BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024097
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A
Cationdependent O-Methyltransferase From The
Cyanobacterium Synechocystis Sp. Strain Pcc 6803
Length = 232
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 140/212 (66%), Gaps = 1/212 (0%)
Query: 62 NKQVISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
K + P LY Y+ + + L QLR ETA + G+ MQ+SP+QAQ L +L+ + GA
Sbjct: 14 GKGITGFDPSLYSYLQSISADDSFYLAQLRRETAHLPGAPMQISPEQAQFLGLLISLTGA 73
Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
++ +E+GV+ GYS+LA+AL LP G ++AC++D + +AKKY+++AGV+ K+ ++ G A
Sbjct: 74 KQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA 133
Query: 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQM 240
+L+ L +D F+DA+KR Y Y+E+ L L+R GG++VIDNVLWHGKV +
Sbjct: 134 LATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVD 193
Query: 241 VNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
+A+T ++ FN++L +DERV IS+ + D
Sbjct: 194 PQEAQTQVLQQFNRDLAQDERVRISVIPLGDG 225
>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii
Length = 225
Score = 170 bits (431), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/207 (41%), Positives = 134/207 (64%), Gaps = 2/207 (0%)
Query: 68 VTPPLYDYILR-NVREPEILRQLREETA-GMRGSQMQVSPDQAQLLAMLVQILGAQRCIE 125
+TP LY Y+L+ ++REP +L +LREET Q +P+QAQLLA+LV++ A++ I+
Sbjct: 11 LTPELYQYLLQVSLREPPLLAELREETTRSFSTYAXQTAPEQAQLLALLVKLXQAKKVID 70
Query: 126 VGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185
+G +TGYS++A L LP+ G L+ C+ D +S +AK+Y+E+AG+S K+ ++ A D+L
Sbjct: 71 IGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLA 130
Query: 186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAK 245
LI G+A YD ++DA+K Y+E L+L+R GG+I +DNVL G+VAD+
Sbjct: 131 ELIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSEN 190
Query: 246 TISIRNFNKNLMEDERVSISMKEVQDA 272
IR FN+ + +DERV + + D
Sbjct: 191 NQLIRLFNQKVYKDERVDXILIPIGDG 217
>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
pdb|3R3H|B Chain B, Crystal Structure Of O-Methyltransferase From Legionella
Pneumophila
Length = 242
Score = 166 bits (421), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 130/208 (62%), Gaps = 1/208 (0%)
Query: 66 ISVTPPLYDYILR-NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCI 124
+S+TP LY Y+L ++RE L LR+ET+ M + MQV+P+QAQ + ML+++ A++ +
Sbjct: 6 LSLTPELYKYLLDISLREHPALAALRKETSTMELANMQVAPEQAQFMQMLIRLTRAKKVL 65
Query: 125 EVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184
E+G +TGYS+LA++L LP+ G ++ C+ + + A Y+ A HK+K++ G A D+L
Sbjct: 66 ELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL 125
Query: 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA 244
+L+ G +DF F+DA+K Y Y+EL L+L+ G+I IDN+ W GKV D
Sbjct: 126 HSLLNEGGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSG 185
Query: 245 KTISIRNFNKNLMEDERVSISMKEVQDA 272
+T I+ N+ + D RV +S+ + D
Sbjct: 186 QTREIKKLNQVIKNDSRVFVSLLAIADG 213
>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|B Chain B, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
pdb|2HNK|C Chain C, Crystal Structure Of Sam-dependent O-methyltransferase
From Pathogenic Bacterium Leptospira Interrogans
Length = 239
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/223 (39%), Positives = 138/223 (61%), Gaps = 12/223 (5%)
Query: 62 NKQVISVTPPLYDYILRN-VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGA 120
+++ IS+T L +YI RN VREP+ +LR+ET + + MQ+SP++ Q L +L +I GA
Sbjct: 2 SRKNISLTESLEEYIFRNSVREPDSFLKLRKETGTLAQANMQISPEEGQFLNILTKISGA 61
Query: 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180
+R IE+G +TGYSSL A LPE G ++ C+ VA+KY++ G+ +K+ +K G A
Sbjct: 62 KRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA 121
Query: 181 ADSLKALILNGEASSY--DFA---------FVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
++L+ LI + A S+ DFA F+DA+K Y Y+ L+L+L++ GG+++ DN
Sbjct: 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN 181
Query: 230 VLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
VLW G VAD + T+ IR FN+ + D V +S+ + D
Sbjct: 182 VLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPIADG 224
>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|B Chain B, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|C Chain C, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUI|D Chain D, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
pdb|1SUS|A Chain A, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|B Chain B, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|C Chain C, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
pdb|1SUS|D Chain D, Crystal Structure Of Alfalfa Feruoyl Coenzyme A 3-O-
Methyltransferase
Length = 247
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 83/213 (38%), Positives = 119/213 (55%), Gaps = 14/213 (6%)
Query: 72 LYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGV 128
LY YIL RE E +++LRE TA + M S D+ Q L+ML++++ A+ +E+GV
Sbjct: 29 LYQYILETSVFPREHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGV 88
Query: 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188
YTGYS LA AL +PE G ++A + + + E+ ++AGV HK+ + G A L +I
Sbjct: 89 YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI 148
Query: 189 LNGE-ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTI 247
+ + SYDF FVDA+K Y Y + L+ L++VGG+I DN LW+G V DA
Sbjct: 149 KDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVV--APPDAPLR 206
Query: 248 S----IRNF----NKNLMEDERVSISMKEVQDA 272
R+F NK L D R+ I M V D
Sbjct: 207 KYVRYYRDFVLELNKALAVDPRIEICMLPVGDG 239
>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
pdb|2AVD|B Chain B, Crystal Structure Of Human Catechol-O-Methyltransferase
Domain Containing 1
Length = 229
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 125/218 (57%), Gaps = 5/218 (2%)
Query: 60 YSNKQVISVTPP----LYDYIL-RNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAML 114
+ ++ + PP L+ Y+L R++RE LR LR T ++ +QAQLLA L
Sbjct: 5 WRGRREQCLLPPEDSRLWQYLLSRSMREHPALRSLRLLTLEQPQGDSMMTCEQAQLLANL 64
Query: 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174
+++ A++ +++G +TGYS+LA+AL LP G +V CE DA+ E+ + + +A HK+
Sbjct: 65 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKID 124
Query: 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234
++ A ++L L+ GEA ++D A VDA+K Y+E LQL+R GGI+ + VLW G
Sbjct: 125 LRLKPALETLDELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRG 184
Query: 235 KVADQMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272
KV D +RN N+ + D RV IS+ + D
Sbjct: 185 KVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPLGDG 222
>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid
O- Methyltransferase From M. Crystallinum
Length = 237
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 117/204 (57%), Gaps = 19/204 (9%)
Query: 75 YILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTG 131
YILR RE L++LRE S M SP QL++ +++++ A++ IEVGV+TG
Sbjct: 23 YILRTSVYPREAGFLKELREANESHPDSYMSTSPLAGQLMSFVLKLVNAKKTIEVGVFTG 82
Query: 132 YSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL--IL 189
YS L AL +P+ G + A + D + E+ + +AGV HK+ + +D++ AL +L
Sbjct: 83 YSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINF---IESDAMLALDNLL 139
Query: 190 NGEAS--SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVA-------DQM 240
G+ S SYDF FVDA+K Y +Y E L++L++VGGI+ DN LW G VA D M
Sbjct: 140 QGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFM 199
Query: 241 VNDAKTISIRNFNKNLMEDERVSI 264
+ + ++ NK L D R+ I
Sbjct: 200 KENRE--AVIELNKLLAADPRIEI 221
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 96/161 (59%), Gaps = 1/161 (0%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162
VSP Q + L +LVQI GA+ +E+G GYS++ +A L G +V E + ++A+
Sbjct: 42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS 101
Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222
ERA ++ +V+++ GLA DSL+ I N + +DF F+DA+K+ YFE L+L R G
Sbjct: 102 NIERANLNDRVEVRTGLALDSLQQ-IENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPG 160
Query: 223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVS 263
+I+ DNV+ G+V D ND + IR F + + + RVS
Sbjct: 161 TVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVS 201
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 91/163 (55%), Gaps = 3/163 (1%)
Query: 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162
V+ +Q Q LA+LV++ A+R +E+G GYS++ A LP G L+ E DA +VA++
Sbjct: 47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARE 106
Query: 163 YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222
+ AGV +V ++ G A SL++L GE ++D F+DA+K Y L+ R G
Sbjct: 107 NLQLAGVDQRVTLREGPALQSLESL---GECPAFDLIFIDADKPNNPHYLRWALRYSRPG 163
Query: 223 GIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS 265
+I+ DNV+ G+V + D + +R F + + R++ +
Sbjct: 164 TLIIGDNVVRDGEVVNPQSADERVQGVRQFIEXXGAEPRLTAT 206
>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
pdb|2GPY|B Chain B, Crystal Structure Of Putative O-methyltransferase From
Bacillus Halodurans
Length = 233
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS 170
L L++ R +E+G GYS++ A LPE+ +V+ ERD R E A K+ + G+
Sbjct: 46 LLHLLKXAAPARILEIGTAIGYSAIRXAQALPEA-TIVSIERDERRYEEAHKHVKALGLE 104
Query: 171 HKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230
++++ G A + L L +D F+DA K Y+ +F+ +R GG+I+ DNV
Sbjct: 105 SRIELLFGDALQLGEKLELY---PLFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNV 161
Query: 231 LWHGKVADQMVNDAK----TISIRNFNKNLMEDERVSISMKEVQDA 272
L+ G VA+ + + I +N+ L+E + + V D
Sbjct: 162 LFRGLVAETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDG 207
>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
pdb|3NTV|B Chain B, Crystal Structure Of A Putative Caffeoyl-Coa
O-Methyltransferase From Staphylococcus Aureus
Length = 232
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 5/129 (3%)
Query: 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV 169
L+ L++ + +E+G GYSS A + + + ER+ ++ AK+
Sbjct: 62 LIKQLIRXNNVKNILEIGTAIGYSSXQFASI-SDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 170 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229
++V+I G A + + N YD F+DA K +++FE+ L++ G+++ DN
Sbjct: 121 ENQVRIIEGNALEQFE----NVNDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITDN 176
Query: 230 VLWHGKVAD 238
VL+HG V+D
Sbjct: 177 VLYHGFVSD 185
>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex
pdb|1H1D|A Chain A, Catechol O-Methyltransferase
pdb|2CL5|A Chain A, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|2CL5|B Chain B, Catechol-O-Methyltransferase In Complex With An Inhibitor
pdb|1VID|A Chain A, Catechol O-Methyltransferase
pdb|3HVH|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Methyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVI|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Ethyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVJ|B Chain B, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, N6- Propyladenine-Containing Bisubstrate
Inhibitor
pdb|3HVK|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3NW9|A Chain A, Rat Comt In Complex With A Methylpurin-Containing
Bisubstrate Inhibitor
pdb|3NWB|A Chain A, Rat Comt In Complex With A Fluorinated
Desoxyribose-Containing Bisubstrate Inhibitor Avoids
Hydroxyl Group
pdb|3S68|A Chain A, Rat Comt In Complex With Sam And Tolcapone At 1.85a,
P3221, Rfree22.0
Length = 221
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 75 YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
Y+ +N + +P+ + + + + M V + Q++ +++ +E+G Y GY
Sbjct: 12 YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 71
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
S++ +A +L L+ E + + ++ AG+ KV I +G + D + L +
Sbjct: 72 SAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 131
Query: 193 ASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 234
+ D F+D K Y LL + L+R G +++ DNV+ G
Sbjct: 132 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 175
>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Purine-Containing Bisubstrate Inhibitor -
Humanized Form
pdb|3OE5|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Pyridylsulfanyl-Containing Inhibitor -
Humanized Form
pdb|3OZR|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Bisubstrate Inhibitor, No Substituent In
The Adenine Site - Humanized Form
pdb|3OZS|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, Trifluoromethyl-Imidazolyl-Containing
Inhibitor - Humanized Form
pdb|3OZT|A Chain A, Rat Catechol O-Methyltransferase In Complex With A
Catechol-Type, 4- Oxo-Pyridinyl-Containing Inhibitor -
Humanized Form
pdb|3NWE|A Chain A, Rat Comt In Complex With A Methylated Desoxyribose
Bisubstrate- Containing Inhibitor Avoids Hydroxyl Group
pdb|3R6T|A Chain A, Rat Catechol O-Methyltransferase In Complex With The
Bisubstrate Inhibitor
4'-Fluoro-4,5-Dihydroxy-Biphenyl-3-Carboxylic Acid
{(E)-3-
[(2s,4r,
5r)-4-Hydroxy-5-(6-Methyl-Purin-9-Yl)-Tetrahydro-Furan-
2-Yl]- Allyl}-Amide
pdb|3U81|A Chain A, Crystal Structure Of A Sah-Bound Semi-Holo Form Of Rat
Catechol-O- Methyltransferase
Length = 221
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 75 YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
Y+ +N + +P+ + + + + M V + Q++ +++ +E+G Y GY
Sbjct: 12 YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 71
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
S++ +A +L L+ E + + ++ AG+ KV I +G + D + L +
Sbjct: 72 SAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 131
Query: 193 ASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 234
+ D F+D K Y LL + L+R G +++ DNV+ G
Sbjct: 132 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 175
>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O-
Methyltransferase
pdb|2ZVJ|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With Coumarine-Based Inhibitor
pdb|2ZTH|A Chain A, Crystal Structure Of Holo Form Of Rat Catechol-O-
Methyltransferase
pdb|3A7D|A Chain A, Crystal Structures Of Rat Catechol-O-Methyltransferase
Complexed With New Bi-Substrate Type Inhibitor
Length = 223
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 75 YILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGY 132
Y+ +N + +P+ + + + + M V + Q++ +++ +E+G Y GY
Sbjct: 14 YVQQNAKPGDPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIREYSPSLVLELGAYCGY 73
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
S++ +A +L L+ E + + ++ AG+ KV I +G + D + L +
Sbjct: 74 SAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYD 133
Query: 193 ASSYDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHG 234
+ D F+D K Y LL + L+R G +++ DNV+ G
Sbjct: 134 VDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG 177
>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase
With Bound Sam And Dnc
Length = 214
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
M V + +++ ++Q +E+G Y GYS++ +A +L L+ E + +
Sbjct: 39 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--L 218
++ + AGV KV + G + D + L + + D F+D K Y LL + L
Sbjct: 99 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGL 158
Query: 219 IRVGGIIVIDNVLWHG 234
+R G +++ DNV+ G
Sbjct: 159 LRKGTVLLADNVICPG 174
>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And
3,5- Dinitrocatechol
Length = 216
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
M V + +++ ++Q +E+G Y GYS++ +A +L L+ E + +
Sbjct: 42 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 101
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--L 218
++ + AGV KV + G + D + L + + D F+D K Y LL + L
Sbjct: 102 QRMVDFAGVKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGL 161
Query: 219 IRVGGIIVIDNVLWHG 234
+R G +++ DNV+ G
Sbjct: 162 LRKGTVLLADNVICPG 177
>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O-
Methyltransferase Bound With S-Adenosylmethionine And
Inhibitor Dinitrocatechol
Length = 214
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
M V + +++ ++Q +E+G Y GYS++ +A +L L+ E + +
Sbjct: 39 MNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 98
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ--L 218
++ + AG+ KV + G + D + L + + D F+D K Y LL + L
Sbjct: 99 QRMVDFAGMKDKVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGL 158
Query: 219 IRVGGIIVIDNVLWHG 234
+R G +++ DNV+ G
Sbjct: 159 LRKGTVLLADNVICPG 174
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 107 QAQLLAMLVQILG---AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY 163
Q L+A+ ++ +G R +E+G TGY++ ++ V+ E G +V+ E + E+AK+
Sbjct: 60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN 119
Query: 164 YERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201
ER G+ + + + D + E S YD FV
Sbjct: 120 VERLGIENVIFV----CGDGYYGV---PEFSPYDVIFV 150
>pdb|3DR5|A Chain A, Crystal Structure Of The Q8nrd3_corgl Protein From
Corynebacterium Glutamicum. Northeast Structural
Genomics Consortium Target Cgr117
Length = 221
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 28/166 (16%)
Query: 104 SPDQ--AQLLAMLVQIL---GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE 158
+PD+ QLL L G+ I + G L I L ++ L + ++
Sbjct: 36 APDEXTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQR 95
Query: 159 VAKKYYERAG---------VSHKVKIKHGLAADSLKALILNGEASSYDF-AFVDAEKRMY 208
AK + AG +S + + LA DS + ++ G+ S D A VDA
Sbjct: 96 QAKALFREAGYSPSRVRFLLSRPLDVXSRLANDSYQ--LVFGQVSPXDLKALVDAA---- 149
Query: 209 QEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNK 254
L+R GG +V+ + L G +ADQ D T + R+ ++
Sbjct: 150 -------WPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADE 188
>pdb|2WZP|R Chain R, Structures Of Lactococcal Phage P2 Baseplate Shed Light On
A Novel Mechanism Of Host Attachment And Activation In
Siphoviridae
Length = 375
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 149 ACERDARSL---EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK 205
E D R+L A + + R ++ +V IK + D+ + E S+Y+FA V +
Sbjct: 195 PSETDPRNLLFINFASRNWNRKRITTRVDIKQSVTMDTETIV----ERSAYNFAVVFVKN 250
Query: 206 RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD-QMVNDAKTI 247
+ +Y + I VID +HG D V AKT+
Sbjct: 251 KATDDYTDPPKMYIAKNNGDVIDYSTYHGDGTDLPDVRTAKTL 293
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 12/137 (8%)
Query: 91 EETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVAC 150
+E + Q +P ++ + + +EVG +G+++ I+ ++ +
Sbjct: 63 DEPLPIPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTI 120
Query: 151 ERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQE 210
ER +E AK+ ERAG VK H + D K + YD V A +
Sbjct: 121 ERIPELVEFAKRNLERAG----VKNVHVILGDGSKGF---PPKAPYDVIIVTAGA---PK 170
Query: 211 YFELLLQLIRVGGIIVI 227
E L++ +++GG ++I
Sbjct: 171 IPEPLIEQLKIGGKLII 187
>pdb|2X54|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X54|0 Chain 0, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 1 Of 2)
pdb|2X5A|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
pdb|2X5A|0 Chain 0, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Ca (Part 2 Of 2)
Length = 372
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 149 ACERDARSL---EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK 205
E D R+L A + + R ++ +V IK + D+ + + S+Y+FA V +
Sbjct: 195 PSETDPRNLLFINFASRNWNRKRITTRVDIKQSVTMDTETIV----DRSAYNFAVVFVKN 250
Query: 206 RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD-QMVNDAKTI 247
+ +Y + I VID +HG D V AKT+
Sbjct: 251 KATDDYTDPPKMYIAKNNGDVIDYSTYHGDGTDLPDVRTAKTL 293
>pdb|2X53|Y Chain Y, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|Z Chain Z, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
pdb|2X53|1 Chain 1, Structure Of The Phage P2 Baseplate In Its Activated
Conformation With Sr
Length = 375
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 149 ACERDARSL---EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK 205
E D R+L A + + R ++ +V IK + D+ + + S+Y+FA V +
Sbjct: 195 PSETDPRNLLFINFASRNWNRKRITTRVDIKQSVTMDTETIV----DRSAYNFAVVFVKN 250
Query: 206 RMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD-QMVNDAKTI 247
+ +Y + I VID +HG D V AKT+
Sbjct: 251 KATDDYTDPPKMYIAKNNGDVIDYSTYHGDGTDLPDVRTAKTL 293
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
G + ++G TG ++ +++ + A + ++++E+A+K ER GVS + ++ G
Sbjct: 121 GIKTVADIG--TGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG 178
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
G + ++G TG ++ +++ + A + ++++E+A+K ER GVS + ++ G
Sbjct: 123 GIKTVADIG--TGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG 180
>pdb|2PWP|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
pdb|2PWP|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermidine
Length = 282
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 150 CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD------- 202
CE D +EV+K Y++ ++ K + D+ K L ++YD VD
Sbjct: 107 CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK--FLENVTNTYDVIIVDSSDPIGP 164
Query: 203 AEKRMYQEYFELLLQLIRVGGIIVID-NVLW-HGKVADQMVNDAKTI 247
AE Q ++E + ++ G V LW H M+ AK +
Sbjct: 165 AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL 211
>pdb|2PSS|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PSS|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Its Apo- Form
pdb|2PT6|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT6|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine
pdb|2PT9|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
pdb|2PT9|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With Decarboxylated S-Adenosylmethionine And
The Inhibitor Cis-4- Methylcyclohexylamine (4mcha)
Length = 321
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 150 CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD------- 202
CE D +EV+K Y++ ++ K + D+ K L ++YD VD
Sbjct: 146 CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK--FLENVTNTYDVIIVDSSDPIGP 203
Query: 203 AEKRMYQEYFELLLQLIRVGGIIVID-NVLW-HGKVADQMVNDAKTI 247
AE Q ++E + ++ G V LW H M+ AK +
Sbjct: 204 AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL 250
>pdb|2HTE|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2HTE|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With 5'-Methylthioadenosine
pdb|2I7C|A Chain A, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|B Chain B, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|2I7C|C Chain C, The Crystal Structure Of Spermidine Synthase From P.
Falciparum In Complex With Adodato
pdb|3B7P|A Chain A, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|B Chain B, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3B7P|C Chain C, Crystal Structure Of Spermidine Synthase From Plasmodium
Falciparum In Complex With Spermine
pdb|3RIE|A Chain A, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|B Chain B, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
pdb|3RIE|C Chain C, The Structure Of Plasmodium Falciparum Spermidine Synthase
In Complex With 5'-Methylthioadenosine And
N-(3-Aminopropyl)-Trans-Cyclohexane- 1,4-Diamine
Length = 283
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 150 CERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD------- 202
CE D +EV+K Y++ ++ K + D+ K L ++YD VD
Sbjct: 108 CEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASK--FLENVTNTYDVIIVDSSDPIGP 165
Query: 203 AEKRMYQEYFELLLQLIRVGGIIVID-NVLW-HGKVADQMVNDAKTI 247
AE Q ++E + ++ G V LW H M+ AK +
Sbjct: 166 AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL 212
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178
G + ++G TG ++ +++ + A + ++++E+A+K ER GVS + ++ G
Sbjct: 133 GIKTVADIG--TGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG 190
>pdb|2DDM|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDM|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.1 A Resolution
pdb|2DDO|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDO|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene At 2.6 A Resolution
pdb|2DDW|A Chain A, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
pdb|2DDW|B Chain B, Crystal Structure Of Pyridoxal Kinase From The Escherichia
Coli Pdxk Gene Complexed With Pyridoxal At 3.2 A
Resolution
Length = 283
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 77 LRNVREPEILRQLREETAGMRGSQMQVS----------PDQAQLLAMLVQILGAQRCIEV 126
LR ++E + LRQLR T G G+ Q+ D LL M+ ++G I+
Sbjct: 77 LRALQERDALRQLRAVTTGYMGTASQIKILAEWLTALRKDHPDLLIMVDPVIGD---IDS 133
Query: 127 GVY 129
G+Y
Sbjct: 134 GIY 136
>pdb|3G5K|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5K|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5K|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5K|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5P|A Chain A, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5P|B Chain B, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5P|C Chain C, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
pdb|3G5P|D Chain D, Structure And Activity Of Human Mitochondrial Peptide
Deformylase, A Novel Cancer Target
Length = 183
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Query: 74 DYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYT-GY 132
D +LR V P E A + G ++Q +L LVQ++ +RC+ + G
Sbjct: 12 DPVLRGVAAPV-------ERAQLGGPELQ------RLTQRLVQVMRRRRCVGLSAPQLGV 58
Query: 133 SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 175
+AL LPE+ C C R+L + + R V+ +++
Sbjct: 59 PRQVLALELPEALCR-ECPPRQRALRQMEPFPLRVFVNPSLRV 100
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 105 PDQAQLLAMLVQIL----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVA 160
PD L+ ++ L R I+VG +G +++IAL P + A + +L VA
Sbjct: 12 PDTEVLVEEAIRFLKRXPSGTRVIDVGTGSGCIAVSIALACPGV-SVTAVDLSXDALAVA 70
Query: 161 KKYYERAGVSHKVKIKHGLAADSLKALILNGE 192
++ ER G + AAD ++ LI E
Sbjct: 71 RRNAERFGA-----VVDWAAADGIEWLIERAE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,878,531
Number of Sequences: 62578
Number of extensions: 250222
Number of successful extensions: 723
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 34
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)