 75 ~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181) T PF01728_consen 75 PENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181) T ss_dssp EEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS T ss_pred hhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc Confidence 21 1 268999999874332221 11233445556789999999885544 No 226 >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] Probab=98.53 E-value=2.6e-06 Score=74.41 Aligned_cols=116 Identities=25% Similarity=0.331 Sum_probs=90.8 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cC--------------------------------C-------EEEEE Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TG--------------------------------C-------KYTGI 63 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~--------------------------------~-------~v~gv 63 (272) ..|+..-+..++..++|--||+|.+.+..|.. .+ + .++|+ T Consensus 181 aAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~ 260 (381) T COG0116 181 AAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGS 260 (381) T ss_pred HHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEe Confidence 45566666778889999999999999988775 21 1 37799 Q ss_pred cCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC-CCccEEEEechhh-ccChh-----hHHHHHHHHHhcCccCcEE Q 024096 64 TLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA-NKYDRIISCGMIE-HVGHD-----YMEEFFGCCESLLATHGLL 136 (272) Q Consensus 64 d~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~-~~fD~V~~~~~~~-~~~~~-----~~~~~l~~~~~~LkpgG~l 136 (272) |+++.+++.|+.|++..|+.+.|+|.++|+..+.++ +.+|+|+|+...- -++.+ -...+.+.+.+.++--++. T Consensus 261 Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~ 340 (381) T COG0116 261 DIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRY 340 (381) T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceE Confidence 999999999999999999999999999999999855 8999999997532 12222 1234556666777777788 Q ss_pred EEE Q 024096 137 VLQ 139 (272) Q Consensus 137 ~i~ 139 (272) +++ T Consensus 341 v~t 343 (381) T COG0116 341 VFT 343 (381) T ss_pred EEE Confidence 774 No 227 >KOG1331 consensus Predicted methyltransferase [General function prediction only] Probab=98.53 E-value=2.7e-08 Score=82.69 Aligned_cols=101 Identities=23% Similarity=0.287 Sum_probs=82.7 Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272) ..+..++|+|||.|-... ..+.+.++|.|++...+..+++. | ......+|+..+| .+.+||.+++..++ T Consensus 44 ~~gsv~~d~gCGngky~~---~~p~~~~ig~D~c~~l~~~ak~~----~---~~~~~~ad~l~~p~~~~s~d~~lsiavi 113 (293) T KOG1331|consen 44 PTGSVGLDVGCGNGKYLG---VNPLCLIIGCDLCTGLLGGAKRS----G---GDNVCRADALKLPFREESFDAALSIAVI 113 (293) T ss_pred CCcceeeecccCCcccCc---CCCcceeeecchhhhhccccccC----C---CceeehhhhhcCCCCCCccccchhhhhh Confidence 458899999999986643 23678899999999888887754 1 2268899999999 77899999999999 Q ss_pred hccChhh-HHHHHHHHHhcCccCcEEEEEeecC Q 024096 112 EHVGHDY-MEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 112 ~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) ||+.... ...+++++.+.|+|||...+..+.. T Consensus 114 hhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293) T KOG1331|consen 114 HHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293) T ss_pred hhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh Confidence 9997654 4679999999999999988866554 No 228 >COG4076 Predicted RNA methylase [General function prediction only] Probab=98.51 E-value=2e-07 Score=72.76 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=81.5 Q ss_pred CEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhccC Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVG 115 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~ 115 (272) +.+.|+|+|+|.++...+.. ..+|++++.+|...+.|.+++...|. .+++++.+|+.+... +..|+|+|...-..+- T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi 110 (252) T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF-ENADVVICEMLDTALI 110 (252) T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc-cccceeHHHHhhHHhh Confidence 68999999999999988775 66999999999999999999877776 589999999999885 6789998853322233 Q ss_pred hhhHHHHHHHHHhcCccCcEEEE Q 024096 116 HDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 116 ~~~~~~~l~~~~~~LkpgG~l~i 138 (272) ++..-.+++.+...||.++.++= T Consensus 111 ~E~qVpV~n~vleFLr~d~tiiP 133 (252) T COG4076 111 EEKQVPVINAVLEFLRYDPTIIP 133 (252) T ss_pred cccccHHHHHHHHHhhcCCcccc Confidence 34455678888889999998874 No 229 >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... Probab=98.44 E-value=4.1e-06 Score=67.73 Aligned_cols=106 Identities=17% Similarity=0.124 Sum_probs=77.3 Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCC Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANK 101 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~ 101 (272) +.+.+++|.+||-+|..+|....+++.- +...|+++|.|+......-..+++. .|+-.+.+|+.... .-+. T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~ 143 (229) T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEM 143 (229) T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS-- T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccc Confidence 4466889999999999999999999987 4679999999997766665555555 58999999987654 3368 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) .|+|++.-. .+ +...-++.++...||+||.+++.. T Consensus 144 VDvI~~DVa---Qp-~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229) T PF01269_consen 144 VDVIFQDVA---QP-DQARIAALNARHFLKPGGHLIISI 178 (229) T ss_dssp EEEEEEE-S---ST-THHHHHHHHHHHHEEEEEEEEEEE T ss_pred ccEEEecCC---Ch-HHHHHHHHHHHhhccCCcEEEEEE Confidence 999998632 11 345678888889999999999853 No 230 >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... Probab=98.44 E-value=1.5e-06 Score=73.58 Aligned_cols=105 Identities=15% Similarity=0.200 Sum_probs=80.6 Q ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC Q 024096 19 QMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK 98 (272) Q Consensus 19 q~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~ 98 (272) ..+..+.+++.+++.++..|||+|+|.|.++..|++. +.+++++|+++...+..++... ..++++++.+|+.++.. T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~ 90 (262) T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDL 90 (262) T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCG T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhcccc Confidence 3456788999999889999999999999999999987 5899999999999999888765 23689999999999872 Q ss_pred C----CCccEEEEechhhccChhhHHHHHHHHHhcCcc Q 024096 99 A----NKYDRIISCGMIEHVGHDYMEEFFGCCESLLAT 132 (272) Q Consensus 99 ~----~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkp 132 (272) . +.-..|+++-.. +++ ..++.++...-+. T Consensus 91 ~~~~~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262) T PF00398_consen 91 YDLLKNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262) T ss_dssp GGHCSSSEEEEEEEETG-TGH----HHHHHHHHHHGGG T ss_pred HHhhcCCceEEEEEecc-cch----HHHHHHHhhcccc Confidence 2 356677776554 442 4566666553333 No 231 >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein. Probab=98.43 E-value=2.5e-06 Score=68.68 Aligned_cols=120 Identities=19% Similarity=0.226 Sum_probs=84.2 Q ss_pred CEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEechh Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISCGMI 111 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~~~~ 111 (272) .++|||||=+.....- ...-..|+.||+++ ..-.+.+.|+.+.| +.++||+|.+..++ T Consensus 53 lrlLEVGals~~N~~s--~~~~fdvt~IDLns----------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVL 114 (219) T PF11968_consen 53 LRLLEVGALSTDNACS--TSGWFDVTRIDLNS----------------QHPGILQQDFMERPLPKNESEKFDVISLSLVL 114 (219) T ss_pred ceEEeecccCCCCccc--ccCceeeEEeecCC----------------CCCCceeeccccCCCCCCcccceeEEEEEEEE Confidence 6999999965443322 12234699999976 13467888998876 35799999999999 Q ss_pred hccChh-hHHHHHHHHHhcCccCcE-----EEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcE Q 024096 112 EHVGHD-YMEEFFGCCESLLATHGL-----LVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLC 185 (272) Q Consensus 112 ~~~~~~-~~~~~l~~~~~~LkpgG~-----l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~ 185 (272) ..+|+. ..-+.++++.+.|+|+|. +++..+ ... ..+..+.+.+.+. .+.+.-||. T Consensus 115 NfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP---~~C---------------v~NSRy~~~~~l~-~im~~LGf~ 175 (219) T PF11968_consen 115 NFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLP---LPC---------------VTNSRYMTEERLR-EIMESLGFT 175 (219) T ss_pred eeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeC---chH---------------hhcccccCHHHHH-HHHHhCCcE Confidence 999854 567899999999999999 777422 211 0123344556665 445569998 Q ss_pred EEEEEec Q 024096 186 VEHLENI 192 (272) Q Consensus 186 v~~~~~~ 192 (272) .+..+.. T Consensus 176 ~~~~~~~ 182 (219) T PF11968_consen 176 RVKYKKS 182 (219) T ss_pred EEEEEec Confidence 8776553 No 232 >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. Probab=98.41 E-value=2.6e-06 Score=71.79 Aligned_cols=104 Identities=23% Similarity=0.324 Sum_probs=66.6 Q ss_pred CCEEEEECCCchHHH-HHHHHc--cCCEEEEEcCCHHHHHHHHHHHH-HcCCCCCeEEEEcccCCCC-CCCCccEEEEec Q 024096 35 GQEVLDIGCGWGTLA-IEIVKQ--TGCKYTGITLSEEQLKYAEIKVR-EAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272) Q Consensus 35 ~~~vLDiG~G~G~~~-~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~-~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272) +.+|+=||||.=-++ +.+++. .+..++++|+++..++.+++..+ ..|+..++.|+++|..+.. .-..||+|+... T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276) T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276) T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh Confidence 359999999976655 445544 46789999999999999999887 5677789999999998776 347899999876 Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ... +..++...+++++.+.++||..+++- T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276) T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276) T ss_dssp T-S-----SHHHHHHHHHHHS-TTSEEEEE T ss_pred hcc-cccchHHHHHHHHHhhCCCCcEEEEe Confidence 544 22245689999999999999999874 No 233 >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] Probab=98.39 E-value=4.5e-06 Score=66.69 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=82.6 Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEec Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCG 109 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~ 109 (272) ..|.+||++|-|.|.....+.+++..+=+.+|..|......++..-. -.++|.++.+-.++.. +++.||-|+-.. T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g~WeDvl~~L~d~~FDGI~yDT 177 (271) T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEGRWEDVLNTLPDKHFDGIYYDT 177 (271) T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEecchHhhhccccccCcceeEeec Confidence 67889999999999999988887555667789999988887765311 1357888888877754 678899999876 Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) --++. ++...+.+.+.++|||+|++-+ T Consensus 178 y~e~y--Edl~~~hqh~~rLLkP~gv~Sy 204 (271) T KOG1709|consen 178 YSELY--EDLRHFHQHVVRLLKPEGVFSY 204 (271) T ss_pred hhhHH--HHHHHHHHHHhhhcCCCceEEE Confidence 65777 7889999999999999999876 No 234 >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D. Probab=98.38 E-value=1.8e-07 Score=67.96 Aligned_cols=98 Identities=20% Similarity=0.185 Sum_probs=45.8 Q ss_pred EEECCCchHHHHHHHHc--cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechh Q 024096 39 LDIGCGWGTLAIEIVKQ--TG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMI 111 (272) Q Consensus 39 LDiG~G~G~~~~~l~~~--~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~ 111 (272) ||+|+..|..+..+++. .. .+++++|..+. .+..++.+++.++.++++++.++..+.- ..+++|+|+.... T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~- 78 (106) T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD- 78 (106) T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-- T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC- Confidence 69999999999888875 22 37999999985 3344445555566678999999986643 3479999999763 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) |-. +.....++.+...|+|||.+++.+ T Consensus 79 -H~~-~~~~~dl~~~~~~l~~ggviv~dD 105 (106) T PF13578_consen 79 -HSY-EAVLRDLENALPRLAPGGVIVFDD 105 (106) T ss_dssp ---H-HHHHHHHHHHGGGEEEEEEEEEE- T ss_pred -CCH-HHHHHHHHHHHHHcCCCeEEEEeC Confidence 221 345678899999999999999865 No 235 >COG3897 Predicted methyltransferase [General function prediction only] Probab=98.38 E-value=2.4e-06 Score=67.30 Aligned_cols=108 Identities=18% Similarity=0.281 Sum_probs=83.2 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272) +++.+.=..-.|++|||+|+|+|..++..++.....|+..|+.|.....++-|.+.+|. .+.+...|... .+..|| T Consensus 69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g--~~~~~D 144 (218) T COG3897 69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG--SPPAFD 144 (218) T ss_pred HHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC--CCccee Confidence 44444444557899999999999999988887556899999999999999999999885 68888888766 347899 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) +|+...++..-+ .-..++. +.+.|+..|..++ T Consensus 145 l~LagDlfy~~~--~a~~l~~-~~~~l~~~g~~vl 176 (218) T COG3897 145 LLLAGDLFYNHT--EADRLIP-WKDRLAEAGAAVL 176 (218) T ss_pred EEEeeceecCch--HHHHHHH-HHHHHHhCCCEEE Confidence 999999887653 2345666 6666666665554 No 236 >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=98.34 E-value=8.7e-06 Score=65.37 Aligned_cols=109 Identities=20% Similarity=0.202 Sum_probs=77.3 Q ss_pred HHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHcc--CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC- Q 024096 22 KVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQT--GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272) Q Consensus 22 ~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272) ++..|.++.. ++++..|+|+|+-+|+++..+++.. +..|+++|+.|- ....++.++++|+..-+ T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~------------~~~~~V~~iq~d~~~~~~ 99 (205) T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM------------KPIPGVIFLQGDITDEDT 99 (205) T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc------------ccCCCceEEeeeccCccH Confidence 3455666665 4688999999999999999999883 345999999772 12246999999998765 Q ss_pred --------CCCCccEEEEechh--------hccChhhH-HHHHHHHHhcCccCcEEEEEeec Q 024096 98 --------KANKYDRIISCGMI--------EHVGHDYM-EEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 98 --------~~~~fD~V~~~~~~--------~~~~~~~~-~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) ....+|+|+|...- +|.-...+ ...++-+..+|+|||.+++-.+- T Consensus 100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205) T COG0293 100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205) T ss_pred HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe Confidence 23457999986533 22211111 34566667899999999987665 No 237 >PRK10742 putative methyltransferase; Provisional Probab=98.34 E-value=2.7e-06 Score=70.25 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=76.3 Q ss_pred HHHHHHcCCCCCC--EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc------C--CCCCeEEEEccc Q 024096 24 SVLIEKARVSKGQ--EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA------G--LQDHIRFYLCDY 93 (272) Q Consensus 24 ~~l~~~l~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~------g--~~~~i~~~~~d~ 93 (272) +.+++.+++++|. +|||+-+|+|..++.++.. |++|+++|-++......++++... + +..+++++++|. T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da 154 (250) T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (250) T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH Confidence 6788888888888 9999999999999999997 889999999999999999888774 2 225789999998 Q ss_pred CCCC--CCCCccEEEEechhhcc Q 024096 94 RQLP--KANKYDRIISCGMIEHV 114 (272) Q Consensus 94 ~~~~--~~~~fD~V~~~~~~~~~ 114 (272) .+.. ..+.||+|+...++.|- T Consensus 155 ~~~L~~~~~~fDVVYlDPMfp~~ 177 (250) T PRK10742 155 LTALTDITPRPQVVYLDPMFPHK 177 (250) T ss_pred HHHHhhCCCCCcEEEECCCCCCC Confidence 7654 33579999999988874 No 238 >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] Probab=98.34 E-value=1.2e-07 Score=75.10 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=70.1 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272) .+.++||+|+|.|-.+..++.. -.+|++.|+|..|+...+.. + ..+... .+-...+-+||+|.|.+.+.- T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk----~----ynVl~~-~ew~~t~~k~dli~clNlLDR 181 (288) T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK----N----YNVLTE-IEWLQTDVKLDLILCLNLLDR 181 (288) T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc----C----Cceeee-hhhhhcCceeehHHHHHHHHh Confidence 3479999999999999988875 34799999999988877654 2 222211 111113357999999988876 Q ss_pred cChhhHHHHHHHHHhcCcc-CcEEEEE Q 024096 114 VGHDYMEEFFGCCESLLAT-HGLLVLQ 139 (272) Q Consensus 114 ~~~~~~~~~l~~~~~~Lkp-gG~l~i~ 139 (272) . .++-.+++.++.+|+| +|+++++ T Consensus 182 c--~~p~kLL~Di~~vl~psngrviva 206 (288) T KOG3987|consen 182 C--FDPFKLLEDIHLVLAPSNGRVIVA 206 (288) T ss_pred h--cChHHHHHHHHHHhccCCCcEEEE Confidence 5 4568999999999999 8998874 No 239 >KOG4058 consensus Uncharacterized conserved protein [Function unknown] Probab=98.33 E-value=5.3e-06 Score=62.31 Aligned_cols=123 Identities=15% Similarity=0.219 Sum_probs=94.1 Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL 96 (272) Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272) .|..+.+.++++.+.-.+..+.+|+|+|.|.+-...++..-...+|+|++|-.+.+++-..-..|+.+.+.|...|+.+. T Consensus 55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199) T KOG4058|consen 55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199) T ss_pred CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc Confidence 35566677788888877778999999999999988888633578999999999999999888889988999999999887 Q ss_pred CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 97 PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 97 ~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) .. ..|..|+...+-..+ ..+..++..-+..+.+++..-+..|. T Consensus 135 dl-~dy~~vviFgaes~m-----~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199) T KOG4058|consen 135 DL-RDYRNVVIFGAESVM-----PDLEDKLRTELPANTRVVACRFPLPT 177 (199) T ss_pred cc-cccceEEEeehHHHH-----hhhHHHHHhhCcCCCeEEEEecCCCc Confidence 62 335555554443333 45666677778888888875555444 No 240 >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=98.32 E-value=2.1e-05 Score=62.42 Aligned_cols=106 Identities=18% Similarity=0.160 Sum_probs=83.0 Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCc Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKY 102 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~f 102 (272) +.+++++|.+||=+|..+|....+++.- ....++++|.|+.........+++. +|+--+.+|+.... --+.. T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231) T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKV 146 (231) T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccc Confidence 4467889999999999999999999987 5578999999998877766666655 48888999987654 34679 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) |+|+..-+ -++...-+..++...||+||+++++. T Consensus 147 Dviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231) T COG1889 147 DVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAI 180 (231) T ss_pred cEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEE Confidence 99997521 11334567888899999999887743 No 241 >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] Probab=98.32 E-value=1.8e-05 Score=60.54 Aligned_cols=102 Identities=31% Similarity=0.436 Sum_probs=72.8 Q ss_pred EEEECCCchHHHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC--CC-CC-CCccEEEEechh Q 024096 38 VLDIGCGWGTLAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ--LP-KA-NKYDRIISCGMI 111 (272) Q Consensus 38 vLDiG~G~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~--~~-~~-~~fD~V~~~~~~ 111 (272) ++|+|||+|... .+..... ..++++|+++.++..++......+. ..+.+...|... .+ .. ..||++.+.... T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 129 (257) T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVISLLVL 129 (257) T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEeeeeeh Confidence 999999999976 3444322 4899999999999885554432111 116888888776 55 33 489999444444 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEeecCC Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272) ++.. ....+.++.+.++|+|.+++...... T Consensus 130 ~~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257) T COG0500 130 HLLP---PAKALRELLRVLKPGGRLVLSDLLRD 159 (257) T ss_pred hcCC---HHHHHHHHHHhcCCCcEEEEEeccCC Confidence 4442 67899999999999999998766543 No 242 >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] Probab=98.31 E-value=5.8e-06 Score=74.15 Aligned_cols=112 Identities=15% Similarity=0.215 Sum_probs=81.4 Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---C Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---K 98 (272) Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~ 98 (272) .+..+-+++.+..+..+||+.||+|.++..+++. -.+|+|+|++++.++.|+.++..+|+. |.+|+++-++++- . T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~ 448 (534) T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLL 448 (534) T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhc Confidence 4566778888999999999999999999999986 679999999999999999999999985 8999999555543 1 Q ss_pred C---CCccEEE-EechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 99 A---NKYDRII-SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~---~~fD~V~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) . ++=++|. +...=.-+ . ..+++.+.+.-++--.++++ T Consensus 449 ~~~~~~~~~v~iiDPpR~Gl--h--~~~ik~l~~~~~~~rlvyvS 489 (534) T KOG2187|consen 449 TPCCDSETLVAIIDPPRKGL--H--MKVIKALRAYKNPRRLVYVS 489 (534) T ss_pred ccCCCCCceEEEECCCcccc--c--HHHHHHHHhccCccceEEEE Confidence 1 2334333 33221111 1 24555555555566666664 No 243 >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. Probab=98.29 E-value=8.5e-06 Score=69.41 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=56.7 Q ss_pred HHHHHHHHHcCCCC-----CCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc-CCCCCeEEEEccc Q 024096 21 RKVSVLIEKARVSK-----GQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA-GLQDHIRFYLCDY 93 (272) Q Consensus 21 ~~~~~l~~~l~~~~-----~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~-g~~~~i~~~~~d~ 93 (272) +.+.++.+.+.... .-++||||||...+=-.|+.+ .+.+++|.|+++..++.|++++..+ ++.++|+++...- T Consensus 84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~ 163 (299) T PF05971_consen 84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKN 163 (299) T ss_dssp HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--S T ss_pred HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCC Confidence 44455656555322 458999999977654334434 8999999999999999999999999 8999999876642 Q ss_pred CC-----CC-CCCCccEEEEechhhccC Q 024096 94 RQ-----LP-KANKYDRIISCGMIEHVG 115 (272) Q Consensus 94 ~~-----~~-~~~~fD~V~~~~~~~~~~ 115 (272) .. +. ..+.||+.+|+..++.-. T Consensus 164 ~~~i~~~i~~~~e~~dftmCNPPFy~s~ 191 (299) T PF05971_consen 164 PDNIFDGIIQPNERFDFTMCNPPFYSSQ 191 (299) T ss_dssp T-SSTTTSTT--S-EEEEEE-----SS- T ss_pred ccccchhhhcccceeeEEecCCccccCh Confidence 22 11 346899999999988763 No 244 >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. Probab=98.26 E-value=1.2e-05 Score=74.90 Aligned_cols=79 Identities=18% Similarity=0.171 Sum_probs=58.7 Q ss_pred CCCEEEEECCCchHHHHHHHHc-c--------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------C Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-T--------GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------K 98 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~--------~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------~ 98 (272) .+.+|||.|||+|.+...++.. . ...++|+|+++..+..++.++...+. ..+.+.+.|..... . T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~ 109 (524) T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESY 109 (524) T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccccc Confidence 4569999999999999888765 2 15789999999999999998876651 23456666643321 2 Q ss_pred CCCccEEEEechhhc Q 024096 99 ANKYDRIISCGMIEH 113 (272) Q Consensus 99 ~~~fD~V~~~~~~~~ 113 (272) .+.||+|+++....- T Consensus 110 ~~~fD~IIgNPPy~~ 124 (524) T TIGR02987 110 LDLFDIVITNPPYGR 124 (524) T ss_pred cCcccEEEeCCCccc Confidence 358999999986653 No 245 >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional Probab=98.22 E-value=1.1e-05 Score=69.62 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=70.1 Q ss_pred HHHHHHHHcC--------CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc Q 024096 22 KVSVLIEKAR--------VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY 93 (272) Q Consensus 22 ~~~~l~~~l~--------~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~ 93 (272) ++..++..+. +.+|.++||+||++|+++..+.++ +.+|++||..+ +.. .+.. .++|....+|. T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~-l~~----~L~~---~~~V~h~~~d~ 261 (357) T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGP-MAQ----SLMD---TGQVEHLRADG 261 (357) T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechh-cCH----hhhC---CCCEEEEeccC Confidence 4555555544 358999999999999999999997 77999999654 221 1222 25899999987 Q ss_pred CCCCC-CCCccEEEEechhhccChhhHHHHHHHHHhcCccC Q 024096 94 RQLPK-ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH 133 (272) Q Consensus 94 ~~~~~-~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 133 (272) ....+ .+.+|.|+|.-+ +.+..+.+-+.++|..| T Consensus 262 fr~~p~~~~vDwvVcDmv------e~P~rva~lm~~Wl~~g 296 (357) T PRK11760 262 FKFRPPRKNVDWLVCDMV------EKPARVAELMAQWLVNG 296 (357) T ss_pred cccCCCCCCCCEEEEecc------cCHHHHHHHHHHHHhcC Confidence 66654 678999999643 23456667777777666 No 246 >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A. Probab=98.20 E-value=3.4e-05 Score=63.69 Aligned_cols=148 Identities=16% Similarity=0.221 Sum_probs=90.2 Q ss_pred HHHHHHcC--CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC Q 024096 24 SVLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272) Q Consensus 24 ~~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272) +.+++.+. +.+..+|+|||||.--++..+... ++..++|+|++..+++..+..+...+. ...+...|...-++.. T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~ 170 (251) T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKE 170 (251) T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTS T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCC Confidence 34444433 345789999999999998877766 678999999999999999999988876 4677777887777778 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhc Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTS 180 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~ 180 (272) ..|+....=+++.+........++-+.. ++ .-.++++.++..-. .+.. |...+...+.+.++. T Consensus 171 ~~DlaLllK~lp~le~q~~g~g~~ll~~-~~-~~~~vVSfPtrSL~-----gR~~----------gm~~~y~~~fe~~~~ 233 (251) T PF07091_consen 171 PADLALLLKTLPCLERQRRGAGLELLDA-LR-SPHVVVSFPTRSLG-----GRNK----------GMEQTYSAWFEALAA 233 (251) T ss_dssp EESEEEEET-HHHHHHHSTTHHHHHHHH-SC-ESEEEEEEES------------T----------THHHCHHHHHHHHCC T ss_pred CcchhhHHHHHHHHHHHhcchHHHHHHH-hC-CCeEEEeccccccc-----cCcc----------ccccCHHHHHHHhcc Confidence 8999999888887722211122322222 22 22455554442111 0001 122345556667777 Q ss_pred CCCcEEEEEE Q 024096 181 SSGLCVEHLE 190 (272) Q Consensus 181 ~~Gf~v~~~~ 190 (272) ..|..+.+.+ T Consensus 234 ~~~~~~~~~~ 243 (251) T PF07091_consen 234 ERGWIVDRLT 243 (251) T ss_dssp TTCEEEEEEE T ss_pred cCCceeeeee Confidence 7888865544 No 247 >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] Probab=98.17 E-value=0.00011 Score=59.24 Aligned_cols=109 Identities=21% Similarity=0.251 Sum_probs=87.4 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCC Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANK 101 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~ 101 (272) ..+.+.+. .+.++.||||-.+.+..++.+. +...+++.|+++..++.|.++...+++.+++++..+|....- .++. T Consensus 8 ~~va~~V~--~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~ 85 (226) T COG2384 8 TTVANLVK--QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDE 85 (226) T ss_pred HHHHHHHH--cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCC Confidence 33444433 4556999999999999999998 567899999999999999999999999999999999975443 5668 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) +|+|+..++-- .-...++++-.+.|+.=-++++ T Consensus 86 ~d~ivIAGMGG----~lI~~ILee~~~~l~~~~rlIL 118 (226) T COG2384 86 IDVIVIAGMGG----TLIREILEEGKEKLKGVERLIL 118 (226) T ss_pred cCEEEEeCCcH----HHHHHHHHHhhhhhcCcceEEE Confidence 99999876544 3456788888887776566776 No 248 >KOG3201 consensus Uncharacterized conserved protein [Function unknown] Probab=98.14 E-value=6.2e-06 Score=62.95 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=77.9 Q ss_pred HHHHHcCCCCCCEEEEECCCchH-HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCC--CCeEEEEcccCCCC--- Q 024096 25 VLIEKARVSKGQEVLDIGCGWGT-LAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQ--DHIRFYLCDYRQLP--- 97 (272) Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~-~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~--~~i~~~~~d~~~~~--- 97 (272) .+++.-..-.|.+|||+|.|--+ .+..+|.. +...|...|-++..++..++....+... .++.+..-+..... T Consensus 20 ~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~ 99 (201) T KOG3201|consen 20 TILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQ 99 (201) T ss_pred HHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHH Confidence 34444444467899999999544 44555555 7789999999999999988776555221 12322222222211 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ....||.|++..++..- +....+++.+.+.|+|.|+.++. T Consensus 100 eq~tFDiIlaADClFfd--E~h~sLvdtIk~lL~p~g~Al~f 139 (201) T KOG3201|consen 100 EQHTFDIILAADCLFFD--EHHESLVDTIKSLLRPSGRALLF 139 (201) T ss_pred hhCcccEEEeccchhHH--HHHHHHHHHHHHHhCcccceeEe Confidence 34689999999887654 55678999999999999997763 No 249 >TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. Probab=98.14 E-value=9.9e-06 Score=61.90 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=52.1 Q ss_pred EEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC Q 024096 37 EVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272) Q Consensus 37 ~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272) ++||+|||.|..+..+++. ++.+++++|+++.+.+.++++++.++++ ++.+++..+.+-+ T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~~~ 61 (143) T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGDRD 61 (143) T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeCCC Confidence 4899999999999999987 5568999999999999999999988875 5888888776543 No 250 >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] Probab=98.13 E-value=3e-05 Score=68.01 Aligned_cols=116 Identities=18% Similarity=0.184 Sum_probs=90.9 Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCcc Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYD 103 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD 103 (272) .+...+|.||||+++-.|+-+.++|.. ....|++.|.+...+.....++...|. .+..+...|..++| ...+|| T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~~fD 314 (460) T KOG1122|consen 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPGSFD 314 (460) T ss_pred ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCcccc Confidence 355679999999999999988888876 346899999999999999999999998 47888889988776 234899 Q ss_pred EEEEechhhc--cCh------------------hhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 104 RIISCGMIEH--VGH------------------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 104 ~V~~~~~~~~--~~~------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) .|.......- +.. .-..+++.....++++||+|+.++.+... T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~ 376 (460) T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV 376 (460) T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch Confidence 9986542221 000 12357888889999999999998877543 No 251 >TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. Probab=98.10 E-value=2.7e-05 Score=66.73 Aligned_cols=88 Identities=14% Similarity=0.220 Sum_probs=74.3 Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--- Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--- 97 (272) Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--- 97 (272) +++.+++.+...++..++|.-+|.|+-+..+++. ++.+|+|+|.++.+++.+++++... .+++.++++++.++. T Consensus 8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l 85 (305) T TIGR00006 8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHL 85 (305) T ss_pred hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHH Confidence 3577888888889999999999999999999987 5589999999999999999988654 358999999998865 Q ss_pred ---CCCCccEEEEechh Q 024096 98 ---KANKYDRIISCGMI 111 (272) Q Consensus 98 ---~~~~fD~V~~~~~~ 111 (272) ..+++|.|+....+ T Consensus 86 ~~~~~~~vDgIl~DLGv 102 (305) T TIGR00006 86 DELLVTKIDGILVDLGV 102 (305) T ss_pred HhcCCCcccEEEEeccC Confidence 22579999887544 No 252 >KOG2730 consensus Methylase [General function prediction only] Probab=98.09 E-value=1.8e-06 Score=69.21 Aligned_cols=76 Identities=24% Similarity=0.345 Sum_probs=63.9 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----CCCccEEEEe Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----ANKYDRIISC 108 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----~~~fD~V~~~ 108 (272) ....|+|.-||.|+.+++.+.. ++.|+++|++|.-+..|+.+++-.|++++|.|++||+.++-. -..+|+|+.. T Consensus 94 ~~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263) T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263) T ss_pred CcchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC Confidence 4568999999999999999886 889999999999999999999999999999999999987651 1235566655 Q ss_pred ch Q 024096 109 GM 110 (272) Q Consensus 109 ~~ 110 (272) .. T Consensus 173 pp 174 (263) T KOG2730|consen 173 PP 174 (263) T ss_pred CC Confidence 43 No 253 >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=98.08 E-value=4.3e-05 Score=62.35 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=81.4 Q ss_pred HHHHHHHHHcCC-CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCe-EEEEcccCCCC- Q 024096 21 RKVSVLIEKARV-SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHI-RFYLCDYRQLP- 97 (272) Q Consensus 21 ~~~~~l~~~l~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i-~~~~~d~~~~~- 97 (272) .++..+++...+ .++..|||+|+-||+++..+.++...+|+++|....++.+--++ .+++ .+...|+..+. T Consensus 65 ~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~ 138 (245) T COG1189 65 LKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTP 138 (245) T ss_pred HHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc------CCcEEEEecCChhhCCH Confidence 345666777665 46889999999999999999998556899999998888775443 1344 44555666655 Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) ..+..|++++.-++.-+ ..++..+..+++|++-++. T Consensus 139 ~~~~~~~d~~v~DvSFISL-----~~iLp~l~~l~~~~~~~v~ 176 (245) T COG1189 139 EDFTEKPDLIVIDVSFISL-----KLILPALLLLLKDGGDLVL 176 (245) T ss_pred HHcccCCCeEEEEeehhhH-----HHHHHHHHHhcCCCceEEE Confidence 23578899998766644 7899999999999998876 No 254 >PLN02668 indole-3-acetate carboxyl methyltransferase Probab=98.03 E-value=0.0054 Score=54.43 Aligned_cols=215 Identities=13% Similarity=0.139 Sum_probs=119.1 Q ss_pred CCEEEEECCCchHHHHHHHHc----------------cCCEEEEEcCCHHHHH-HHHHH--HHH-----------cCCC- Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ----------------TGCKYTGITLSEEQLK-YAEIK--VRE-----------AGLQ- 83 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~----------------~~~~v~gvd~s~~~~~-~a~~~--~~~-----------~g~~- 83 (272) ..+|+|+|||+|.++..+... +..+|..-|+-.+-.. ..+.. ... .+.. T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386) T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386) T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc Confidence 568999999999877655321 2356666666322111 11111 000 0100 Q ss_pred CCeEEEEcccCCCC-CCCCccEEEEechhhccCh------------------------------------hhHHHHHHHH Q 024096 84 DHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH------------------------------------DYMEEFFGCC 126 (272) Q Consensus 84 ~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~------------------------------------~~~~~~l~~~ 126 (272) --+..+.+.+-.-- |.++.++++|..++||++. +|+..+|+.= T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386) T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386) T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH Confidence 00222334443322 7789999999999998852 1233455555 Q ss_pred HhcCccCcEEEEEeecCCCCcccccc---Cc--------------chhh-----hhcccCCCCCCCHHHHHHHhhcCCCc Q 024096 127 ESLLATHGLLVLQFISAPDQCYDEYR---LS--------------PGFI-----KEYIFPGGCLPSLGRVTSAMTSSSGL 184 (272) Q Consensus 127 ~~~LkpgG~l~i~~~~~~~~~~~~~~---~~--------------~~~~-----~~~~~p~~~~~~~~~~~~~l~~~~Gf 184 (272) ++-|.|||++++.....+........ .. .+.+ ..+-.| .+.|+.+++...+.++.-| T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP-~Y~ps~eEv~~~Ie~~gsF 302 (386) T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIP-VYAPSLQDFKEVVEANGSF 302 (386) T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCc-ccCCCHHHHHHHHhhcCCE Confidence 67889999999987766432111000 00 0111 111112 3458899998888888889 Q ss_pred EEEEEEecCccHH----------HHHHHHHHHHHhhHHHHHhccCChHHH-HHHHHHHHHHHHHHhc--CCccEEEEEE Q 024096 185 CVEHLENIGIHYY----------QTLRCWRKNFMGKQSEILALGFNEKFI-RTWEYYFDYCAASFKS--RIIGDYQIVF 250 (272) Q Consensus 185 ~v~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~w~~~~~~~~~~f~~--g~~~~~~~~~ 250 (272) .+..++.+...+. ..-..|...+.+..+.+....|++... ..+..|-...+..... .......+++ T Consensus 303 ~I~~le~~~~~~~~~~~~~~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~~~ 381 (386) T PLN02668 303 AIDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELLEKLQFFHIVA 381 (386) T ss_pred EeeeeEEeeccCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEE Confidence 9888876442110 111234444444555555556775543 3577777777766666 6666666554 No 255 >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. Probab=98.00 E-value=0.001 Score=58.28 Aligned_cols=216 Identities=15% Similarity=0.158 Sum_probs=107.7 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-----------------cCCEEEEEcCCHHH-HHHHHH------HHH Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-----------------TGCKYTGITLSEEQ-LKYAEI------KVR 78 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-----------------~~~~v~gvd~s~~~-~~~a~~------~~~ 78 (272) +..++..-.....-+|+|+||..|..+..+.+. +..+|+--|+-.+- -...+. ... T Consensus 5 i~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~ 84 (334) T PF03492_consen 5 IKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK 84 (334) T ss_dssp HHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH T ss_pred HHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC Confidence 334443334455679999999999988876431 11477777763221 111111 111 Q ss_pred HcCCCCCeEEEEcccCCCC-CCCCccEEEEechhhccCh-------------------------------------hhHH Q 024096 79 EAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMIEHVGH-------------------------------------DYME 120 (272) Q Consensus 79 ~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~~~~~~-------------------------------------~~~~ 120 (272) ..+ +--+..+.+.+-.-- |.++.|+++|..++||++. +|+. T Consensus 85 ~~~-~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~ 163 (334) T PF03492_consen 85 KFR-NYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFS 163 (334) T ss_dssp HTT-SEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHH T ss_pred CCc-eEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHH Confidence 111 011344566655433 7899999999999998732 3344 Q ss_pred HHHHHHHhcCccCcEEEEEeecCCCCccccccC------cc---------hhh-----hhcccCCCCCCCHHHHHHHhhc Q 024096 121 EFFGCCESLLATHGLLVLQFISAPDQCYDEYRL------SP---------GFI-----KEYIFPGGCLPSLGRVTSAMTS 180 (272) Q Consensus 121 ~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~------~~---------~~~-----~~~~~p~~~~~~~~~~~~~l~~ 180 (272) .+|+.=++-|+|||++++.....++........ .. +.+ ..+..| .+.|+.+++...+.+ T Consensus 164 ~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP-~Y~ps~eEv~~~I~~ 242 (334) T PF03492_consen 164 SFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIP-IYFPSPEEVRAIIEE 242 (334) T ss_dssp HHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--S-BB---HHHHHHHHHH T ss_pred HHHHHhhheeccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCC-ccCCCHHHHHHHHhc Confidence 456656678899999999887766622111100 00 011 111112 346888998887877 Q ss_pred CCCcEEEEEEecCc-----cH--------HHHHHHHHHHHHhhHHHHHhccCChHHH-HHHHHHHHHHHHHHhc Q 024096 181 SSGLCVEHLENIGI-----HY--------YQTLRCWRKNFMGKQSEILALGFNEKFI-RTWEYYFDYCAASFKS 240 (272) Q Consensus 181 ~~Gf~v~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~w~~~~~~~~~~f~~ 240 (272) +..|.+..++.+.. .. ...-+.+...+.+..+-+....|+++.. ..|..|....++.... T Consensus 243 ~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~~ 316 (334) T PF03492_consen 243 EGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLEK 316 (334) T ss_dssp HTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH Confidence 88899877766541 10 0122223333333333333334555444 3477676666666544 No 256 >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] Probab=98.00 E-value=6.5e-05 Score=64.81 Aligned_cols=109 Identities=24% Similarity=0.206 Sum_probs=81.6 Q ss_pred CCCCEEEEECCCchHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHH--HHHcC----CCCCeEEEEcccCCCC--CCCCcc Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIK--VREAG----LQDHIRFYLCDYRQLP--KANKYD 103 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~--~~~~g----~~~~i~~~~~d~~~~~--~~~~fD 103 (272) +...+||-+|.|.|-..+.+.+.| -.+++-+|++|.+++.++.+ ++..+ .+++++++..|+.+.- ..+.|| T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508) T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508) T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc Confidence 345799999999999999999986 46899999999999999943 33221 1458899999987765 457999 Q ss_pred EEEEechhhcc---ChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 104 RIISCGMIEHV---GHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 104 ~V~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) .|+....-..- +.-.-.++..-+.+.|+++|.++++.. T Consensus 368 ~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag 408 (508) T COG4262 368 VVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG 408 (508) T ss_pred EEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC Confidence 99986421111 111225678888999999999998643 No 257 >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A. Probab=97.98 E-value=2.7e-05 Score=58.77 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=76.5 Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechhhccCh---------hhHHHHHHHH Q 024096 59 KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMIEHVGH---------DYMEEFFGCC 126 (272) Q Consensus 59 ~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~~~---------~~~~~~l~~~ 126 (272) +|+|+|+.++.++..++++.+.++.+++.+++.+-+++. +++++|+++.+.. ++|. +.-...++.+ T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140) T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140) T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH Confidence 689999999999999999999999889999999988877 3348999988743 2221 2335688999 Q ss_pred HhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC Q 024096 127 ESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272) Q Consensus 127 ~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272) .++|+|||.+.+..+...+.-.++.. ...++++.+- +..|.|....-+. T Consensus 79 l~lL~~gG~i~iv~Y~GH~gG~eE~~-----------------av~~~~~~L~-~~~~~V~~~~~~N 127 (140) T PF06962_consen 79 LELLKPGGIITIVVYPGHPGGKEESE-----------------AVEEFLASLD-QKEFNVLKYQFIN 127 (140) T ss_dssp HHHEEEEEEEEEEE--STCHHHHHHH-----------------HHHHHHHTS--TTTEEEEEEEESS T ss_pred HHhhccCCEEEEEEeCCCCCCHHHHH-----------------HHHHHHHhCC-cceEEEEEEEccC Confidence 99999999999977664332211111 1233444443 5678887776654 No 258 >COG4798 Predicted methyltransferase [General function prediction only] Probab=97.94 E-value=9.8e-05 Score=58.28 Aligned_cols=155 Identities=13% Similarity=0.019 Sum_probs=92.1 Q ss_pred HHHHHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHH----H--HHHHHHHHcCCCCCeEEEEcccCCC Q 024096 25 VLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQL----K--YAEIKVREAGLQDHIRFYLCDYRQL 96 (272) Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~----~--~a~~~~~~~g~~~~i~~~~~d~~~~ 96 (272) .++...++++|++|+|+=.|.|.++..++.. +...|+++-..+... + ..+...++.. ..|++.+-.+...+ T Consensus 39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-~aN~e~~~~~~~A~ 117 (238) T COG4798 39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-YANVEVIGKPLVAL 117 (238) T ss_pred ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-hhhhhhhCCccccc Confidence 3445556889999999999999999999876 445788776554421 1 1111111111 23566666666555 Q ss_pred CCCCCccEEEEechhhcc-----ChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCH Q 024096 97 PKANKYDRIISCGMIEHV-----GHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSL 171 (272) Q Consensus 97 ~~~~~fD~V~~~~~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 171 (272) .+.+..|+++....-|-+ .......+...+++.|||||.+++.+-......... ... . .+.... T Consensus 118 ~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~--dt~--~-------~~ri~~ 186 (238) T COG4798 118 GAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS--DTI--T-------LHRIDP 186 (238) T ss_pred CCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh--hhh--h-------hcccCh Confidence 555677777764433322 223456789999999999999999765532211100 000 0 122334 Q ss_pred HHHHHHhhcCCCcEEEEEEec Q 024096 172 GRVTSAMTSSSGLCVEHLENI 192 (272) Q Consensus 172 ~~~~~~l~~~~Gf~v~~~~~~ 192 (272) ....+. .+.+||++.....+ T Consensus 187 a~V~a~-veaaGFkl~aeS~i 206 (238) T COG4798 187 AVVIAE-VEAAGFKLEAESEI 206 (238) T ss_pred HHHHHH-HHhhcceeeeeehh Confidence 444433 44699988765544 No 259 >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] Probab=97.93 E-value=0.00033 Score=59.32 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=92.5 Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc---------------------------------- Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA---------------------------------- 80 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~---------------------------------- 80 (272) ..+||--|||.|.++..|+.. |-.+-|-|.|--|.-...-.+... T Consensus 151 ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~ 229 (369) T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH 229 (369) T ss_pred CceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc Confidence 568999999999999999986 667777788877754433322110 Q ss_pred -----CCCCCeEEEEcccCCCCC----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccc Q 024096 81 -----GLQDHIRFYLCDYRQLPK----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEY 151 (272) Q Consensus 81 -----g~~~~i~~~~~d~~~~~~----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 151 (272) +..+......||+.+.-+ .+.||+|+.++-+... ++..++++.+..+|||||+.+=.-+.. +.. T Consensus 230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWiNlGPLl----YHF- 302 (369) T KOG2798|consen 230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWINLGPLL----YHF- 302 (369) T ss_pred ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEEecccee----eec- Confidence 111123334566665442 2479999999877766 678899999999999999987421110 000 Q ss_pred cCcchhhhhcccCCCCCCCHHHHHHHhhcCCCcEEEEEEecCccH Q 024096 152 RLSPGFIKEYIFPGGCLPSLGRVTSAMTSSSGLCVEHLENIGIHY 196 (272) Q Consensus 152 ~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~~~ 196 (272) ......-+. .+-=++.+++. .+.+..||+++..+.+...| T Consensus 303 ~d~~g~~~~----~siEls~edl~-~v~~~~GF~~~ke~~Idt~Y 342 (369) T KOG2798|consen 303 EDTHGVENE----MSIELSLEDLK-RVASHRGFEVEKERGIDTTY 342 (369) T ss_pred cCCCCCccc----ccccccHHHHH-HHHHhcCcEEEEeeeeeccc Confidence 000000000 01124667776 45668999998776554444 No 260 >KOG3115 consensus Methyltransferase-like protein [General function prediction only] Probab=97.82 E-value=7.9e-05 Score=59.19 Aligned_cols=106 Identities=15% Similarity=0.252 Sum_probs=73.3 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcC------CCCCeEEEEcccCCCCC----CCCc Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAG------LQDHIRFYLCDYRQLPK----ANKY 102 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g------~~~~i~~~~~d~~~~~~----~~~f 102 (272) ..-.+.|||||-|++...|+.. |+.-+.|.||-....++.+++++... ...++.+...+.....+ -++. T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249) T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249) T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc Confidence 3357999999999999999988 88889999999999999999887653 22456777666555431 1233 Q ss_pred cEEEEechhhccChh------hHHHHHHHHHhcCccCcEEEEE Q 024096 103 DRIISCGMIEHVGHD------YMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 103 D~V~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +-.+....-.|+-.. .-..++.+..-+|++||.++.. T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yti 182 (249) T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTI 182 (249) T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEE Confidence 333333333333100 0135788889999999999864 No 261 >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. Probab=97.73 E-value=0.0001 Score=60.62 Aligned_cols=90 Identities=21% Similarity=0.227 Sum_probs=56.4 Q ss_pred HHHHHHcCCCCCC--EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHH---HHHcCCC-----CCeEEEEccc Q 024096 24 SVLIEKARVSKGQ--EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIK---VREAGLQ-----DHIRFYLCDY 93 (272) Q Consensus 24 ~~l~~~l~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~---~~~~g~~-----~~i~~~~~d~ 93 (272) +.+++.++++++. +|||.-+|.|.-+..++.. |++|+++|-||-.....+.- ....... .+++++++|. T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~ 141 (234) T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA 141 (234) T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH Confidence 5677888887774 9999999999999999875 89999999999876555433 3222111 3799999998 Q ss_pred CCCC--CCCCccEEEEechhhcc Q 024096 94 RQLP--KANKYDRIISCGMIEHV 114 (272) Q Consensus 94 ~~~~--~~~~fD~V~~~~~~~~~ 114 (272) .++- ++++||+|+...++.+- T Consensus 142 ~~~L~~~~~s~DVVY~DPMFp~~ 164 (234) T PF04445_consen 142 LEYLRQPDNSFDVVYFDPMFPER 164 (234) T ss_dssp CCHCCCHSS--SEEEE--S---- T ss_pred HHHHhhcCCCCCEEEECCCCCCc Confidence 8754 46899999999998874 No 262 >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] Probab=97.68 E-value=0.00018 Score=61.84 Aligned_cols=113 Identities=20% Similarity=0.164 Sum_probs=78.3 Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEE----EEcccCCCCCCCCccEEE Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRF----YLCDYRQLPKANKYDRII 106 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~----~~~d~~~~~~~~~fD~V~ 106 (272) ....+|||+|.|.|.....+-.- |. ..++.++.|+...+........... ..... ++.|-..++..+.|++|+ T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp~ad~ytl~i 190 (484) T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLPAADLYTLAI 190 (484) T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCCccceeehhh Confidence 35568999999999876665544 44 3678888999887777665544432 22333 334444455567888888 Q ss_pred EechhhccChh-hHHHHHHHHHhcCccCcEEEEEeecCCCC Q 024096 107 SCGMIEHVGHD-YMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272) Q Consensus 107 ~~~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272) ...-+-+.+.+ .+...++.+..++.|||.+++.+...|.. T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484) T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484) T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchh Confidence 87766666543 34458999999999999999987776554 No 263 >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] Probab=97.64 E-value=0.00047 Score=54.19 Aligned_cols=102 Identities=16% Similarity=0.118 Sum_probs=66.4 Q ss_pred CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCCCC---------CC Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQLP---------KA 99 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~~~---------~~ 99 (272) +.|+++|||+||.+|.++....++ +...|.|+|+-+- ..+..+.++.+ |+.+.. +. T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~------------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232) T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI------------EPPEGATIIQGNDVTDPETYRKIFEALPN 134 (232) T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec------------cCCCCcccccccccCCHHHHHHHHHhCCC Confidence 468999999999999999988887 6789999998441 11234555555 665432 45 Q ss_pred CCccEEEEechhhccCh--hhHHHHH-------HHHHhcCccCcEEEEEeecCCC Q 024096 100 NKYDRIISCGMIEHVGH--DYMEEFF-------GCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~--~~~~~~l-------~~~~~~LkpgG~l~i~~~~~~~ 145 (272) ...|+|+|...-..-+. .|-...+ .-....++|+|.++.-.+...+ T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232) T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232) T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc Confidence 68999998643211111 1112223 3334678899999987776443 No 264 >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] Probab=97.59 E-value=0.00013 Score=64.30 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=61.1 Q ss_pred CEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEe Q 024096 36 QEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISC 108 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~ 108 (272) ..|||||+|+|.++...++..+-.|+++|.-..|.+.|+....++|+.++|.++..-..++. +..+.|+++.. T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e 142 (636) T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRE 142 (636) T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHh Confidence 47999999999999988887556899999999999999999999999999999987777665 23446666543 No 265 >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A. Probab=97.59 E-value=0.022 Score=46.99 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=65.7 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-CC--C Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-PK--A 99 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~~--~ 99 (272) ..+.++.++ .|.+||=+|=.-- .++.++.. ...+|+.+|+++..++..++.+++.|++ ++.++.|+.+. |+ . T Consensus 35 ~~~~~~gdL-~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~ 110 (243) T PF01861_consen 35 ALMAERGDL-EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELR 110 (243) T ss_dssp HHHHHTT-S-TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTS T ss_pred HHHHhcCcc-cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHh Confidence 345555443 5789999995432 23333332 5789999999999999999999999984 99999998774 32 3 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCc-EEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHG-LLVL 138 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~i 138 (272) ++||++++...-- . +-..-++.+....||..| ..++ T Consensus 111 ~~fD~f~TDPPyT-~--~G~~LFlsRgi~~Lk~~g~~gy~ 147 (243) T PF01861_consen 111 GKFDVFFTDPPYT-P--EGLKLFLSRGIEALKGEGCAGYF 147 (243) T ss_dssp S-BSEEEE---SS-H--HHHHHHHHHHHHTB-STT-EEEE T ss_pred cCCCEEEeCCCCC-H--HHHHHHHHHHHHHhCCCCceEEE Confidence 8999999976422 2 455789999999999777 4444 No 266 >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] Probab=97.52 E-value=0.0015 Score=56.85 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=83.6 Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHc-cCC----EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------ Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQ-TGC----KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------ 97 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~----~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------ 97 (272) .|+++|+++|||+++-.|+-+..+.+. ... .+++-|.++.........+..... .++.+...|+...+ T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~ 228 (375) T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKD 228 (375) T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceecccccccc Confidence 456789999999999999999888876 322 899999999888887777754433 35666666665554 Q ss_pred ----CCCCccEEEEech------hhccCh---------------hhHHHHHHHHHhcCccCcEEEEEeecCCCC Q 024096 98 ----KANKYDRIISCGM------IEHVGH---------------DYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272) Q Consensus 98 ----~~~~fD~V~~~~~------~~~~~~---------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272) ....||.|++.-. +.+.++ .-...++.+..++||+||+++.++.+.... T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpi 302 (375) T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPI 302 (375) T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCch Confidence 1247999987531 111110 112458889999999999999988775543 No 267 >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity Probab=97.49 E-value=7e-05 Score=67.37 Aligned_cols=99 Identities=18% Similarity=0.360 Sum_probs=65.7 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCC--HHHHHHHHHHHHHcCCCCCeEEEEccc-CCCC-CCCCccEEEEec Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLS--EEQLKYAEIKVREAGLQDHIRFYLCDY-RQLP-KANKYDRIISCG 109 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s--~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~-~~~~fD~V~~~~ 109 (272) .=..|+|+.+|.|+++..|.+. ..-|.-+-++ +..+.. +-..|+ |-.++ |. +.++ -+..||+|.+.. T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~~~~ntL~v----IydRGL---IG~yh-DWCE~fsTYPRTYDLlHA~~ 435 (506) T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-PVWVMNVVPVSGPNTLPV----IYDRGL---IGVYH-DWCEAFSTYPRTYDLLHADG 435 (506) T ss_pred ceeeeeeecccccHHHHHhccC-CceEEEecccCCCCcchh----hhhccc---chhcc-chhhccCCCCcchhheehhh Confidence 3369999999999999999876 4333333222 222222 223343 22222 32 2333 458999999999 Q ss_pred hhhccChh-hHHHHHHHHHhcCccCcEEEEEee Q 024096 110 MIEHVGHD-YMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 110 ~~~~~~~~-~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ++....+. ++..++-++.|+|+|+|.++|.+. T Consensus 436 lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506) T PF03141_consen 436 LFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506) T ss_pred hhhhhcccccHHHHHHHhHhhcCCCceEEEecc Confidence 88876433 567899999999999999998544 No 268 >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] Probab=97.49 E-value=0.00069 Score=60.87 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=84.0 Q ss_pred CCC-EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh Q 024096 34 KGQ-EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272) Q Consensus 34 ~~~-~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272) +-. ++|-+|||.-.++..+-+-....|+.+|+|+..++.+...... . ..-..+...|+..+. ++++||+|+-.+.+ T Consensus 47 p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~-~~~~~~~~~d~~~l~fedESFdiVIdkGtl 124 (482) T KOG2352|consen 47 PSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-E-RPEMQMVEMDMDQLVFEDESFDIVIDKGTL 124 (482) T ss_pred hhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-C-CcceEEEEecchhccCCCcceeEEEecCcc Confidence 444 9999999999888888776446899999999988887766431 1 235789999999988 88999999999998 Q ss_pred hccChh--------hHHHHHHHHHhcCccCcEEEEEee Q 024096 112 EHVGHD--------YMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 112 ~~~~~~--------~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) +++-.. .....+.+++++|++||+++.... T Consensus 125 Dal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482) T KOG2352|consen 125 DALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482) T ss_pred ccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe Confidence 886211 224568899999999999887655 No 269 >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] Probab=97.48 E-value=0.00039 Score=56.76 Aligned_cols=106 Identities=15% Similarity=0.107 Sum_probs=75.3 Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCC Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANK 101 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~ 101 (272) +.+.++||.+||-+|+++|..-.++..- +..-|+++|.|+..-......+++. .||--+..|+.... .-.. T Consensus 150 dnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP~KYRmlVgm 226 (317) T KOG1596|consen 150 DNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHPAKYRMLVGM 226 (317) T ss_pred cceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCchheeeeeee Confidence 5566899999999999999988888876 5678999999986544333333332 46777778876543 2357 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) .|+|++.-. .| +....+.-+....||+||.++++. T Consensus 227 VDvIFaDva---qp-dq~RivaLNA~~FLk~gGhfvisi 261 (317) T KOG1596|consen 227 VDVIFADVA---QP-DQARIVALNAQYFLKNGGHFVISI 261 (317) T ss_pred EEEEeccCC---Cc-hhhhhhhhhhhhhhccCCeEEEEE Confidence 888887421 11 223445667889999999999854 No 270 >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] Probab=97.43 E-value=0.0025 Score=55.49 Aligned_cols=100 Identities=28% Similarity=0.282 Sum_probs=71.9 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-cCCCC-CCCCcc Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-YRQLP-KANKYD 103 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-~~~~~-~~~~fD 103 (272) ++....+||++|+=+|+| .|+.+.++++..+++|+++|.+++-.+.|++. | ...++... ....+ -.+.|| T Consensus 159 lk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----G---Ad~~i~~~~~~~~~~~~~~~d 231 (339) T COG1064 159 LKKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----G---ADHVINSSDSDALEAVKEIAD 231 (339) T ss_pred hhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----C---CcEEEEcCCchhhHHhHhhCc Confidence 444678899999999988 56788888987689999999999999988876 3 23445433 22222 123499 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) +|+..-. ...+....+.|+++|++++.-.. T Consensus 232 ~ii~tv~---------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339) T COG1064 232 AIIDTVG---------PATLEPSLKALRRGGTLVLVGLP 261 (339) T ss_pred EEEECCC---------hhhHHHHHHHHhcCCEEEEECCC Confidence 9998533 34556667788999999985443 No 271 >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. Probab=97.39 E-value=0.00035 Score=56.31 Aligned_cols=111 Identities=14% Similarity=0.129 Sum_probs=59.2 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC- Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272) ..++-++. ++.|+|+|.-.|+.+.++|.. ..++|+|+|++.... .+..++...+.++|++++||..+.. T Consensus 25 qeli~~~k---Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~--~~~a~e~hp~~~rI~~i~Gds~d~~~ 99 (206) T PF04989_consen 25 QELIWELK---PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH--NRKAIESHPMSPRITFIQGDSIDPEI 99 (206) T ss_dssp HHHHHHH-----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHH T ss_pred HHHHHHhC---CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh--chHHHhhccccCceEEEECCCCCHHH Confidence 44444433 469999999999998888763 347999999953222 2222333345579999999987654 Q ss_pred --C----CCCcc--EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 98 --K----ANKYD--RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 98 --~----~~~fD--~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) . ....+ +|+- .+ +|.. +.....|+....++++|+++++.|.. T Consensus 100 ~~~v~~~~~~~~~vlVil-Ds-~H~~-~hvl~eL~~y~plv~~G~Y~IVeDt~ 149 (206) T PF04989_consen 100 VDQVRELASPPHPVLVIL-DS-SHTH-EHVLAELEAYAPLVSPGSYLIVEDTI 149 (206) T ss_dssp HHTSGSS----SSEEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSHH T ss_pred HHHHHHhhccCCceEEEE-CC-CccH-HHHHHHHHHhCccCCCCCEEEEEecc Confidence 1 11233 3333 33 3321 34567788899999999999986554 No 272 >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. Probab=97.35 E-value=0.0039 Score=50.25 Aligned_cols=116 Identities=11% Similarity=0.084 Sum_probs=69.5 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c--CCEEEEEcCCHHHHHHHHHHHHHc-------------------- Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T--GCKYTGITLSEEQLKYAEIKVREA-------------------- 80 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~--~~~v~gvd~s~~~~~~a~~~~~~~-------------------- 80 (272) .+.+..+.-..+-++.|-+||.|.+..-+.-. . =..|++.|+++.+++.|++|+... T Consensus 41 qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~ 120 (246) T PF11599_consen 41 QRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYG 120 (246) T ss_dssp HHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH- T ss_pred HHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcC Confidence 44444444456679999999999987766543 1 247999999999999999976321 Q ss_pred ---------------------CCCCCeEEEEcccCCCC------CCCCccEEEEechhhcc-------ChhhHHHHHHHH Q 024096 81 ---------------------GLQDHIRFYLCDYRQLP------KANKYDRIISCGMIEHV-------GHDYMEEFFGCC 126 (272) Q Consensus 81 ---------------------g~~~~i~~~~~d~~~~~------~~~~fD~V~~~~~~~~~-------~~~~~~~~l~~~ 126 (272) |-.......+.|+.+.. .....|+|+..-..-++ +.....++++.+ T Consensus 121 kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l 200 (246) T PF11599_consen 121 KPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSL 200 (246) T ss_dssp -HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHH T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHH Confidence 22223678888887722 33456999987544333 223457899999 Q ss_pred HhcCccCcEEEEE Q 024096 127 ESLLATHGLLVLQ 139 (272) Q Consensus 127 ~~~LkpgG~l~i~ 139 (272) +.+|.++++++++ T Consensus 201 ~~vLp~~sVV~v~ 213 (246) T PF11599_consen 201 APVLPERSVVAVS 213 (246) T ss_dssp HCCS-TT-EEEEE T ss_pred HhhCCCCcEEEEe Confidence 9999666666663 No 273 >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] Probab=97.32 E-value=0.0035 Score=57.90 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=85.7 Q ss_pred HHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc-----CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC- Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT-----GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP- 97 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-----~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~- 97 (272) +.|++.+...+..+|.|..||+|++.....+.. ...++|.|+++.....++.++--+|....+...++|...-| T Consensus 176 ~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~ 255 (489) T COG0286 176 ELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPK 255 (489) T ss_pred HHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCc Confidence 456666666677899999999999887766652 26799999999999999999988887545677777765554 Q ss_pred C-----CCCccEEEEechhh---cc-------------------C-hhhHHHHHHHHHhcCccCcEEEE Q 024096 98 K-----ANKYDRIISCGMIE---HV-------------------G-HDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 98 ~-----~~~fD~V~~~~~~~---~~-------------------~-~~~~~~~l~~~~~~LkpgG~l~i 138 (272) . ...||.|+++..+. +. + ......++..+...|+|||+..+ T Consensus 256 ~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489) T COG0286 256 HDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489) T ss_pred ccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE Confidence 2 25699999987663 10 0 01125689999999999986665 No 274 >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] Probab=97.32 E-value=0.00085 Score=60.68 Aligned_cols=134 Identities=13% Similarity=0.218 Sum_probs=97.0 Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHcCCCC---CCEEEEECCCchHHHHHHHH---c--cCCEEEEEcCCHHHHHHHH Q 024096 3 YSCAIFKSEHEDLEVGQMRKVSVLIEKARVSK---GQEVLDIGCGWGTLAIEIVK---Q--TGCKYTGITLSEEQLKYAE 74 (272) Q Consensus 3 y~~~~~~~~~~~l~~aq~~~~~~l~~~l~~~~---~~~vLDiG~G~G~~~~~l~~---~--~~~~v~gvd~s~~~~~~a~ 74 (272) ++...|+.+-.-..+=|...+..++++.+... ...|+-+|.|.|-+.....+ . ...+++++|-+|.++-..+ T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~ 412 (649) T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ 412 (649) T ss_pred hhhhhhhccchHHHHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh Confidence 44556666665666666666777777765432 34677789999987655433 2 3468999999999887765 Q ss_pred HHHHHcCCCCCeEEEEcccCCCCC-CCCccEEEEechhhccChhhH-HHHHHHHHhcCccCcEEEE Q 024096 75 IKVREAGLQDHIRFYLCDYRQLPK-ANKYDRIISCGMIEHVGHDYM-EEFFGCCESLLATHGLLVL 138 (272) Q Consensus 75 ~~~~~~g~~~~i~~~~~d~~~~~~-~~~fD~V~~~~~~~~~~~~~~-~~~l~~~~~~LkpgG~l~i 138 (272) . .+...+.++|+++..|+...++ .++.|++++. .+.-+++.++ ++.+.-+.+.|||+|..+= T Consensus 413 ~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649) T KOG0822|consen 413 N-RNFECWDNRVTIISSDMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649) T ss_pred h-hchhhhcCeeEEEeccccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcCCCceEcc Confidence 5 3334567899999999999985 4899998874 4455555544 6899999999999987763 No 275 >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. Probab=97.24 E-value=0.014 Score=49.45 Aligned_cols=121 Identities=18% Similarity=0.222 Sum_probs=83.3 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEcccCCC-C Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL--QDHIRFYLCDYRQL-P 97 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~-~ 97 (272) ..++..+...-......|+.+|||.=.-...+....+.+++=+|. |+.++.-++.+.+.+. ..+.+++..|+.+. . T Consensus 68 r~~D~~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~ 146 (260) T TIGR00027 68 RFFDDFLLAAVAAGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWP 146 (260) T ss_pred HHHHHHHHHHHhcCCcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHH Confidence 334555544322334579999999876666664323456666664 6777777777776542 45788999998621 0 Q ss_pred ---C-----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 98 ---K-----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 98 ---~-----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) . .+.--++++.+++.+++.+....+++.+.+...||+.+++.... T Consensus 147 ~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260) T TIGR00027 147 AALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260) T ss_pred HHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc Confidence 1 13455888889999999988999999999988899999885443 No 276 >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] Probab=97.13 E-value=0.0012 Score=53.60 Aligned_cols=112 Identities=20% Similarity=0.277 Sum_probs=73.9 Q ss_pred ccccccCCCCCCHH---HHHHHHHHHHHHHcCC------CCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHH Q 024096 3 YSCAIFKSEHEDLE---VGQMRKVSVLIEKARV------SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKY 72 (272) Q Consensus 3 y~~~~~~~~~~~l~---~aq~~~~~~l~~~l~~------~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~ 72 (272) |+-.+|+=++..|. ......+.++.+.|.- .++.++||||.|--.+=-.+..+ ++.+.+|.|+++..++. T Consensus 38 Y~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~s 117 (292) T COG3129 38 YAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSS 117 (292) T ss_pred cceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHH Confidence 55556655554333 1122334444444331 35678999998865544444444 78999999999999999 Q ss_pred HHHHHHHc-CCCCCeEEEEcccCC-C-C----CCCCccEEEEechhhcc Q 024096 73 AEIKVREA-GLQDHIRFYLCDYRQ-L-P----KANKYDRIISCGMIEHV 114 (272) Q Consensus 73 a~~~~~~~-g~~~~i~~~~~d~~~-~-~----~~~~fD~V~~~~~~~~~ 114 (272) |+..+..+ ++...++.+...-.+ + + ..+.||++.|+..+|.. T Consensus 118 A~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s 166 (292) T COG3129 118 AKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDS 166 (292) T ss_pred HHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchh Confidence 99999887 676667765543222 1 1 35799999999998854 No 277 >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] Probab=97.13 E-value=0.0067 Score=50.49 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=70.3 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHH-----HHcCCCCCeEEEEcccCCCC----CCCC-cc Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKV-----REAGLQDHIRFYLCDYRQLP----KANK-YD 103 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~-----~~~g~~~~i~~~~~d~~~~~----~~~~-fD 103 (272) ...+|||+|+|+|-.+..++...+++|...|+.. .++....+. +.+.+...+.+...+....+ -... +| T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248) T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248) T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc Confidence 3567999999999888777776788999888744 333333332 22222235666666655543 1233 99 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +|++..++.+- +....++.-+...|..++.+++. T Consensus 165 lilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~ 198 (248) T KOG2793|consen 165 LILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLA 198 (248) T ss_pred EEEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEE Confidence 99999998876 55678888888888899965553 No 278 >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA:S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A. Probab=97.13 E-value=0.0016 Score=57.84 Aligned_cols=102 Identities=24% Similarity=0.253 Sum_probs=78.5 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCC-CeEEEEcccCCCC--CCCCccEEEEe Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQD-HIRFYLCDYRQLP--KANKYDRIISC 108 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~-~i~~~~~d~~~~~--~~~~fD~V~~~ 108 (272) .+.+|||.=+|+|.=++..+.+ .+ .+|+.-|+|+..++.+++|++.+++++ ++++.+.|+..+- ....||+|=.. T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377) T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377) T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE- T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC Confidence 4569999999999988888887 44 589999999999999999999999987 7999999987765 56899999874 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) . ++ .+..++..+.+.++.||.+.++.. T Consensus 129 P----fG--Sp~pfldsA~~~v~~gGll~vTaT 155 (377) T PF02005_consen 129 P----FG--SPAPFLDSALQAVKDGGLLCVTAT 155 (377) T ss_dssp -----SS----HHHHHHHHHHEEEEEEEEEEE- T ss_pred C----CC--CccHhHHHHHHHhhcCCEEEEecc Confidence 3 22 236789999999999999999543 No 279 >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. Probab=97.13 E-value=0.00051 Score=58.96 Aligned_cols=86 Identities=21% Similarity=0.251 Sum_probs=64.6 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---- Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272) ++.+++.+...++..++|.--|.|+-+..+.+. ++++++|+|-++.+++.+++++... .+++.++++++.++. T Consensus 9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~ 86 (310) T PF01795_consen 9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK 86 (310) T ss_dssp HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH T ss_pred HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH Confidence 567788888889999999999999999999988 6799999999999999998876543 468999999998876 Q ss_pred -C--CCCccEEEEech Q 024096 98 -K--ANKYDRIISCGM 110 (272) Q Consensus 98 -~--~~~fD~V~~~~~ 110 (272) . ...+|.|+.... T Consensus 87 ~~~~~~~~dgiL~DLG 102 (310) T PF01795_consen 87 ELNGINKVDGILFDLG 102 (310) T ss_dssp HTTTTS-EEEEEEE-S T ss_pred HccCCCccCEEEEccc Confidence 1 247888887653 No 280 >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] Probab=97.07 E-value=0.0053 Score=52.10 Aligned_cols=88 Identities=15% Similarity=0.156 Sum_probs=74.1 Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-- Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-- 97 (272) Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-- 97 (272) .++.+++.|...++...+|.--|.|+-+..+.+. + ..+++|+|-++..++.|++.+...+ +++.+++.++.++. T Consensus 11 Ll~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~ 88 (314) T COG0275 11 LLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEA 88 (314) T ss_pred HHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHH Confidence 4578889999999999999999999999999988 3 3679999999999999999987755 68999999988765 Q ss_pred ----CCCCccEEEEechh Q 024096 98 ----KANKYDRIISCGMI 111 (272) Q Consensus 98 ----~~~~fD~V~~~~~~ 111 (272) ...++|-|+....+ T Consensus 89 l~~~~i~~vDGiL~DLGV 106 (314) T COG0275 89 LKELGIGKVDGILLDLGV 106 (314) T ss_pred HHhcCCCceeEEEEeccC Confidence 23578888776543 No 281 >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional Probab=97.03 E-value=0.0069 Score=55.91 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=66.4 Q ss_pred CCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-----------CCC- Q 024096 32 VSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-----------LPK- 98 (272) Q Consensus 32 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-----------~~~- 98 (272) ..++++|+=+|||. |..+...++..|++|+++|.+++..+.+++. |. ++...|..+ ... T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----GA----~~v~i~~~e~~~~~~gya~~~s~~ 233 (509) T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----GA----EFLELDFEEEGGSGDGYAKVMSEE 233 (509) T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC----eEEEeccccccccccchhhhcchh Confidence 35789999999995 5566666766889999999999988888763 32 222211111 000 Q ss_pred ------------CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 99 ------------ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 99 ------------~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ...+|+|+..-....- +.+..+.++..+.+||||+++.... T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~--~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509) T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGK--PAPKLITAEMVASMKPGSVIVDLAA 286 (509) T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcc--cCcchHHHHHHHhcCCCCEEEEEcc Confidence 1468999986544322 1223345899999999999886433 No 282 >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] Probab=96.99 E-value=0.0041 Score=54.50 Aligned_cols=130 Identities=12% Similarity=0.141 Sum_probs=92.5 Q ss_pred CCCHHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHH-------HHcCC- Q 024096 12 HEDLEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKV-------REAGL- 82 (272) Q Consensus 12 ~~~l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~-------~~~g~- 82 (272) ++...+-+.+.+..+++.+.+.+++.-.|+|+|.|++...++...+ .+-.|+++.....+.+..+. +..|- T Consensus 170 s~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~ 249 (419) T KOG3924|consen 170 SETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK 249 (419) T ss_pred ccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC Confidence 3456788888899999999999999999999999999988887633 46778888655544443332 22233 Q ss_pred CCCeEEEEcccCCCC----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC Q 024096 83 QDHIRFYLCDYRQLP----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 83 ~~~i~~~~~d~~~~~----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272) +..+..+++++.... -....++|+++++..- ++..--++++..-+++|-+++=.....+ T Consensus 250 ~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd---p~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419) T KOG3924|consen 250 PNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD---PELKLRSKEILQKCKDGTRIISSKPLVP 312 (419) T ss_pred cCceeecccccCCHHHHHHHhhcceEEEEecccCC---HHHHHhhHHHHhhCCCcceEeccccccc Confidence 456888899887654 2357889998876443 2333445588888899999875544443 No 283 >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] Probab=96.89 E-value=0.0037 Score=53.81 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=84.6 Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHH-------HHHHHHHHcCCC-CCeEEEEcccCCCC- Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLK-------YAEIKVREAGLQ-DHIRFYLCDYRQLP- 97 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~-------~a~~~~~~~g~~-~~i~~~~~d~~~~~- 97 (272) .+..-.++|+-|.|--.|||++....+. .|+.|+|.||+-.++. ..+.|.++.|.. .-+.+..+|+..-+ T Consensus 201 AN~Amv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~ 279 (421) T KOG2671|consen 201 ANQAMVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL 279 (421) T ss_pred hhhhccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch Confidence 3444578999999999999999887776 6999999999988876 345677777753 34678999998887 Q ss_pred -CCCCccEEEEechh------------------------hccChh-------hHHHHHHHHHhcCccCcEEEEEee Q 024096 98 -KANKYDRIISCGMI------------------------EHVGHD-------YMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 98 -~~~~fD~V~~~~~~------------------------~~~~~~-------~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ....||.|+|.... .|.|.. -...++.-.++.|..||++++.-+ T Consensus 280 rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421) T KOG2671|consen 280 RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421) T ss_pred hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC Confidence 55789999998531 222221 123456666889999999998544 No 284 >PHA01634 hypothetical protein Probab=96.86 E-value=0.0089 Score=44.09 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=54.1 Q ss_pred HHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE Q 024096 27 IEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRII 106 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272) ...++. .+.+|+|||.+.|..+++++-+...+|+++|+++...+..+++++.+.+-++.. ...+... .-+.||+.. T Consensus 22 Y~~idv-k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v-~~~eW~~--~Y~~~Di~~ 97 (156) T PHA01634 22 YGMLNV-YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAV-MKGEWNG--EYEDVDIFV 97 (156) T ss_pred hhheee-cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeecee-ecccccc--cCCCcceEE Confidence 344443 578999999999999999998755689999999999999999887764322211 1112111 225678766 Q ss_pred E Q 024096 107 S 107 (272) Q Consensus 107 ~ 107 (272) . T Consensus 98 i 98 (156) T PHA01634 98 M 98 (156) T ss_pred E Confidence 5 No 285 >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] Probab=96.76 E-value=0.00038 Score=52.94 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=40.1 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) .+++.|+|.+..+++|+.-++-..++++|+++|||||++-++.+. T Consensus 44 ~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPd 88 (185) T COG4627 44 EDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPD 88 (185) T ss_pred CCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCC Confidence 568999999999999998887889999999999999999985443 No 286 >PRK09880 L-idonate 5-dehydrogenase; Provisional Probab=96.72 E-value=0.015 Score=51.09 Aligned_cols=102 Identities=21% Similarity=0.269 Sum_probs=64.0 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCcc Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYD 103 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD 103 (272) +......++++||=.||| .|..+..+++..++ +|+++|.+++..+.+++. |...-+.....++.+.. ..+.+| T Consensus 162 l~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~g~~D 237 (343) T PRK09880 162 AHQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM----GADKLVNPQNDDLDHYKAEKGYFD 237 (343) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc----CCcEEecCCcccHHHHhccCCCCC Confidence 344455678999999987 55666777777676 699999999888877653 42111111111222211 123589 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +|+-. .+. ...++...+.|++||++++.. T Consensus 238 ~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~G 266 (343) T PRK09880 238 VSFEV-----SGH---PSSINTCLEVTRAKGVMVQVG 266 (343) T ss_pred EEEEC-----CCC---HHHHHHHHHHhhcCCEEEEEc Confidence 88753 322 245667788899999998743 No 287 >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] Probab=96.70 E-value=0.0068 Score=51.22 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=82.4 Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHc--CC-CCCeEEEEcccCCCC---CCCCccE Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREA--GL-QDHIRFYLCDYRQLP---KANKYDR 104 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~--g~-~~~i~~~~~d~~~~~---~~~~fD~ 104 (272) +...++||-||-|.|+..+..+++ .-..+.-+|++...++..++.+... |. .+++....||...+- ..++||+ T Consensus 119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337) T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337) T ss_pred CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE Confidence 345689999999999999988887 3347999999999999999887654 22 357899999865543 4689999 Q ss_pred EEEechhhccCh--hhHHHHHHHHHhcCccCcEEEEEe Q 024096 105 IISCGMIEHVGH--DYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 105 V~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) |+..-.=.-.+- ...+.++..+.+.||++|+++... T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337) T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337) T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec Confidence 998543222221 234678888999999999999854 No 288 >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] Probab=96.60 E-value=0.011 Score=51.68 Aligned_cols=61 Identities=21% Similarity=0.238 Sum_probs=49.0 Q ss_pred HHHHHHHHHHHHHHcCCC-CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHH Q 024096 16 EVGQMRKVSVLIEKARVS-KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIK 76 (272) Q Consensus 16 ~~aq~~~~~~l~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~ 76 (272) .+.+.+.+..++..+... +-+.|+|+|.|.|.++..++-..+..|.+||-|....+.|+.. T Consensus 134 ~qhEi~~lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476) T KOG2651|consen 134 KQHEIRRLSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476) T ss_pred HHHHHHHHHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH Confidence 356666677777776543 4479999999999999999988899999999998777777654 No 289 >PRK11524 putative methyltransferase; Provisional Probab=96.59 E-value=0.01 Score=50.84 Aligned_cols=61 Identities=21% Similarity=0.189 Sum_probs=50.0 Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE 79 (272) Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~ 79 (272) +--...++.+++... .+|+.|||.-||+|..+....+ .+.+.+|+|++++.++.|++++.. T Consensus 192 ~kP~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~-lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284) T PRK11524 192 QKPEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKA-SGRKFIGIEINSEYIKMGLRRLDV 252 (284) T ss_pred cChHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHH-cCCCEEEEeCCHHHHHHHHHHHHh Confidence 333555677776655 6899999999999999887666 488999999999999999999753 No 290 >COG1565 Uncharacterized conserved protein [Function unknown] Probab=96.46 E-value=0.021 Score=49.79 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=48.7 Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-----c----CCEEEEEcCCHHHHHHHHHHHHHc Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-----T----GCKYTGITLSEEQLKYAEIKVREA 80 (272) Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-----~----~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272) .--..+-.+.+++..+....++|+|.|+|.++..+.+. | .+++..+|+|++..+.=+++++.. T Consensus 61 lla~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370) T COG1565 61 LLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370) T ss_pred HHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc Confidence 33334455667777767789999999999999887663 1 579999999999998888887654 No 291 >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] Probab=96.45 E-value=0.015 Score=46.12 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=74.5 Q ss_pred CCCEEEEECCCchHHHHHHHHc---cC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCC Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANK 101 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~ 101 (272) .++.|+|+|+-.|+.+.+.|.. .| .+|+++|++-...+.+... . ++|.++.++..+.. ..+. T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~ 142 (237) T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNE 142 (237) T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcC Confidence 4569999999999988888764 34 7999999987665443322 1 58999999987754 1222 Q ss_pred c-cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 102 Y-DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 102 f-D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) + -+.++..+-||+ +.....++-...+|..|-++++.+....+ T Consensus 143 y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237) T COG3510 143 YPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237) T ss_pred CCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccC Confidence 3 344555666666 55567788888999999999997765443 No 292 >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. Probab=96.41 E-value=0.0024 Score=45.93 Aligned_cols=39 Identities=31% Similarity=0.598 Sum_probs=32.2 Q ss_pred CccEEEEechhhcc----ChhhHHHHHHHHHhcCccCcEEEEE Q 024096 101 KYDRIISCGMIEHV----GHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 101 ~fD~V~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +||+|+|..+.-++ +|+-+..+++++++.|+|||.+++. T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110) T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110) T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe Confidence 48999998877654 5667788999999999999999984 No 293 >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Probab=96.40 E-value=0.036 Score=53.38 Aligned_cols=134 Identities=15% Similarity=0.157 Sum_probs=76.2 Q ss_pred ccccccCCCCCCHHHHHHHHHH--HHHHHcC--CCCCCEEEEECCCchHHHHHHHHc--------c-----CCEEEEEcC Q 024096 3 YSCAIFKSEHEDLEVGQMRKVS--VLIEKAR--VSKGQEVLDIGCGWGTLAIEIVKQ--------T-----GCKYTGITL 65 (272) Q Consensus 3 y~~~~~~~~~~~l~~aq~~~~~--~l~~~l~--~~~~~~vLDiG~G~G~~~~~l~~~--------~-----~~~v~gvd~ 65 (272) |--.||+. +..+.++..-.+. .+-++.. -.+.-+|+|+|-|+|.......+. + ..+++++|. T Consensus 23 f~d~y~s~-~~~~~e~~~~f~~~~~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~ 101 (662) T PRK01747 23 FDDVYFSN-DNGLEETRYVFLGGNGLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEK 101 (662) T ss_pred CCCcccCC-CCHHHHhhhhhhcCCCHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEEC Confidence 33445554 4457777775542 2233331 234479999999999866554421 2 248999997 Q ss_pred CH---HHHHHH-----------HHHHHH-----cCC------CC--CeEEEEcccCCCC--CCCCccEEEEechhhccCh Q 024096 66 SE---EQLKYA-----------EIKVRE-----AGL------QD--HIRFYLCDYRQLP--KANKYDRIISCGMIEHVGH 116 (272) Q Consensus 66 s~---~~~~~a-----------~~~~~~-----~g~------~~--~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~ 116 (272) .| +.+..+ ++.... .|+ .+ +++...+|+.+.- ....+|+++...--..-.+ T Consensus 102 ~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np 181 (662) T PRK01747 102 FPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNP 181 (662) T ss_pred CCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccCh Confidence 54 222222 222111 121 11 3456778876543 2356999998642221100 Q ss_pred hh-HHHHHHHHHhcCccCcEEE Q 024096 117 DY-MEEFFGCCESLLATHGLLV 137 (272) Q Consensus 117 ~~-~~~~l~~~~~~LkpgG~l~ 137 (272) +- -..+++++.++++|||.+. T Consensus 182 ~~W~~~~~~~l~~~~~~~~~~~ 203 (662) T PRK01747 182 DMWSPNLFNALARLARPGATLA 203 (662) T ss_pred hhccHHHHHHHHHHhCCCCEEE Confidence 11 1689999999999999987 No 294 >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... Probab=96.32 E-value=0.015 Score=47.64 Aligned_cols=57 Identities=30% Similarity=0.385 Sum_probs=42.4 Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHH Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEI 75 (272) Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~ 75 (272) +-....++.+++... .+|+.|||.-||+|..+....+. +.+.+|+|+++...+.|++ T Consensus 175 ~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231) T PF01555_consen 175 QKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231) T ss_dssp -S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH T ss_pred cCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC Confidence 444556677777654 67899999999999999877764 8899999999999998864 No 295 >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T Probab=96.27 E-value=0.075 Score=47.57 Aligned_cols=108 Identities=24% Similarity=0.265 Sum_probs=69.5 Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-c----CCCCCCC Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-Y----RQLPKAN 100 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-~----~~~~~~~ 100 (272) +...+.++.+||..|||. |..+..+++..+. ++++++.+++..+.+++.. +. ..+.....+ + .+..... T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~~~~ 253 (386) T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELTGGR 253 (386) T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHcCCC Confidence 455677899999999997 8888889888665 6999999998888877642 11 111111111 1 1111234 Q ss_pred CccEEEEechhh-----------cc--ChhhHHHHHHHHHhcCccCcEEEEE Q 024096 101 KYDRIISCGMIE-----------HV--GHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 101 ~fD~V~~~~~~~-----------~~--~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+|+|+-.-.-+ |. +..+....++++.+.|+++|+++.. T Consensus 254 ~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386) T cd08283 254 GPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386) T ss_pred CCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE Confidence 689887742111 11 0011255788889999999999874 No 296 >PRK13699 putative methylase; Provisional Probab=96.27 E-value=0.025 Score=46.86 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=49.2 Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272) Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272) .-...++.+++... .+|+.|||.-||+|..+....+. +.+.+|+|+++...+.+.+++... T Consensus 148 kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227) T PRK13699 148 KPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227) T ss_pred CcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH Confidence 33445566666544 57899999999999998877764 889999999999999999888654 No 297 >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B. Probab=96.23 E-value=0.02 Score=48.24 Aligned_cols=88 Identities=23% Similarity=0.336 Sum_probs=57.1 Q ss_pred HHHHHcCCC-CCCEEEEECCCchHHHHHHHHc-c--------CCEEEEEcCCHHHHHHHHHHHHHc-----CCCCCeEEE Q 024096 25 VLIEKARVS-KGQEVLDIGCGWGTLAIEIVKQ-T--------GCKYTGITLSEEQLKYAEIKVREA-----GLQDHIRFY 89 (272) Q Consensus 25 ~l~~~l~~~-~~~~vLDiG~G~G~~~~~l~~~-~--------~~~v~gvd~s~~~~~~a~~~~~~~-----g~~~~i~~~ 89 (272) ...+.+... ...+|+|+|+|+|.++..+.+. . ..+++.+|+||.+.+.-++++... ....++.+ T Consensus 8 ~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w- 86 (252) T PF02636_consen 8 QMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW- 86 (252) T ss_dssp HHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE- T ss_pred HHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch- Confidence 344555422 2479999999999999988764 1 258999999999988888887542 12335666 Q ss_pred EcccCCCCCCCCccEEEEechhhccCh Q 024096 90 LCDYRQLPKANKYDRIISCGMIEHVGH 116 (272) Q Consensus 90 ~~d~~~~~~~~~fD~V~~~~~~~~~~~ 116 (272) ..++.+.| ..-+|++++++..+|. T Consensus 87 ~~~l~~~p---~~~~iiaNE~~DAlP~ 110 (252) T PF02636_consen 87 LDDLEEVP---FPGFIIANELFDALPV 110 (252) T ss_dssp ESSGGCS----CCEEEEEESSGGGS-- T ss_pred hhhhhccc---CCEEEEEeeehhcCce Confidence 33444443 5678899999988864 No 298 >COG4301 Uncharacterized conserved protein [Function unknown] Probab=96.14 E-value=0.096 Score=43.37 Aligned_cols=108 Identities=11% Similarity=0.110 Sum_probs=74.3 Q ss_pred CCCCCEEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC-CCc Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KA-NKY 102 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~-~~f 102 (272) +..+.+.+|+|+|+..-+..|... .-.+++.+|+|...+....+.+...-..-.+.-+++|.+..- +. ++= T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~R 155 (321) T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRR 155 (321) T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeE Confidence 345789999999999877776554 236899999999887654444433222123566777765422 21 222 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) =.++...++-++.+.+...++.++...|+||-++++- T Consensus 156 l~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321) T COG4301 156 LFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321) T ss_pred EEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe Confidence 2344455777887788889999999999999999984 No 299 >PTZ00357 methyltransferase; Provisional Probab=96.13 E-value=0.054 Score=51.08 Aligned_cols=98 Identities=17% Similarity=0.339 Sum_probs=67.6 Q ss_pred EEEEECCCchHHHHHHHHc-----cCCEEEEEcCCHHHHHHHHHHH-HHcCC-------CCCeEEEEcccCCCCCC---- Q 024096 37 EVLDIGCGWGTLAIEIVKQ-----TGCKYTGITLSEEQLKYAEIKV-REAGL-------QDHIRFYLCDYRQLPKA---- 99 (272) Q Consensus 37 ~vLDiG~G~G~~~~~l~~~-----~~~~v~gvd~s~~~~~~a~~~~-~~~g~-------~~~i~~~~~d~~~~~~~---- 99 (272) .|+-+|+|.|-+.....+. ...++++||.++..+.....+. ....+ .++|+++..|+.....+ T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072) T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072) T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc Confidence 5899999999876655443 2368999999977555544443 22234 23599999999988521 Q ss_pred --------CCccEEEEechhhccChhhH-HHHHHHHHhcCcc----CcE Q 024096 100 --------NKYDRIISCGMIEHVGHDYM-EEFFGCCESLLAT----HGL 135 (272) Q Consensus 100 --------~~fD~V~~~~~~~~~~~~~~-~~~l~~~~~~Lkp----gG~ 135 (272) +++|+|+| +.+--++++++ ++.|.-+.+.||+ +|. T Consensus 783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072) T PTZ00357 783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072) T ss_pred cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc Confidence 27999988 34445555544 6788888888887 776 No 300 >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio Probab=96.06 E-value=0.051 Score=47.24 Aligned_cols=96 Identities=24% Similarity=0.324 Sum_probs=64.8 Q ss_pred HcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC------CCCCCC Q 024096 29 KARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ------LPKANK 101 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~------~~~~~~ 101 (272) ...+.++.+||..|+| .|..+..+++..+.++++++.++...+.+++. |.. .+....-.. ...... T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~ 232 (338) T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL----GAD---EVLNSLDDSPKDKKAAGLGGG 232 (338) T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh----CCC---EEEcCCCcCHHHHHHHhcCCC Confidence 3347788999999887 47888888888788999999999888777542 431 111111001 113457 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +|+|+... +. ...++++.+.|+++|+++.. T Consensus 233 ~D~vid~~-----g~---~~~~~~~~~~l~~~G~~v~~ 262 (338) T cd08254 233 FDVIFDFV-----GT---QPTFEDAQKAVKPGGRIVVV 262 (338) T ss_pred ceEEEECC-----CC---HHHHHHHHHHhhcCCEEEEE Confidence 89887531 11 35677788999999999874 No 301 >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] Probab=95.99 E-value=0.063 Score=46.98 Aligned_cols=100 Identities=20% Similarity=0.147 Sum_probs=78.2 Q ss_pred CCEEEEECCCchHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechh Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMI 111 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~ 111 (272) ..+|+|.=||+|.=++..+.+.+ .+++.-|+||..++.+++|.+.|.. .+...++.|+..+- ....||+|=... T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiDP-- 129 (380) T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDIDP-- 129 (380) T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecCC-- Confidence 67999999999999998888844 4999999999999999999998833 35666768876665 237899887643 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ++ .+..++....+.++.||.+.++.. T Consensus 130 --FG--SPaPFlDaA~~s~~~~G~l~vTAT 155 (380) T COG1867 130 --FG--SPAPFLDAALRSVRRGGLLCVTAT 155 (380) T ss_pred --CC--CCchHHHHHHHHhhcCCEEEEEec Confidence 21 235677788888899999998543 No 302 >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] Probab=95.93 E-value=0.2 Score=44.37 Aligned_cols=98 Identities=20% Similarity=0.157 Sum_probs=66.3 Q ss_pred CCCCCEEEEECCCc-hHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC--------CCCCCCC Q 024096 32 VSKGQEVLDIGCGW-GTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR--------QLPKANK 101 (272) Q Consensus 32 ~~~~~~vLDiG~G~-G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~--------~~~~~~~ 101 (272) ..++.+|+=+|||+ |.++..+++.. ..+|+.+|.++..++.|++... .....-... +...... T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g-------~~~~~~~~~~~~~~~~~~~t~g~g 238 (350) T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG-------ADVVVNPSEDDAGAEILELTGGRG 238 (350) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC-------CeEeecCccccHHHHHHHHhCCCC Confidence 34555999999995 66667777774 4689999999999999988531 121111111 1112246 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCC Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 144 (272) +|+++-.-. . ...+..+.+.++|+|.+++.-+... T Consensus 239 ~D~vie~~G---~-----~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350) T COG1063 239 ADVVIEAVG---S-----PPALDQALEALRPGGTVVVVGVYGG 273 (350) T ss_pred CCEEEECCC---C-----HHHHHHHHHHhcCCCEEEEEeccCC Confidence 999986433 1 4578888999999999998655533 No 303 >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. Probab=95.92 E-value=0.13 Score=44.90 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=63.0 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRII 106 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272) ....+++|.+||=.|+| .|..+..+++..++++++++.+++..+.+++. |.. .++ |..+. ..+.+|+++ T Consensus 159 ~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~----Ga~---~vi--~~~~~-~~~~~d~~i 228 (329) T TIGR02822 159 LRASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALAL----GAA---SAG--GAYDT-PPEPLDAAI 228 (329) T ss_pred HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHh----CCc---eec--ccccc-CcccceEEE Confidence 45677889999999976 45566777777788999999998877766653 432 111 11111 124578766 Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) .... . ...+....+.|+++|++++.- T Consensus 229 ~~~~---~-----~~~~~~~~~~l~~~G~~v~~G 254 (329) T TIGR02822 229 LFAP---A-----GGLVPPALEALDRGGVLAVAG 254 (329) T ss_pred ECCC---c-----HHHHHHHHHhhCCCcEEEEEe Confidence 4322 1 235777888999999998743 No 304 >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Probab=95.77 E-value=0.031 Score=45.63 Aligned_cols=93 Identities=14% Similarity=0.195 Sum_probs=65.5 Q ss_pred CCEEEEECCCchHHHHHHHHc-cC---------CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------- Q 024096 35 GQEVLDIGCGWGTLAIEIVKQ-TG---------CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------- 97 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~-~~---------~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------- 97 (272) -.+++|++...|.++..|.++ .. .++++||+.+- ..+ +.|..+++|+.... T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI-~GV~qlq~DIT~~stae~Ii~ 109 (294) T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------API-EGVIQLQGDITSASTAEAIIE 109 (294) T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------Ccc-CceEEeecccCCHhHHHHHHH Confidence 369999999999999999876 21 13999998651 123 36788999987754 Q ss_pred --CCCCccEEEEech-----hhccCh----hhHHHHHHHHHhcCccCcEEEEE Q 024096 98 --KANKYDRIISCGM-----IEHVGH----DYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 --~~~~fD~V~~~~~-----~~~~~~----~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..++.|+|+|.+. +|.++. +-+...+.-...+|||||.++.- T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294) T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294) T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh Confidence 3468999999874 333311 11234556667899999999853 No 305 >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known. Probab=95.75 E-value=0.18 Score=39.58 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=74.5 Q ss_pred ECCCchHHHHHHHHc-c-CCEEEEE--cCCHHHHHH---HHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe Q 024096 41 IGCGWGTLAIEIVKQ-T-GCKYTGI--TLSEEQLKY---AEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272) Q Consensus 41 iG~G~G~~~~~l~~~-~-~~~v~gv--d~s~~~~~~---a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272) +|=|.=+++..|++. . +..+++. |...+..+. +.+++....-.+-.-....|+.++. ....||.|+-+ T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166) T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166) T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe Confidence 455555667777776 3 4455544 443333322 2234433311112234566777766 24789999987 Q ss_pred chhhccC------h-------hhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCCCCCHHHHH Q 024096 109 GMIEHVG------H-------DYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGCLPSLGRVT 175 (272) Q Consensus 109 ~~~~~~~------~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 175 (272) . .|.+ . +-+..+++.+..+|+++|.+.|+-..... + ..+.. T Consensus 83 F--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p--y------------------~~W~i---- 136 (166) T PF10354_consen 83 F--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP--Y------------------DSWNI---- 136 (166) T ss_pred C--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC--C------------------ccccH---- Confidence 5 4555 1 22456899999999999999995433211 0 00122 Q ss_pred HHhhcCCCcEEEEEEecCc Q 024096 176 SAMTSSSGLCVEHLENIGI 194 (272) Q Consensus 176 ~~l~~~~Gf~v~~~~~~~~ 194 (272) ..+++++||.+.....+.. T Consensus 137 ~~lA~~~gl~l~~~~~F~~ 155 (166) T PF10354_consen 137 EELAAEAGLVLVRKVPFDP 155 (166) T ss_pred HHHHHhcCCEEEEEecCCH Confidence 2456679999988877653 No 306 >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] Probab=95.73 E-value=0.0091 Score=53.86 Aligned_cols=101 Identities=20% Similarity=0.171 Sum_probs=82.8 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEE Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRII 106 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~ 106 (272) ++.+|||.=|++|.-++..+.+ ++ .+|++.|.++..++..+++.+.++..+.++..+.|+..+- ....||+|- T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525) T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525) T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe Confidence 5679999999999999998888 55 4799999999999999999999988888888888876543 347899997 Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ...-- ....+++...+.++.||.++++. T Consensus 189 LDPyG------s~s~FLDsAvqav~~gGLL~vT~ 216 (525) T KOG1253|consen 189 LDPYG------SPSPFLDSAVQAVRDGGLLCVTC 216 (525) T ss_pred cCCCC------CccHHHHHHHHHhhcCCEEEEEe Confidence 64321 12578888888899999999854 No 307 >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] Probab=95.68 E-value=0.15 Score=43.87 Aligned_cols=108 Identities=22% Similarity=0.204 Sum_probs=70.3 Q ss_pred HHHHHcCCCCCCEEEEECCCc-hHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-c-cCCC---- Q 024096 25 VLIEKARVSKGQEVLDIGCGW-GTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-D-YRQL---- 96 (272) Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d-~~~~---- 96 (272) +...+...+.|.+||-+|+|+ |..+...|+..| .+|+.+|+++..++.|++. |.. .+..... + ...+ T Consensus 160 HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~----Ga~-~~~~~~~~~~~~~~~~~v 234 (354) T KOG0024|consen 160 HACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF----GAT-VTDPSSHKSSPQELAELV 234 (354) T ss_pred hhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh----CCe-EEeeccccccHHHHHHHH Confidence 445666788999999999994 666666677655 5899999999999999983 321 1111111 1 1110 Q ss_pred C---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 97 P---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 97 ~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) . ....+|+.+....++ ..++.....++.||.+++..+..+. T Consensus 235 ~~~~g~~~~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354) T KOG0024|consen 235 EKALGKKQPDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEE 278 (354) T ss_pred HhhccccCCCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCCc Confidence 1 224588888764333 3444456678999998887665443 No 308 >cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai Probab=95.67 E-value=0.11 Score=45.72 Aligned_cols=98 Identities=17% Similarity=0.187 Sum_probs=60.7 Q ss_pred cCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcC---CHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE Q 024096 30 ARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITL---SEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272) Q Consensus 30 l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~---s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272) ....++.+||-+|+| .|.++..+++..++++++++. ++...+.+++ .|.. .+.....+..+......+|+| T Consensus 168 ~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~~~~~~~~d~v 242 (355) T cd08230 168 LPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAEVKLVGEFDLI 242 (355) T ss_pred cccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhhhhhcCCCCEE Confidence 345688999999987 466777788777889999986 5666665543 2431 111111111111112468888 Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +-. .+. ...+....+.|+++|++++.. T Consensus 243 id~-----~g~---~~~~~~~~~~l~~~G~~v~~G 269 (355) T cd08230 243 IEA-----TGV---PPLAFEALPALAPNGVVILFG 269 (355) T ss_pred EEC-----cCC---HHHHHHHHHHccCCcEEEEEe Confidence 864 221 246777888999999988643 No 309 >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( Probab=95.58 E-value=0.12 Score=45.48 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=59.9 Q ss_pred cCCCCCCEEEEECCC-chHHHHHHHHc-c-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE Q 024096 30 ARVSKGQEVLDIGCG-WGTLAIEIVKQ-T-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRII 106 (272) Q Consensus 30 l~~~~~~~vLDiG~G-~G~~~~~l~~~-~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272) +...++++||-+||| .|.++..++++ . +.+|+++|.++...+.+++ .+. .... .+......+|+|+ T Consensus 159 ~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~~~~----~~~~~~~g~d~vi 227 (341) T cd08237 159 IAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---TYLI----DDIPEDLAVDHAF 227 (341) T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---eeeh----hhhhhccCCcEEE Confidence 345789999999987 34455666664 3 4689999999887777754 221 1111 1122222588887 Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) -. .+.......+....+.|+++|++++.- T Consensus 228 D~-----~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341) T cd08237 228 EC-----VGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341) T ss_pred EC-----CCCCccHHHHHHHHHhCcCCcEEEEEe Confidence 43 221111456778888999999998743 No 310 >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. Probab=95.57 E-value=0.037 Score=49.30 Aligned_cols=65 Identities=12% Similarity=0.206 Sum_probs=56.4 Q ss_pred cCCCCCeEEEEcccCCCC---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 80 AGLQDHIRFYLCDYRQLP---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 80 ~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) .++ ++++++++++.+.. +++++|.++......+++++...+.++++.+.++|||++++-....+. T Consensus 272 ~~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380) T PF11899_consen 272 ARL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380) T ss_pred cCC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC Confidence 345 69999999998865 578999999999999999999999999999999999999996655443 No 311 >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at Probab=95.57 E-value=0.07 Score=46.66 Aligned_cols=98 Identities=26% Similarity=0.329 Sum_probs=63.0 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc------CCCCC Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY------RQLPK 98 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~------~~~~~ 98 (272) +..+.+.++.+||=+|+| .|..+..+++..+++ |++++.+++..+.+++. |.. .++...- .+... T Consensus 156 l~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~----ga~---~~i~~~~~~~~~~~~~~~ 228 (339) T cd08239 156 LRRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKAL----GAD---FVINSGQDDVQEIRELTS 228 (339) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCC---EEEcCCcchHHHHHHHhC Confidence 456677889999999876 445666677777777 99999998887777543 431 2221111 11112 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ...+|+|+-. .+. ...+....+.|+++|++++. T Consensus 229 ~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 261 (339) T cd08239 229 GAGADVAIEC-----SGN---TAARRLALEAVRPWGRLVLV 261 (339) T ss_pred CCCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE Confidence 3469998853 221 23456667789999999864 No 312 >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. Probab=95.57 E-value=0.059 Score=49.78 Aligned_cols=94 Identities=19% Similarity=0.219 Sum_probs=62.3 Q ss_pred CCCEEEEECCCch-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC----------------- Q 024096 34 KGQEVLDIGCGWG-TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ----------------- 95 (272) Q Consensus 34 ~~~~vLDiG~G~G-~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~----------------- 95 (272) ++.+|+=+|+|.- ..+..+++..|+.|+++|.++...+.++.. | .+++..|..+ T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l----G----a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511) T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM----G----AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511) T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEeccccccccccccceeecCHHHH Confidence 6789999999955 555556666788999999999877766642 3 2332333211 Q ss_pred ------CC-CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE Q 024096 96 ------LP-KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 96 ------~~-~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) ++ .-..+|+|+..-.+..- +.+.-+.++..+.+|||+.++ T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~--~aP~Lit~emv~~MKpGsvIV 281 (511) T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGK--PAPKLITEEMVDSMKAGSVIV 281 (511) T ss_pred HHHHHHHHHHhCCCCEEEECcccCCC--CCCeeehHHHHhhCCCCCEEE Confidence 11 12569999876544443 223446777889999999876 No 313 >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species. Probab=95.56 E-value=0.012 Score=45.32 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=61.3 Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHH-HHHHHHHcCCCCCe-EEEEcccCC-CC-CCCCccEEEEech Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKY-AEIKVREAGLQDHI-RFYLCDYRQ-LP-KANKYDRIISCGM 110 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~-a~~~~~~~g~~~~i-~~~~~d~~~-~~-~~~~fD~V~~~~~ 110 (272) +++++-+|+..=-.-....+...+++..+|-++--++. .+. ++ .+...|+.. .. ..++||.+.|..+ T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~d---------r~ssi~p~df~~~~~~y~~~fD~~as~~s 72 (177) T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRD---------RLSSILPVDFAKNWQKYAGSFDFAASFSS 72 (177) T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccc---------ccccccHHHHHHHHHHhhccchhhheech Confidence 56788888874333333333344578888865522111 111 11 122223221 11 2478999999999 Q ss_pred hhccCh---------hhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 111 IEHVGH---------DYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 111 ~~~~~~---------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) ++|++- .--...+.++.++|||||.+++..+..++ T Consensus 73 iEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d 116 (177) T PF03269_consen 73 IEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD 116 (177) T ss_pred hccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc Confidence 999821 11146788899999999999998777554 No 314 >KOG2920 consensus Predicted methyltransferase [General function prediction only] Probab=95.56 E-value=0.014 Score=49.12 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=68.9 Q ss_pred HHHHHHHHHc--C-CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHH-------HHHH--HcCCCCCeEE Q 024096 21 RKVSVLIEKA--R-VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAE-------IKVR--EAGLQDHIRF 88 (272) Q Consensus 21 ~~~~~l~~~l--~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~-------~~~~--~~g~~~~i~~ 88 (272) ..+..+.+.+ . ...+++|||+|||.|...+.........+...|.+...++... -.+. ......-..+ T Consensus 100 dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i 179 (282) T KOG2920|consen 100 DLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEI 179 (282) T ss_pred HHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceec Confidence 3445555443 1 2478899999999999988887764478888888877762111 0110 0000011222 Q ss_pred EEc---ccCCCCCC-CCccEEEEechhhccChhhHHHH-HHHHHhcCccCcEEEE Q 024096 89 YLC---DYRQLPKA-NKYDRIISCGMIEHVGHDYMEEF-FGCCESLLATHGLLVL 138 (272) Q Consensus 89 ~~~---d~~~~~~~-~~fD~V~~~~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~i 138 (272) .+. |....... ..||+|.+..++.... ....+ .......++++|.+++ T Consensus 180 ~~s~l~dg~~~~t~~~~ydlIlsSetiy~~~--~~~~~~~~~r~~l~~~D~~~~~ 232 (282) T KOG2920|consen 180 LNSLLSDGVFNHTERTHYDLILSSETIYSID--SLAVLYLLHRPCLLKTDGVFYV 232 (282) T ss_pred cccccccchhhhccccchhhhhhhhhhhCcc--hhhhhHhhhhhhcCCccchhhh Confidence 333 22111111 2899999999888773 33444 5566778889998876 No 315 >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] Probab=95.52 E-value=0.014 Score=51.79 Aligned_cols=64 Identities=22% Similarity=0.440 Sum_probs=56.4 Q ss_pred CCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEcccCCC Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH-IRFYLCDYRQL 96 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~-i~~~~~d~~~~ 96 (272) .++|..|-|+-||.|-++..++.+ +++|++.|++++++++.+.++..+.+.+. +++...|+... T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495) T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495) T ss_pred cCCcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH Confidence 468999999999999999999987 79999999999999999999988877554 88888886543 No 316 >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Probab=95.50 E-value=0.14 Score=44.22 Aligned_cols=122 Identities=16% Similarity=0.237 Sum_probs=85.5 Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEcccCC Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL--QDHIRFYLCDYRQ 95 (272) Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~ 95 (272) +....++..+...-......|+-+|||-=.=+..+-...+.+|+-+|. |+.++.=++.+...+. +.+.+.+..|+.+ T Consensus 76 ~Rtr~fD~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~ 154 (297) T COG3315 76 ARTRYFDDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLRE 154 (297) T ss_pred HHHHHHHHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccc Confidence 344445444444322236899999999744444333323456666664 7788887777777653 3478999999985 Q ss_pred CC-----C-----CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 96 LP-----K-----ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 96 ~~-----~-----~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) -. . .+.--++++.+++.+++.+...++++.+.....||..+++.. T Consensus 155 ~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297) T COG3315 155 DDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297) T ss_pred cchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec Confidence 43 2 244558888999999999999999999999999999988754 No 317 >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. Probab=95.49 E-value=0.089 Score=46.51 Aligned_cols=99 Identities=24% Similarity=0.305 Sum_probs=63.6 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CC Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LP 97 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~ 97 (272) .+...+.++.+||=.|+| .|..+..+++..++ +|+++|.++...+.+++. |.. .++...-.+ .. T Consensus 169 ~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~i~~~~ 241 (358) T TIGR03451 169 VNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF----GAT---HTVNSSGTDPVEAIRALT 241 (358) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcCCCcCHHHHHHHHh Confidence 344567889999999986 45666777777777 599999999888877543 431 222111111 11 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ....+|+|+-. .+. ...++...+.++++|++++.- T Consensus 242 ~~~g~d~vid~-----~g~---~~~~~~~~~~~~~~G~iv~~G 276 (358) T TIGR03451 242 GGFGADVVIDA-----VGR---PETYKQAFYARDLAGTVVLVG 276 (358) T ss_pred CCCCCCEEEEC-----CCC---HHHHHHHHHHhccCCEEEEEC Confidence 22468988753 221 235666778899999998743 No 318 >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd Probab=95.30 E-value=0.11 Score=46.31 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=63.8 Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C-- Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P-- 97 (272) Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~-- 97 (272) +.+...+.++.+||=.|+| .|..+..+++..++ +|+++|.++...+.+++. |.. .++..+-.+. . T Consensus 183 ~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~i~~~ 255 (371) T cd08281 183 VVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL----GAT---ATVNAGDPNAVEQVREL 255 (371) T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc----CCc---eEeCCCchhHHHHHHHH Confidence 3455667889999999986 45566777777777 699999999888877643 431 2222111111 1 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+.+|+|+-. .+. ...+....+.|+++|++++. T Consensus 256 ~~~g~d~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~ 289 (371) T cd08281 256 TGGGVDYAFEM-----AGS---VPALETAYEITRRGGTTVTA 289 (371) T ss_pred hCCCCCEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEE Confidence 12368988753 211 24566677889999999864 No 319 >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. Probab=95.29 E-value=0.046 Score=46.63 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=52.7 Q ss_pred EEEEECCCchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC---CCCccEEEEechhh Q 024096 37 EVLDIGCGWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK---ANKYDRIISCGMIE 112 (272) Q Consensus 37 ~vLDiG~G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~---~~~fD~V~~~~~~~ 112 (272) +|+|+.||.|+++.-+.+. |. .+.++|+++..++..+.+.. . .++++|+.++.. ...+|+++...... T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~------~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq 73 (275) T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFP------N-KLIEGDITKIDEKDFIPDIDLLTGGFPCQ 73 (275) T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCC------C-CCccCccccCchhhcCCCCCEEEeCCCCh Confidence 6999999999998888776 44 57889999998888777642 1 267788887762 35799999887544 Q ss_pred c Q 024096 113 H 113 (272) Q Consensus 113 ~ 113 (272) . T Consensus 74 ~ 74 (275) T cd00315 74 P 74 (275) T ss_pred h Confidence 3 No 320 >KOG1227 consensus Putative methyltransferase [General function prediction only] Probab=95.27 E-value=0.0082 Score=50.79 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=63.5 Q ss_pred CCCEEEEECCCchHHHH-HHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEe Q 024096 34 KGQEVLDIGCGWGTLAI-EIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~-~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272) .+..|+|+=+|.|.++. .+.......|.++|.+|..++..+++++.++..++..+..+|-....+....|.|... T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG 269 (351) T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG 269 (351) T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec Confidence 45899999999999998 6666545689999999999999999999988777788888887776677888988764 No 321 >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD:alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A .... Probab=95.19 E-value=0.083 Score=39.18 Aligned_cols=84 Identities=26% Similarity=0.319 Sum_probs=59.0 Q ss_pred CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-------CCCCccEEEEechhhccCh Q 024096 44 GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-------KANKYDRIISCGMIEHVGH 116 (272) Q Consensus 44 G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-------~~~~fD~V~~~~~~~~~~~ 116 (272) |.|..+..+++..|++|+++|.++.-.+.+++. |. ..+...+-.+.. ....+|+|+-. .+. T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~----Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----~g~ 68 (130) T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL----GA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDC-----VGS 68 (130) T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----TE---SEEEETTTSSHHHHHHHHTTTSSEEEEEES-----SSS T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh----cc---cccccccccccccccccccccccceEEEEe-----cCc Confidence 468899999988779999999999888887754 31 233333322111 23579999864 331 Q ss_pred hhHHHHHHHHHhcCccCcEEEEEeec Q 024096 117 DYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 117 ~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) ...++.....|+++|++++.... T Consensus 69 ---~~~~~~~~~~l~~~G~~v~vg~~ 91 (130) T PF00107_consen 69 ---GDTLQEAIKLLRPGGRIVVVGVY 91 (130) T ss_dssp ---HHHHHHHHHHEEEEEEEEEESST T ss_pred ---HHHHHHHHHHhccCCEEEEEEcc Confidence 46788888999999999985443 No 322 >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] Probab=95.15 E-value=0.25 Score=43.22 Aligned_cols=103 Identities=26% Similarity=0.371 Sum_probs=66.8 Q ss_pred HHHHHHcCCCCCCEEEEEC--CCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C Q 024096 24 SVLIEKARVSKGQEVLDIG--CGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P 97 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG--~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~ 97 (272) ..+.+...+++|.+||=.| .|.|.++.+|++..+..++++.-+++-.+.+++. |-..-+.+...|+.+- . T Consensus 132 ~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~l----GAd~vi~y~~~~~~~~v~~~t 207 (326) T COG0604 132 LALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKEL----GADHVINYREEDFVEQVRELT 207 (326) T ss_pred HHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhc----CCCEEEcCCcccHHHHHHHHc Confidence 4445556788899999998 4467889999998765777777677555544443 4322233333433221 1 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ....+|+|+-. ++ ...+.+....|+++|+++.. T Consensus 208 ~g~gvDvv~D~-----vG----~~~~~~~l~~l~~~G~lv~i 240 (326) T COG0604 208 GGKGVDVVLDT-----VG----GDTFAASLAALAPGGRLVSI 240 (326) T ss_pred CCCCceEEEEC-----CC----HHHHHHHHHHhccCCEEEEE Confidence 33479999963 33 35566677888999999874 No 323 >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Probab=95.13 E-value=0.15 Score=43.33 Aligned_cols=99 Identities=22% Similarity=0.199 Sum_probs=62.6 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-c----cCCCCCC Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-D----YRQLPKA 99 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d----~~~~~~~ 99 (272) ++.....++.+||=+|+| .|..+..+++..+++ |+++|.++...+.+++. |.. .++.. + +.+.... T Consensus 113 l~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~~~~ 185 (280) T TIGR03366 113 LEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF----GAT---ALAEPEVLAERQGGLQNG 185 (280) T ss_pred HHhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCc---EecCchhhHHHHHHHhCC Confidence 445555688999999886 455666777766765 99999988877776653 321 11111 1 1111122 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ..+|+|+-. .+. ...++...+.|+++|++++.- T Consensus 186 ~g~d~vid~-----~G~---~~~~~~~~~~l~~~G~iv~~G 218 (280) T TIGR03366 186 RGVDVALEF-----SGA---TAAVRACLESLDVGGTAVLAG 218 (280) T ss_pred CCCCEEEEC-----CCC---hHHHHHHHHHhcCCCEEEEec Confidence 468988753 221 346677788899999998743 No 324 >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro Probab=95.03 E-value=0.13 Score=42.92 Aligned_cols=97 Identities=27% Similarity=0.351 Sum_probs=62.0 Q ss_pred HHcC-CCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC------CCC Q 024096 28 EKAR-VSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL------PKA 99 (272) Q Consensus 28 ~~l~-~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~------~~~ 99 (272) ..+. +.++.+||..|+|. |.....+++..+.++++++.++...+.+++. +.. .++....... ... T Consensus 127 ~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 199 (271) T cd05188 127 RRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GAD---HVIDYKEEDLEEELRLTGG 199 (271) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCc---eeccCCcCCHHHHHHHhcC Confidence 3344 37889999999985 7777777777788999999998777666443 211 1111111111 123 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+|+|+.. .+. ...+..+.+.|+++|.++.. T Consensus 200 ~~~d~vi~~-----~~~---~~~~~~~~~~l~~~G~~v~~ 231 (271) T cd05188 200 GGADVVIDA-----VGG---PETLAQALRLLRPGGRIVVV 231 (271) T ss_pred CCCCEEEEC-----CCC---HHHHHHHHHhcccCCEEEEE Confidence 579999864 221 13566677888999998863 No 325 >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... Probab=94.99 E-value=0.2 Score=36.33 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=56.7 Q ss_pred CCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEechhhcc Q 024096 43 CGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISCGMIEHV 114 (272) Q Consensus 43 ~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~~~~~~~ 114 (272) ||.|..+..+++. .+.+++.+|.+++.++.+++. .+.++.+|..+.. .-++.|.|++.. T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116) T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116) T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEES----- T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEcc----- Confidence 5666777777665 345899999999988777654 4789999998765 336788888753 Q ss_pred ChhhHHHHHHHHHhcCccCcEEEEE Q 024096 115 GHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +++.....+....+.+.|...+++. T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116) T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIAR 95 (116) T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEE T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEE Confidence 2233344555556667788888763 No 326 >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Probab=94.89 E-value=0.29 Score=42.53 Aligned_cols=98 Identities=23% Similarity=0.374 Sum_probs=64.7 Q ss_pred HHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc----cCCC-C- Q 024096 26 LIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD----YRQL-P- 97 (272) Q Consensus 26 l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d----~~~~-~- 97 (272) +.+...+.+|.+||=.|. |.|..+..+++..|+++++++.+++..+.+++ .|.. .++..+ ..+. . T Consensus 130 l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~ 202 (325) T TIGR02825 130 LLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGFD---VAFNYKTVKSLEETLKK 202 (325) T ss_pred HHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeccccccHHHHHHH Confidence 345567889999999984 47788888888888899999988887777754 2431 222111 1110 0 Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+.+|+|+-. .+. ..+....+.|+++|+++.. T Consensus 203 ~~~~gvdvv~d~-----~G~----~~~~~~~~~l~~~G~iv~~ 236 (325) T TIGR02825 203 ASPDGYDCYFDN-----VGG----EFSNTVIGQMKKFGRIAIC 236 (325) T ss_pred hCCCCeEEEEEC-----CCH----HHHHHHHHHhCcCcEEEEe Confidence 22468888752 321 2356778889999999863 No 327 >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. Probab=94.84 E-value=0.16 Score=42.50 Aligned_cols=126 Identities=12% Similarity=0.119 Sum_probs=73.0 Q ss_pred CHHHHHHHHHHHHHHHcC-CCCCCEEEEECCCchHHHHHHHHc------cCCEEEEEcCCH------------------- Q 024096 14 DLEVGQMRKVSVLIEKAR-VSKGQEVLDIGCGWGTLAIEIVKQ------TGCKYTGITLSE------------------- 67 (272) Q Consensus 14 ~l~~aq~~~~~~l~~~l~-~~~~~~vLDiG~G~G~~~~~l~~~------~~~~v~gvd~s~------------------- 67 (272) .+.......+..+++.+- ..-...|+|+||-.|+.+..++.. .+.++.++|.-+ T Consensus 53 m~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~ 132 (248) T PF05711_consen 53 MIGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFH 132 (248) T ss_dssp SSHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCC T ss_pred ccCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhh Confidence 445566666777777764 222347999999999877665431 245788887432 Q ss_pred -------HHHHHHHHHHHHcCC-CCCeEEEEcccCC-CC--CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEE Q 024096 68 -------EQLKYAEIKVREAGL-QDHIRFYLCDYRQ-LP--KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLL 136 (272) Q Consensus 68 -------~~~~~a~~~~~~~g~-~~~i~~~~~d~~~-~~--~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 136 (272) ...+..++++...|+ .++++++.|.+.+ +| +.+++-++....=+. +.....|+.++..|.|||.+ T Consensus 133 ~~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY----esT~~aLe~lyprl~~GGiI 208 (248) T PF05711_consen 133 EYNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY----ESTKDALEFLYPRLSPGGII 208 (248) T ss_dssp GCCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH----HHHHHHHHHHGGGEEEEEEE T ss_pred hcccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch----HHHHHHHHHHHhhcCCCeEE Confidence 123444444444454 4589999999865 33 233443333322111 34468899999999999999 Q ss_pred EEEeecC Q 024096 137 VLQFISA 143 (272) Q Consensus 137 ~i~~~~~ 143 (272) ++.++.. T Consensus 209 i~DDY~~ 215 (248) T PF05711_consen 209 IFDDYGH 215 (248) T ss_dssp EESSTTT T ss_pred EEeCCCC Confidence 9976654 No 328 >cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai Probab=94.72 E-value=0.27 Score=42.87 Aligned_cols=96 Identities=17% Similarity=0.255 Sum_probs=61.5 Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc---cCCCC-CCCC Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD---YRQLP-KANK 101 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d---~~~~~-~~~~ 101 (272) ..+...++.+||-.|+|. |..+..+++..+. ++++++.++...+.+++. +.. .++..+ ..... .... T Consensus 159 ~~~~~~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~ 231 (339) T cd08232 159 NRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM----GAD---ETVNLARDPLAAYAADKGD 231 (339) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCC---EEEcCCchhhhhhhccCCC Confidence 344444788999998875 6677778877777 799999988877755442 321 222111 11222 2245 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) +|+|+..... ...++.+.+.|+++|+++. T Consensus 232 vd~vld~~g~--------~~~~~~~~~~L~~~G~~v~ 260 (339) T cd08232 232 FDVVFEASGA--------PAALASALRVVRPGGTVVQ 260 (339) T ss_pred ccEEEECCCC--------HHHHHHHHHHHhcCCEEEE Confidence 8999864221 2356777888999999885 No 329 >PLN03154 putative allyl alcohol dehydrogenase; Provisional Probab=94.61 E-value=0.33 Score=42.84 Aligned_cols=97 Identities=21% Similarity=0.289 Sum_probs=64.2 Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc----ccCC-CC--C Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC----DYRQ-LP--K 98 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~----d~~~-~~--~ 98 (272) +...+.+|++||=.|+ |.|..+..+++..|+++++++.++...+.+++. .|.. .++.. +..+ +. . T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~ 225 (348) T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYF 225 (348) T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHC Confidence 4456789999999987 377888888888888999999888777666532 2432 22211 1111 11 1 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+.+|+|+-. .+ ...+..+.+.|+++|++++. T Consensus 226 ~~gvD~v~d~-----vG----~~~~~~~~~~l~~~G~iv~~ 257 (348) T PLN03154 226 PEGIDIYFDN-----VG----GDMLDAALLNMKIHGRIAVC 257 (348) T ss_pred CCCcEEEEEC-----CC----HHHHHHHHHHhccCCEEEEE Confidence 2468888753 32 13566778889999999863 No 330 >PLN02740 Alcohol dehydrogenase-like Probab=94.60 E-value=0.31 Score=43.51 Aligned_cols=98 Identities=22% Similarity=0.302 Sum_probs=62.2 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-----cCC-CC- Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-----YRQ-LP- 97 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-----~~~-~~- 97 (272) .+...+.++++||=+|+| .|..+..+++..++ +|+++|.++...+.+++. |.. .++... +.+ +. T Consensus 191 ~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~----Ga~---~~i~~~~~~~~~~~~v~~ 263 (381) T PLN02740 191 WNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM----GIT---DFINPKDSDKPVHERIRE 263 (381) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc----CCc---EEEecccccchHHHHHHH Confidence 344567889999999987 45566677777777 699999999888877553 432 222211 111 11 Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272) Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272) ..+.+|+|+-. .+. ...+......++++ |++++. T Consensus 264 ~~~~g~dvvid~-----~G~---~~~~~~a~~~~~~g~G~~v~~ 299 (381) T PLN02740 264 MTGGGVDYSFEC-----AGN---VEVLREAFLSTHDGWGLTVLL 299 (381) T ss_pred HhCCCCCEEEEC-----CCC---hHHHHHHHHhhhcCCCEEEEE Confidence 11268988753 321 24566666778886 988764 No 331 >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac Probab=94.41 E-value=0.32 Score=42.12 Aligned_cols=97 Identities=23% Similarity=0.334 Sum_probs=64.3 Q ss_pred HHHcCCCCCCEEEEEC--CCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C--C Q 024096 27 IEKARVSKGQEVLDIG--CGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P--K 98 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG--~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~--~ 98 (272) .+...+.+|.+||=.| .|.|..+..+++..|+++++++.+++..+.+++. |.. .++...-.+. . . T Consensus 136 ~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~----Ga~---~vi~~~~~~~~~~v~~~~ 208 (329) T cd08294 136 LEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKEL----GFD---AVFNYKTVSLEEALKEAA 208 (329) T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CCC---EEEeCCCccHHHHHHHHC Confidence 3556678899999988 3577788888888888999999888877777552 431 2222111111 0 1 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ...+|+|+-. .+ ...+....+.|+++|+++.. T Consensus 209 ~~gvd~vld~-----~g----~~~~~~~~~~l~~~G~iv~~ 240 (329) T cd08294 209 PDGIDCYFDN-----VG----GEFSSTVLSHMNDFGRVAVC 240 (329) T ss_pred CCCcEEEEEC-----CC----HHHHHHHHHhhccCCEEEEE Confidence 2468888753 22 23457778889999999763 No 332 >COG1568 Predicted methyltransferases [General function prediction only] Probab=94.40 E-value=0.2 Score=42.21 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=74.8 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEec Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCG 109 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~ 109 (272) .|..|+-+| -.-..++.++-. ...++..+|+++..+...++.+.+.|+ ++++...-|+.+.- ...+||+++... T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~plpe~~~~kFDvfiTDP 229 (354) T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRNPLPEDLKRKFDVFITDP 229 (354) T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcccChHHHHhhCCeeecCc Confidence 466799888 333444444443 456999999999999999999999998 47999999987744 237999988754 Q ss_pred hhhccChhhHHHHHHHHHhcCccC---cEEEEE Q 024096 110 MIEHVGHDYMEEFFGCCESLLATH---GLLVLQ 139 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~i~ 139 (272) + +.+ ..+..++.+--..||.. |++.++ T Consensus 230 p-eTi--~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354) T COG1568 230 P-ETI--KALKLFLGRGIATLKGEGCAGYFGIT 259 (354) T ss_pred h-hhH--HHHHHHHhccHHHhcCCCccceEeee Confidence 3 444 45577888877888877 677763 No 333 >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Probab=94.28 E-value=0.46 Score=41.80 Aligned_cols=101 Identities=25% Similarity=0.269 Sum_probs=61.5 Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---ccC----CCCCC Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---DYR----QLPKA 99 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d~~----~~~~~ 99 (272) ....+.++.+||-.|+|. |..+..+++..++++++++.++...+.+++. |...-+..... ++. +.... T Consensus 160 ~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~t~~ 235 (349) T TIGR03201 160 VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIKAFAKA 235 (349) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceEecCccccHHHHHHHHHhhccc Confidence 445678899999999974 6677777877788999999999888777543 43111111111 110 01111 Q ss_pred CCcc----EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 100 NKYD----RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 100 ~~fD----~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ..+| +|+ +..+. ...++...+.|++||++++.. T Consensus 236 ~g~d~~~d~v~-----d~~g~---~~~~~~~~~~l~~~G~iv~~G 272 (349) T TIGR03201 236 RGLRSTGWKIF-----ECSGS---KPGQESALSLLSHGGTLVVVG 272 (349) T ss_pred CCCCCCcCEEE-----ECCCC---hHHHHHHHHHHhcCCeEEEEC Confidence 2344 444 22222 245666777889999998753 No 334 >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity Probab=94.25 E-value=0.12 Score=37.13 Aligned_cols=32 Identities=34% Similarity=0.484 Sum_probs=27.2 Q ss_pred CCCCEEEEECCCchHHHHHHHHccCCEEEEEcC Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITL 65 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~ 65 (272) .+....+|+|||.|.+...|.+. |..-.|+|. T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~ 88 (112) T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE-GYPGWGIDA 88 (112) T ss_pred CCCCceEEccCCchHHHHHHHhC-CCCcccccc Confidence 35568999999999999988887 777789996 No 335 >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown. Probab=94.16 E-value=1 Score=36.65 Aligned_cols=108 Identities=17% Similarity=0.231 Sum_probs=68.2 Q ss_pred HHHHHcCCC-CCCEEEEECCCchH----HHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-CCC Q 024096 25 VLIEKARVS-KGQEVLDIGCGWGT----LAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-QLP 97 (272) Q Consensus 25 ~l~~~l~~~-~~~~vLDiG~G~G~----~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-~~~ 97 (272) .++..+.-. ....++++.|+.|. ++...|.+ .+.++++|-+++......++.+...++.+.++|+.++.. ++. T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~ 110 (218) T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM 110 (218) T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH Confidence 344444432 34688888665432 33333334 788999999999888888888888888767899998843 332 Q ss_pred -CCCCccEEEEechhhccChhhHH-HHHHHHHhcCccCcEEEEE Q 024096 98 -KANKYDRIISCGMIEHVGHDYME-EFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~-~~l~~~~~~LkpgG~l~i~ 139 (272) .-...|.++..--. ++.. .+|+.+. +.|.|.+++. T Consensus 111 ~~~~~iDF~vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~ 147 (218) T PF07279_consen 111 PGLKGIDFVVVDCKR-----EDFAARVLRAAK--LSPRGAVVVC 147 (218) T ss_pred hhccCCCEEEEeCCc-----hhHHHHHHHHhc--cCCCceEEEE Confidence 33678988875321 2223 4444322 4466777663 No 336 >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional Probab=94.11 E-value=0.41 Score=41.98 Aligned_cols=97 Identities=24% Similarity=0.337 Sum_probs=60.3 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc------CCCCCC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY------RQLPKA 99 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~------~~~~~~ 99 (272) +.....++.+||=.|+| .|..+..+++..+++ +++++.+++..+.+++. |.. .++..+- .+.... T Consensus 154 ~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~~~ 226 (347) T PRK10309 154 HLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL----GAM---QTFNSREMSAPQIQSVLRE 226 (347) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---eEecCcccCHHHHHHHhcC Confidence 44556788999999986 455666777777775 78999988877766432 321 2221111 111122 Q ss_pred CCcc-EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYD-RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD-~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+| +|+- ..+. ...+....+.|++||++++. T Consensus 227 ~~~d~~v~d-----~~G~---~~~~~~~~~~l~~~G~iv~~ 259 (347) T PRK10309 227 LRFDQLILE-----TAGV---PQTVELAIEIAGPRAQLALV 259 (347) T ss_pred CCCCeEEEE-----CCCC---HHHHHHHHHHhhcCCEEEEE Confidence 4577 4442 3332 34677788899999999874 No 337 >KOG2912 consensus Predicted DNA methylase [Function unknown] Probab=94.10 E-value=0.14 Score=43.84 Aligned_cols=75 Identities=15% Similarity=0.188 Sum_probs=56.9 Q ss_pred EEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--------CCCCCccEEEEe Q 024096 38 VLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL--------PKANKYDRIISC 108 (272) Q Consensus 38 vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--------~~~~~fD~V~~~ 108 (272) -+|||.|.-.+--.+..+ .+...+++|++...+..|..+..++++...+.+++.+...- .++..||..+|+ T Consensus 106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcN 185 (419) T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCN 185 (419) T ss_pred eeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecC Confidence 479988876655545444 67789999999999999999999999988888887754221 134569999998 Q ss_pred chhh Q 024096 109 GMIE 112 (272) Q Consensus 109 ~~~~ 112 (272) ..+. T Consensus 186 PPFf 189 (419) T KOG2912|consen 186 PPFF 189 (419) T ss_pred Cchh Confidence 7653 No 338 >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, Probab=94.10 E-value=0.16 Score=44.37 Aligned_cols=99 Identities=28% Similarity=0.407 Sum_probs=64.0 Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCCc Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANKY 102 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~f 102 (272) ....+.++.+||-.|+|. |..+..+++..+.+++++..+++..+.+++. +...-+.....++ ........+ T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337) T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GADDTINVGDEDVAARLRELTDGEGA 228 (337) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CCCEEecCcccCHHHHHHHHhCCCCC Confidence 455677899999998874 7777888888889999998888877776443 3211111111111 111133568 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) |+|+... +. ...+..+.+.|+++|+++. T Consensus 229 d~vld~~-----g~---~~~~~~~~~~l~~~G~~i~ 256 (337) T cd08261 229 DVVIDAT-----GN---PASMEEAVELVAHGGRVVL 256 (337) T ss_pred CEEEECC-----CC---HHHHHHHHHHHhcCCEEEE Confidence 9998642 11 2456777888999999875 No 339 >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... Probab=93.75 E-value=0.28 Score=39.06 Aligned_cols=92 Identities=17% Similarity=0.342 Sum_probs=62.2 Q ss_pred CC-CEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCC--CCCeEEEEcccCCCC-----C-----C Q 024096 34 KG-QEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGL--QDHIRFYLCDYRQLP-----K-----A 99 (272) Q Consensus 34 ~~-~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~--~~~i~~~~~d~~~~~-----~-----~ 99 (272) ++ ..|+.+|||.=.....+... .+.+++-+|. |..++.-++.+...+. +.+.+++.+|+.+.. . . T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~ 155 (183) T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDP 155 (183) T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-T T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCC Confidence 44 49999999998888888876 3677888885 7777777777666531 123567999998632 1 3 Q ss_pred CCccEEEEechhhccChhhHHHHHHHH Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCC 126 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~ 126 (272) +..-++++.+++.+++.+....+++.+ T Consensus 156 ~~ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183) T PF04072_consen 156 DRPTLFIAEGVLMYLSPEQVDALLRAI 182 (183) T ss_dssp TSEEEEEEESSGGGS-HHHHHHHHHHH T ss_pred CCCeEEEEcchhhcCCHHHHHHHHHHh Confidence 456688888999999888777777765 No 340 >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD Probab=93.61 E-value=0.87 Score=38.34 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=62.1 Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272) ....+.++.+||-.|+|. |..+..+++..+.+ +++++.+++..+.+++. |..+.+..... .......+|+| T Consensus 91 ~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~---~~~~~~~~d~v 163 (277) T cd08255 91 RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPVAADTA---DEIGGRGADVV 163 (277) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccccccch---hhhcCCCCCEE Confidence 355677899999999875 66777777776777 99999988887766543 31111111110 11123468988 Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +..-. . ...+....+.|+++|+++.. T Consensus 164 l~~~~-----~---~~~~~~~~~~l~~~g~~~~~ 189 (277) T cd08255 164 IEASG-----S---PSALETALRLLRDRGRVVLV 189 (277) T ss_pred EEccC-----C---hHHHHHHHHHhcCCcEEEEE Confidence 85311 0 23566677889999998863 No 341 >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. Probab=93.61 E-value=0.97 Score=40.12 Aligned_cols=102 Identities=16% Similarity=0.231 Sum_probs=63.0 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE--cccCC-CC--CC Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYL--CDYRQ-LP--KA 99 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~--~d~~~-~~--~~ 99 (272) .+...+.++.+||=.|+| .|..+..+++..++ +|+++|.+++..+.+++. |...-+.... .++.+ +. .. T Consensus 178 ~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~----Ga~~~i~~~~~~~~~~~~v~~~~~ 253 (368) T TIGR02818 178 LNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL----GATDCVNPNDYDKPIQEVIVEITD 253 (368) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCeEEcccccchhHHHHHHHHhC Confidence 345667889999999987 45666777877777 799999999888877553 4311111110 01100 10 11 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEEe Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQF 140 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 140 (272) +.+|+|+-. .+. ...+....+.++++ |++++.. T Consensus 254 ~g~d~vid~-----~G~---~~~~~~~~~~~~~~~G~~v~~g 287 (368) T TIGR02818 254 GGVDYSFEC-----IGN---VNVMRAALECCHKGWGESIIIG 287 (368) T ss_pred CCCCEEEEC-----CCC---HHHHHHHHHHhhcCCCeEEEEe Confidence 368888753 221 24566677788886 9887643 No 342 >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in Probab=93.56 E-value=0.8 Score=39.98 Aligned_cols=100 Identities=23% Similarity=0.317 Sum_probs=64.6 Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-ccCC-CC--CCCC Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DYRQ-LP--KANK 101 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~~~-~~--~~~~ 101 (272) +...+.+|.+||=.|+ |.|..+..+++..|+++++++.+++..+.+++.+ |...-+..... +..+ +. .... T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~g 221 (338) T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNG 221 (338) T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCC Confidence 4456789999999986 5777888888888889999998888777776522 43111111111 1111 01 1246 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +|+|+-. .+ ...+....+.|+++|+++.. T Consensus 222 vd~v~d~-----~g----~~~~~~~~~~l~~~G~iv~~ 250 (338) T cd08295 222 IDIYFDN-----VG----GKMLDAVLLNMNLHGRIAAC 250 (338) T ss_pred cEEEEEC-----CC----HHHHHHHHHHhccCcEEEEe Confidence 8888753 32 23566778889999999863 No 343 >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an Probab=93.35 E-value=1.1 Score=38.90 Aligned_cols=97 Identities=22% Similarity=0.178 Sum_probs=62.5 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccE Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDR 104 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~ 104 (272) ....+.++.+||-.|+| .|..+..+++..+.++++++.++...+.+++. |.. .++...-.... ..+.+|+ T Consensus 156 ~~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~d~ 228 (330) T cd08245 156 RDAGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKL----GAD---EVVDSGAELDEQAAAGGADV 228 (330) T ss_pred HhhCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----CCc---EEeccCCcchHHhccCCCCE Confidence 34567888999999987 77777777777788999999998877776432 321 11111111110 1246898 Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ++... +. ...+..+.+.|+++|.++.. T Consensus 229 vi~~~-----~~---~~~~~~~~~~l~~~G~~i~~ 255 (330) T cd08245 229 ILVTV-----VS---GAAAEAALGGLRRGGRIVLV 255 (330) T ss_pred EEECC-----Cc---HHHHHHHHHhcccCCEEEEE Confidence 87531 11 23566678889999998864 No 344 >PLN02827 Alcohol dehydrogenase-like Probab=93.32 E-value=0.6 Score=41.69 Aligned_cols=97 Identities=25% Similarity=0.304 Sum_probs=60.3 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-----ccCC-CC-- Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-----DYRQ-LP-- 97 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-----d~~~-~~-- 97 (272) +...+.++.+||-.|+| .|..+..+++..+. .++++|.++...+.+++. |.. .++.. +..+ +. T Consensus 187 ~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l----Ga~---~~i~~~~~~~~~~~~v~~~ 259 (378) T PLN02827 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF----GVT---DFINPNDLSEPIQQVIKRM 259 (378) T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CCc---EEEcccccchHHHHHHHHH Confidence 34567889999999886 45566667776676 588999888877777543 431 12211 1111 00 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272) ....+|+|+-. .+. ...+....+.+++| |++++. T Consensus 260 ~~~g~d~vid~-----~G~---~~~~~~~l~~l~~g~G~iv~~ 294 (378) T PLN02827 260 TGGGADYSFEC-----VGD---TGIATTALQSCSDGWGLTVTL 294 (378) T ss_pred hCCCCCEEEEC-----CCC---hHHHHHHHHhhccCCCEEEEE Confidence 11368888753 321 23566677788998 999863 No 345 >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] Probab=93.31 E-value=0.44 Score=39.94 Aligned_cols=88 Identities=11% Similarity=0.123 Sum_probs=62.6 Q ss_pred CCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-CCCccEEEEec Q 024096 31 RVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-ANKYDRIISCG 109 (272) Q Consensus 31 ~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-~~~fD~V~~~~ 109 (272) .+.+|+...|+|.-.|+++-.|.++ +..|+++|..+ |.+.. -.. +.|+....|..+..+ ....|-.+|.. T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~-ma~sL----~dt---g~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358) T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGP-MAQSL----MDT---GQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358) T ss_pred hhcCCceeeecccCCCccchhhhhc-ceEEEEeccch-hhhhh----hcc---cceeeeeccCcccccCCCCCceEEeeh Confidence 4669999999999999999999997 88999999654 22221 112 468888888877765 57888888853 Q ss_pred hhhccChhhHHHHHHHHHhcCccC Q 024096 110 MIEHVGHDYMEEFFGCCESLLATH 133 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~Lkpg 133 (272) + +.+..+-..+..+|..| T Consensus 279 V------EkP~rv~~li~~Wl~nG 296 (358) T COG2933 279 V------EKPARVAALIAKWLVNG 296 (358) T ss_pred h------cCcHHHHHHHHHHHHcc Confidence 3 33345555555565554 No 346 >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase. Probab=93.18 E-value=0.54 Score=40.65 Aligned_cols=87 Identities=21% Similarity=0.145 Sum_probs=55.5 Q ss_pred CCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech Q 024096 33 SKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM 110 (272) Q Consensus 33 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~ 110 (272) .++.+||=+||| .|.++..+++..+++ +.++|.++..++.+... . ++ |..+. ....+|+|+-. T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~-~~~g~Dvvid~-- 207 (308) T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------VL--DPEKD-PRRDYRAIYDA-- 207 (308) T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------cc--Chhhc-cCCCCCEEEEC-- Confidence 357789999987 566777788776765 66788887666555421 1 11 11110 12468988753 Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) .+. ...++.+.+.|+++|++++.- T Consensus 208 ---~G~---~~~~~~~~~~l~~~G~iv~~G 231 (308) T TIGR01202 208 ---SGD---PSLIDTLVRRLAKGGEIVLAG 231 (308) T ss_pred ---CCC---HHHHHHHHHhhhcCcEEEEEe Confidence 322 245677888999999998743 No 347 >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B. Probab=93.17 E-value=0.35 Score=36.84 Aligned_cols=112 Identities=13% Similarity=-0.024 Sum_probs=60.0 Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC Q 024096 17 VGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272) Q Consensus 17 ~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272) .+|+.-++++.++....+| -|||+|=|.|..=.+|.+. ++.+|+.+|-.-..-.- -.|+.-.++.+|+.+ T Consensus 12 taQR~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~--------~~P~~~~~ilGdi~~ 82 (160) T PF12692_consen 12 TAQRDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPS--------STPPEEDLILGDIRE 82 (160) T ss_dssp HHHHHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GG--------G---GGGEEES-HHH T ss_pred HHHHHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCC--------CCCchHheeeccHHH Confidence 4788889999999887665 7999999999999999988 89999999953211100 012233566666654 Q ss_pred CC-----CCCCccEEEEechhhccChhhH---HHHHHHHHhcCccCcEEEE Q 024096 96 LP-----KANKYDRIISCGMIEHVGHDYM---EEFFGCCESLLATHGLLVL 138 (272) Q Consensus 96 ~~-----~~~~fD~V~~~~~~~~~~~~~~---~~~l~~~~~~LkpgG~l~i 138 (272) .. ...+.-++......++- +++. ..+-.-+..+|.|||.++- T Consensus 83 tl~~~~~~g~~a~laHaD~G~g~~-~~d~a~a~~lspli~~~la~gGi~vS 132 (160) T PF12692_consen 83 TLPALARFGAGAALAHADIGTGDK-EKDDATAAWLSPLIAPVLAPGGIMVS 132 (160) T ss_dssp HHHHHHHH-S-EEEEEE----S-H-HHHHHHHHHHHHHHGGGEEEEEEEEE T ss_pred HhHHHHhcCCceEEEEeecCCCCc-chhHHHHHhhhHHHHHHhcCCcEEEe Confidence 32 11233333332222221 1111 2233446789999999874 No 348 >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim Probab=93.14 E-value=1.1 Score=39.82 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=62.5 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-----cCC-CC- Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-----YRQ-LP- 97 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-----~~~-~~- 97 (272) .+...++++++||=.|+| .|..+..+++..++ +|++++.++...+.+++. |.. .++... +.+ +. T Consensus 179 ~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~l----Ga~---~~i~~~~~~~~~~~~v~~ 251 (368) T cd08300 179 LNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKF----GAT---DCVNPKDHDKPIQQVLVE 251 (368) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCC---EEEcccccchHHHHHHHH Confidence 455667889999999876 45566677777777 799999999887777542 431 222111 101 00 Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEEe Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQF 140 (272) Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 140 (272) ..+.+|+|+-. .+. ...+....+.|+++ |++++.. T Consensus 252 ~~~~g~d~vid~-----~g~---~~~~~~a~~~l~~~~G~~v~~g 288 (368) T cd08300 252 MTDGGVDYTFEC-----IGN---VKVMRAALEACHKGWGTSVIIG 288 (368) T ss_pred HhCCCCcEEEEC-----CCC---hHHHHHHHHhhccCCCeEEEEc Confidence 12368988753 221 24566677788887 9888643 No 349 >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional Probab=93.09 E-value=0.9 Score=41.22 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=57.3 Q ss_pred HHHHHHHcCCC-CCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC Q 024096 23 VSVLIEKARVS-KGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272) Q Consensus 23 ~~~l~~~l~~~-~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272) ++.+.+..... .|.+|+=+|+|.=+ .....++..+++|+.+|.++.....+.. .| ..+. ++.+. .. T Consensus 199 ~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v~--~l~ea--l~ 266 (425) T PRK05476 199 LDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRVM--TMEEA--AE 266 (425) T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEec--CHHHH--Hh Confidence 34444333433 78999999999544 3333344478899999999865443322 12 2221 22222 14 Q ss_pred CccEEEEechhhccChhhHHHHHH-HHHhcCccCcEEEEE Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFG-CCESLLATHGLLVLQ 139 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~ 139 (272) .+|+|+... +. ...+. .....+|+|++++.. T Consensus 267 ~aDVVI~aT-----G~---~~vI~~~~~~~mK~GailiNv 298 (425) T PRK05476 267 LGDIFVTAT-----GN---KDVITAEHMEAMKDGAILANI 298 (425) T ss_pred CCCEEEECC-----CC---HHHHHHHHHhcCCCCCEEEEc Confidence 689998742 11 23444 577889999988764 No 350 >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] Probab=93.07 E-value=0.32 Score=41.79 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=72.3 Q ss_pred CCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh Q 024096 34 KGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272) Q Consensus 34 ~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272) ++.+|.-+|.| .|..+..++.-.+++|+.+|+|...+........ .+++.+-.+...+. .-.+.|+|+..-.+ T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLI 241 (371) T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLI 241 (371) T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEe Confidence 34578888888 5667777776678999999999887777665542 36777777766665 34688999876544 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEE Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .-- +.+.-..+++...||||+.++= T Consensus 242 pga--kaPkLvt~e~vk~MkpGsVivD 266 (371) T COG0686 242 PGA--KAPKLVTREMVKQMKPGSVIVD 266 (371) T ss_pred cCC--CCceehhHHHHHhcCCCcEEEE Confidence 443 5567788888999999998873 No 351 >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. Probab=93.06 E-value=0.34 Score=43.26 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=42.3 Q ss_pred HHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH Q 024096 26 LIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78 (272) Q Consensus 26 l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~ 78 (272) -.+.|++.++++||-|.+|..+...++.+. ..+|++||+||.+....+-+.. T Consensus 27 D~~aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA 78 (380) T PF11899_consen 27 DMEALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA 78 (380) T ss_pred HHHHhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH Confidence 356788999999999988877777777664 5799999999999888766543 No 352 >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast Probab=92.99 E-value=0.34 Score=42.29 Aligned_cols=97 Identities=27% Similarity=0.337 Sum_probs=61.9 Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc------cCCCCCC Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD------YRQLPKA 99 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d------~~~~~~~ 99 (272) ....+.++.+||-.|+|. |..+..+++..+.+ +++++.++...+.+++ .+.. .++..+ +...... T Consensus 153 ~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~~~~~~~~ 225 (343) T cd08236 153 RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGAD---DTINPKEEDVEKVRELTEG 225 (343) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEecCccccHHHHHHHhCC Confidence 345567888999998765 66777778777776 9999988877666543 2321 222111 1112233 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+|+|+.. .+. ...+..+.+.|+++|+++.. T Consensus 226 ~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 257 (343) T cd08236 226 RGADLVIEA-----AGS---PATIEQALALARPGGKVVLV 257 (343) T ss_pred CCCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE Confidence 459999864 211 34567778889999998763 No 353 >cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid Probab=92.80 E-value=0.85 Score=39.82 Aligned_cols=97 Identities=23% Similarity=0.325 Sum_probs=61.5 Q ss_pred HHcCCCCC--CEEEEECC--CchHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----- Q 024096 28 EKARVSKG--QEVLDIGC--GWGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----- 97 (272) Q Consensus 28 ~~l~~~~~--~~vLDiG~--G~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----- 97 (272) +...+.++ .+||=.|+ |.|..+..+++..|+ +|++++.+++..+.+++.+ |.. .++..+-.++. T Consensus 146 ~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~i~~ 219 (345) T cd08293 146 EKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD---AAINYKTDNVAERLRE 219 (345) T ss_pred HhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc---EEEECCCCCHHHHHHH Confidence 33445555 89999985 577888888888787 8999999887777665532 432 22221111111 Q ss_pred -CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 -KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 -~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+..+|+|+-. .+. ..+....+.|+++|+++.. T Consensus 220 ~~~~gvd~vid~-----~g~----~~~~~~~~~l~~~G~iv~~ 253 (345) T cd08293 220 LCPEGVDVYFDN-----VGG----EISDTVISQMNENSHIILC 253 (345) T ss_pred HCCCCceEEEEC-----CCc----HHHHHHHHHhccCCEEEEE Confidence 12468988853 221 1246677889999999863 No 354 >cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Probab=92.73 E-value=2 Score=37.17 Aligned_cols=97 Identities=20% Similarity=0.240 Sum_probs=63.0 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-----CCCC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-----PKAN 100 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-----~~~~ 100 (272) +...+.++.+||-+|+| .|..+..+++..+.+ +++++.+++..+.+++. +.. .++..+-... .... T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~ 225 (334) T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKL----GAT---ETVDPSREDPEAQKEDNPY 225 (334) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCe---EEecCCCCCHHHHHHhcCC Confidence 45567788999999876 366667777776776 89999998877776442 321 2222221111 1235 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+|+|+.. .+. ...+..+.+.|+++|+++.. T Consensus 226 ~vd~v~~~-----~~~---~~~~~~~~~~l~~~G~~v~~ 256 (334) T cd08234 226 GFDVVIEA-----TGV---PKTLEQAIEYARRGGTVLVF 256 (334) T ss_pred CCcEEEEC-----CCC---hHHHHHHHHHHhcCCEEEEE Confidence 68999863 211 34666778889999998764 No 355 >PRK11524 putative methyltransferase; Provisional Probab=92.70 E-value=0.12 Score=44.38 Aligned_cols=55 Identities=15% Similarity=0.188 Sum_probs=39.4 Q ss_pred CeEEEEcccCCCC---CCCCccEEEEechhhc------c----Ch----hhHHHHHHHHHhcCccCcEEEEE Q 024096 85 HIRFYLCDYRQLP---KANKYDRIISCGMIEH------V----GH----DYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 85 ~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~------~----~~----~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +..++++|..+.. ++++||+|++.....- . .. +-....+.++.++|||||.+++. T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284) T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284) T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE Confidence 4578889987743 5679999999765421 0 00 11246889999999999999984 No 356 >cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=92.69 E-value=0.95 Score=39.58 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=63.1 Q ss_pred HHcCCCCCCEEEEECCCc-hHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----------CC Q 024096 28 EKARVSKGQEVLDIGCGW-GTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----------RQ 95 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----------~~ 95 (272) ....+.++.+||-.|+|. |..+..+++..+.+ ++.++.+++..+.+++. +.. .++..+- .+ T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~~ 228 (343) T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GAT---HTVNVRTEDTPESAEKIAE 228 (343) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CCc---EEeccccccchhHHHHHHH Confidence 556678899999988764 66777788777776 89998888877766542 321 2221111 11 Q ss_pred CCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 96 LPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 96 ~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ......+|+|+.... . ...+....+.|+++|+++.. T Consensus 229 ~~~~~~~d~vld~~g-----~---~~~~~~~~~~l~~~G~~v~~ 264 (343) T cd05285 229 LLGGKGPDVVIECTG-----A---ESCIQTAIYATRPGGTVVLV 264 (343) T ss_pred HhCCCCCCEEEECCC-----C---HHHHHHHHHHhhcCCEEEEE Confidence 123356999986421 1 23567778889999998753 No 357 >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta Probab=92.67 E-value=2.4 Score=36.47 Aligned_cols=96 Identities=20% Similarity=0.336 Sum_probs=62.4 Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccE Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDR 104 (272) Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~ 104 (272) +++...+.++.+||=.|+| .|..+..+++..|.++++++.+++..+.+++ .|.. .+ . +.........+|+ T Consensus 147 ~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~-~~--~--~~~~~~~~~~~d~ 217 (319) T cd08242 147 ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE-TV--L--PDEAESEGGGFDV 217 (319) T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc-EE--e--CccccccCCCCCE Confidence 3455667888999999865 3445555666678899999999988877765 2432 11 1 1111123356999 Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) |+-. .+. ...+....+.|+++|+++. T Consensus 218 vid~-----~g~---~~~~~~~~~~l~~~g~~v~ 243 (319) T cd08242 218 VVEA-----TGS---PSGLELALRLVRPRGTVVL 243 (319) T ss_pred EEEC-----CCC---hHHHHHHHHHhhcCCEEEE Confidence 9864 221 2356667778899999986 No 358 >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. Probab=92.35 E-value=1.5 Score=39.70 Aligned_cols=98 Identities=9% Similarity=0.079 Sum_probs=62.6 Q ss_pred HHHHHHHcCC-CCCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC Q 024096 23 VSVLIEKARV-SKGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272) Q Consensus 23 ~~~l~~~l~~-~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272) ++.+.+..++ .+|++|+=+|+|+=+ ....+++..|++|+.+|.++...+.|+.. |. ... +..+. -. T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~----G~----~~~--~~~e~--v~ 256 (413) T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME----GY----EVM--TMEEA--VK 256 (413) T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc----CC----EEc--cHHHH--Hc Confidence 4666666554 578999999999644 44444555788999999998877766542 32 222 11111 13 Q ss_pred CccEEEEechhhccChhhHHHHHHH-HHhcCccCcEEEEEe Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGC-CESLLATHGLLVLQF 140 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~i~~ 140 (272) .+|+|+... +. ...+.. ..+.+|+||+++... T Consensus 257 ~aDVVI~at-----G~---~~~i~~~~l~~mk~GgilvnvG 289 (413) T cd00401 257 EGDIFVTTT-----GN---KDIITGEHFEQMKDGAIVCNIG 289 (413) T ss_pred CCCEEEECC-----CC---HHHHHHHHHhcCCCCcEEEEeC Confidence 579998642 21 234444 478899999997643 No 359 >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i Probab=92.32 E-value=1.4 Score=39.11 Aligned_cols=100 Identities=24% Similarity=0.330 Sum_probs=61.3 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc------cCCCCC Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD------YRQLPK 98 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d------~~~~~~ 98 (272) .+...+.++.+||=+|+| .|..+..+++..+. +|++++.++...+.+++. |...-+.....+ +.+... T Consensus 177 ~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~~~~~~~~~ 252 (365) T cd08277 177 WNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEF----GATDFINPKDSDKPVSEVIREMTG 252 (365) T ss_pred HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CCCcEeccccccchHHHHHHHHhC Confidence 345567889999999886 44566667777777 799999998887777542 331111111100 011112 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~ 139 (272) ..+|+|+-. .+. ...+....+.|+++ |++++. T Consensus 253 -~g~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~ 285 (365) T cd08277 253 -GGVDYSFEC-----TGN---ADLMNEALESTKLGWGVSVVV 285 (365) T ss_pred -CCCCEEEEC-----CCC---hHHHHHHHHhcccCCCEEEEE Confidence 468988853 221 24566677788885 998864 No 360 >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the Probab=92.24 E-value=1.5 Score=38.76 Aligned_cols=100 Identities=21% Similarity=0.277 Sum_probs=61.8 Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-----cCC-CC Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-----YRQ-LP 97 (272) Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-----~~~-~~ 97 (272) +.+...+.++.+||=.|+| .|..+..+++..++ +|++++.+++..+.+++. |.. .++..+ +.+ +. T Consensus 179 ~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~v~ 251 (369) T cd08301 179 AWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKF----GVT---EFVNPKDHDKPVQEVIA 251 (369) T ss_pred HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CCc---eEEcccccchhHHHHHH Confidence 3444567889999999876 45566677777777 899999999887777542 431 222111 100 00 Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccC-cEEEEEe Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATH-GLLVLQF 140 (272) Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~ 140 (272) ..+.+|+|+-. .+. ...+....+.++++ |++++.. T Consensus 252 ~~~~~~~d~vid~-----~G~---~~~~~~~~~~~~~~~g~~v~~g 289 (369) T cd08301 252 EMTGGGVDYSFEC-----TGN---IDAMISAFECVHDGWGVTVLLG 289 (369) T ss_pred HHhCCCCCEEEEC-----CCC---hHHHHHHHHHhhcCCCEEEEEC Confidence 12368887743 221 24556667778896 9988643 No 361 >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=92.12 E-value=0.95 Score=39.72 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=62.8 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CC Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LP 97 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~ 97 (272) +....+.++.+||-.|+| .|..+..+++..+. .+++++.+++..+.+++ .|.. .++..+-.+ +. T Consensus 159 ~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~ 231 (351) T cd08285 159 AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLT 231 (351) T ss_pred HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHh Confidence 345567789999999877 55666777777676 68999998877766664 2431 222111111 11 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ....+|+|+.. .+. ...+..+.+.|+++|+++.. T Consensus 232 ~~~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 265 (351) T cd08285 232 GGKGVDAVIIA-----GGG---QDTFEQALKVLKPGGTISNV 265 (351) T ss_pred CCCCCcEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEe Confidence 23468988853 211 24677788889999998853 No 362 >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] Probab=92.11 E-value=2.6 Score=35.39 Aligned_cols=114 Identities=22% Similarity=0.299 Sum_probs=77.5 Q ss_pred CCCCHHHHHHHHHH------HHHHHcCCCCCCEEEEE--CCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCC Q 024096 11 EHEDLEVGQMRKVS------VLIEKARVSKGQEVLDI--GCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGL 82 (272) Q Consensus 11 ~~~~l~~aq~~~~~------~l~~~l~~~~~~~vLDi--G~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~ 82 (272) ++.++..+....+. .+.+....++|.+||-- ..|.|.+..++++..++++++.-.+.+-.+.++++ |. T Consensus 117 e~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken----G~ 192 (336) T KOG1197|consen 117 EAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN----GA 192 (336) T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc----CC Confidence 34566666655553 34566788999988865 45677888888888888999998888777777765 65 Q ss_pred CCCeEEEEcccCCC----CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE Q 024096 83 QDHIRFYLCDYRQL----PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 83 ~~~i~~~~~d~~~~----~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) ..-|.....|+.+. ......|+++-. ++ ...++.-...|||+|+++ T Consensus 193 ~h~I~y~~eD~v~~V~kiTngKGVd~vyDs-----vG----~dt~~~sl~~Lk~~G~mV 242 (336) T KOG1197|consen 193 EHPIDYSTEDYVDEVKKITNGKGVDAVYDS-----VG----KDTFAKSLAALKPMGKMV 242 (336) T ss_pred cceeeccchhHHHHHHhccCCCCceeeecc-----cc----chhhHHHHHHhccCceEE Confidence 44455666664332 134567877743 32 245566677899999987 No 363 >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] Probab=92.06 E-value=0.49 Score=38.58 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=54.8 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272) .+.+.+..+.-..+-|.+||.|.|++++.+.+..-.+...+|+++..+.-.+-..+.. +.+..++++|+.... T Consensus 39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~~ 111 (326) T KOG0821|consen 39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRFK 111 (326) T ss_pred HHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEeccccceeh Confidence 3556666665567899999999999999999874457889999888877766555433 347888888886653 No 364 >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Probab=91.94 E-value=0.86 Score=43.46 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=59.1 Q ss_pred CEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE Q 024096 36 QEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272) .+|+=+|+|. .+..+++. .+.+++.+|.+++.++.+++. ...++.+|..+.. .-++.|.+++ T Consensus 401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601) T PRK03659 401 PQVIIVGFGR--FGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601) T ss_pred CCEEEecCch--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEE Confidence 4677777663 33333332 477999999999998887652 4688999998865 3367888887 Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) . .++++....+-...+.+.|..+++.. T Consensus 471 ~-----~~d~~~n~~i~~~~r~~~p~~~IiaR 497 (601) T PRK03659 471 T-----CNEPEDTMKIVELCQQHFPHLHILAR 497 (601) T ss_pred E-----eCCHHHHHHHHHHHHHHCCCCeEEEE Confidence 4 23233333444445667888888764 No 365 >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. Probab=91.92 E-value=0.21 Score=37.10 Aligned_cols=79 Identities=19% Similarity=0.264 Sum_probs=45.8 Q ss_pred CeEEEEcccCCCC--CCCCccEEEEechhhccChhh-HHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhc Q 024096 85 HIRFYLCDYRQLP--KANKYDRIISCGMIEHVGHDY-MEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEY 161 (272) Q Consensus 85 ~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~~~~~~-~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 161 (272) .+.+..+|+.+.- ....+|+|+...--....++- -.++++++.++++|||.+.- + T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T--y-------------------- 89 (124) T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT--Y-------------------- 89 (124) T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE--S-------------------- T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE--e-------------------- Confidence 4567778875533 347899999875221111010 16899999999999998763 1 Q ss_pred ccCCCCCCCHHHHHHHhhcCCCcEEEEEEecC Q 024096 162 IFPGGCLPSLGRVTSAMTSSSGLCVEHLENIG 193 (272) Q Consensus 162 ~~p~~~~~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272) +....++..+.++||.|....-.+ T Consensus 90 --------s~a~~Vr~~L~~aGF~v~~~~g~g 113 (124) T PF05430_consen 90 --------SSAGAVRRALQQAGFEVEKVPGFG 113 (124) T ss_dssp ----------BHHHHHHHHHCTEEEEEEE-ST T ss_pred --------echHHHHHHHHHcCCEEEEcCCCC Confidence 111223344556999998877655 No 366 >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Probab=91.92 E-value=1.2 Score=38.99 Aligned_cols=100 Identities=23% Similarity=0.247 Sum_probs=61.7 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC----CCCCCCC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR----QLPKANK 101 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~----~~~~~~~ 101 (272) ....+.++.+||=.|+| .|..+..+++..+. ++++++.+++..+.+++. |...-+.....++. +...... T Consensus 166 ~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~----ga~~~i~~~~~~~~~~l~~~~~~~~ 241 (351) T cd08233 166 RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL----GATIVLDPTEVDVVAEVRKLTGGGG 241 (351) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEECCCccCHHHHHHHHhCCCC Confidence 55567788999999865 45566667777777 899999888877777542 33111111111111 1112245 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +|+|+-.. +. ...++.+.+.|+++|+++.. T Consensus 242 ~d~vid~~-----g~---~~~~~~~~~~l~~~G~~v~~ 271 (351) T cd08233 242 VDVSFDCA-----GV---QATLDTAIDALRPRGTAVNV 271 (351) T ss_pred CCEEEECC-----CC---HHHHHHHHHhccCCCEEEEE Confidence 89998632 11 23567778889999998763 No 367 >cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall Probab=91.80 E-value=0.51 Score=41.19 Aligned_cols=99 Identities=24% Similarity=0.274 Sum_probs=60.1 Q ss_pred HcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCCc Q 024096 29 KARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANKY 102 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~f 102 (272) .....++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++. |...-+.....++ ........+ T Consensus 162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~i~~~~~~~~~ 237 (347) T cd05278 162 LAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GATDIINPKNGDIVEQILELTGGRGV 237 (347) T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CCcEEEcCCcchHHHHHHHHcCCCCC Confidence 3456788899998876 46777778877674 888888877666665543 3110011111111 111123569 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) |+|+... +. ...+....+.|+++|+++.. T Consensus 238 d~vld~~-----g~---~~~~~~~~~~l~~~G~~v~~ 266 (347) T cd05278 238 DCVIEAV-----GF---EETFEQAVKVVRPGGTIANV 266 (347) T ss_pred cEEEEcc-----CC---HHHHHHHHHHhhcCCEEEEE Confidence 9888531 11 24677778889999998753 No 368 >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing Probab=91.77 E-value=0.83 Score=38.56 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=48.4 Q ss_pred HHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc------CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC Q 024096 22 KVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT------GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ 95 (272) Q Consensus 22 ~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~------~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~ 95 (272) .+..|.+.--+.+...++|+|||.|.++.++++.. ...++.||-..... .+...++.......++=+..|+.+ T Consensus 6 li~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~d 84 (259) T PF05206_consen 6 LIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKD 84 (259) T ss_pred HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeec Confidence 34445554445778899999999999999998863 35789999754322 333344433311245556667666 Q ss_pred CC Q 024096 96 LP 97 (272) Q Consensus 96 ~~ 97 (272) +. T Consensus 85 l~ 86 (259) T PF05206_consen 85 LD 86 (259) T ss_pred cc Confidence 55 No 369 >TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). Probab=91.67 E-value=3.2 Score=38.66 Aligned_cols=105 Identities=14% Similarity=0.240 Sum_probs=69.1 Q ss_pred CCCEEEEECCCchHHHHHHHHc--c---CCEEEEEcCCHHHHHHHHHHHHHcCCC-CCeEEEEcccCCCC---CCCCccE Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ--T---GCKYTGITLSEEQLKYAEIKVREAGLQ-DHIRFYLCDYRQLP---KANKYDR 104 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~--~---~~~v~gvd~s~~~~~~a~~~~~~~g~~-~~i~~~~~d~~~~~---~~~~fD~ 104 (272) ++..|.|..||+|++.....+. . ...++|.+..+.+...++.++...+.. +......+|....+ ...+||. T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501) T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501) T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE Confidence 5679999999999988754432 1 246899999999999999887655542 23344445543322 2356888 Q ss_pred EEEechhhc--------------------c-Ch--hhHHHHHHHHHhcCccCcEEEE Q 024096 105 IISCGMIEH--------------------V-GH--DYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 105 V~~~~~~~~--------------------~-~~--~~~~~~l~~~~~~LkpgG~l~i 138 (272) |+++..+.- + ++ +.=..++..+...|++||+..+ T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai 353 (501) T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI 353 (501) T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE Confidence 887763311 1 10 1113577778899999998655 No 370 >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... Probab=91.64 E-value=0.48 Score=41.04 Aligned_cols=68 Identities=10% Similarity=0.109 Sum_probs=50.7 Q ss_pred EEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEechhh Q 024096 37 EVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISCGMIE 112 (272) Q Consensus 37 ~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~~~~~ 112 (272) +++|+-||.|+++.-+.+.....+.++|+++...+.-+.+.. ....+|+.++. +. .+|+++...... T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ 72 (335) T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGGPPCQ 72 (335) T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE---T T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEeccCCc Confidence 799999999999998888632467899999998888777752 88899998887 22 599999886544 Q ss_pred c Q 024096 113 H 113 (272) Q Consensus 113 ~ 113 (272) - T Consensus 73 ~ 73 (335) T PF00145_consen 73 G 73 (335) T ss_dssp T T ss_pred e Confidence 3 No 371 >PLN02494 adenosylhomocysteinase Probab=91.63 E-value=1.1 Score=40.96 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=59.3 Q ss_pred HHHHHHHcCC-CCCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCC Q 024096 23 VSVLIEKARV-SKGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKAN 100 (272) Q Consensus 23 ~~~l~~~l~~-~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~ 100 (272) ++.+.+..++ -.|.+|+=+|+|+=+ .....++..|++|+++|.++.....+... |. .+. +..+. -. T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~----G~----~vv--~leEa--l~ 308 (477) T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME----GY----QVL--TLEDV--VS 308 (477) T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc----CC----eec--cHHHH--Hh Confidence 4555555453 468999999999544 33333334789999999988654444321 22 222 22221 13 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..|+|+....-.+ -+..+....||+|+.++.. T Consensus 309 ~ADVVI~tTGt~~-------vI~~e~L~~MK~GAiLiNv 340 (477) T PLN02494 309 EADIFVTTTGNKD-------IIMVDHMRKMKNNAIVCNI 340 (477) T ss_pred hCCEEEECCCCcc-------chHHHHHhcCCCCCEEEEc Confidence 5799987432222 2346677889999999864 No 372 >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino Probab=91.53 E-value=1.6 Score=38.39 Aligned_cols=100 Identities=26% Similarity=0.282 Sum_probs=59.3 Q ss_pred HHcCC-CCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-------CCCC Q 024096 28 EKARV-SKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-------RQLP 97 (272) Q Consensus 28 ~~l~~-~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-------~~~~ 97 (272) ..+.. .++.+||=.|+| .|..+..+++..+. ++++++.+++..+.+++ .|...-+.....+. .+.. T Consensus 170 ~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~i~~~~ 245 (361) T cd08231 170 DRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGADATIDIDELPDPQRRAIVRDIT 245 (361) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCCeEEcCcccccHHHHHHHHHHh Confidence 44443 478899998875 44455666777778 99999988876665543 34321111111111 1111 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ....+|+|+-. .+. ...+....+.|+++|+++.. T Consensus 246 ~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361) T cd08231 246 GGRGADVVIEA-----SGH---PAAVPEGLELLRRGGTYVLV 279 (361) T ss_pred CCCCCcEEEEC-----CCC---hHHHHHHHHHhccCCEEEEE Confidence 23568988853 111 23566677889999999863 No 373 >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] Probab=91.51 E-value=1.9 Score=37.35 Aligned_cols=102 Identities=22% Similarity=0.231 Sum_probs=62.5 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE-EcccCC-CC--CCCC Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFY-LCDYRQ-LP--KANK 101 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~-~~d~~~-~~--~~~~ 101 (272) +...++.||.+|--+|.| .|+++..+|+..+.+|+++|-+..-.+.+-+.+ |-+.-+.+. ..|..+ +. -+.- T Consensus 174 Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L---GAd~fv~~~~d~d~~~~~~~~~dg~ 250 (360) T KOG0023|consen 174 LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL---GADVFVDSTEDPDIMKAIMKTTDGG 250 (360) T ss_pred hHHcCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc---CcceeEEecCCHHHHHHHHHhhcCc Confidence 344567799888888754 899999999999999999999876555554443 422111111 111111 11 2334 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) .|.|.+. . ...+..+.+.||++|.+++.-. T Consensus 251 ~~~v~~~--a--------~~~~~~~~~~lk~~Gt~V~vg~ 280 (360) T KOG0023|consen 251 IDTVSNL--A--------EHALEPLLGLLKVNGTLVLVGL 280 (360) T ss_pred ceeeeec--c--------ccchHHHHHHhhcCCEEEEEeC Confidence 4555532 1 2344556678899999998543 No 374 >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] Probab=91.25 E-value=1.4 Score=37.73 Aligned_cols=89 Identities=24% Similarity=0.124 Sum_probs=55.5 Q ss_pred CEEEEECCC--chHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh Q 024096 36 QEVLDIGCG--WGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272) Q Consensus 36 ~~vLDiG~G--~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272) .+|+=+|.| -|.++..+.+. ....++|.|.+....+.+.+. |+ .....+..........|+|+..-.+. T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l----gv----~d~~~~~~~~~~~~~aD~VivavPi~ 75 (279) T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL----GV----IDELTVAGLAEAAAEADLVIVAVPIE 75 (279) T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc----Cc----ccccccchhhhhcccCCEEEEeccHH Confidence 578888888 34455666665 445679999988777776643 22 22211111011235679999865444 Q ss_pred ccChhhHHHHHHHHHhcCccCcEEE Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) ....+++++...|++|..+. T Consensus 76 -----~~~~~l~~l~~~l~~g~iv~ 95 (279) T COG0287 76 -----ATEEVLKELAPHLKKGAIVT 95 (279) T ss_pred -----HHHHHHHHhcccCCCCCEEE Confidence 44788888888888886543 No 375 >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. Probab=91.24 E-value=2.8 Score=37.65 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=63.6 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---cc----CCCCC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---DY----RQLPK 98 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d~----~~~~~ 98 (272) ....+.++++||=.|+| .|..+..+++..+++ ++.+|.++...+.+++. |.. .+... +. .+... T Consensus 179 ~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~----Ga~---~v~~~~~~~~~~~v~~~~~ 251 (393) T TIGR02819 179 VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF----GCE---TVDLSKDATLPEQIEQILG 251 (393) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc----CCe---EEecCCcccHHHHHHHHcC Confidence 34567788999888886 455666777766665 56678888777777653 431 12111 11 11112 Q ss_pred CCCccEEEEechhhcc------ChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 99 ANKYDRIISCGMIEHV------GHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~------~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) ...+|+|+-.-..... ...+....++...+.+++||++++.-. T Consensus 252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393) T TIGR02819 252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393) T ss_pred CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee Confidence 2468988753321100 001112478888899999999998544 No 376 >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha Probab=91.09 E-value=6.4 Score=33.96 Aligned_cols=95 Identities=22% Similarity=0.181 Sum_probs=60.2 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEE Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRII 106 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~ 106 (272) +...+.++.+||=.|+| .|..+..+++..+.+++.++.++...+.+++ .|.. .+... ... ....+|+++ T Consensus 161 ~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~--~~~-~~~~vD~vi 230 (329) T cd08298 161 KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGAD---WAGDS--DDL-PPEPLDAAI 230 (329) T ss_pred HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCCc---EEecc--Ccc-CCCcccEEE Confidence 55567788889888876 3344555666678899999988876666643 2321 11111 111 234688877 Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) .... . ...++.+.+.|+++|+++... T Consensus 231 ~~~~---~-----~~~~~~~~~~l~~~G~~v~~g 256 (329) T cd08298 231 IFAP---V-----GALVPAALRAVKKGGRVVLAG 256 (329) T ss_pred EcCC---c-----HHHHHHHHHHhhcCCEEEEEc Confidence 5311 1 246777889999999998643 No 377 >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Probab=91.02 E-value=2.3 Score=40.70 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=60.4 Q ss_pred CCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe Q 024096 35 GQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272) Q Consensus 35 ~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272) ..+|+=+|||. |.......++.+.+++.+|.+++.++.+++. ...++.+|..+.. .-++.|.+++. T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621) T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621) T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE Confidence 35788888884 3322222222477899999999998888652 4678999998875 23578888874 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .++++....+-...+.+.|+-.++.. T Consensus 472 -----~~d~~~n~~i~~~ar~~~p~~~iiaR 497 (621) T PRK03562 472 -----IDDPQTSLQLVELVKEHFPHLQIIAR 497 (621) T ss_pred -----eCCHHHHHHHHHHHHHhCCCCeEEEE Confidence 23333344444455556788777653 No 378 >TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). Probab=90.87 E-value=2.3 Score=38.38 Aligned_cols=96 Identities=13% Similarity=0.144 Sum_probs=57.6 Q ss_pred HHHHHHcC-CCCCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272) Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272) +.+.+..+ ...|.+|+=+|+|.=+ .....++..+++|+++|.++.....+.. .| ..+. +..+. -.. T Consensus 183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v~--~leea--l~~ 250 (406) T TIGR00936 183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRVM--TMEEA--AKI 250 (406) T ss_pred HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEeC--CHHHH--Hhc Confidence 44444433 3578999999999644 4444444478999999998865433332 22 2222 22221 135 Q ss_pred ccEEEEechhhccChhhHHHHHH-HHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFG-CCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~i~ 139 (272) .|+|+.... . ..++. +....+|+|++++.. T Consensus 251 aDVVItaTG-----~---~~vI~~~~~~~mK~GailiN~ 281 (406) T TIGR00936 251 GDIFITATG-----N---KDVIRGEHFENMKDGAIVANI 281 (406) T ss_pred CCEEEECCC-----C---HHHHHHHHHhcCCCCcEEEEE Confidence 699876421 1 34443 477889999988864 No 379 >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A. Probab=90.87 E-value=0.81 Score=35.16 Aligned_cols=54 Identities=11% Similarity=0.197 Sum_probs=32.3 Q ss_pred EECCCch--HHHHHHH--Hc-cCCEEEEEcCCHHHHHHHHHH--HHHcCCCCCeEEEEccc Q 024096 40 DIGCGWG--TLAIEIV--KQ-TGCKYTGITLSEEQLKYAEIK--VREAGLQDHIRFYLCDY 93 (272) Q Consensus 40 DiG~G~G--~~~~~l~--~~-~~~~v~gvd~s~~~~~~a~~~--~~~~g~~~~i~~~~~d~ 93 (272) |||++.| .....+. .. ++.+++++|++|...+..+.+ +..+.....+++..... T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167) T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167) T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec Confidence 8999999 6655553 23 678999999999999998888 55443323355555443 No 380 >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] Probab=90.82 E-value=2.5 Score=36.17 Aligned_cols=74 Identities=24% Similarity=0.391 Sum_probs=58.0 Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272) Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272) .|..||-=|.|.|. ++..+|++ ++++...|++++..+...+.+++.| +++.+.+|..+.. .- T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300) T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300) T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc Confidence 57899998888874 55666765 8899999999998888888887765 7899999997754 23 Q ss_pred CCccEEEEechh Q 024096 100 NKYDRIISCGMI 111 (272) Q Consensus 100 ~~fD~V~~~~~~ 111 (272) +..|+++.+..+ T Consensus 113 G~V~ILVNNAGI 124 (300) T KOG1201|consen 113 GDVDILVNNAGI 124 (300) T ss_pred CCceEEEecccc Confidence 578888877644 No 381 >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] Probab=90.78 E-value=0.79 Score=39.07 Aligned_cols=48 Identities=13% Similarity=0.308 Sum_probs=39.8 Q ss_pred cCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHH Q 024096 30 ARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVR 78 (272) Q Consensus 30 l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~ 78 (272) +.+..|.+|.-+|+|..+...++++. .++|++||+++..+...+-++. T Consensus 59 m~~g~ghrivtigSGGcn~L~ylsr~-Pa~id~VDlN~ahiAln~lkla 106 (414) T COG5379 59 MQLGIGHRIVTIGSGGCNMLAYLSRA-PARIDVVDLNPAHIALNRLKLA 106 (414) T ss_pred HhcCCCcEEEEecCCcchHHHHhhcC-CceeEEEeCCHHHHHHHHHHHH Confidence 44568899999999998888888876 6799999999999887766554 No 382 >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal Probab=90.73 E-value=1.7 Score=37.84 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=61.0 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----CCCCCc Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----PKANKY 102 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~f 102 (272) ..+.+.++.+||=.|+| .|..+..+++..+.+++.++.+++..+.+++. |.. .++...-.+. .....+ T Consensus 157 ~~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~----g~~---~~i~~~~~~~~~~~~~~~~~ 229 (333) T cd08296 157 RNSGAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKL----GAH---HYIDTSKEDVAEALQELGGA 229 (333) T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHc----CCc---EEecCCCccHHHHHHhcCCC Confidence 44577788999999975 45566666776788999999988777766442 321 2221111111 111357 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) |+|+.. .+. ...+....+.|+++|+++.. T Consensus 230 d~vi~~-----~g~---~~~~~~~~~~l~~~G~~v~~ 258 (333) T cd08296 230 KLILAT-----APN---AKAISALVGGLAPRGKLLIL 258 (333) T ss_pred CEEEEC-----CCc---hHHHHHHHHHcccCCEEEEE Confidence 888752 111 34666778889999998863 No 383 >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] Probab=90.63 E-value=0.39 Score=43.64 Aligned_cols=112 Identities=13% Similarity=0.131 Sum_probs=75.2 Q ss_pred CCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC--------CCCCCccE Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL--------PKANKYDR 104 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~--------~~~~~fD~ 104 (272) .+.++|-+|-|.|.+...+... +..++++++++|.+.+.+..+..-..- .+..+...|..+. +.+..||+ T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482) T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482) T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE Confidence 4567888888889999888777 778999999999999999987632211 1334444443221 13468999 Q ss_pred EEEech---hhcc---Chh-hHHHHHHHHHhcCccCcEEEEEeecCCCC Q 024096 105 IISCGM---IEHV---GHD-YMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272) Q Consensus 105 V~~~~~---~~~~---~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272) ++..-- .+.+ +.. --..++..+...|.|.|.+++.-.+.... T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~ 422 (482) T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSS 422 (482) T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcc Confidence 886410 1111 111 12467888899999999999876664443 No 384 >cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me Probab=90.49 E-value=0.88 Score=40.21 Aligned_cols=98 Identities=22% Similarity=0.262 Sum_probs=62.0 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-------CCC Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-------QLP 97 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-------~~~ 97 (272) .....+.++.+||-.|+| .|..+..+++..+.+ +++++.++...+.+++. |. .+++..+-. ... T Consensus 175 ~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~----g~---~~vv~~~~~~~~~~l~~~~ 247 (363) T cd08279 175 VNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRF----GA---THTVNASEDDAVEAVRDLT 247 (363) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHh----CC---eEEeCCCCccHHHHHHHHc Confidence 344566788899999876 566777777777775 99999888877666432 32 122221111 111 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ....+|+|+..- +. ...+..+.+.|+++|+++.. T Consensus 248 ~~~~vd~vld~~-----~~---~~~~~~~~~~l~~~G~~v~~ 281 (363) T cd08279 248 DGRGADYAFEAV-----GR---AATIRQALAMTRKGGTAVVV 281 (363) T ss_pred CCCCCCEEEEcC-----CC---hHHHHHHHHHhhcCCeEEEE Confidence 235689887532 11 24567778889999998764 No 385 >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] Probab=90.37 E-value=11 Score=32.58 Aligned_cols=165 Identities=16% Similarity=0.227 Sum_probs=92.7 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHcc---CCEEEEEcCCHHHHHHHHHHHHHcCC----------------- Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQT---GCKYTGITLSEEQLKYAEIKVREAGL----------------- 82 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~---~~~v~gvd~s~~~~~~a~~~~~~~g~----------------- 82 (272) +...+++ ......|+.+|||.=.+...|.... ...++=+|.++.....+... ....+ T Consensus 78 v~~Fl~~--~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik-~~~~~s~~l~~~~~eD~~~~s~ 154 (335) T KOG2918|consen 78 VRAFLEQ--TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIK-RKPELSSILLGLHDEDVVDLSG 154 (335) T ss_pred HHHHHHh--cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhc-ccCchhhhhhccccccccccCc Confidence 3444444 3455799999999999888887762 35677777766555444111 11000 Q ss_pred ----CCCeEEEEcccCCCC-----------CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCc Q 024096 83 ----QDHIRFYLCDYRQLP-----------KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQC 147 (272) Q Consensus 83 ----~~~i~~~~~d~~~~~-----------~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 147 (272) .++-..+-+|+.++. ..+-.-++++--++.++.++.-..+++.+.........+ +-+...+.++ T Consensus 155 ~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv-~YEQi~~~D~ 233 (335) T KOG2918|consen 155 TDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFV-NYEQINPNDR 233 (335) T ss_pred ceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEE-EEeccCCCCh Confidence 123445555555432 012234556666777887776677888887766555444 4444445554 Q ss_pred cccccCcchhhhhcccC--C-CCCCCHHHHHHHhhcCCCcEEEEEEecCc Q 024096 148 YDEYRLSPGFIKEYIFP--G-GCLPSLGRVTSAMTSSSGLCVEHLENIGI 194 (272) Q Consensus 148 ~~~~~~~~~~~~~~~~p--~-~~~~~~~~~~~~l~~~~Gf~v~~~~~~~~ 194 (272) +.... ...++..-.| + ..+++.+...+++. ++||.-+.+.|+-. T Consensus 234 Fg~vM--~~nlk~r~~~L~gle~y~s~Esq~~Rf~-~~Gw~~v~a~Dm~e 280 (335) T KOG2918|consen 234 FGKVM--LANLKRRGCPLHGLETYNSIESQRSRFL-KAGWEYVIAVDMNE 280 (335) T ss_pred HHHHH--HHHHHhcCCCCchhhhcccHHHHHHHHH-hcCCceeehhhHHH Confidence 43321 1111111111 1 23467777776666 49998887777643 No 386 >TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Probab=90.15 E-value=0.83 Score=39.79 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=49.3 Q ss_pred EEEECCCchHHHHHHHHccCCEE-EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechhhc Q 024096 38 VLDIGCGWGTLAIEIVKQTGCKY-TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMIEH 113 (272) Q Consensus 38 vLDiG~G~G~~~~~l~~~~~~~v-~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~ 113 (272) |+|+-||.|+++.-+.+. |.++ .++|+++..++.-+.+. ++ .+..+|+.++. .-..+|+++....... T Consensus 1 vidLF~G~GG~~~Gl~~a-G~~~~~a~e~~~~a~~ty~~N~-----~~--~~~~~Di~~~~~~~~~~~dvl~gg~PCq~ 71 (315) T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GFKCVFASEIDKYAQKTYEANF-----GN--KVPFGDITKISPSDIPDFDILLGGFPCQP 71 (315) T ss_pred CEEEecCccHHHHHHHHc-CCeEEEEEeCCHHHHHHHHHhC-----CC--CCCccChhhhhhhhCCCcCEEEecCCCcc Confidence 689999999999888775 5654 57999998888777664 22 44567887766 2246899988754433 No 387 >PRK10669 putative cation:proton antiport protein; Provisional Probab=90.10 E-value=1.7 Score=41.04 Aligned_cols=88 Identities=11% Similarity=0.069 Sum_probs=55.7 Q ss_pred CEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE Q 024096 36 QEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272) .+++=+|||. .+..+++. .+.+++.+|.+++.++.+++. ....+.+|..+.. .-+++|.+++ T Consensus 418 ~hiiI~G~G~--~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558) T PRK10669 418 NHALLVGYGR--VGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558) T ss_pred CCEEEECCCh--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEE Confidence 5677777764 33334433 467899999999988877642 4789999998754 2368887765 Q ss_pred echhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 108 CGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) . .++++....+-.+.+.+.|+-.++. T Consensus 488 ~-----~~~~~~~~~iv~~~~~~~~~~~iia 513 (558) T PRK10669 488 T-----IPNGYEAGEIVASAREKRPDIEIIA 513 (558) T ss_pred E-----cCChHHHHHHHHHHHHHCCCCeEEE Confidence 3 2222222233334455577777765 No 388 >PLN02586 probable cinnamyl alcohol dehydrogenase Probab=90.06 E-value=3 Score=36.89 Aligned_cols=94 Identities=27% Similarity=0.328 Sum_probs=55.9 Q ss_pred CCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-cccCCCC-CCCCccEEEEe Q 024096 32 VSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL-CDYRQLP-KANKYDRIISC 108 (272) Q Consensus 32 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~-~d~~~~~-~~~~fD~V~~~ 108 (272) ..++.+||-.|+| .|..+..+++..++++++++.++.....+ .+..|.. .++. .+...+. ..+.+|+|+-. T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~---~~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid~ 254 (360) T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEA---INRLGAD---SFLVSTDPEKMKAAIGTMDYIIDT 254 (360) T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhH---HHhCCCc---EEEcCCCHHHHHhhcCCCCEEEEC Confidence 4678899999987 56667777777788898888776543222 1223431 1221 1111111 11247888743 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+. ...+.+..+.|+++|+++.. T Consensus 255 -----~g~---~~~~~~~~~~l~~~G~iv~v 277 (360) T PLN02586 255 -----VSA---VHALGPLLGLLKVNGKLITL 277 (360) T ss_pred -----CCC---HHHHHHHHHHhcCCcEEEEe Confidence 221 23566778899999999864 No 389 >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( Probab=89.87 E-value=4.1 Score=35.53 Aligned_cols=99 Identities=23% Similarity=0.316 Sum_probs=59.6 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANK 101 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~ 101 (272) ....+.++.+||=.|+| .|..+..+++..+ .++++++.++...+.+++. |...-+.....+. .+...... T Consensus 160 ~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~i~~~~~~~~ 235 (345) T cd08286 160 LNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKL----GATHTVNSAKGDAIEQVLELTDGRG 235 (345) T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CCCceeccccccHHHHHHHHhCCCC Confidence 34456788888888775 3445566666667 7899999888776666542 4311112211121 11123356 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) +|+|+.. .+. ...+..+.+.|+++|+++. T Consensus 236 ~d~vld~-----~g~---~~~~~~~~~~l~~~g~~v~ 264 (345) T cd08286 236 VDVVIEA-----VGI---PATFELCQELVAPGGHIAN 264 (345) T ss_pred CCEEEEC-----CCC---HHHHHHHHHhccCCcEEEE Confidence 9988853 221 2356777789999999875 No 390 >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found Probab=89.85 E-value=3.9 Score=36.90 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=61.2 Q ss_pred HcCCCCCCEEEEEC-CC-chHHHHHHHHccC---CEEEEEcCCHHHHHHHHHHHHHc----CCCCCeEEEEc----ccC- Q 024096 29 KARVSKGQEVLDIG-CG-WGTLAIEIVKQTG---CKYTGITLSEEQLKYAEIKVREA----GLQDHIRFYLC----DYR- 94 (272) Q Consensus 29 ~l~~~~~~~vLDiG-~G-~G~~~~~l~~~~~---~~v~gvd~s~~~~~~a~~~~~~~----g~~~~i~~~~~----d~~- 94 (272) ...++++.+||=+| +| .|..+..+++..+ .+|+++|.++..++.+++..... |. ...++.. ++. T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~ 247 (410) T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHA 247 (410) T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHH Confidence 34567889999997 44 6777787887643 27999999999888887742110 11 1112211 111 Q ss_pred ---CCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 95 ---QLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 95 ---~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) ++.....+|+|+..- +. ...+....+.++++|.+++ T Consensus 248 ~v~~~t~g~g~D~vid~~-----g~---~~~~~~a~~~l~~~G~~v~ 286 (410) T cd08238 248 TLMELTGGQGFDDVFVFV-----PV---PELVEEADTLLAPDGCLNF 286 (410) T ss_pred HHHHHhCCCCCCEEEEcC-----CC---HHHHHHHHHHhccCCeEEE Confidence 111234689887531 11 3466677788898887765 No 391 >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. Probab=89.70 E-value=5.4 Score=35.66 Aligned_cols=112 Identities=16% Similarity=0.289 Sum_probs=67.8 Q ss_pred HHHHHHcCCCCCCEEEEECCCchH----HHHHHHHc----cCCEEEEEcC----CHHHHHHHHHHH----HHcCCCCCeE Q 024096 24 SVLIEKARVSKGQEVLDIGCGWGT----LAIEIVKQ----TGCKYTGITL----SEEQLKYAEIKV----REAGLQDHIR 87 (272) Q Consensus 24 ~~l~~~l~~~~~~~vLDiG~G~G~----~~~~l~~~----~~~~v~gvd~----s~~~~~~a~~~~----~~~g~~~~i~ 87 (272) ..|++.+.-...-+|+|+|.|.|. +...|+.+ +..++|+++. +...++.+.+++ +..|++ .+ T Consensus 100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fe 177 (374) T PF03514_consen 100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FE 177 (374) T ss_pred HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EE Confidence 355666666677899999999885 55666665 2358999999 666666665554 444664 44 Q ss_pred EEE---cccCCCC------CCCCccEEEEechhhccChh------hHHHHHHHHHhcCccCcEEEE Q 024096 88 FYL---CDYRQLP------KANKYDRIISCGMIEHVGHD------YMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 88 ~~~---~d~~~~~------~~~~fD~V~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i 138 (272) |.. .+.+++. .++..=+|-+...++|+.++ ....+++.+. .|+|.-.+++ T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P~vvv~~ 242 (374) T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNPKVVVLV 242 (374) T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCCCEEEEE Confidence 444 2344442 12222233445566887522 2345666555 6799955544 No 392 >COG4017 Uncharacterized protein conserved in archaea [Function unknown] Probab=89.67 E-value=1.5 Score=35.08 Aligned_cols=106 Identities=13% Similarity=0.129 Sum_probs=70.9 Q ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC Q 024096 16 EVGQMRKVSVLIEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR 94 (272) Q Consensus 16 ~~aq~~~~~~l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~ 94 (272) .+....+.+.+........+.+||-+|+- +|.....+.++ .++|+.+|+.|.+... +++++.|... . T Consensus 26 ~eI~~~K~~ai~~~~~~~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~--~ 93 (254) T COG4017 26 NEIAKKKYQAIRDFLEGEEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL--L 93 (254) T ss_pred HHHHHHHHHHhhhhhcccCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh--c Confidence 45555556666655666778899999987 77777777665 7899999999965443 3456776655 1 Q ss_pred CCCCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 95 QLPKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 95 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) .+..+.+|+|+-...+-.+. +.++++ +.|+ .+++.++.. T Consensus 94 -~~~~G~~DlivDlTGlGG~~----Pe~L~~----fnp~-vfiVEdP~g 132 (254) T COG4017 94 -KFIRGEVDLIVDLTGLGGIE----PEFLAK----FNPK-VFIVEDPKG 132 (254) T ss_pred -CCCCCceeEEEeccccCCCC----HHHHhc----cCCc-eEEEECCCC Confidence 12457899999887777773 334332 3554 566655543 No 393 >PRK10458 DNA cytosine methylase; Provisional Probab=89.50 E-value=1.9 Score=39.75 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=50.5 Q ss_pred CHHHHHHHHHHHHHHHcCC---CCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE Q 024096 14 DLEVGQMRKVSVLIEKARV---SKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL 90 (272) Q Consensus 14 ~l~~aq~~~~~~l~~~l~~---~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~ 90 (272) .+..+....+..++..-+. ....+++|+-||.|++..-+-+.....|.++|+++...+.-+.+... .+...... T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~---~p~~~~~~ 140 (467) T PRK10458 64 RLSEAEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC---DPATHRFN 140 (467) T ss_pred CccHHHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC---CCccceec Confidence 4555555555555433221 12469999999999999988776334567999998776666555311 11334556 Q ss_pred cccCCCC Q 024096 91 CDYRQLP 97 (272) Q Consensus 91 ~d~~~~~ 97 (272) +|+.++. T Consensus 141 ~DI~~i~ 147 (467) T PRK10458 141 EDIRDIT 147 (467) T ss_pred cChhhCc Confidence 6666653 No 394 >cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi Probab=89.44 E-value=6.4 Score=35.08 Aligned_cols=99 Identities=22% Similarity=0.211 Sum_probs=58.9 Q ss_pred cCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---c----cCCCCCCC Q 024096 30 ARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---D----YRQLPKAN 100 (272) Q Consensus 30 l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d----~~~~~~~~ 100 (272) ..+.++.+||=.|+| .|..+..+++..|. ++++++.++...+.+++ .|...-+..... + +.+..... T Consensus 199 ~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~~g~ 274 (384) T cd08265 199 GGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVTKGW 274 (384) T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhcCCC Confidence 367788999988876 34455666666677 79999988875555444 243211111110 1 11112335 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+|+|+.. .+.. ...+..+.+.|+++|+++.. T Consensus 275 gvDvvld~-----~g~~--~~~~~~~~~~l~~~G~~v~~ 306 (384) T cd08265 275 GADIQVEA-----AGAP--PATIPQMEKSIAINGKIVYI 306 (384) T ss_pred CCCEEEEC-----CCCc--HHHHHHHHHHHHcCCEEEEE Confidence 68988853 2111 34566777888999999863 No 395 >PLN02514 cinnamyl-alcohol dehydrogenase Probab=89.44 E-value=6.8 Score=34.56 Aligned_cols=95 Identities=25% Similarity=0.241 Sum_probs=56.2 Q ss_pred CCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEec Q 024096 32 VSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCG 109 (272) Q Consensus 32 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~ 109 (272) ..++.+||-.|+| .|..+..+++..+.++++++.+++....+.+ ..|.. . .+...+...+. ....+|+|+-. T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~---~~Ga~-~-~i~~~~~~~~~~~~~~~D~vid~- 251 (357) T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALE---HLGAD-D-YLVSSDAAEMQEAADSLDYIIDT- 251 (357) T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH---hcCCc-E-EecCCChHHHHHhcCCCcEEEEC- Confidence 3578899988876 5566677777778888888887765544432 23431 1 11111111111 11357877743 Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+. ...++.+.+.|+++|+++.. T Consensus 252 ----~g~---~~~~~~~~~~l~~~G~iv~~ 274 (357) T PLN02514 252 ----VPV---FHPLEPYLSLLKLDGKLILM 274 (357) T ss_pred ----CCc---hHHHHHHHHHhccCCEEEEE Confidence 221 24566677889999998874 No 396 >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] Probab=89.28 E-value=2.1 Score=38.87 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=69.7 Q ss_pred CCCCEEEEECCCchHHHHHHH--Hc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc-cc--CCCC--CCCCccE Q 024096 33 SKGQEVLDIGCGWGTLAIEIV--KQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC-DY--RQLP--KANKYDR 104 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~--~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~-d~--~~~~--~~~~fD~ 104 (272) ...+.++|+|+|.|.-...+. .. ..-.++.||.+..+.......++. |-..+-.++.. -+ ..+| ..+.||+ T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~~~~~~r~~~pi~~~~~yDl 277 (491) T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVRKLVFHRQRLPIDIKNGYDL 277 (491) T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhhcCchhccccchhcccCCCCcccceee Confidence 345788999988775443333 33 346799999999999998888765 11111111111 11 1123 4467999 Q ss_pred EEEechhhccChhhH-HHH-HHHHHhcCccCcEEEEEeecCC Q 024096 105 IISCGMIEHVGHDYM-EEF-FGCCESLLATHGLLVLQFISAP 144 (272) Q Consensus 105 V~~~~~~~~~~~~~~-~~~-l~~~~~~LkpgG~l~i~~~~~~ 144 (272) |++...+++++.... ... ...+....++|+.+++.....+ T Consensus 278 vi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~ 319 (491) T KOG2539|consen 278 VICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT 319 (491) T ss_pred EEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc Confidence 999999999875532 223 3345577788888888655443 No 397 >cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Probab=89.26 E-value=1.5 Score=38.30 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=57.6 Q ss_pred CCCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc---CCCCCCCCccEEE Q 024096 32 VSKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY---RQLPKANKYDRII 106 (272) Q Consensus 32 ~~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~---~~~~~~~~fD~V~ 106 (272) ..++.+||-.|+|. |..+..+++..+. ++++++-++...+.+++. |...-+.....++ .+....+.+|+|+ T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~vd~vl 236 (341) T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM----GADVVINPREEDVVEVKSVTDGTGVDVVL 236 (341) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CcceeeCcccccHHHHHHHcCCCCCCEEE Confidence 45788888888763 6677777777777 788887777666655542 3211111111111 1122335789998 Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..- +. ......+.+.|+++|+++.. T Consensus 237 d~~-----g~---~~~~~~~~~~l~~~G~~v~~ 261 (341) T cd05281 237 EMS-----GN---PKAIEQGLKALTPGGRVSIL 261 (341) T ss_pred ECC-----CC---HHHHHHHHHHhccCCEEEEE Confidence 632 11 24566677889999998753 No 398 >cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu Probab=89.13 E-value=1 Score=39.88 Aligned_cols=97 Identities=20% Similarity=0.274 Sum_probs=61.5 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C--CC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P--KA 99 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~--~~ 99 (272) +...+.++.+||-.|+| .|..+..+++..|. ++++++.++...+.+++. |. ..++..+-.+. . .. T Consensus 180 ~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~----g~---~~~i~~~~~~~~~~v~~~~~ 252 (365) T cd08278 180 NVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKEL----GA---THVINPKEEDLVAAIREITG 252 (365) T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHc----CC---cEEecCCCcCHHHHHHHHhC Confidence 34556788999999876 36677777777677 699999998777666542 32 12222111111 0 13 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+|+|+-. .+. ...+..+.+.|+++|+++.. T Consensus 253 ~~~d~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 284 (365) T cd08278 253 GGVDYALDT-----TGV---PAVIEQAVDALAPRGTLALV 284 (365) T ss_pred CCCcEEEEC-----CCC---cHHHHHHHHHhccCCEEEEe Confidence 468988853 221 24567778889999998863 No 399 >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] Probab=89.12 E-value=4.2 Score=36.78 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=74.5 Q ss_pred CCCEEEEEC---CC----chHHHHHHHHc-cCCEEEEEcCC-HHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------- Q 024096 34 KGQEVLDIG---CG----WGTLAIEIVKQ-TGCKYTGITLS-EEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------- 97 (272) Q Consensus 34 ~~~~vLDiG---~G----~G~~~~~l~~~-~~~~v~gvd~s-~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------- 97 (272) ++..||=+| +| .|=++.++.++ ...-+++.|+- |..++..+....+.+ +.|+..+-..-| T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~----v~~f~~~~~~~Pv~Iak~a 174 (451) T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVG----VPFFGSGTEKDPVEIAKAA 174 (451) T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcC----CceecCCCCCCHHHHHHHH Confidence 456677774 55 33355555554 23346777874 777788888777764 455555433333 Q ss_pred ----CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC Q 024096 98 ----KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272) Q Consensus 98 ----~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272) ..+.+|+|+...+-.|--++++-.-++++.+.++|.-.+++.|-....+ T Consensus 175 l~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd 227 (451) T COG0541 175 LEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD 227 (451) T ss_pred HHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH Confidence 2467999999877766666777788899999999999999987765543 No 400 >TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. Probab=88.93 E-value=1.2 Score=39.71 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=54.0 Q ss_pred CCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccEEEEechh Q 024096 34 KGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDRIISCGMI 111 (272) Q Consensus 34 ~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~V~~~~~~ 111 (272) ++.+|+=+|+| .|..+...+...|++|+.+|.++...+.+.... + ..+.....+..++. .-..+|+|+..-.+ T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370) T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370) T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc Confidence 45679999998 555556666657889999999887655543322 1 11221111111122 12468999975322 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEE Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .-. +.+.-+-++..+.++|++.++- T Consensus 241 ~g~--~~p~lit~~~l~~mk~g~vIvD 265 (370) T TIGR00518 241 PGA--KAPKLVSNSLVAQMKPGAVIVD 265 (370) T ss_pred CCC--CCCcCcCHHHHhcCCCCCEEEE Confidence 111 1111123445566899987664 No 401 >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] Probab=88.93 E-value=4.7 Score=35.33 Aligned_cols=106 Identities=21% Similarity=0.219 Sum_probs=67.7 Q ss_pred HHHHHcCCCCCCEEEEECCCc-hHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc----cCCCC- Q 024096 25 VLIEKARVSKGQEVLDIGCGW-GTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD----YRQLP- 97 (272) Q Consensus 25 ~l~~~l~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d----~~~~~- 97 (272) ..++..+.++|++|.-+|||. |..++.-+.. ...+++++|+++.-.++|++. | -.+++... +.+.- T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f----G---AT~~vn~~~~~~vv~~i~ 248 (366) T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF----G---ATHFVNPKEVDDVVEAIV 248 (366) T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc----C---CceeecchhhhhHHHHHH Confidence 456677889999999999984 5555555555 345899999999999999876 3 34454442 11111 Q ss_pred --CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCC Q 024096 98 --KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPD 145 (272) Q Consensus 98 --~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 145 (272) .+...|.++ +..+. ...++.....+.++|..++.-...+. T Consensus 249 ~~T~gG~d~~~-----e~~G~---~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366) T COG1062 249 ELTDGGADYAF-----ECVGN---VEVMRQALEATHRGGTSVIIGVAGAG 290 (366) T ss_pred HhcCCCCCEEE-----EccCC---HHHHHHHHHHHhcCCeEEEEecCCCC Confidence 223566653 22322 23666666667779998886554433 No 402 >PRK08306 dipicolinate synthase subunit A; Reviewed Probab=88.82 E-value=4.4 Score=34.97 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=54.5 Q ss_pred HHHHcCCC-CCCEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCc Q 024096 26 LIEKARVS-KGQEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-KANKY 102 (272) Q Consensus 26 l~~~l~~~-~~~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~f 102 (272) .++..... .+.+|+=+|.|.-+ .....++..+++|+.+|.++...+.++. .|. ++. +..++. .-..+ T Consensus 142 a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G~----~~~--~~~~l~~~l~~a 211 (296) T PRK08306 142 AIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MGL----SPF--HLSELAEEVGKI 211 (296) T ss_pred HHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCC----eee--cHHHHHHHhCCC Confidence 34444433 57899999998533 3333333468899999999876555432 232 222 122222 12568 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEE Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) |+|+..- |. .-+-++....++|++.++ T Consensus 212 DiVI~t~-----p~---~~i~~~~l~~~~~g~vII 238 (296) T PRK08306 212 DIIFNTI-----PA---LVLTKEVLSKMPPEALII 238 (296) T ss_pred CEEEECC-----Ch---hhhhHHHHHcCCCCcEEE Confidence 9999852 21 123345567788987665 No 403 >PRK13699 putative methylase; Provisional Probab=88.63 E-value=0.38 Score=39.80 Aligned_cols=52 Identities=19% Similarity=0.209 Sum_probs=35.8 Q ss_pred EEEEcccCCCC---CCCCccEEEEechhhc-----cC--------hhhHHHHHHHHHhcCccCcEEEE Q 024096 87 RFYLCDYRQLP---KANKYDRIISCGMIEH-----VG--------HDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 87 ~~~~~d~~~~~---~~~~fD~V~~~~~~~~-----~~--------~~~~~~~l~~~~~~LkpgG~l~i 138 (272) +++++|..+.- +++++|+|+......- .+ .+-....+++++|+|||||.+++ T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227) T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227) T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE Confidence 56778876542 6788999998854420 00 01235788999999999998875 No 404 >cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i Probab=88.59 E-value=1.4 Score=38.37 Aligned_cols=97 Identities=25% Similarity=0.294 Sum_probs=61.8 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-------CCCC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-------QLPK 98 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-------~~~~ 98 (272) ..+.+.++.+||=.|+| .|..+..+++..+.+ +++++.++...+.+.+ .+. ..++..+-. .... T Consensus 159 ~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~----~g~---~~~~~~~~~~~~~~i~~~~~ 231 (343) T cd08235 159 RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK----LGA---DYTIDAAEEDLVEKVRELTD 231 (343) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCC---cEEecCCccCHHHHHHHHhC Confidence 44567889999999876 666767777777777 8899888887776643 232 122221111 1123 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ...+|+|+.. .+. ...+..+.+.|+++|+++.. T Consensus 232 ~~~vd~vld~-----~~~---~~~~~~~~~~l~~~g~~v~~ 264 (343) T cd08235 232 GRGADVVIVA-----TGS---PEAQAQALELVRKGGRILFF 264 (343) T ss_pred CcCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEEE Confidence 3458998853 211 24566677888999998863 No 405 >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall Probab=88.55 E-value=3.4 Score=36.52 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=60.6 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc--cc----CCCCC Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC--DY----RQLPK 98 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~--d~----~~~~~ 98 (272) .+...+.++.+||=.|+| .|..+..+++..+. .+++++.++...+.+++. |...-+..... +. .+.. T Consensus 176 ~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~~~l~~~~- 250 (365) T cd05279 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQL----GATECINPRDQDKPIVEVLTEMT- 250 (365) T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCCeecccccccchHHHHHHHHh- Confidence 344567788999999876 44555666776666 488888888877777542 33111111111 11 1111 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCc-cCcEEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLA-THGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~i~ 139 (272) .+.+|+|+.. .+. ...+....+.|+ ++|+++.. T Consensus 251 ~~~~d~vid~-----~g~---~~~~~~~~~~l~~~~G~~v~~ 284 (365) T cd05279 251 DGGVDYAFEV-----IGS---ADTLKQALDATRLGGGTSVVV 284 (365) T ss_pred CCCCcEEEEC-----CCC---HHHHHHHHHHhccCCCEEEEE Confidence 2468988853 221 245667778888 99998864 No 406 >PRK07417 arogenate dehydrogenase; Reviewed Probab=88.28 E-value=3.5 Score=35.14 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=51.4 Q ss_pred EEEEECCCc--hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhcc Q 024096 37 EVLDIGCGW--GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHV 114 (272) Q Consensus 37 ~vLDiG~G~--G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~ 114 (272) +|.=||+|. |.++..+.+. +.+|+++|.++...+.+.+. |. +.....+.. .....|+|+..- T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~~---~~~~aDlVilav----- 65 (279) T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRESTCERAIER----GL---VDEASTDLS---LLKDCDLVILAL----- 65 (279) T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC----CC---cccccCCHh---HhcCCCEEEEcC----- Confidence 567788884 3455556554 77999999999877766543 21 111111111 124679998764 Q ss_pred ChhhHHHHHHHHHhcCccCcEE Q 024096 115 GHDYMEEFFGCCESLLATHGLL 136 (272) Q Consensus 115 ~~~~~~~~l~~~~~~LkpgG~l 136 (272) +......+++++...++++..+ T Consensus 66 p~~~~~~~~~~l~~~l~~~~ii 87 (279) T PRK07417 66 PIGLLLPPSEQLIPALPPEAIV 87 (279) T ss_pred CHHHHHHHHHHHHHhCCCCcEE Confidence 3334466788888888776433 No 407 >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional Probab=88.28 E-value=12 Score=30.39 Aligned_cols=103 Identities=17% Similarity=0.079 Sum_probs=59.7 Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272) .+.+||-.|++. .++..+++. .|.+|++++-++...+...+.+... .+++++.+|+.+.. .- T Consensus 4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238) T PRK05786 4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238) T ss_pred CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh Confidence 357899999853 333333332 4889999999887665554444332 26788999987643 01 Q ss_pred CCccEEEEechhhcc-Chhh--------------HHHHHHHHHhcCccCcEEEEEe Q 024096 100 NKYDRIISCGMIEHV-GHDY--------------MEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 100 ~~fD~V~~~~~~~~~-~~~~--------------~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +..|.++........ +..+ .-.+++.+...++++|.+++.. T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238) T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238) T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe Confidence 346877765432111 0011 1123455556667788777643 No 408 >cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic Probab=88.18 E-value=2.8 Score=35.67 Aligned_cols=98 Identities=29% Similarity=0.397 Sum_probs=59.2 Q ss_pred HcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCCc Q 024096 29 KARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANKY 102 (272) Q Consensus 29 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~f 102 (272) ...+.++.+||-.|| +.|..+..+++..++++++++.++...+.+++ .+...-+.....+. ........+ T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~~~~~~ 209 (323) T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALTGGRGV 209 (323) T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHcCCCCc Confidence 445678899999998 35666667777778899999998877766643 23211111111111 111123468 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) |+++.. .+ ...+..+.+.++++|.++.. T Consensus 210 d~v~~~-----~g----~~~~~~~~~~~~~~g~~v~~ 237 (323) T cd08241 210 DVVYDP-----VG----GDVFEASLRSLAWGGRLLVI 237 (323) T ss_pred EEEEEC-----cc----HHHHHHHHHhhccCCEEEEE Confidence 888753 21 12345566788999998763 No 409 >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional Probab=87.86 E-value=13 Score=31.06 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=58.3 Q ss_pred CCCEEEEECCCch-HHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C Q 024096 34 KGQEVLDIGCGWG-TLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272) Q Consensus 34 ~~~~vLDiG~G~G-~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272) .+.++|-.|+++| +++..++++ .+++|+.++.++...+...+.....+ .+.++.+|+.+.. . T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258) T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEE 85 (258) T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHH Confidence 4678999997652 444444333 47888888887644333333332222 3457788876643 1 Q ss_pred CCCccEEEEechhhc----------cChhhHHH-----------HHHHHHhcCccCcEEEEE Q 024096 99 ANKYDRIISCGMIEH----------VGHDYMEE-----------FFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~----------~~~~~~~~-----------~l~~~~~~LkpgG~l~i~ 139 (272) -++.|+++.+..+.. .+.+++.. +.+.+...|+.+|.++.. T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258) T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258) T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE Confidence 256899888754321 12222222 234556666777887653 No 410 >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). Probab=87.60 E-value=11 Score=29.40 Aligned_cols=93 Identities=12% Similarity=0.148 Sum_probs=61.2 Q ss_pred CCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272) ++.+|+-|||=+-.....-...++.++..+|++...... + ++ +|+.-|..+.. ..++||+|++. T Consensus 25 ~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~--~~-~F~fyD~~~p~~~~~~l~~~~d~vv~D 93 (162) T PF10237_consen 25 DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------G--GD-EFVFYDYNEPEELPEELKGKFDVVVID 93 (162) T ss_pred CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------C--Cc-ceEECCCCChhhhhhhcCCCceEEEEC Confidence 567999999977554443311267789999998743221 1 23 46666665533 23799999999 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+ +..+-.......+.-++|+++.+++. T Consensus 94 PPF--l~~ec~~k~a~ti~~L~k~~~kii~~ 122 (162) T PF10237_consen 94 PPF--LSEECLTKTAETIRLLLKPGGKIILC 122 (162) T ss_pred CCC--CCHHHHHHHHHHHHHHhCccceEEEe Confidence 988 44344445666677777898998874 No 411 >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone Probab=87.53 E-value=2.9 Score=36.01 Aligned_cols=98 Identities=27% Similarity=0.296 Sum_probs=59.5 Q ss_pred HHHcCCCCCCEEEEECCC--chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc--c----CCCCC Q 024096 27 IEKARVSKGQEVLDIGCG--WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD--Y----RQLPK 98 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d--~----~~~~~ 98 (272) .+...+.++.+||-.|.+ .|.....++...+.+++.++.++...+.++. .+. ...+-..+ . ..... T Consensus 159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~ 232 (342) T cd08266 159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKE----LGA--DYVIDYRKEDFVREVRELTG 232 (342) T ss_pred HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--CeEEecCChHHHHHHHHHhC Confidence 344567788899988875 5666666776678899999988877666533 232 11111111 0 00112 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ...+|+++.... . ..+..+.+.|+++|.++.. T Consensus 233 ~~~~d~~i~~~g-----~----~~~~~~~~~l~~~G~~v~~ 264 (342) T cd08266 233 KRGVDVVVEHVG-----A----ATWEKSLKSLARGGRLVTC 264 (342) T ss_pred CCCCcEEEECCc-----H----HHHHHHHHHhhcCCEEEEE Confidence 346888886432 1 2345566788999998764 No 412 >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] Probab=87.35 E-value=3.4 Score=37.03 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=50.2 Q ss_pred CEEEEECCC-chHHH-HHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEEEec Q 024096 36 QEVLDIGCG-WGTLA-IEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRIISCG 109 (272) Q Consensus 36 ~~vLDiG~G-~G~~~-~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~~~~ 109 (272) ++||=|||| .|... ..|++....+|+..|-|++..+.+..... .+++..+.|+.+.+ .-..+|+|++.. T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389) T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389) T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEEeC Confidence 579999996 33332 33344444799999999888777765532 37899999998876 225669999875 Q ss_pred hhh Q 024096 110 MIE 112 (272) Q Consensus 110 ~~~ 112 (272) .-. T Consensus 77 p~~ 79 (389) T COG1748 77 PPF 79 (389) T ss_pred Cch Confidence 433 No 413 >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. Probab=87.32 E-value=1.8 Score=36.46 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=44.0 Q ss_pred HHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhccChhhHHHHHHHHH Q 024096 49 AIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEHVGHDYMEEFFGCCE 127 (272) Q Consensus 49 ~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~ 127 (272) +..|.+. +..+|+|+|.++...+.+.+. |..+ -...+.+.+ ..+|+|+..-.+.. ...+++++. T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~~~~~~---~~~DlvvlavP~~~-----~~~~l~~~~ 66 (258) T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GIID---EASTDIEAV---EDADLVVLAVPVSA-----IEDVLEEIA 66 (258) T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSS---EEESHHHHG---GCCSEEEE-S-HHH-----HHHHHHHHH T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCee---eccCCHhHh---cCCCEEEEcCCHHH-----HHHHHHHhh Confidence 4556665 468999999999988877654 4321 122211222 45699998654443 467788887 Q ss_pred hcCccCcEEE Q 024096 128 SLLATHGLLV 137 (272) Q Consensus 128 ~~LkpgG~l~ 137 (272) ..+++|..+. T Consensus 67 ~~~~~~~iv~ 76 (258) T PF02153_consen 67 PYLKPGAIVT 76 (258) T ss_dssp CGS-TTSEEE T ss_pred hhcCCCcEEE Confidence 7777775543 No 414 >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] Probab=87.16 E-value=1.5 Score=37.48 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=61.5 Q ss_pred EEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE Q 024096 61 TGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 61 ~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) .-..+.+...+.++.+++ ++.++++|+.++- +.+..|.++...+=.++++.....+..++.+-+.+|.+++ T Consensus 290 lP~yl~~~~YEsir~n~~------RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vi 363 (414) T COG5379 290 LPAYLDEGVYESIRQNLR------RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVI 363 (414) T ss_pred CChhhchhhHHHHHhhhh------heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEE Confidence 445566777777777763 6899999987765 5689999999999999999889999999999999999999 Q ss_pred EE Q 024096 138 LQ 139 (272) Q Consensus 138 i~ 139 (272) +- T Consensus 364 fR 365 (414) T COG5379 364 FR 365 (414) T ss_pred Ee Confidence 84 No 415 >PRK10083 putative oxidoreductase; Provisional Probab=87.01 E-value=3.9 Score=35.51 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=58.3 Q ss_pred HHHHcCCCCCCEEEEECCC-chHHHHHHHHc-cCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC-CCC Q 024096 26 LIEKARVSKGQEVLDIGCG-WGTLAIEIVKQ-TGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LP-KAN 100 (272) Q Consensus 26 l~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~-~~~ 100 (272) +.....+.++.+||=.|+| .|..+..+++. .++ .+++++.+++..+.+++. |...-+.....++.+ +. ... T Consensus 152 ~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~g~ 227 (339) T PRK10083 152 VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKES----GADWVINNAQEPLGEALEEKGI 227 (339) T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHh----CCcEEecCccccHHHHHhcCCC Confidence 3445567889999999976 34455566664 476 488899888777776543 331111111111111 11 112 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+|+|+.. .+. ...+....+.|+++|+++.. T Consensus 228 ~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 258 (339) T PRK10083 228 KPTLIIDA-----ACH---PSILEEAVTLASPAARIVLM 258 (339) T ss_pred CCCEEEEC-----CCC---HHHHHHHHHHhhcCCEEEEE Confidence 34566542 211 24567778889999999863 No 416 >TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site. Probab=86.99 E-value=1.7 Score=37.98 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=57.5 Q ss_pred CCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCCccEE Q 024096 32 VSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANKYDRI 105 (272) Q Consensus 32 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~fD~V 105 (272) ..++.+||-.|+| .|..+..+++..+.+ +++++.++...+.+++. |...-+.....++ .+......+|+| T Consensus 159 ~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~v~~~~~~~~~~l~~~~~~~~~d~v 234 (340) T TIGR00692 159 PISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKM----GATYVVNPFKEDVVKEVADLTDGEGVDVF 234 (340) T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CCcEEEcccccCHHHHHHHhcCCCCCCEE Confidence 4577888887775 456667777777776 88888777666655543 3210011111111 111233568999 Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +... +. ...+..+.+.|+++|+++.. T Consensus 235 ld~~-----g~---~~~~~~~~~~l~~~g~~v~~ 260 (340) T TIGR00692 235 LEMS-----GA---PKALEQGLQAVTPGGRVSLL 260 (340) T ss_pred EECC-----CC---HHHHHHHHHhhcCCCEEEEE Confidence 8641 11 24567778889999998753 No 417 >cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty Probab=86.97 E-value=4.8 Score=35.08 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=60.4 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc----ccCC----CCC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC----DYRQ----LPK 98 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~----d~~~----~~~ 98 (272) +...+.++.+||=.|+| .|..+..+++..+.++++++.+++..+.+++ .|.. +++.. +..+ ... T Consensus 159 ~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~~~~~~~~ 231 (345) T cd08260 159 HQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARE----LGAV---ATVNASEVEDVAAAVRDLTG 231 (345) T ss_pred HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH----hCCC---EEEccccchhHHHHHHHHhC Confidence 34456788899999875 4556666777778899999988887777743 2431 22211 1111 112 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) . .+|+|+.. ++. ...+....+.|+++|.++. T Consensus 232 ~-~~d~vi~~-----~g~---~~~~~~~~~~l~~~g~~i~ 262 (345) T cd08260 232 G-GAHVSVDA-----LGI---PETCRNSVASLRKRGRHVQ 262 (345) T ss_pred C-CCCEEEEc-----CCC---HHHHHHHHHHhhcCCEEEE Confidence 2 68988864 211 2356667888999999875 No 418 >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic Probab=86.87 E-value=8 Score=33.63 Aligned_cols=97 Identities=28% Similarity=0.311 Sum_probs=58.8 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-C-CCCCccE Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-P-KANKYDR 104 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-~-~~~~fD~ 104 (272) ..+.+.++.+||=.|+| .|..+..+++..+.++++++.+++..+.+++. |.. .++...-.+. . ..+.+|+ T Consensus 163 ~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~----g~~---~vi~~~~~~~~~~~~~~~d~ 235 (337) T cd05283 163 KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKL----GAD---EFIATKDPEAMKKAAGSLDL 235 (337) T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc----CCc---EEecCcchhhhhhccCCceE Confidence 44567788888888874 45555666666788999999988777766432 321 1111111111 1 2356888 Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) |+.. .+.+ ..+..+.+.|+++|+++.. T Consensus 236 v~~~-----~g~~---~~~~~~~~~l~~~G~~v~~ 262 (337) T cd05283 236 IIDT-----VSAS---HDLDPYLSLLKPGGTLVLV 262 (337) T ss_pred EEEC-----CCCc---chHHHHHHHhcCCCEEEEE Confidence 8843 2211 2356667888999998864 No 419 >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... Probab=86.77 E-value=8.9 Score=30.36 Aligned_cols=99 Identities=22% Similarity=0.285 Sum_probs=59.6 Q ss_pred EEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------C-C--------CCCeEEEEcccCCCCC Q 024096 37 EVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA-------G-L--------QDHIRFYLCDYRQLPK 98 (272) Q Consensus 37 ~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-------g-~--------~~~i~~~~~d~~~~~~ 98 (272) +|.=+|+|+=+ ++..++. .|.+|+.+|.+++.++.+++.+... + + ..++. ...|+.+. T Consensus 1 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180) T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180) T ss_dssp EEEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG-- T ss_pred CEEEEcCCHHHHHHHHHHHh-CCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH-- Confidence 46678998644 4444555 4899999999999998888876541 1 1 11333 33444433 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) ...|+|+=. +.+.+ +....+++++.+.+.|+-.|.-.+... T Consensus 77 -~~adlViEa-i~E~l--~~K~~~~~~l~~~~~~~~ilasnTSsl 117 (180) T PF02737_consen 77 -VDADLVIEA-IPEDL--ELKQELFAELDEICPPDTILASNTSSL 117 (180) T ss_dssp -CTESEEEE--S-SSH--HHHHHHHHHHHCCS-TTSEEEE--SSS T ss_pred -hhhheehhh-ccccH--HHHHHHHHHHHHHhCCCceEEecCCCC Confidence 256777643 23333 345789999999999998877654443 No 420 >PLN02178 cinnamyl-alcohol dehydrogenase Probab=86.77 E-value=3.5 Score=36.78 Aligned_cols=92 Identities=28% Similarity=0.320 Sum_probs=55.7 Q ss_pred CCCCEEEEECCC-chHHHHHHHHccCCEEEEEcCCHHH-HHHHHHHHHHcCCCCCeEEEEc-ccCCCC-CCCCccEEEEe Q 024096 33 SKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITLSEEQ-LKYAEIKVREAGLQDHIRFYLC-DYRQLP-KANKYDRIISC 108 (272) Q Consensus 33 ~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~s~~~-~~~a~~~~~~~g~~~~i~~~~~-d~~~~~-~~~~fD~V~~~ 108 (272) .++.+||-.|+| .|..+..+++..++++++++.+++. .+.++ ..|.. .++.. +...+. ....+|+|+-. T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~~~~~v~~~~~~~D~vid~ 249 (375) T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD---SFLVTTDSQKMKEAVGTMDFIIDT 249 (375) T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc---EEEcCcCHHHHHHhhCCCcEEEEC Confidence 578999999886 5566677777778899999877543 33332 23431 12211 111111 11257888753 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+. ...+....+.++++|+++.. T Consensus 250 -----~G~---~~~~~~~~~~l~~~G~iv~v 272 (375) T PLN02178 250 -----VSA---EHALLPLFSLLKVSGKLVAL 272 (375) T ss_pred -----CCc---HHHHHHHHHhhcCCCEEEEE Confidence 221 23566777889999999864 No 421 >KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning] Probab=86.57 E-value=2 Score=38.03 Aligned_cols=69 Identities=12% Similarity=0.076 Sum_probs=58.3 Q ss_pred HHcCCCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC Q 024096 28 EKARVSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP 97 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~ 97 (272) .-++..+|.+|+|+.|-.|.-+.+++.- ...++.++|.++...+..++.+...|.. .+....+|+...+ T Consensus 207 ~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~ 277 (413) T KOG2360|consen 207 HLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTA 277 (413) T ss_pred hhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCC Confidence 4456678899999999999999988876 3579999999999999999999988874 6677799988755 No 422 >cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu Probab=86.43 E-value=2.6 Score=37.20 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=58.7 Q ss_pred CCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CCCCCC Q 024096 31 RVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LPKANK 101 (272) Q Consensus 31 ~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~~~~~ 101 (272) .+.++.+||-.|+| .|..+..+++..+.+ +++++.++...+.+++. |. ..++..+-.. ...... T Consensus 184 ~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~----g~---~~v~~~~~~~~~~~l~~~~~~~~ 256 (367) T cd08263 184 DVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKEL----GA---THTVNAAKEDAVAAIREITGGRG 256 (367) T ss_pred cCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CC---ceEecCCcccHHHHHHHHhCCCC Confidence 34678888887765 555666677766776 99998888777766432 32 1222221111 113356 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +|+|+.. ++.. ..+..+.+.|+++|+++.. T Consensus 257 ~d~vld~-----vg~~---~~~~~~~~~l~~~G~~v~~ 286 (367) T cd08263 257 VDVVVEA-----LGKP---ETFKLALDVVRDGGRAVVV 286 (367) T ss_pred CCEEEEe-----CCCH---HHHHHHHHHHhcCCEEEEE Confidence 9999863 2211 3567778899999998763 No 423 >COG0863 DNA modification methylase [DNA replication, recombination, and repair] Probab=86.26 E-value=4 Score=34.86 Aligned_cols=61 Identities=26% Similarity=0.339 Sum_probs=49.5 Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc Q 024096 18 GQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA 80 (272) Q Consensus 18 aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~ 80 (272) .-......++.. ...+++.|||.=+|+|.......+ .+...+|+|+++..++.+.+++... T Consensus 207 ~P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~-~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302) T COG0863 207 KPLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKN-LGRRFIGIEINPEYVEVALKRLQEG 267 (302) T ss_pred ChHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHH-cCCceEEEecCHHHHHHHHHHHHhh Confidence 334445666666 567899999999999999887666 4889999999999999999998654 No 424 >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=86.11 E-value=17 Score=30.79 Aligned_cols=96 Identities=19% Similarity=0.245 Sum_probs=60.9 Q ss_pred cCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-CC-CCCCccEE Q 024096 30 ARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-LP-KANKYDRI 105 (272) Q Consensus 30 l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-~~-~~~~fD~V 105 (272) ..+.++.+||=.|+ +.|..+..+++..++++++++.+++..+.+++ .|.. .+-....+..+ +. ....+|+| T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~i~~~~~~~d~v 212 (320) T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKE----LGAD-EVVIDDGAIAEQLRAAPGGFDKV 212 (320) T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCc-EEEecCccHHHHHHHhCCCceEE Confidence 34678899999885 57778888888888999999988877666643 2431 11111111100 00 13568888 Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +.. .+ ...+....+.|+++|+++.. T Consensus 213 l~~-----~~----~~~~~~~~~~l~~~g~~v~~ 237 (320) T cd08243 213 LEL-----VG----TATLKDSLRHLRPGGIVCMT 237 (320) T ss_pred EEC-----CC----hHHHHHHHHHhccCCEEEEE Confidence 853 22 23566777889999998764 No 425 >cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical Probab=85.92 E-value=14 Score=32.01 Aligned_cols=95 Identities=21% Similarity=0.294 Sum_probs=57.5 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CCC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LPK 98 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~~ 98 (272) ......++.+||=.|+| .|..+..+++..+. ++++++.+++..+.+++ .|. ..+..+-.+ ... T Consensus 161 ~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~----~~~~~~~~~~~~~l~~~~~ 232 (344) T cd08284 161 KRAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAA----LGA----EPINFEDAEPVERVREATE 232 (344) T ss_pred HhcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----hCC----eEEecCCcCHHHHHHHHhC Confidence 33556778899888765 34455666666775 89999887766655544 232 112111111 112 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) ...+|+|+.. .+. ...+....+.|+++|+++. T Consensus 233 ~~~~dvvid~-----~~~---~~~~~~~~~~l~~~g~~v~ 264 (344) T cd08284 233 GRGADVVLEA-----VGG---AAALDLAFDLVRPGGVISS 264 (344) T ss_pred CCCCCEEEEC-----CCC---HHHHHHHHHhcccCCEEEE Confidence 3568988853 211 2456677888899999875 No 426 >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function. Probab=85.83 E-value=3.1 Score=35.89 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=69.3 Q ss_pred CEEEEECCCchHHHHHHHHcc---------------------CCEEEEEcCCH--HHHHHHHHHHHHc------------ Q 024096 36 QEVLDIGCGWGTLAIEIVKQT---------------------GCKYTGITLSE--EQLKYAEIKVREA------------ 80 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~~---------------------~~~v~gvd~s~--~~~~~a~~~~~~~------------ 80 (272) .+||-||.|-|.=...++... ...++.+|+.+ ..++.....+... T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315) T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315) T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc Confidence 699999999986333322210 14899999975 4445554444333 Q ss_pred CC--C--CCeEEEEcccCCCCCC--------CCccEEEEechhhcc---ChhhHHHHHHHHHhcCccCcEEEEEeecC Q 024096 81 GL--Q--DHIRFYLCDYRQLPKA--------NKYDRIISCGMIEHV---GHDYMEEFFGCCESLLATHGLLVLQFISA 143 (272) Q Consensus 81 g~--~--~~i~~~~~d~~~~~~~--------~~fD~V~~~~~~~~~---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 143 (272) .. + -++.|.+.|+..+..+ ...++|...+++.-+ ....-..++.++-..++||..++|.+... T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315) T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315) T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC Confidence 01 1 1478999999887721 245777665554432 11334679999999999999999976553 No 427 >cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=85.66 E-value=13 Score=31.43 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=59.9 Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272) ..+...++.+||=.|+ +.|..+..+++..+.++++++.+++..+.+++ .|.. ..+. +..+.. +..+|++ T Consensus 126 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~--~~~~--~~~~~~-~~~~d~v 196 (305) T cd08270 126 RRGGPLLGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRE----LGAA--EVVV--GGSELS-GAPVDLV 196 (305) T ss_pred HHhCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc--EEEe--cccccc-CCCceEE Confidence 3444446889999987 46667777777778899999988877766654 2432 1111 111122 2468888 Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +.. ++. ..+....+.|+++|+++.. T Consensus 197 l~~-----~g~----~~~~~~~~~l~~~G~~v~~ 221 (305) T cd08270 197 VDS-----VGG----PQLARALELLAPGGTVVSV 221 (305) T ss_pred EEC-----CCc----HHHHHHHHHhcCCCEEEEE Confidence 853 221 2466778889999998863 No 428 >cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo Probab=85.56 E-value=18 Score=32.09 Aligned_cols=107 Identities=23% Similarity=0.169 Sum_probs=62.6 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCCCC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKANK 101 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~~~ 101 (272) ....+.++.+||-.|+| .|..+..+++..+. ++++++.++...+.+++. |. ..+.....+. .++.. .. T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~----g~-~~v~~~~~~~~~~i~~~~~-~~ 243 (375) T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESI----GA-IPIDFSDGDPVEQILGLEP-GG 243 (375) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC-eEeccCcccHHHHHHHhhC-CC Confidence 45567788999988887 46666777776675 798999888776666542 32 0010000110 11112 46 Q ss_pred ccEEEEechhh---ccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 102 YDRIISCGMIE---HVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 102 fD~V~~~~~~~---~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +|+|+-.-.-. +....+....+.++.+.|+++|.+.... T Consensus 244 ~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g 285 (375) T cd08282 244 VDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVG 285 (375) T ss_pred CCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEe Confidence 88887642211 0000012345778889999999996543 No 429 >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] Probab=85.38 E-value=2.8 Score=36.68 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=54.6 Q ss_pred CCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCC---C-CccEEEEech Q 024096 35 GQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKA---N-KYDRIISCGM 110 (272) Q Consensus 35 ~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~---~-~fD~V~~~~~ 110 (272) ..+++|+-||.|++..-+.+..-.-+.++|+++..++.-+.+.. ...+...|+.+.... . .+|+++.... T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~------~~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328) T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP------HGDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328) T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC------CCceeechHhhcChhhccccCCCEEEeCCC Confidence 46899999999999987777622356799999988877776642 246777887766621 2 7899999876 Q ss_pred hhcc Q 024096 111 IEHV 114 (272) Q Consensus 111 ~~~~ 114 (272) .+.+ T Consensus 77 CQ~F 80 (328) T COG0270 77 CQDF 80 (328) T ss_pred Ccch Confidence 6555 No 430 >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin Probab=85.25 E-value=15 Score=31.75 Aligned_cols=90 Identities=14% Similarity=0.157 Sum_probs=53.2 Q ss_pred CCCEEEEE--CCC-chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-------CCCCCcc Q 024096 34 KGQEVLDI--GCG-WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-------PKANKYD 103 (272) Q Consensus 34 ~~~~vLDi--G~G-~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-------~~~~~fD 103 (272) ++.++|=+ |+| .|..+..+++..++++++++.++...+.+++ .|.. .++..+-.+. .....+| T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~---~~i~~~~~~~~~~v~~~~~~~~~d 214 (324) T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKK----IGAE---YVLNSSDPDFLEDLKELIAKLNAT 214 (324) T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCccHHHHHHHHhCCCCCc Confidence 34444443 443 6667777887788899999999887777765 2421 2222221111 1224689 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +|+-. .+.. ......+.|+++|+++.. T Consensus 215 ~vid~-----~g~~----~~~~~~~~l~~~G~~v~~ 241 (324) T cd08291 215 IFFDA-----VGGG----LTGQILLAMPYGSTLYVY 241 (324) T ss_pred EEEEC-----CCcH----HHHHHHHhhCCCCEEEEE Confidence 88853 2212 233456678999998864 No 431 >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional Probab=85.14 E-value=13 Score=33.35 Aligned_cols=112 Identities=11% Similarity=0.113 Sum_probs=70.6 Q ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC-eEEEEccc Q 024096 15 LEVGQMRKVSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH-IRFYLCDY 93 (272) Q Consensus 15 l~~aq~~~~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~-i~~~~~d~ 93 (272) ++.|....++.+.+.. .. .+||-++=..|.++..++.. +.. ...| |--.....+.|++.++++.. +++... . T Consensus 28 wdaade~ll~~~~~~~-~~--~~~~i~nd~fGal~~~l~~~-~~~-~~~d-s~~~~~~~~~n~~~n~~~~~~~~~~~~-~ 100 (378) T PRK15001 28 WEAADEYLLQQLDDTE-IR--GPVLILNDAFGALSCALAEH-KPY-SIGD-SYISELATRENLRLNGIDESSVKFLDS-T 100 (378) T ss_pred cccHHHHHHHHHhhcc-cC--CCEEEEcCchhHHHHHHHhC-CCC-eeeh-HHHHHHHHHHHHHHcCCCcccceeecc-c Confidence 4455555556555532 11 28999999999999999965 222 1233 33344556778888887543 444422 1 Q ss_pred CCCCCCCCccEEEEechhhccCh--hhHHHHHHHHHhcCccCcEEEEEe Q 024096 94 RQLPKANKYDRIISCGMIEHVGH--DYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 94 ~~~~~~~~fD~V~~~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) .++ ++.+|+|+.. +|. ......+..+...|.||+.+++.. T Consensus 101 ~~~--~~~~d~vl~~-----~PK~~~~l~~~l~~l~~~l~~~~~ii~g~ 142 (378) T PRK15001 101 ADY--PQQPGVVLIK-----VPKTLALLEQQLRALRKVVTSDTRIIAGA 142 (378) T ss_pred ccc--cCCCCEEEEE-----eCCCHHHHHHHHHHHHhhCCCCCEEEEEE Confidence 222 3568998875 332 244677888999999999987643 No 432 >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy Probab=85.03 E-value=16 Score=31.86 Aligned_cols=93 Identities=23% Similarity=0.291 Sum_probs=58.0 Q ss_pred CCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC----CC--CCCCcc Q 024096 32 VSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ----LP--KANKYD 103 (272) Q Consensus 32 ~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~----~~--~~~~fD 103 (272) ..++.+||-.|+| .|..+..+++..+. ++++++.++...+.+++. |.. .++...-.. +. ..+.+| T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~---~~~~~~~~~~~~~~~~~~~~~~d 245 (350) T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA----GAD---VVVNGSDPDAAKRIIKAAGGGVD 245 (350) T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh----CCc---EEecCCCccHHHHHHHHhCCCCc Confidence 3477899999876 45566777777777 789999888877776442 331 222211111 11 112688 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +|+.. .+. ...+....+.|+++|+++.. T Consensus 246 ~vid~-----~g~---~~~~~~~~~~l~~~g~~v~~ 273 (350) T cd08240 246 AVIDF-----VNN---SATASLAFDILAKGGKLVLV 273 (350) T ss_pred EEEEC-----CCC---HHHHHHHHHHhhcCCeEEEE Confidence 88853 211 24577778889999998853 No 433 >cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=85.00 E-value=13 Score=32.38 Aligned_cols=94 Identities=23% Similarity=0.303 Sum_probs=58.3 Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-----CCCCCC Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-----QLPKAN 100 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-----~~~~~~ 100 (272) +...+.++.+||=.|+ +.|..+..+++..++++++++.+. ..+.++ ..|. . .+...+-. ...... T Consensus 171 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~----~~g~--~-~~~~~~~~~~~~~~~~~~~ 242 (350) T cd08274 171 ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVR----ALGA--D-TVILRDAPLLADAKALGGE 242 (350) T ss_pred hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHH----hcCC--e-EEEeCCCccHHHHHhhCCC Confidence 4556778999999997 466677777777888998887543 444443 2343 1 22211111 011335 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .+|+|+.. .+ ...+....+.|+++|+++. T Consensus 243 ~~d~vi~~-----~g----~~~~~~~~~~l~~~G~~v~ 271 (350) T cd08274 243 PVDVVADV-----VG----GPLFPDLLRLLRPGGRYVT 271 (350) T ss_pred CCcEEEec-----CC----HHHHHHHHHHhccCCEEEE Confidence 68988853 21 1246667889999999875 No 434 >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... Probab=85.00 E-value=4.3 Score=31.31 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=56.4 Q ss_pred EEEEECCCchHHHH--HHHHccCCEEEEEcCCHHHHHHHHHHHHHc------CCCCCeEEEEcccCCCCCCCCccEEEEe Q 024096 37 EVLDIGCGWGTLAI--EIVKQTGCKYTGITLSEEQLKYAEIKVREA------GLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272) Q Consensus 37 ~vLDiG~G~G~~~~--~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~------g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272) +|.=+|+|.++.+. .+++ .+.+|+....+++.++..++.-... .++.++.+ ..|..+.- +..|+|+.. T Consensus 1 KI~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~--~~ad~Iiia 76 (157) T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-NGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL--EDADIIIIA 76 (157) T ss_dssp EEEEESSSHHHHHHHHHHHH-CTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH--TT-SEEEE- T ss_pred CEEEECcCHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh--CcccEEEec Confidence 46678999776543 3444 4779999999998887776643211 11223433 33433221 456888874 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) +|....+.+++++...++++-.+++ T Consensus 77 -----vPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157) T PF01210_consen 77 -----VPSQAHREVLEQLAPYLKKGQIIIS 101 (157) T ss_dssp -----S-GGGHHHHHHHHTTTSHTT-EEEE T ss_pred -----ccHHHHHHHHHHHhhccCCCCEEEE Confidence 3334457899999999977766665 No 435 >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] Probab=84.98 E-value=6.3 Score=33.98 Aligned_cols=103 Identities=20% Similarity=0.317 Sum_probs=72.8 Q ss_pred HHHHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---CC Q 024096 25 VLIEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---KA 99 (272) Q Consensus 25 ~l~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---~~ 99 (272) -+++--..++|.+|+--|+ +.|+..-++|+..+++|+|+--+++-++++.+.+ |....+.+...|+.+.. .+ T Consensus 141 gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~l---GfD~~idyk~~d~~~~L~~a~P 217 (340) T COG2130 141 GLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL---GFDAGIDYKAEDFAQALKEACP 217 (340) T ss_pred HHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhc---CCceeeecCcccHHHHHHHHCC Confidence 3455555778888877654 3778888899888999999999998888877643 55445666666654422 34 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +..|+.+- +++ ..+++.+...|++.+++.+. T Consensus 218 ~GIDvyfe-----NVG----g~v~DAv~~~ln~~aRi~~C 248 (340) T COG2130 218 KGIDVYFE-----NVG----GEVLDAVLPLLNLFARIPVC 248 (340) T ss_pred CCeEEEEE-----cCC----chHHHHHHHhhccccceeee Confidence 67888773 454 34666677788999999873 No 436 >cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=84.88 E-value=17 Score=30.79 Aligned_cols=96 Identities=26% Similarity=0.339 Sum_probs=53.9 Q ss_pred CCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CCCCCCCCccEEEEe Q 024096 32 VSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-RQLPKANKYDRIISC 108 (272) Q Consensus 32 ~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~~~~~~~fD~V~~~ 108 (272) +.++.+||-.|+ +.|.....+++..++++++++.+ ...+.++ ..|...-+.....+. ........+|+|+.. T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 215 (319) T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVR----SLGADEVIDYTTEDFVALTAGGEKYDVIFDA 215 (319) T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHH----HcCCCEeecCCCCCcchhccCCCCCcEEEEC Confidence 678899999997 36777778887788899998853 4444443 234311111111111 112234568999864 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..- . .......+. .|+++|+++.. T Consensus 216 ~~~-----~-~~~~~~~~~-~l~~~g~~i~~ 239 (319) T cd08267 216 VGN-----S-PFSLYRASL-ALKPGGRYVSV 239 (319) T ss_pred CCc-----h-HHHHHHhhh-ccCCCCEEEEe Confidence 211 1 112222222 38999999864 No 437 >cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Probab=84.79 E-value=3.4 Score=36.00 Aligned_cols=96 Identities=22% Similarity=0.290 Sum_probs=59.2 Q ss_pred HcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-------cCCCCCC Q 024096 29 KARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-------YRQLPKA 99 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-------~~~~~~~ 99 (272) ...+.++.+||=.||| .|..+..+++..+. .+++++.++...+.+++ .|.. .++... +...... T Consensus 163 ~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~ga~---~v~~~~~~~~~~~i~~~~~~ 235 (345) T cd08287 163 SAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALARE----FGAT---DIVAERGEEAVARVRELTGG 235 (345) T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---eEecCCcccHHHHHHHhcCC Confidence 4566778888888876 45566677777676 48899888765555543 2331 222111 1112233 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+|+|+.. .+. ...+..+.+.++++|+++.. T Consensus 236 ~~~d~il~~-----~g~---~~~~~~~~~~l~~~g~~v~~ 267 (345) T cd08287 236 VGADAVLEC-----VGT---QESMEQAIAIARPGGRVGYV 267 (345) T ss_pred CCCCEEEEC-----CCC---HHHHHHHHHhhccCCEEEEe Confidence 468888853 211 35677788889999998864 No 438 >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha Probab=84.42 E-value=3.4 Score=35.93 Aligned_cols=96 Identities=24% Similarity=0.338 Sum_probs=61.9 Q ss_pred HcCCCCCCEEEEECCC--chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---cc----CCCCCC Q 024096 29 KARVSKGQEVLDIGCG--WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---DY----RQLPKA 99 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d~----~~~~~~ 99 (272) .+.+.++.+||=.|++ .|..+..+++..+.+++.++.++...+.+++ .|.. .++.. +. ...... T Consensus 160 ~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~ 232 (341) T cd08297 160 KAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKE----LGAD---AFVDFKKSDDVEAVKELTGG 232 (341) T ss_pred hcCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCCc---EEEcCCCccHHHHHHHHhcC Confidence 3467788999998875 6777788888888899999988876665533 2321 12211 11 111123 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+|+|+... . . ...+..+.+.|+++|+++.. T Consensus 233 ~~vd~vl~~~----~--~--~~~~~~~~~~l~~~g~~v~~ 264 (341) T cd08297 233 GGAHAVVVTA----V--S--AAAYEQALDYLRPGGTLVCV 264 (341) T ss_pred CCCCEEEEcC----C--c--hHHHHHHHHHhhcCCEEEEe Confidence 5689988521 1 0 24566677888999999864 No 439 >PTZ00075 Adenosylhomocysteinase; Provisional Probab=84.35 E-value=3.4 Score=38.03 Aligned_cols=96 Identities=9% Similarity=0.090 Sum_probs=56.6 Q ss_pred HHHHHHcC-CCCCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCC Q 024096 24 SVLIEKAR-VSKGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANK 101 (272) Q Consensus 24 ~~l~~~l~-~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272) +.+++..+ .-.|.+|+=+|+|. |......++..+++|+.+|.++.....+.. .| +.+. ++.++. .. T Consensus 242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----~G----~~~~--~leell--~~ 309 (476) T PTZ00075 242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM----EG----YQVV--TLEDVV--ET 309 (476) T ss_pred HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----cC----ceec--cHHHHH--hc Confidence 44444433 23689999999996 333333333378899999988765433322 12 2222 232222 46 Q ss_pred ccEEEEechhhccChhhHHHHH-HHHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFF-GCCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~i~ 139 (272) .|+|++...- ..++ ++....||||++++-. T Consensus 310 ADIVI~atGt--------~~iI~~e~~~~MKpGAiLINv 340 (476) T PTZ00075 310 ADIFVTATGN--------KDIITLEHMRRMKNNAIVGNI 340 (476) T ss_pred CCEEEECCCc--------ccccCHHHHhccCCCcEEEEc Confidence 8999875321 2333 3677789999998853 No 440 >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed Probab=84.22 E-value=16 Score=33.35 Aligned_cols=88 Identities=15% Similarity=0.117 Sum_probs=55.1 Q ss_pred EEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEEe Q 024096 37 EVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIISC 108 (272) Q Consensus 37 ~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~~ 108 (272) +|+=+|+ |..+..+++. .+.+++.+|.+++.++.+++. ..+.++.+|..+.. ....+|.|++. T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453) T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-------LDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453) T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-------cCEEEEEeCCCCHHHHHHcCCCcCCEEEEe Confidence 5777777 5555555553 478999999999877766542 14788889886643 23578888875 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .. +......+....+.+.|.-.+++ T Consensus 73 ~~-----~~~~n~~~~~~~r~~~~~~~ii~ 97 (453) T PRK09496 73 TD-----SDETNMVACQIAKSLFGAPTTIA 97 (453) T ss_pred cC-----ChHHHHHHHHHHHHhcCCCeEEE Confidence 32 22234444455555545555554 No 441 >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed Probab=84.20 E-value=16 Score=35.76 Aligned_cols=151 Identities=16% Similarity=0.083 Sum_probs=85.6 Q ss_pred CEEEEECCCch--HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------CC---------CCCeEEEEcccCCCC Q 024096 36 QEVLDIGCGWG--TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA-------GL---------QDHIRFYLCDYRQLP 97 (272) Q Consensus 36 ~~vLDiG~G~G--~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-------g~---------~~~i~~~~~d~~~~~ 97 (272) .+|.=||+|+= +++..++...|.+|+.+|.+++.++.+..++... +. ..++++. .|... T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-- 386 (708) T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDYRG-- 386 (708) T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CChHH-- Confidence 68999999973 3555555335899999999999988877655332 11 0133333 12221 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCc-cccccCcchhhhhccc-CCCCC------- Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQC-YDEYRLSPGFIKEYIF-PGGCL------- 168 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-~~~~~~~~~~~~~~~~-p~~~~------- 168 (272) -...|+|+=. +.+.+ +-..++++++.+.++|+..|.-.+.+.+-.. .....+...++..+++ |...+ T Consensus 387 -~~~aDlViEa-v~E~~--~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~ 462 (708) T PRK11154 387 -FKHADVVIEA-VFEDL--ALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIP 462 (708) T ss_pred -hccCCEEeec-ccccH--HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEEC Confidence 2456777643 44544 3457899999999999987765444433221 1112223344444444 22211 Q ss_pred -----CCHHHHHHHhhcCCCcEEEEEEecC Q 024096 169 -----PSLGRVTSAMTSSSGLCVEHLENIG 193 (272) Q Consensus 169 -----~~~~~~~~~l~~~~Gf~v~~~~~~~ 193 (272) +..-+....+.++.|...+.+.+.. T Consensus 463 g~~Ts~~~~~~~~~~~~~~gk~pv~v~d~p 492 (708) T PRK11154 463 HAKTSAETIATTVALAKKQGKTPIVVRDGA 492 (708) T ss_pred CCCCCHHHHHHHHHHHHHcCCceEEEeccC Confidence 1112223345667888777776644 No 442 >cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone Probab=84.19 E-value=3.3 Score=35.12 Aligned_cols=96 Identities=26% Similarity=0.285 Sum_probs=61.1 Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-------CCCC Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-------QLPK 98 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-------~~~~ 98 (272) +...+.++.+||=.|+ +.|..+..+++..+.++++++.++...+.+++ .|.. .++..+-. .... T Consensus 130 ~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 202 (320) T cd05286 130 ETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITG 202 (320) T ss_pred HhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcC Confidence 3445678899999984 46677777887788999999988877766643 2431 22222111 1112 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ...+|+|+.. .+ ...+....+.|+++|+++.. T Consensus 203 ~~~~d~vl~~-----~~----~~~~~~~~~~l~~~g~~v~~ 234 (320) T cd05286 203 GRGVDVVYDG-----VG----KDTFEGSLDSLRPRGTLVSF 234 (320) T ss_pred CCCeeEEEEC-----CC----cHhHHHHHHhhccCcEEEEE Confidence 3468988853 21 12455667888999998853 No 443 >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i Probab=84.01 E-value=4.5 Score=34.49 Aligned_cols=97 Identities=24% Similarity=0.323 Sum_probs=58.6 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCCE-EEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CCC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCK-YTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LPK 98 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~-v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~~ 98 (272) ....+.++.+||=.|+| .|..+..+++..+.+ ++++..+++..+.+++ .|.. .++...-.+ ... T Consensus 123 ~~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~l~~~~~ 195 (312) T cd08269 123 RRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARE----LGAT---EVVTDDSEAIVERVRELTG 195 (312) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCc---eEecCCCcCHHHHHHHHcC Confidence 34556788888888754 445556666667888 9998888776664432 2331 222211111 112 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ...+|+++... +. ...+....+.|+++|+++.. T Consensus 196 ~~~vd~vld~~-----g~---~~~~~~~~~~l~~~g~~~~~ 228 (312) T cd08269 196 GAGADVVIEAV-----GH---QWPLDLAGELVAERGRLVIF 228 (312) T ss_pred CCCCCEEEECC-----CC---HHHHHHHHHHhccCCEEEEE Confidence 35689998641 11 23566677889999998864 No 444 >PRK05708 2-dehydropantoate 2-reductase; Provisional Probab=83.88 E-value=9.4 Score=33.00 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=54.6 Q ss_pred CEEEEECCC-ch-HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC----CCeEEEEcccCCCCCCCCccEEEEec Q 024096 36 QEVLDIGCG-WG-TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ----DHIRFYLCDYRQLPKANKYDRIISCG 109 (272) Q Consensus 36 ~~vLDiG~G-~G-~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~----~~i~~~~~d~~~~~~~~~fD~V~~~~ 109 (272) ++|+=+|+| .| .++..|++. +..|+.++-+++.++..++. .|+. .............+..+.+|+|+..- T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305) T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305) T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCCcccccccCEEEEEC Confidence 578999998 34 466666664 78899999876555544432 1220 01011111111111235799998764 Q ss_pred hhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 110 MIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 110 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) =-.+ ....++.+...+.++..++. T Consensus 79 K~~~-----~~~al~~l~~~l~~~t~vv~ 102 (305) T PRK05708 79 KAYD-----AEPAVASLAHRLAPGAELLL 102 (305) T ss_pred CHHh-----HHHHHHHHHhhCCCCCEEEE Confidence 3332 36778888889999887654 No 445 >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] Probab=83.68 E-value=6.8 Score=34.67 Aligned_cols=91 Identities=26% Similarity=0.405 Sum_probs=56.0 Q ss_pred CHHHHHHHHHHHHHHHc------CCCCCCEEEEECCC--chHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCC Q 024096 14 DLEVGQMRKVSVLIEKA------RVSKGQEVLDIGCG--WGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDH 85 (272) Q Consensus 14 ~l~~aq~~~~~~l~~~l------~~~~~~~vLDiG~G--~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~ 85 (272) .+..+-...+..+.... ..++|..||=+|.+ -|..++++|+..+...+...-|.+..+.+++. |-..- T Consensus 131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l----GAd~v 206 (347) T KOG1198|consen 131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL----GADEV 206 (347) T ss_pred cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc----CCcEe Confidence 34445555566666666 78889999988766 45678888888554444455677777777654 43222 Q ss_pred eEEEEcccCCCC-C--CCCccEEEEe Q 024096 86 IRFYLCDYRQLP-K--ANKYDRIISC 108 (272) Q Consensus 86 i~~~~~d~~~~~-~--~~~fD~V~~~ 108 (272) +.+...|..+.. . ...||+|+-+ T Consensus 207 vdy~~~~~~e~~kk~~~~~~DvVlD~ 232 (347) T KOG1198|consen 207 VDYKDENVVELIKKYTGKGVDVVLDC 232 (347) T ss_pred ecCCCHHHHHHHHhhcCCCccEEEEC Confidence 333333332222 2 4579999864 No 446 >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional Probab=83.56 E-value=7.1 Score=36.92 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=51.5 Q ss_pred HcCCCCCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHc-----CC--CCCeEEEEcccCCCC- Q 024096 29 KARVSKGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREA-----GL--QDHIRFYLCDYRQLP- 97 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~-----g~--~~~i~~~~~d~~~~~- 97 (272) .++.+.|.+||-.|+. |.++..++++ .|.+|++++.+..........+... |. ..++.++.+|+.+.. T Consensus 74 ~~~~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576) T PLN03209 74 ELDTKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576) T ss_pred ccccCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH Confidence 4455678889888864 4455544433 4789999988877665444333221 11 135889999998754 Q ss_pred ---CCCCccEEEEech Q 024096 98 ---KANKYDRIISCGM 110 (272) Q Consensus 98 ---~~~~fD~V~~~~~ 110 (272) .-+..|+|+++.. T Consensus 153 I~~aLggiDiVVn~AG 168 (576) T PLN03209 153 IGPALGNASVVICCIG 168 (576) T ss_pred HHHHhcCCCEEEEccc Confidence 2256898887643 No 447 >COG1255 Uncharacterized protein conserved in archaea [Function unknown] Probab=83.48 E-value=15 Score=26.84 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=54.2 Q ss_pred EEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC--CCCCccEEEEechhhc Q 024096 37 EVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP--KANKYDRIISCGMIEH 113 (272) Q Consensus 37 ~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~--~~~~fD~V~~~~~~~~ 113 (272) +|+|+|-|.=. .+..|+++ |..++++|+++. .+ +..+.++.-|+.+.. -=...|+|.|.-. T Consensus 16 kVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~---~a---------~~g~~~v~DDitnP~~~iY~~A~lIYSiRp--- 79 (129) T COG1255 16 KVVEVGIGFFLDVAKRLAER-GFDVLATDINEK---TA---------PEGLRFVVDDITNPNISIYEGADLIYSIRP--- 79 (129) T ss_pred cEEEEccchHHHHHHHHHHc-CCcEEEEecccc---cC---------cccceEEEccCCCccHHHhhCccceeecCC--- Confidence 99999998643 55666665 899999999886 11 136789999988765 2257899998632 Q ss_pred cChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 114 VGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ..++...+-.+++. -|..+++.. T Consensus 80 --ppEl~~~ildva~a--Vga~l~I~p 102 (129) T COG1255 80 --PPELQSAILDVAKA--VGAPLYIKP 102 (129) T ss_pred --CHHHHHHHHHHHHh--hCCCEEEEe Confidence 22333444344443 344555543 No 448 >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] Probab=83.46 E-value=1.1 Score=42.15 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.0 Q ss_pred CCCCCEEEEECCCchHHHHHHHHc--cCCEEEEEcCCH Q 024096 32 VSKGQEVLDIGCGWGTLAIEIVKQ--TGCKYTGITLSE 67 (272) Q Consensus 32 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~gvd~s~ 67 (272) +.++..|||+||.+|+++...++. .+.-|+|+|+-| T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780) T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780) T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee Confidence 468889999999999999888877 467899999866 No 449 >PRK12939 short chain dehydrogenase; Provisional Probab=83.33 E-value=18 Score=29.56 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=48.4 Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------C Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----------A 99 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----------~ 99 (272) ++.++|=.|+ +|.++..+++. .+.++++++.++.......+.++..+ .++.++.+|+.+... - T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250) T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250) T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc Confidence 4678887776 44444444433 47899999888776665555554433 368899999876431 1 Q ss_pred CCccEEEEech Q 024096 100 NKYDRIISCGM 110 (272) Q Consensus 100 ~~fD~V~~~~~ 110 (272) ++.|.|+.+.. T Consensus 83 ~~id~vi~~ag 93 (250) T PRK12939 83 GGLDGLVNNAG 93 (250) T ss_pred CCCCEEEECCC Confidence 46898887654 No 450 >cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d Probab=83.29 E-value=5.5 Score=34.53 Aligned_cols=94 Identities=30% Similarity=0.434 Sum_probs=57.1 Q ss_pred CCCCCCEEEEECCC-chHHHHHHHHccC-CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc------cCCCCCCCCc Q 024096 31 RVSKGQEVLDIGCG-WGTLAIEIVKQTG-CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD------YRQLPKANKY 102 (272) Q Consensus 31 ~~~~~~~vLDiG~G-~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d------~~~~~~~~~f 102 (272) .+.++.+||=.|+| .|..+..+++..+ .++++++.+++..+.+++ .|.. .++..+ +.+......+ T Consensus 164 ~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~i~~~~~~~~~ 236 (340) T cd05284 164 YLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAER----LGAD---HVLNASDDVVEEVRELTGGRGA 236 (340) T ss_pred cCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH----hCCc---EEEcCCccHHHHHHHHhCCCCC Confidence 35678899999865 3444455666655 789999888876665543 2431 222111 1112233468 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) |+|+.. .+. ...++...+.|+++|+++.. T Consensus 237 dvvld~-----~g~---~~~~~~~~~~l~~~g~~i~~ 265 (340) T cd05284 237 DAVIDF-----VGS---DETLALAAKLLAKGGRYVIV 265 (340) T ss_pred CEEEEc-----CCC---HHHHHHHHHHhhcCCEEEEE Confidence 999863 221 24567777888999999863 No 451 >PTZ00354 alcohol dehydrogenase; Provisional Probab=83.22 E-value=21 Score=30.64 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=60.4 Q ss_pred cCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc-cC----CCCCCCCc Q 024096 30 ARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD-YR----QLPKANKY 102 (272) Q Consensus 30 l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d-~~----~~~~~~~f 102 (272) ..+.++.+||=.|+ +.|..+..+++..+.+++.++.+++..+.+++ .|...-+.....+ .. .......+ T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (334) T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLTGEKGV 211 (334) T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHhCCCCc Confidence 45678889998874 47778888888778887778888887777643 2431001111111 11 11123568 Q ss_pred cEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 103 DRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 103 D~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) |+++... + ...+....+.|+++|+++.. T Consensus 212 d~~i~~~-----~----~~~~~~~~~~l~~~g~~i~~ 239 (334) T PTZ00354 212 NLVLDCV-----G----GSYLSETAEVLAVDGKWIVY 239 (334) T ss_pred eEEEECC-----c----hHHHHHHHHHhccCCeEEEE Confidence 8888632 1 24566677889999998853 No 452 >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... Probab=83.18 E-value=10 Score=28.66 Aligned_cols=86 Identities=22% Similarity=0.269 Sum_probs=50.7 Q ss_pred EEEECCCc-hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc----------cCCCC-CCCCccE Q 024096 38 VLDIGCGW-GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD----------YRQLP-KANKYDR 104 (272) Q Consensus 38 vLDiG~G~-G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d----------~~~~~-~~~~fD~ 104 (272) |+=+|+|. |. ++..|++ .+.+|+.+.-++ ..+..++. | +.+...+ ..... ....+|+ T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~-~~~~~~~~----g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 70 (151) T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP-RLEAIKEQ----G----LTITGPDGDETVQPPIVISAPSADAGPYDL 70 (151) T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH-HHHHHHHH----C----EEEEETTEEEEEEEEEEESSHGHHHSTESE T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc-cHHhhhhe----e----EEEEecccceecccccccCcchhccCCCcE Confidence 45567773 33 3444444 588999999766 45543332 2 2222222 11111 3468999 Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) |+..---. +....++.+...++|+..+++ T Consensus 71 viv~vKa~-----~~~~~l~~l~~~~~~~t~iv~ 99 (151) T PF02558_consen 71 VIVAVKAY-----QLEQALQSLKPYLDPNTTIVS 99 (151) T ss_dssp EEE-SSGG-----GHHHHHHHHCTGEETTEEEEE T ss_pred EEEEeccc-----chHHHHHHHhhccCCCcEEEE Confidence 99863222 347889999999999977765 No 453 >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed Probab=83.15 E-value=31 Score=31.38 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=46.5 Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEE Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRI 105 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V 105 (272) +..+|+=+|+|. ++..+++. .+.+++.+|.+++.++..++.. ..+.++.+|..+.. .-+.+|.| T Consensus 230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453) T PRK09496 230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADAF 301 (453) T ss_pred CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCEE Confidence 457899998864 44444433 4789999999998877766541 25678999987643 23578888 Q ss_pred EEe Q 024096 106 ISC 108 (272) Q Consensus 106 ~~~ 108 (272) ++. T Consensus 302 i~~ 304 (453) T PRK09496 302 IAL 304 (453) T ss_pred EEC Confidence 764 No 454 >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A. Probab=83.05 E-value=6 Score=29.41 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=46.3 Q ss_pred CEEEEECCCchH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC--CCCccEEEEechhh Q 024096 36 QEVLDIGCGWGT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK--ANKYDRIISCGMIE 112 (272) Q Consensus 36 ~~vLDiG~G~G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~--~~~fD~V~~~~~~~ 112 (272) .+|+|+|-|.=. .+..|.++ |..|+++|+.+. ... ..+.++.-|+.+... =...|+|.|...-. T Consensus 15 ~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~ 81 (127) T PF03686_consen 15 GKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEIYEGADLIYSIRPPP 81 (127) T ss_dssp SEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--T T ss_pred CcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc-------ccc-----cCcceeeecccCCCHHHhcCCcEEEEeCCCh Confidence 499999999654 45555554 899999999886 111 256888888887541 15789999975433 Q ss_pred ccChhhHHHHHHHHHhcCccCcEEEEEeec Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLVLQFIS 142 (272) Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 142 (272) - +...+-++++ +-|.-+++.... T Consensus 82 E-----l~~~il~lA~--~v~adlii~pL~ 104 (127) T PF03686_consen 82 E-----LQPPILELAK--KVGADLIIRPLG 104 (127) T ss_dssp T-----SHHHHHHHHH--HHT-EEEEE-BT T ss_pred H-----HhHHHHHHHH--HhCCCEEEECCC Confidence 2 3444444554 346667775433 No 455 >KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only] Probab=82.99 E-value=0.67 Score=37.76 Aligned_cols=91 Identities=13% Similarity=0.167 Sum_probs=66.4 Q ss_pred HHHHHHHcCCCCCCEEEEECCCchHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC---- Q 024096 23 VSVLIEKARVSKGQEVLDIGCGWGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP---- 97 (272) Q Consensus 23 ~~~l~~~l~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~---- 97 (272) .+.+++-+...+|...+|+--|.|+-+..+.+. +..+++++|-+|.....|+...... .++++..+.+.+..++ T Consensus 32 ~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~~ 110 (303) T KOG2782|consen 32 LDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLIA 110 (303) T ss_pred hhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHHH Confidence 466778888889999999999999988888887 7889999999999888887766432 2334444555555443 Q ss_pred ----CCCCccEEEEechhhcc Q 024096 98 ----KANKYDRIISCGMIEHV 114 (272) Q Consensus 98 ----~~~~fD~V~~~~~~~~~ 114 (272) .+..+|-|........+ T Consensus 111 ~~gl~~~~vDGiLmDlGcSSM 131 (303) T KOG2782|consen 111 DTGLLDVGVDGILMDLGCSSM 131 (303) T ss_pred HhCCCcCCcceEEeecCcccc Confidence 34678888776544433 No 456 >cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr Probab=82.87 E-value=3.7 Score=35.25 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=62.2 Q ss_pred HHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CC Q 024096 27 IEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LP 97 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~ 97 (272) .+...+.++.+||=.|+ +.|..+..+++..+.++++++.+++..+.+++ .|.. .++...-.+ .. T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~ 207 (324) T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRA----LGAD---VAVDYTRPDWPDQVREAL 207 (324) T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCC---EEEecCCccHHHHHHHHc Confidence 34456778889999884 46777788888888999999988887766643 2331 122111111 11 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ....+|+|+.. .+. .......+.|+++|+++.. T Consensus 208 ~~~~~d~vl~~-----~g~----~~~~~~~~~l~~~g~~v~~ 240 (324) T cd08244 208 GGGGVTVVLDG-----VGG----AIGRAALALLAPGGRFLTY 240 (324) T ss_pred CCCCceEEEEC-----CCh----HhHHHHHHHhccCcEEEEE Confidence 23468999864 221 2346677889999998853 No 457 >PRK05225 ketol-acid reductoisomerase; Validated Probab=82.69 E-value=1.9 Score=39.29 Aligned_cols=91 Identities=18% Similarity=0.306 Sum_probs=53.8 Q ss_pred CCCCEEEEECCCchHHHHHHHHc-cCCEEE------EEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE Q 024096 33 SKGQEVLDIGCGWGTLAIEIVKQ-TGCKYT------GITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272) Q Consensus 33 ~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~------gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272) -.+.+|+=||||+=+.+..+--+ .|.+|+ ++|......+.|.+ .|. . ..+..+. -...|+| T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~----dGF----~--v~~~~Ea--~~~ADvV 101 (487) T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE----NGF----K--VGTYEEL--IPQADLV 101 (487) T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh----cCC----c--cCCHHHH--HHhCCEE Confidence 36789999999964432222111 344444 34443444444433 243 1 1222222 2578999 Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) ++. +|+.....+.+++...||||..|.++. T Consensus 102 viL-----lPDt~q~~v~~~i~p~LK~Ga~L~fsH 131 (487) T PRK05225 102 INL-----TPDKQHSDVVRAVQPLMKQGAALGYSH 131 (487) T ss_pred EEc-----CChHHHHHHHHHHHhhCCCCCEEEecC Confidence 985 444445667799999999999999854 No 458 >PRK05396 tdh L-threonine 3-dehydrogenase; Validated Probab=82.64 E-value=8.2 Score=33.57 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=57.5 Q ss_pred CCCCEEEEECCCc-hHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-------CCCCCCCcc Q 024096 33 SKGQEVLDIGCGW-GTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-------QLPKANKYD 103 (272) Q Consensus 33 ~~~~~vLDiG~G~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-------~~~~~~~fD 103 (272) .++.+||-.|+|. |..+..+++..+. ++++++.++...+.+++. |.. .++...-. .......+| T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~l----g~~---~~~~~~~~~~~~~~~~~~~~~~~d 234 (341) T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKM----GAT---RAVNVAKEDLRDVMAELGMTEGFD 234 (341) T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh----CCc---EEecCccccHHHHHHHhcCCCCCC Confidence 4678888888763 6667777777676 688888888766665542 331 22211111 112335689 Q ss_pred EEEEechhhccChhhHHHHHHHHHhcCccCcEEEEEe Q 024096 104 RIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQF 140 (272) Q Consensus 104 ~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 140 (272) +|+.. .+. ...+..+.+.|+++|.++... T Consensus 235 ~v~d~-----~g~---~~~~~~~~~~l~~~G~~v~~g 263 (341) T PRK05396 235 VGLEM-----SGA---PSAFRQMLDNMNHGGRIAMLG 263 (341) T ss_pred EEEEC-----CCC---HHHHHHHHHHHhcCCEEEEEe Confidence 88862 111 245666778899999998753 No 459 >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional Probab=82.47 E-value=28 Score=29.18 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=44.4 Q ss_pred CCCEEEEECCCch-H----HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----------- Q 024096 34 KGQEVLDIGCGWG-T----LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----------- 97 (272) Q Consensus 34 ~~~~vLDiG~G~G-~----~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----------- 97 (272) .+.++|=.|++.| + ++..+++. |++|+.++.+....+.+.+..... +.+.++.+|+.+.. T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~-G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~ 80 (262) T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGK 80 (262) T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHC-CCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHh Confidence 4678888998652 3 44555554 788888877643333333322221 24567888987643 Q ss_pred CCCCccEEEEechh Q 024096 98 KANKYDRIISCGMI 111 (272) Q Consensus 98 ~~~~fD~V~~~~~~ 111 (272) .-+++|+++.+..+ T Consensus 81 ~~g~iD~linnAg~ 94 (262) T PRK07984 81 VWPKFDGFVHSIGF 94 (262) T ss_pred hcCCCCEEEECCcc Confidence 12468998887653 No 460 >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process Probab=82.35 E-value=3.4 Score=29.14 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=45.9 Q ss_pred chhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCCccccccCcchhhhhcccCCCC-----CC-CHHHHHHHhhcCC Q 024096 109 GMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQCYDEYRLSPGFIKEYIFPGGC-----LP-SLGRVTSAMTSSS 182 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~-~~~~~~~~l~~~~ 182 (272) +++-|.+.++..+.++.+... -.|.++++-- |.... .....++. .+||++. .| ..+++.+. ..++ T Consensus 3 DvLIHYp~~d~~~~l~~La~~--t~~~~ifTfA--P~T~~---L~~m~~iG-~lFP~~dRsp~i~~~~e~~l~~~-l~~~ 73 (97) T PF07109_consen 3 DVLIHYPAEDAAQMLAHLASR--TRGSLIFTFA--PRTPL---LALMHAIG-KLFPRPDRSPRIYPHREEDLRRA-LAAA 73 (97) T ss_pred ceEeccCHHHHHHHHHHHHHh--ccCcEEEEEC--CCCHH---HHHHHHHh-ccCCCCCCCCcEEEeCHHHHHHH-HHhC Confidence 455678888888999998874 5677777422 22211 11112222 3455543 22 23455544 4459 Q ss_pred CcEEEEEEecCccHH Q 024096 183 GLCVEHLENIGIHYY 197 (272) Q Consensus 183 Gf~v~~~~~~~~~~~ 197 (272) ||.+...+.+...|+ T Consensus 74 g~~~~r~~ris~gFY 88 (97) T PF07109_consen 74 GWRIGRTERISSGFY 88 (97) T ss_pred CCeeeecccccCcCh Confidence 999988877665443 No 461 >cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino Probab=82.27 E-value=15 Score=31.52 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=60.1 Q ss_pred cCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC----C--CCCC Q 024096 30 ARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL----P--KANK 101 (272) Q Consensus 30 l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~--~~~~ 101 (272) ..+.++.+||=.|. +.|..+..+++..+.++++++.++...+.+++.+ |.. .++..+-.+. . .... T Consensus 141 ~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~---g~~---~~~~~~~~~~~~~v~~~~~~~ 214 (329) T cd05288 141 GKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEEL---GFD---AAINYKTPDLAEALKEAAPDG 214 (329) T ss_pred cCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhc---CCc---eEEecCChhHHHHHHHhccCC Confidence 45677889998884 4677777888877889999998887777665422 321 2221111010 1 1246 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +|+++.. .+ ...+....+.|+++|+++.. T Consensus 215 ~d~vi~~-----~g----~~~~~~~~~~l~~~G~~v~~ 243 (329) T cd05288 215 IDVYFDN-----VG----GEILDAALTLLNKGGRIALC 243 (329) T ss_pred ceEEEEc-----ch----HHHHHHHHHhcCCCceEEEE Confidence 8888753 22 23566777889999998753 No 462 >PRK07502 cyclohexadienyl dehydrogenase; Validated Probab=82.06 E-value=13 Score=32.16 Aligned_cols=88 Identities=22% Similarity=0.137 Sum_probs=51.3 Q ss_pred CCEEEEECCCchH--HHHHHHHccC--CEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEech Q 024096 35 GQEVLDIGCGWGT--LAIEIVKQTG--CKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGM 110 (272) Q Consensus 35 ~~~vLDiG~G~G~--~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~ 110 (272) ..+|.=||+|.-+ ++..+.+. + .+|+++|.++...+.+++ .|.. .. ...+..+ .....|+|+..-. T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~----~g~~--~~-~~~~~~~--~~~~aDvViiavp 75 (307) T PRK07502 6 FDRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARE----LGLG--DR-VTTSAAE--AVKGADLVILCVP 75 (307) T ss_pred CcEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHh----CCCC--ce-ecCCHHH--HhcCCCEEEECCC Confidence 3579999998633 33444443 4 489999999887666543 2321 11 1112111 1245798887643 Q ss_pred hhccChhhHHHHHHHHHhcCccCcEEE Q 024096 111 IEHVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 111 ~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) .. ....+++.+...++++..++ T Consensus 76 ~~-----~~~~v~~~l~~~l~~~~iv~ 97 (307) T PRK07502 76 VG-----ASGAVAAEIAPHLKPGAIVT 97 (307) T ss_pred HH-----HHHHHHHHHHhhCCCCCEEE Confidence 32 33566777777788887554 No 463 >PRK08507 prephenate dehydrogenase; Validated Probab=82.05 E-value=12 Score=31.76 Aligned_cols=84 Identities=23% Similarity=0.274 Sum_probs=49.0 Q ss_pred EEEEECCCc--hHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhhc Q 024096 37 EVLDIGCGW--GTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIEH 113 (272) Q Consensus 37 ~vLDiG~G~--G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~~ 113 (272) +|.=||+|. |.++..+.+. ...+++++|.++...+.+.+ .|.. .. ..+..+. ...|+|+.. T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~---~~-~~~~~~~---~~aD~Vila----- 65 (275) T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLV---DE-IVSFEEL---KKCDVIFLA----- 65 (275) T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCC---cc-cCCHHHH---hcCCEEEEe----- Confidence 567788885 3355555554 22489999999887666542 2321 11 1122222 127998875 Q ss_pred cChhhHHHHHHHHHhcCccCcEEE Q 024096 114 VGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 114 ~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) ++.......++++.. ++++..++ T Consensus 66 vp~~~~~~~~~~l~~-l~~~~iv~ 88 (275) T PRK08507 66 IPVDAIIEILPKLLD-IKENTTII 88 (275) T ss_pred CcHHHHHHHHHHHhc-cCCCCEEE Confidence 344445677788877 77776443 No 464 >PRK05854 short chain dehydrogenase; Provisional Probab=81.88 E-value=14 Score=31.84 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=50.1 Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272) Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272) .+.++|=.|++.|. ++..|++ .|++|+.+.-++...+.+.+.+....-..++.++.+|+.+.. .. T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~-~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313) T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAA-AGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313) T ss_pred CCCEEEEeCCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC Confidence 46788888876553 3344444 488999998887766665555543321236889999987754 12 Q ss_pred CCccEEEEechh Q 024096 100 NKYDRIISCGMI 111 (272) Q Consensus 100 ~~fD~V~~~~~~ 111 (272) ++.|+++.+... T Consensus 92 ~~iD~li~nAG~ 103 (313) T PRK05854 92 RPIHLLINNAGV 103 (313) T ss_pred CCccEEEECCcc Confidence 468998877544 No 465 >cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et Probab=81.61 E-value=27 Score=29.26 Aligned_cols=91 Identities=22% Similarity=0.363 Sum_probs=55.0 Q ss_pred CCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEc---ccCCCCCCCCccEEE Q 024096 32 VSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLC---DYRQLPKANKYDRII 106 (272) Q Consensus 32 ~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~---d~~~~~~~~~fD~V~ 106 (272) +.++.+||=.|+ +.|..+..+++..+.+++.++.++ ..+.++ ..+.. .++.. +..+......+|+++ T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~----~~g~~---~~~~~~~~~~~~~~~~~~~d~v~ 213 (309) T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLR----SLGAD---EVIDYTKGDFERAAAPGGVDAVL 213 (309) T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHH----HcCCC---EEEeCCCCchhhccCCCCceEEE Confidence 678889998886 356666667776788998887665 444442 23321 22221 111112334688887 Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .. .+ ...+....+.|+++|.++.. T Consensus 214 ~~-----~~----~~~~~~~~~~l~~~g~~v~~ 237 (309) T cd05289 214 DT-----VG----GETLARSLALVKPGGRLVSI 237 (309) T ss_pred EC-----Cc----hHHHHHHHHHHhcCcEEEEE Confidence 53 22 12566677888999998753 No 466 >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A. Probab=81.60 E-value=10 Score=25.50 Aligned_cols=45 Identities=22% Similarity=0.425 Sum_probs=24.8 Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCchH-HHHHHHHc--cCCEEEEEcC Q 024096 21 RKVSVLIEKARVSKGQEVLDIGCGWGT-LAIEIVKQ--TGCKYTGITL 65 (272) Q Consensus 21 ~~~~~l~~~l~~~~~~~vLDiG~G~G~-~~~~l~~~--~~~~v~gvd~ 65 (272) +.++.+..+-.+..+.+||-+||-+|. ++..++.. .++..+|+-. T Consensus 25 ~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78) T PF12242_consen 25 NQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78) T ss_dssp HHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE- T ss_pred HHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee Confidence 344555555555555899999999995 55445444 5677777765 No 467 >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina Probab=81.53 E-value=3.7 Score=35.26 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=60.6 Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CCC Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LPK 98 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~~ 98 (272) ....+.++.+||=.|+ +.|..+..+++..|++++.+.-+.+..+.+++ .|.. .++..+-.+ ... T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~~ 205 (324) T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRA----LGIG---PVVSTEQPGWQDKVREAAG 205 (324) T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHh----cCCC---EEEcCCCchHHHHHHHHhC Confidence 4456778999998875 37778888888888888888777766555543 2431 222221111 112 Q ss_pred CCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 99 ANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 99 ~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ...+|+|+.. .+. ..+.++.+.|+++|+++.. T Consensus 206 ~~~~d~v~d~-----~g~----~~~~~~~~~l~~~g~~v~~ 237 (324) T cd08292 206 GAPISVALDS-----VGG----KLAGELLSLLGEGGTLVSF 237 (324) T ss_pred CCCCcEEEEC-----CCC----hhHHHHHHhhcCCcEEEEE Confidence 3468998853 221 2345677889999998853 No 468 >PRK06522 2-dehydropantoate 2-reductase; Reviewed Probab=81.51 E-value=21 Score=30.48 Aligned_cols=92 Identities=13% Similarity=0.127 Sum_probs=52.0 Q ss_pred EEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC---CCeEEEEcccCCCCCCCCccEEEEechh Q 024096 37 EVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ---DHIRFYLCDYRQLPKANKYDRIISCGMI 111 (272) Q Consensus 37 ~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~---~~i~~~~~d~~~~~~~~~fD~V~~~~~~ 111 (272) +|+=+|+|.-+ ++..|++ .+.+|+.++.+++..+..++. |+. ........-..+......+|+|+..--- T Consensus 2 ~I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~ 76 (304) T PRK06522 2 KIAILGAGAIGGLFGAALAQ-AGHDVTLVARRGAHLDALNEN----GLRLEDGEITVPVLAADDPAELGPQDLVILAVKA 76 (304) T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECChHHHHHHHHc----CCcccCCceeecccCCCChhHcCCCCEEEEeccc Confidence 68889998543 4444555 377999999877665544432 321 1111000001111122678999876432 Q ss_pred hccChhhHHHHHHHHHhcCccCcEEEE Q 024096 112 EHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 112 ~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .+...+++.+...+.++..++. T Consensus 77 -----~~~~~~~~~l~~~l~~~~~iv~ 98 (304) T PRK06522 77 -----YQLPAALPSLAPLLGPDTPVLF 98 (304) T ss_pred -----ccHHHHHHHHhhhcCCCCEEEE Confidence 2346788888888887766654 No 469 >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=81.45 E-value=13 Score=32.59 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=57.2 Q ss_pred CEEEEECCCch--HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHH-------cCCC-----CCeEEEEcccCCCCCCCC Q 024096 36 QEVLDIGCGWG--TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVRE-------AGLQ-----DHIRFYLCDYRQLPKANK 101 (272) Q Consensus 36 ~~vLDiG~G~G--~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~-------~g~~-----~~i~~~~~d~~~~~~~~~ 101 (272) .+|-=||+|+= +++..++. .|.+|+..|.+++..+.++..+.. .++. .++.+. .|+.+ .-.. T Consensus 8 ~~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~--av~~ 83 (321) T PRK07066 8 KTFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA--CVAD 83 (321) T ss_pred CEEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH--HhcC Confidence 57889999953 34455555 489999999999888776654431 2211 122221 12111 1145 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) .|+|+-. +.+.+ +-...+++++.+.++|+..|. T Consensus 84 aDlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIla 116 (321) T PRK07066 84 ADFIQES-APERE--ALKLELHERISRAAKPDAIIA 116 (321) T ss_pred CCEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEE Confidence 6777753 23333 234688999999999987444 No 470 >PLN02702 L-idonate 5-dehydrogenase Probab=81.40 E-value=12 Score=32.84 Aligned_cols=100 Identities=18% Similarity=0.314 Sum_probs=60.1 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHccCC-EEEEEcCCHHHHHHHHHHHHHcCCCCCeEEE--EcccCC----C--C Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQTGC-KYTGITLSEEQLKYAEIKVREAGLQDHIRFY--LCDYRQ----L--P 97 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~--~~d~~~----~--~ 97 (272) ....+.++.+||-+|+| .|..+..+++..++ .+++++.++...+.+++. |....+.+. ..+..+ + . T Consensus 175 ~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~ 250 (364) T PLN02702 175 RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQL----GADEIVLVSTNIEDVESEVEEIQKA 250 (364) T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CCCEEEecCcccccHHHHHHHHhhh Confidence 45567788899999875 45566777777665 488899887766655542 432111110 011111 1 1 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ....+|+|+.. .+. ...+....+.|+++|+++.. T Consensus 251 ~~~~~d~vid~-----~g~---~~~~~~~~~~l~~~G~~v~~ 284 (364) T PLN02702 251 MGGGIDVSFDC-----VGF---NKTMSTALEATRAGGKVCLV 284 (364) T ss_pred cCCCCCEEEEC-----CCC---HHHHHHHHHHHhcCCEEEEE Confidence 12468888763 221 23567778889999998753 No 471 >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=81.32 E-value=18 Score=30.89 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=56.6 Q ss_pred CEEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc--------CCC---------CCeEEEEcccCCC Q 024096 36 QEVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA--------GLQ---------DHIRFYLCDYRQL 96 (272) Q Consensus 36 ~~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~--------g~~---------~~i~~~~~d~~~~ 96 (272) .+|.=||+|.-+ ++..+++ .+.+|+.+|.+++.++.+++.+... .+. .++.+ ..|..+. T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a 81 (287) T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA 81 (287) T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH Confidence 478889999544 3344444 4789999999999888887654211 110 12222 2232221 Q ss_pred CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 97 PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 97 ~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) -...|+|+..-. +.. +....+++++...++++-.+.. T Consensus 82 --~~~aDlVieavp-e~~--~~k~~~~~~l~~~~~~~~ii~s 118 (287) T PRK08293 82 --VKDADLVIEAVP-EDP--EIKGDFYEELAKVAPEKTIFAT 118 (287) T ss_pred --hcCCCEEEEecc-CCH--HHHHHHHHHHHhhCCCCCEEEE Confidence 245688886422 111 2346788888888877765543 No 472 >PRK06139 short chain dehydrogenase; Provisional Probab=80.89 E-value=18 Score=31.67 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=50.3 Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272) Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272) .+.+||=.|++.|. ++..+++ .+.+|+.++.++...+...+.++..+ .++.++..|+.+.. .. T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~-~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330) T PRK06139 6 HGAVVVITGASSGIGQATAEAFAR-RGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG 82 (330) T ss_pred CCCEEEEcCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc Confidence 45688888875442 3334444 48899999998887776666665544 36778888987643 12 Q ss_pred CCccEEEEech Q 024096 100 NKYDRIISCGM 110 (272) Q Consensus 100 ~~fD~V~~~~~ 110 (272) +.+|+++.+.. T Consensus 83 g~iD~lVnnAG 93 (330) T PRK06139 83 GRIDVWVNNVG 93 (330) T ss_pred CCCCEEEECCC Confidence 56899988764 No 473 >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Probab=80.59 E-value=36 Score=29.19 Aligned_cols=94 Identities=27% Similarity=0.444 Sum_probs=59.4 Q ss_pred HcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC------CCC Q 024096 29 KARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP------KAN 100 (272) Q Consensus 29 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~------~~~ 100 (272) ...+.++.+||=.|+ +.|..+..+++..+.+++.++.++...+.+++ .|.. .+...+-.... .+. T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~~~~~ 206 (329) T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKS----LGCD---RPINYKTEDLGEVLKKEYPK 206 (329) T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHH----cCCc---eEEeCCCccHHHHHHHhcCC Confidence 345678899998884 46777778888778899999888876666543 2321 12221111110 124 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .+|+|+.. .+ ...+....+.|+++|+++. T Consensus 207 ~vd~v~~~-----~g----~~~~~~~~~~l~~~g~~v~ 235 (329) T cd08250 207 GVDVVYES-----VG----GEMFDTCVDNLALKGRLIV 235 (329) T ss_pred CCeEEEEC-----Cc----HHHHHHHHHHhccCCeEEE Confidence 58888753 22 2456667788899999875 No 474 >PRK07454 short chain dehydrogenase; Provisional Probab=80.54 E-value=16 Score=29.84 Aligned_cols=75 Identities=15% Similarity=0.117 Sum_probs=48.8 Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCC-----------C Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPK-----------A 99 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~-----------~ 99 (272) .+.++|-.|+ +|.++..+++. .+.+|++++.++...+...+.+...+ .++.++.+|+.+... - T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241) T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241) T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc Confidence 4567888885 45554444443 47899999998876655555444332 468889999876540 1 Q ss_pred CCccEEEEechh Q 024096 100 NKYDRIISCGMI 111 (272) Q Consensus 100 ~~fD~V~~~~~~ 111 (272) .+.|.++.+... T Consensus 82 ~~id~lv~~ag~ 93 (241) T PRK07454 82 GCPDVLINNAGM 93 (241) T ss_pred CCCCEEEECCCc Confidence 357888876543 No 475 >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, Probab=80.41 E-value=29 Score=30.10 Aligned_cols=102 Identities=22% Similarity=0.154 Sum_probs=51.7 Q ss_pred HcCCCCCCEEEEECCCc-hHHHHHHHHc-cCCEEEEEcCCHHHH-HHHHHHHHHcCCCCCeEEEEcccCCCC-CCCCccE Q 024096 29 KARVSKGQEVLDIGCGW-GTLAIEIVKQ-TGCKYTGITLSEEQL-KYAEIKVREAGLQDHIRFYLCDYRQLP-KANKYDR 104 (272) Q Consensus 29 ~l~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~gvd~s~~~~-~~a~~~~~~~g~~~~i~~~~~d~~~~~-~~~~fD~ 104 (272) .++..++.+|+-+|+|. |......... ...+++.++.++... +.+++ .|. .... ..++. .-...|+ T Consensus 172 ~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----~g~----~~~~--~~~~~~~l~~aDv 241 (311) T cd05213 172 IFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----LGG----NAVP--LDELLELLNEADV 241 (311) T ss_pred HhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----cCC----eEEe--HHHHHHHHhcCCE Confidence 33334688999999974 3333332322 336899999987644 33333 221 2222 11222 1245799 Q ss_pred EEEechhhccChhhHHHHHHHHHhcCccCcEEEEEeecCCCC Q 024096 105 IISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQFISAPDQ 146 (272) Q Consensus 105 V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 146 (272) |++.-.-.+. ...++......+.++.+++ +...|.+ T Consensus 242 Vi~at~~~~~-----~~~~~~~~~~~~~~~~~vi-DlavPrd 277 (311) T cd05213 242 VISATGAPHY-----AKIVERAMKKRSGKPRLIV-DLAVPRD 277 (311) T ss_pred EEECCCCCch-----HHHHHHHHhhCCCCCeEEE-EeCCCCC Confidence 9987554432 2333333332222455554 5655544 No 476 >PRK13771 putative alcohol dehydrogenase; Provisional Probab=80.32 E-value=15 Score=31.61 Aligned_cols=97 Identities=26% Similarity=0.328 Sum_probs=61.0 Q ss_pred HHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEE Q 024096 28 EKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRI 105 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V 105 (272) ..+.+.++.+||=.|+ +.|..+..+++..+.+++.++.+++..+.+++. ...-+..+ .+ ..++... ..+|++ T Consensus 156 ~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~v~~~---~~~d~~ 229 (334) T PRK13771 156 RRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGS-KF-SEEVKKI---GGADIV 229 (334) T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCch-hH-HHHHHhc---CCCcEE Confidence 3446778899999988 367788888888888999999988888777543 11111101 00 0011111 247888 Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +.. .+. ..+..+.+.|+++|+++.. T Consensus 230 ld~-----~g~----~~~~~~~~~l~~~G~~v~~ 254 (334) T PRK13771 230 IET-----VGT----PTLEESLRSLNMGGKIIQI 254 (334) T ss_pred EEc-----CCh----HHHHHHHHHHhcCCEEEEE Confidence 753 211 2356677778999998764 No 477 >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional Probab=80.21 E-value=33 Score=28.54 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=43.1 Q ss_pred CCCEEEEECCCc-hHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------C Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------K 98 (272) Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~ 98 (272) .+.++|-.|++. ++++..+++. .|++|+.++.+....+..++...... ..++.++.+|+.+.. . T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257) T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257) T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh Confidence 467899999752 4444444332 47888887654322222222222221 136788889987653 1 Q ss_pred CCCccEEEEech Q 024096 99 ANKYDRIISCGM 110 (272) Q Consensus 99 ~~~fD~V~~~~~ 110 (272) -+++|+++.+-. T Consensus 85 ~g~ld~lv~nag 96 (257) T PRK08594 85 VGVIHGVAHCIA 96 (257) T ss_pred CCCccEEEECcc Confidence 257898886543 No 478 >cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman Probab=80.21 E-value=5.7 Score=34.01 Aligned_cols=92 Identities=16% Similarity=0.180 Sum_probs=57.4 Q ss_pred CCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc---c----CCCCCCCC Q 024096 31 RVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD---Y----RQLPKANK 101 (272) Q Consensus 31 ~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d---~----~~~~~~~~ 101 (272) .+.++.+||=.|+ +.|..+..+++..+++++++..++...+.+++ .|.. .+.... . ........ T Consensus 135 ~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~~ 207 (323) T cd05282 135 KLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKA----LGAD---EVIDSSPEDLAQRVKEATGGAG 207 (323) T ss_pred cCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHh----cCCC---EEecccchhHHHHHHHHhcCCC Confidence 4568889998886 37778888888888999988888776665542 2431 111111 1 11112346 Q ss_pred ccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 102 YDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 102 fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) +|+|+... +.+ ......+.|+++|+++. T Consensus 208 ~d~vl~~~-----g~~----~~~~~~~~l~~~g~~v~ 235 (323) T cd05282 208 ARLALDAV-----GGE----SATRLARSLRPGGTLVN 235 (323) T ss_pred ceEEEECC-----CCH----HHHHHHHhhCCCCEEEE Confidence 89888532 211 23455678899999875 No 479 >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional Probab=80.18 E-value=17 Score=31.67 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=54.0 Q ss_pred EEEEECCCc-hH-HHHHHHHccCCEEEEEcCCHHHHHHHHHHH---H---HcCCCCCeEEEEcccCCCCCCCCccEEEEe Q 024096 37 EVLDIGCGW-GT-LAIEIVKQTGCKYTGITLSEEQLKYAEIKV---R---EAGLQDHIRFYLCDYRQLPKANKYDRIISC 108 (272) Q Consensus 37 ~vLDiG~G~-G~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~---~---~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~ 108 (272) +|.=+|+|. |. ++..|++. +.+|+.++.+++.++..++.- . ...++.++.+. .|..+. ..+.+|+|+.. T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~-~~~~~Dliiia 78 (326) T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEV-LSDNATCIILA 78 (326) T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHH-HhCCCCEEEEE Confidence 577889984 33 45555554 778999998887666555431 0 00011122221 121111 11467988874 Q ss_pred chhhccChhhHHHHHHHHHh-cCccCcEEEE Q 024096 109 GMIEHVGHDYMEEFFGCCES-LLATHGLLVL 138 (272) Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~-~LkpgG~l~i 138 (272) ++......+++++.. .++++..++. T Consensus 79 -----vks~~~~~~l~~l~~~~l~~~~~vv~ 104 (326) T PRK14620 79 -----VPTQQLRTICQQLQDCHLKKNTPILI 104 (326) T ss_pred -----eCHHHHHHHHHHHHHhcCCCCCEEEE Confidence 444556788888887 8888876654 No 480 >PRK07063 short chain dehydrogenase; Provisional Probab=79.98 E-value=15 Score=30.37 Aligned_cols=77 Identities=14% Similarity=0.129 Sum_probs=50.7 Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272) Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272) .+.++|-.|++.|. ++..+++ .|++|+.++.++...+...+.+...+...++.++.+|+.+.. .- T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~-~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260) T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAR-EGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260) T ss_pred CCCEEEEECCCchHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh Confidence 46789988876442 3334444 488999999988777666666554222346888999987653 01 Q ss_pred CCccEEEEechh Q 024096 100 NKYDRIISCGMI 111 (272) Q Consensus 100 ~~fD~V~~~~~~ 111 (272) +..|.++.+... T Consensus 85 g~id~li~~ag~ 96 (260) T PRK07063 85 GPLDVLVNNAGI 96 (260) T ss_pred CCCcEEEECCCc Confidence 468988876543 No 481 >PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional Probab=79.91 E-value=16 Score=31.65 Aligned_cols=97 Identities=18% Similarity=0.245 Sum_probs=60.6 Q ss_pred HHcCCCCCCEEEEECCC-chHHHHHHHHc-cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEccc-CC----CC-CC Q 024096 28 EKARVSKGQEVLDIGCG-WGTLAIEIVKQ-TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDY-RQ----LP-KA 99 (272) Q Consensus 28 ~~l~~~~~~~vLDiG~G-~G~~~~~l~~~-~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~-~~----~~-~~ 99 (272) ....+.++.+||=.|+| .|..+..+++. .+.++++++.+++..+.+++. |.. .++.... .+ +. .. T Consensus 156 ~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~v~~~~ 228 (338) T PRK09422 156 KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV----GAD---LTINSKRVEDVAKIIQEKT 228 (338) T ss_pred HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHc----CCc---EEecccccccHHHHHHHhc Confidence 45567889999999875 45666777776 488999999999888877542 331 1121110 11 10 11 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +.+|.++.. ... ...++.+.+.|+++|+++.. T Consensus 229 ~~~d~vi~~----~~~----~~~~~~~~~~l~~~G~~v~~ 260 (338) T PRK09422 229 GGAHAAVVT----AVA----KAAFNQAVDAVRAGGRVVAV 260 (338) T ss_pred CCCcEEEEe----CCC----HHHHHHHHHhccCCCEEEEE Confidence 246744432 111 34577788899999998863 No 482 >PLN02989 cinnamyl-alcohol dehydrogenase family protein Probab=79.65 E-value=10 Score=32.73 Aligned_cols=77 Identities=16% Similarity=0.191 Sum_probs=45.5 Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC----CCCCccEEE Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP----KANKYDRII 106 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~----~~~~fD~V~ 106 (272) .+.+||-.|+ +|.++..++++ .+.+|+++..++.............+...+++++.+|+.+.. .-...|.|+ T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325) T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325) T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE Confidence 4678888884 56666655554 477887776554433222222211222246889999988765 123579888 Q ss_pred Eechh Q 024096 107 SCGMI 111 (272) Q Consensus 107 ~~~~~ 111 (272) ..... T Consensus 83 h~A~~ 87 (325) T PLN02989 83 HTASP 87 (325) T ss_pred EeCCC Confidence 76643 No 483 >PRK08265 short chain dehydrogenase; Provisional Probab=79.46 E-value=35 Score=28.36 Aligned_cols=71 Identities=14% Similarity=0.226 Sum_probs=44.6 Q ss_pred CCCEEEEECCCchH---HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC Q 024096 34 KGQEVLDIGCGWGT---LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272) Q Consensus 34 ~~~~vLDiG~G~G~---~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272) .+.++|-.|++.|. ++..+++ .|.+|+.++.++...+...+.+ + .++.++.+|+.+.. .- T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~-~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261) T PRK08265 5 AGKVAIVTGGATLIGAAVARALVA-AGARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVARF 78 (261) T ss_pred CCCEEEEECCCChHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHHh Confidence 35688888865432 3334444 4889999998876444333222 2 36888999987653 01 Q ss_pred CCccEEEEech Q 024096 100 NKYDRIISCGM 110 (272) Q Consensus 100 ~~fD~V~~~~~ 110 (272) +..|.++.+.. T Consensus 79 g~id~lv~~ag 89 (261) T PRK08265 79 GRVDILVNLAC 89 (261) T ss_pred CCCCEEEECCC Confidence 46798887654 No 484 >PRK09291 short chain dehydrogenase; Provisional Probab=79.45 E-value=16 Score=30.06 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=46.9 Q ss_pred CEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----CCCCccEEEE Q 024096 36 QEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----KANKYDRIIS 107 (272) Q Consensus 36 ~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----~~~~fD~V~~ 107 (272) .+||-.|++. .++..+++. .+.+|++++-++...+...+.....+ .++.++.+|+.+.. .....|.|+. T Consensus 3 ~~vlVtGasg-~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257) T PRK09291 3 KTILITGAGS-GFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257) T ss_pred CEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEEE Confidence 4788888744 444434332 47899999888776655555544443 35888899987754 2247899888 Q ss_pred ech Q 024096 108 CGM 110 (272) Q Consensus 108 ~~~ 110 (272) +.. T Consensus 80 ~ag 82 (257) T PRK09291 80 NAG 82 (257) T ss_pred CCC Confidence 643 No 485 >TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model. Probab=79.40 E-value=18 Score=31.27 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=59.5 Q ss_pred HHcCCCC-----CCEEEEECC--CchHHHHHHHHcc-CCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE--cccCC-C Q 024096 28 EKARVSK-----GQEVLDIGC--GWGTLAIEIVKQT-GCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL--CDYRQ-L 96 (272) Q Consensus 28 ~~l~~~~-----~~~vLDiG~--G~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~--~d~~~-~ 96 (272) ....+.+ +.+||=.|+ +.|..+..+++.. +++++++..+++..+.+++ .|.. .++. .+... + T Consensus 137 ~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~----~g~~---~~~~~~~~~~~~i 209 (336) T TIGR02817 137 DRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLE----LGAH---HVIDHSKPLKAQL 209 (336) T ss_pred HhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHH----cCCC---EEEECCCCHHHHH Confidence 3444555 889998874 5777778888875 8999999888876666643 2431 2222 11100 0 Q ss_pred --CCCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 97 --PKANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 97 --~~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .....+|+|+.. ... ...+....+.|+++|+++. T Consensus 210 ~~~~~~~vd~vl~~-----~~~---~~~~~~~~~~l~~~G~~v~ 245 (336) T TIGR02817 210 EKLGLEAVSYVFSL-----THT---DQHFKEIVELLAPQGRFAL 245 (336) T ss_pred HHhcCCCCCEEEEc-----CCc---HHHHHHHHHHhccCCEEEE Confidence 022468888752 110 2456677888899999875 No 486 >PRK08213 gluconate 5-dehydrogenase; Provisional Probab=79.23 E-value=16 Score=30.33 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=51.1 Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272) .+.++|=.|+ +|.++..+++. .+.+|+.++.++...+.....+...+ .++.++.+|+.+.. .. T Consensus 11 ~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259) T PRK08213 11 SGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF 87 (259) T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh Confidence 4678999985 45555555543 47899999998877666665554433 36788999988743 11 Q ss_pred CCccEEEEechh Q 024096 100 NKYDRIISCGMI 111 (272) Q Consensus 100 ~~fD~V~~~~~~ 111 (272) ...|.|+.+... T Consensus 88 ~~id~vi~~ag~ 99 (259) T PRK08213 88 GHVDILVNNAGA 99 (259) T ss_pred CCCCEEEECCCC Confidence 468998887543 No 487 >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=79.21 E-value=19 Score=30.89 Aligned_cols=100 Identities=17% Similarity=0.232 Sum_probs=59.8 Q ss_pred CEEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHc-------CCC---------CCeEEEEcccCCCC Q 024096 36 QEVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREA-------GLQ---------DHIRFYLCDYRQLP 97 (272) Q Consensus 36 ~~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~-------g~~---------~~i~~~~~d~~~~~ 97 (272) .+|-=||+|+=+ ++..++. .|.+|+.+|.+++.++.+++++.+. |.- .+++ ...|...+ T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~-~~~~~~~~- 82 (286) T PRK07819 6 QRVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLR-FTTDLGDF- 82 (286) T ss_pred cEEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeE-eeCCHHHh- Confidence 378889999543 4455555 4899999999999998877664332 110 1121 12233221 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcC-ccCcEEEEEeecC Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLL-ATHGLLVLQFISA 143 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~i~~~~~ 143 (272) ...|+|+-. +.+.. +....++..+...+ +|+..+.-++... T Consensus 83 --~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snTS~~ 124 (286) T PRK07819 83 --ADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNTSSI 124 (286) T ss_pred --CCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECCCCC Confidence 456877754 23333 33467888888888 6776665433333 No 488 >PRK08324 short chain dehydrogenase; Validated Probab=78.80 E-value=22 Score=34.53 Aligned_cols=73 Identities=21% Similarity=0.177 Sum_probs=47.8 Q ss_pred CCCEEEEECCCch--H-HHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC Q 024096 34 KGQEVLDIGCGWG--T-LAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272) Q Consensus 34 ~~~~vLDiG~G~G--~-~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272) ++++||-.|++.| . ++..+++ .|.+|+.++.++...+.+.+.+... .++.++.+|+.+.. .. T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~-~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681) T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAA-EGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681) T ss_pred CCCEEEEecCCCHHHHHHHHHHHH-CcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc Confidence 5678998886433 2 2333343 4789999999987766555444322 36888999987643 02 Q ss_pred CCccEEEEech Q 024096 100 NKYDRIISCGM 110 (272) Q Consensus 100 ~~fD~V~~~~~ 110 (272) +.+|+|+.+.. T Consensus 497 g~iDvvI~~AG 507 (681) T PRK08324 497 GGVDIVVSNAG 507 (681) T ss_pred CCCCEEEECCC Confidence 36899988765 No 489 >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... Probab=78.74 E-value=1.8 Score=34.25 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=48.5 Q ss_pred CCCEEEEECCCc-hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCccEEEEechhh Q 024096 34 KGQEVLDIGCGW-GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYDRIISCGMIE 112 (272) Q Consensus 34 ~~~~vLDiG~G~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD~V~~~~~~~ 112 (272) .|.+|.=+|+|. |.-...+++..|.+|+++|.+......... . .+ ...++.++- ...|+|+..-.+. T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~----~----~~--~~~~l~ell--~~aDiv~~~~plt 102 (178) T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE----F----GV--EYVSLDELL--AQADIVSLHLPLT 102 (178) T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH----T----TE--EESSHHHHH--HH-SEEEE-SSSS T ss_pred CCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc----c----cc--eeeehhhhc--chhhhhhhhhccc Confidence 688999999873 433333444489999999998876552211 1 22 233444433 4578888765431 Q ss_pred ccChhhHHHHHHHHHhcCccCcEEE Q 024096 113 HVGHDYMEEFFGCCESLLATHGLLV 137 (272) Q Consensus 113 ~~~~~~~~~~l~~~~~~LkpgG~l~ 137 (272) - +...-+=++....||+|.+++ T Consensus 103 ~---~T~~li~~~~l~~mk~ga~lv 124 (178) T PF02826_consen 103 P---ETRGLINAEFLAKMKPGAVLV 124 (178) T ss_dssp T---TTTTSBSHHHHHTSTTTEEEE T ss_pred c---ccceeeeeeeeeccccceEEE Confidence 1 001112233456678887665 No 490 >PRK06124 gluconate 5-dehydrogenase; Provisional Probab=78.61 E-value=17 Score=30.00 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=48.9 Q ss_pred CCCEEEEECCCchHHHHHHHHc---cCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCC-----------CC Q 024096 34 KGQEVLDIGCGWGTLAIEIVKQ---TGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLP-----------KA 99 (272) Q Consensus 34 ~~~~vLDiG~G~G~~~~~l~~~---~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~-----------~~ 99 (272) ++.++|-.|++. .++..+++. .+.+|+.++.+++..+...+.++..+ .++.++.+|+.+.. .- T Consensus 10 ~~k~ilItGas~-~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256) T PRK06124 10 AGQVALVTGSAR-GLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH 86 (256) T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc Confidence 467899888644 444444332 48899999998876666555555443 36889999987643 11 Q ss_pred CCccEEEEech Q 024096 100 NKYDRIISCGM 110 (272) Q Consensus 100 ~~fD~V~~~~~ 110 (272) +++|.|+.+.. T Consensus 87 ~~id~vi~~ag 97 (256) T PRK06124 87 GRLDILVNNVG 97 (256) T ss_pred CCCCEEEECCC Confidence 46788887654 No 491 >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... Probab=78.46 E-value=7.4 Score=31.02 Aligned_cols=99 Identities=19% Similarity=0.296 Sum_probs=49.4 Q ss_pred CEEEEECCCchH--HHHHHHHccCCEEEEEcCCHHHHHHHHHH------------HHHcCCCCCeEEEEcccCCCCCCCC Q 024096 36 QEVLDIGCGWGT--LAIEIVKQTGCKYTGITLSEEQLKYAEIK------------VREAGLQDHIRFYLCDYRQLPKANK 101 (272) Q Consensus 36 ~~vLDiG~G~G~--~~~~l~~~~~~~v~gvd~s~~~~~~a~~~------------~~~~g~~~~i~~~~~d~~~~~~~~~ 101 (272) ++|-=+|.|.=+ ++..+++ .|.+|+|+|++++.++..++- +++..-..++.+. .|.... ... T Consensus 1 M~I~ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~a--i~~ 76 (185) T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE-KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEA--IKD 76 (185) T ss_dssp -EEEEE--STTHHHHHHHHHH-TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHH--HHH T ss_pred CEEEEECCCcchHHHHHHHHh-CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhh--hhc Confidence 356677888443 3344455 489999999999887766531 1111001133332 222221 134 Q ss_pred ccEEEEechhhccC-----hhhHHHHHHHHHhcCccCcEEEE Q 024096 102 YDRIISCGMIEHVG-----HDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 102 fD~V~~~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~l~i 138 (272) .|+++..-....-+ .......++.+...|+++-.+++ T Consensus 77 adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~ 118 (185) T PF03721_consen 77 ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVI 118 (185) T ss_dssp -SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEE T ss_pred cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEE Confidence 67776653322211 13357889999999999666665 No 492 >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH Probab=78.26 E-value=13 Score=31.87 Aligned_cols=89 Identities=20% Similarity=0.297 Sum_probs=56.2 Q ss_pred CCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEE-cc-----cCCCCCCCCccEE Q 024096 34 KGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYL-CD-----YRQLPKANKYDRI 105 (272) Q Consensus 34 ~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~-~d-----~~~~~~~~~fD~V 105 (272) ++.+||=.|+ +.|..+..+++..+.+++.++.+++..+.+++ .|.. .+.. .+ +... ....+|+| T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~~~-~~~~~d~v 217 (326) T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKK----LGAK---EVIPREELQEESIKPL-EKQRWAGA 217 (326) T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH----cCCC---EEEcchhHHHHHHHhh-ccCCcCEE Confidence 4678998886 36667777887778899999988877666643 2331 1111 11 1111 22458887 Q ss_pred EEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 106 ISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) +.. .+ ...+....+.|+++|+++.. T Consensus 218 ld~-----~g----~~~~~~~~~~l~~~G~~i~~ 242 (326) T cd08289 218 VDP-----VG----GKTLAYLLSTLQYGGSVAVS 242 (326) T ss_pred EEC-----Cc----HHHHHHHHHHhhcCCEEEEE Confidence 743 22 13456677888999999864 No 493 >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh Probab=78.20 E-value=13 Score=31.52 Aligned_cols=95 Identities=22% Similarity=0.195 Sum_probs=57.9 Q ss_pred HcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCC-------CCC Q 024096 29 KARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQL-------PKA 99 (272) Q Consensus 29 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~-------~~~ 99 (272) ...+.++.+||-.|+ +.|..+..+++..+.+++.++.++...+.+++ .+. ..+...+.... ... T Consensus 139 ~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~~~ 211 (328) T cd08268 139 LAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLA----LGA---AHVIVTDEEDLVAEVLRITGG 211 (328) T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----cCC---CEEEecCCccHHHHHHHHhCC Confidence 345667889998886 35556666666678899999988876666543 232 12222221111 122 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+|+++.... ......+.+.++++|+++.. T Consensus 212 ~~~d~vi~~~~---------~~~~~~~~~~l~~~g~~v~~ 242 (328) T cd08268 212 KGVDVVFDPVG---------GPQFAKLADALAPGGTLVVY 242 (328) T ss_pred CCceEEEECCc---------hHhHHHHHHhhccCCEEEEE Confidence 46888886422 12345566788999998864 No 494 >PRK06249 2-dehydropantoate 2-reductase; Provisional Probab=78.10 E-value=12 Score=32.47 Aligned_cols=92 Identities=16% Similarity=0.114 Sum_probs=50.4 Q ss_pred CCEEEEECCCc--hHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCC-----CCeEEEEcccCCCC-CCCCccEEE Q 024096 35 GQEVLDIGCGW--GTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQ-----DHIRFYLCDYRQLP-KANKYDRII 106 (272) Q Consensus 35 ~~~vLDiG~G~--G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~-----~~i~~~~~d~~~~~-~~~~fD~V~ 106 (272) .++|+=+|+|. |.++..|++. +.+|+.+.-++. +. +...|+. ....+........+ ....+|+|+ T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~~--~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313) T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSDY--EA----VRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313) T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCCH--HH----HHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEE Confidence 36899999983 3455666664 778887776542 21 2233321 11111101111111 235789998 Q ss_pred EechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 107 SCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) ..--... ..+.++.+...+++++.++. T Consensus 78 lavK~~~-----~~~~~~~l~~~~~~~~~iv~ 104 (313) T PRK06249 78 VGLKTTA-----NALLAPLIPQVAAPDAKVLL 104 (313) T ss_pred EEecCCC-----hHhHHHHHhhhcCCCCEEEE Confidence 7643333 25677777788888887654 No 495 >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts Probab=78.05 E-value=9.7 Score=32.29 Aligned_cols=94 Identities=20% Similarity=0.230 Sum_probs=56.5 Q ss_pred HcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccC-------CCCCC Q 024096 29 KARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYR-------QLPKA 99 (272) Q Consensus 29 ~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~-------~~~~~ 99 (272) ...+.++.+||=.|+ +.|..+..+++..+.+++.++.++...+.+.+ .+.. .+...... +.... T Consensus 139 ~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~ 211 (325) T cd08253 139 RAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVRQ----AGAD---AVFNYRAEDLADRILAATAG 211 (325) T ss_pred HhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCC---EEEeCCCcCHHHHHHHHcCC Confidence 356778899998885 35556566666678899999988877666643 2331 11111111 11123 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVL 138 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i 138 (272) ..+|+++... +. ..+....+.++++|.++. T Consensus 212 ~~~d~vi~~~-----~~----~~~~~~~~~l~~~g~~v~ 241 (325) T cd08253 212 QGVDVIIEVL-----AN----VNLAKDLDVLAPGGRIVV 241 (325) T ss_pred CceEEEEECC-----ch----HHHHHHHHhhCCCCEEEE Confidence 4689888642 11 123445677889998875 No 496 >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional Probab=77.88 E-value=44 Score=28.64 Aligned_cols=94 Identities=20% Similarity=0.236 Sum_probs=59.3 Q ss_pred cCCCCCCEEEEEC--CCchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCC-------CCCCC Q 024096 30 ARVSKGQEVLDIG--CGWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQ-------LPKAN 100 (272) Q Consensus 30 l~~~~~~~vLDiG--~G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~-------~~~~~ 100 (272) ..+.++.+||=.| .+.|..+..+++..|+++++++.++...+.+++ .|.. .++..+-.+ ..... T Consensus 136 ~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~~ 208 (327) T PRK10754 136 YEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKK----AGAW---QVINYREENIVERVKEITGGK 208 (327) T ss_pred cCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---EEEcCCCCcHHHHHHHHcCCC Confidence 4567888888875 346777788888888999999988887766643 2431 222222111 11234 Q ss_pred CccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 101 KYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 101 ~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) .+|+|+.. .+ ...+....+.++++|+++.. T Consensus 209 ~~d~vl~~-----~~----~~~~~~~~~~l~~~g~~v~~ 238 (327) T PRK10754 209 KVRVVYDS-----VG----KDTWEASLDCLQRRGLMVSF 238 (327) T ss_pred CeEEEEEC-----Cc----HHHHHHHHHHhccCCEEEEE Confidence 68888742 21 13455567788999999863 No 497 >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann Probab=77.82 E-value=28 Score=26.29 Aligned_cols=81 Identities=25% Similarity=0.301 Sum_probs=43.1 Q ss_pred HHHcCC-CCCCEEEEECCCch--HHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcccCCCCCCCCcc Q 024096 27 IEKARV-SKGQEVLDIGCGWG--TLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCDYRQLPKANKYD 103 (272) Q Consensus 27 ~~~l~~-~~~~~vLDiG~G~G--~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~fD 103 (272) +++... ..+.+|+-+|+|.= ..+..+++....+++.+|.++...+...+...... +.....|..+. .+..| T Consensus 10 ~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~D 83 (155) T cd01065 10 LEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG----IAIAYLDLEEL--LAEAD 83 (155) T ss_pred HHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc----cceeecchhhc--cccCC Confidence 334443 45689999999731 12223333223689999998876655444332210 11122232222 36789 Q ss_pred EEEEechhhc Q 024096 104 RIISCGMIEH 113 (272) Q Consensus 104 ~V~~~~~~~~ 113 (272) +|++.-.... T Consensus 84 vvi~~~~~~~ 93 (155) T cd01065 84 LIINTTPVGM 93 (155) T ss_pred EEEeCcCCCC Confidence 9998754443 No 498 >cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous Probab=77.81 E-value=17 Score=31.11 Aligned_cols=100 Identities=23% Similarity=0.301 Sum_probs=55.4 Q ss_pred HHHcCCCCCCEEEEECCC-chHHHHHHHHccCCEEEEEcC--CHHHHHHHHHHHHHcCCCCCeEEEEccc----CCCCCC Q 024096 27 IEKARVSKGQEVLDIGCG-WGTLAIEIVKQTGCKYTGITL--SEEQLKYAEIKVREAGLQDHIRFYLCDY----RQLPKA 99 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~G-~G~~~~~l~~~~~~~v~gvd~--s~~~~~~a~~~~~~~g~~~~i~~~~~d~----~~~~~~ 99 (272) .....+.++.+||-.|+| .|..+..+++..+.+++.+.. +....+.+++ .|.. .+.....+. ...... T Consensus 157 ~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~l~~~~~~ 231 (306) T cd08258 157 AERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKE----LGAD-AVNGGEEDLAELVNEITDG 231 (306) T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHH----hCCc-ccCCCcCCHHHHHHHHcCC Confidence 344456778888887654 455666677777888877633 3333333333 2331 111111111 111123 Q ss_pred CCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 100 NKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 100 ~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ..+|+++.. .+. ...+....+.|+++|+++.. T Consensus 232 ~~vd~vld~-----~g~---~~~~~~~~~~l~~~G~~v~~ 263 (306) T cd08258 232 DGADVVIEC-----SGA---VPALEQALELLRKGGRIVQV 263 (306) T ss_pred CCCCEEEEC-----CCC---hHHHHHHHHHhhcCCEEEEE Confidence 568998764 211 34667778889999998864 No 499 >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. Probab=77.78 E-value=29 Score=29.34 Aligned_cols=97 Identities=23% Similarity=0.269 Sum_probs=58.7 Q ss_pred HHHcCCCCCCEEEEECC--CchHHHHHHHHccCCEEEEEcCCHHHHHHHHHHHHHcCCCCCeEEEEcc---c----CCCC Q 024096 27 IEKARVSKGQEVLDIGC--GWGTLAIEIVKQTGCKYTGITLSEEQLKYAEIKVREAGLQDHIRFYLCD---Y----RQLP 97 (272) Q Consensus 27 ~~~l~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~g~~~~i~~~~~d---~----~~~~ 97 (272) .+...+.++.+||=.|. +.|.....+++..|++++.++.++...+.+++ .|.. .+.... . .... T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~ 204 (325) T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEA----LGAD---IAINYREEDFVEVVKAET 204 (325) T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCCc---EEEecCchhHHHHHHHHc Confidence 34455778889988875 45666666777678999999888877665532 2331 111111 1 0111 Q ss_pred CCCCccEEEEechhhccChhhHHHHHHHHHhcCccCcEEEEE Q 024096 98 KANKYDRIISCGMIEHVGHDYMEEFFGCCESLLATHGLLVLQ 139 (272) Q Consensus 98 ~~~~fD~V~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 139 (272) ....+|+++... + ...+..+.+.++++|.++.. T Consensus 205 ~~~~~d~~i~~~-----~----~~~~~~~~~~l~~~g~~v~~ 237 (325) T TIGR02824 205 GGKGVDVILDIV-----G----GSYLNRNIKALALDGRIVQI 237 (325) T ss_pred CCCCeEEEEECC-----c----hHHHHHHHHhhccCcEEEEE Confidence 224688888642 1 12455566788999998853 No 500 >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional Probab=77.78 E-value=11 Score=34.22 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=54.3 Q ss_pred CEEEEECCCchHHH--HHHHHccCCEEEEEcCCHHHHHHHHHH------------HH---HcCCCCCeEEEEcccCCCCC Q 024096 36 QEVLDIGCGWGTLA--IEIVKQTGCKYTGITLSEEQLKYAEIK------------VR---EAGLQDHIRFYLCDYRQLPK 98 (272) Q Consensus 36 ~~vLDiG~G~G~~~--~~l~~~~~~~v~gvd~s~~~~~~a~~~------------~~---~~g~~~~i~~~~~d~~~~~~ 98 (272) .+|-=||.|.-+.. ..|++. |.+|+++|.++..++..+.- +. ..| +..+.. + T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g---~l~~~~-~------ 72 (415) T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGG---YLRATT-T------ 72 (415) T ss_pred cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcC---ceeeec-c------ Confidence 46888899865443 444554 78999999999887753211 00 011 111110 1 Q ss_pred CCCccEEEEechhhc-----cChhhHHHHHHHHHhcCccCcEEEEEee Q 024096 99 ANKYDRIISCGMIEH-----VGHDYMEEFFGCCESLLATHGLLVLQFI 141 (272) Q Consensus 99 ~~~fD~V~~~~~~~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 141 (272) .+..|+|+..-.... ..-......++.+...|++|..+++... T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~ST 120 (415) T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILEST 120 (415) T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCC Confidence 135688877543320 0003446677888888988776665433 Done!