Query 024097
Match_columns 272
No_of_seqs 403 out of 2934
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:57:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02476 O-methyltransferase 100.0 1.5E-43 3.3E-48 304.5 26.8 269 1-272 1-271 (278)
2 PF01596 Methyltransf_3: O-met 100.0 2.3E-39 5.1E-44 268.9 21.0 193 80-272 5-198 (205)
3 KOG1663 O-methyltransferase [S 100.0 1E-37 2.3E-42 255.6 22.5 213 60-272 9-230 (237)
4 PLN02589 caffeoyl-CoA O-methyl 100.0 6.2E-37 1.4E-41 260.7 25.5 206 67-272 24-239 (247)
5 COG4122 Predicted O-methyltran 100.0 3.8E-36 8.1E-41 249.5 22.8 201 66-272 6-211 (219)
6 PLN02781 Probable caffeoyl-CoA 100.0 1E-35 2.2E-40 253.2 25.9 205 68-272 12-226 (234)
7 PF12847 Methyltransf_18: Meth 99.8 3.6E-18 7.9E-23 128.7 10.4 104 119-229 1-111 (112)
8 COG2226 UbiE Methylase involve 99.7 9.5E-17 2.1E-21 135.5 11.8 118 108-233 40-160 (238)
9 COG2242 CobL Precorrin-6B meth 99.7 8.1E-16 1.8E-20 123.7 16.3 120 103-231 18-137 (187)
10 PRK00377 cbiT cobalt-precorrin 99.7 6.5E-16 1.4E-20 128.5 15.5 113 113-230 34-146 (198)
11 TIGR02469 CbiT precorrin-6Y C5 99.7 5E-16 1.1E-20 118.7 13.7 111 111-228 11-121 (124)
12 PF01209 Ubie_methyltran: ubiE 99.7 1.3E-16 2.7E-21 135.7 10.8 116 111-233 39-157 (233)
13 PRK04457 spermidine synthase; 99.7 1.7E-15 3.7E-20 131.1 17.0 118 105-228 52-176 (262)
14 TIGR00080 pimt protein-L-isoas 99.7 4.8E-16 1E-20 130.9 13.2 151 68-228 21-176 (215)
15 PRK08287 cobalt-precorrin-6Y C 99.7 2.4E-15 5.1E-20 124.0 16.7 118 103-230 15-132 (187)
16 TIGR00138 gidB 16S rRNA methyl 99.7 1.6E-15 3.5E-20 124.2 15.3 102 117-228 40-141 (181)
17 PRK13944 protein-L-isoaspartat 99.7 6.4E-16 1.4E-20 129.2 13.2 118 104-230 57-174 (205)
18 PRK13942 protein-L-isoaspartat 99.7 8.5E-16 1.8E-20 129.1 13.5 118 101-228 58-175 (212)
19 PRK00107 gidB 16S rRNA methylt 99.7 1.9E-15 4.1E-20 124.2 13.6 101 119-229 45-145 (187)
20 PF13847 Methyltransf_31: Meth 99.7 8.9E-16 1.9E-20 122.3 10.9 109 118-232 2-113 (152)
21 PLN03075 nicotianamine synthas 99.7 1.3E-15 2.9E-20 132.3 12.4 119 104-229 109-233 (296)
22 PF05175 MTS: Methyltransferas 99.6 2.3E-15 5E-20 122.2 11.9 112 107-227 19-138 (170)
23 COG2519 GCD14 tRNA(1-methylade 99.6 2.4E-15 5.3E-20 126.1 12.2 119 102-229 77-195 (256)
24 PRK07402 precorrin-6B methylas 99.6 8.9E-15 1.9E-19 121.4 15.3 121 102-230 23-143 (196)
25 COG2230 Cfa Cyclopropane fatty 99.6 3.7E-15 7.9E-20 128.2 12.9 114 110-234 63-181 (283)
26 PRK00121 trmB tRNA (guanine-N( 99.6 3.8E-15 8.2E-20 124.2 11.6 120 102-228 25-155 (202)
27 PRK11036 putative S-adenosyl-L 99.6 6.2E-15 1.4E-19 127.3 13.2 103 118-228 43-148 (255)
28 PLN02233 ubiquinone biosynthes 99.6 5.5E-15 1.2E-19 128.0 12.9 115 112-232 66-185 (261)
29 PF02353 CMAS: Mycolic acid cy 99.6 2.9E-15 6.2E-20 130.1 11.1 114 111-235 54-172 (273)
30 TIGR02752 MenG_heptapren 2-hep 99.6 9.9E-15 2.1E-19 124.1 13.6 115 109-230 35-152 (231)
31 COG2518 Pcm Protein-L-isoaspar 99.6 7E-15 1.5E-19 120.8 11.0 117 99-228 52-168 (209)
32 PF08704 GCD14: tRNA methyltra 99.6 2.6E-14 5.6E-19 121.7 13.9 122 102-228 23-145 (247)
33 PF01135 PCMT: Protein-L-isoas 99.6 1E-14 2.2E-19 121.7 10.5 117 102-228 55-171 (209)
34 PF13659 Methyltransf_26: Meth 99.6 1.5E-14 3.3E-19 109.7 10.5 102 120-227 1-113 (117)
35 PLN02244 tocopherol O-methyltr 99.6 2.1E-14 4.5E-19 129.0 12.8 106 118-231 117-225 (340)
36 COG4123 Predicted O-methyltran 99.6 2E-14 4.3E-19 121.5 11.7 116 107-227 32-168 (248)
37 TIGR03533 L3_gln_methyl protei 99.6 4.4E-14 9.5E-19 123.7 14.3 118 103-228 101-250 (284)
38 PRK00811 spermidine synthase; 99.6 1.2E-13 2.5E-18 121.0 16.1 105 118-228 75-190 (283)
39 PRK00312 pcm protein-L-isoaspa 99.6 4.1E-14 8.9E-19 118.9 12.7 114 102-228 61-174 (212)
40 PRK15451 tRNA cmo(5)U34 methyl 99.6 5E-14 1.1E-18 121.1 13.3 106 118-231 55-166 (247)
41 TIGR00091 tRNA (guanine-N(7)-) 99.6 5.9E-14 1.3E-18 116.3 13.0 105 119-228 16-131 (194)
42 COG2227 UbiG 2-polyprenyl-3-me 99.6 2.1E-14 4.6E-19 119.6 10.3 121 102-233 39-165 (243)
43 PRK11805 N5-glutamine S-adenos 99.6 7.1E-14 1.5E-18 123.6 13.9 118 103-228 113-262 (307)
44 PLN02396 hexaprenyldihydroxybe 99.6 3.8E-14 8.3E-19 125.7 11.8 104 119-231 131-237 (322)
45 TIGR00740 methyltransferase, p 99.5 1.2E-13 2.6E-18 118.2 14.0 106 119-232 53-164 (239)
46 PRK11207 tellurite resistance 99.5 5.9E-14 1.3E-18 116.6 11.3 100 117-227 28-132 (197)
47 PRK11873 arsM arsenite S-adeno 99.5 6.1E-14 1.3E-18 122.2 11.8 112 116-234 74-188 (272)
48 PRK14902 16S rRNA methyltransf 99.5 1.1E-13 2.3E-18 128.8 14.1 125 102-232 233-382 (444)
49 smart00828 PKS_MT Methyltransf 99.5 4E-14 8.7E-19 119.8 10.2 103 121-231 1-106 (224)
50 PRK14901 16S rRNA methyltransf 99.5 1.8E-13 4E-18 126.7 15.2 125 105-232 238-387 (434)
51 PRK14903 16S rRNA methyltransf 99.5 3.1E-13 6.8E-18 124.8 16.3 125 102-232 220-369 (431)
52 PF13649 Methyltransf_25: Meth 99.5 5.2E-14 1.1E-18 104.2 9.1 93 123-223 1-101 (101)
53 PRK15001 SAM-dependent 23S rib 99.5 1.2E-13 2.5E-18 124.8 13.0 112 109-228 218-339 (378)
54 TIGR00477 tehB tellurite resis 99.5 1E-13 2.2E-18 115.0 11.6 103 114-228 25-132 (195)
55 PRK14103 trans-aconitate 2-met 99.5 7.2E-14 1.6E-18 120.7 10.7 97 116-228 26-125 (255)
56 PRK04266 fibrillarin; Provisio 99.5 5.3E-13 1.1E-17 112.9 15.6 109 115-233 68-179 (226)
57 PRK01683 trans-aconitate 2-met 99.5 1.2E-13 2.6E-18 119.4 11.6 99 116-228 28-129 (258)
58 PF08241 Methyltransf_11: Meth 99.5 3.4E-14 7.4E-19 103.1 6.9 92 124-227 1-95 (95)
59 PRK01581 speE spermidine synth 99.5 4.5E-13 9.8E-18 119.1 14.8 106 117-228 148-267 (374)
60 TIGR00536 hemK_fam HemK family 99.5 3.5E-13 7.5E-18 118.2 13.8 118 104-229 95-244 (284)
61 TIGR00537 hemK_rel_arch HemK-r 99.5 7E-13 1.5E-17 108.5 14.7 108 109-229 9-140 (179)
62 PRK10909 rsmD 16S rRNA m(2)G96 99.5 1.2E-12 2.7E-17 108.4 16.0 120 102-229 36-159 (199)
63 PRK08317 hypothetical protein; 99.5 7E-13 1.5E-17 112.6 14.6 118 111-236 11-131 (241)
64 PRK13943 protein-L-isoaspartat 99.5 4.1E-13 8.9E-18 119.0 13.4 116 103-228 64-179 (322)
65 TIGR00406 prmA ribosomal prote 99.5 5E-13 1.1E-17 117.4 13.4 104 118-231 158-261 (288)
66 PRK14904 16S rRNA methyltransf 99.5 5E-13 1.1E-17 124.2 13.8 123 102-232 233-380 (445)
67 PTZ00098 phosphoethanolamine N 99.5 3E-13 6.5E-18 117.3 11.6 109 114-233 47-160 (263)
68 TIGR00417 speE spermidine synt 99.5 1.6E-12 3.4E-17 113.2 16.0 105 118-228 71-185 (270)
69 TIGR02716 C20_methyl_CrtF C-20 99.5 3.7E-13 8E-18 119.3 12.2 116 109-234 139-259 (306)
70 PRK15068 tRNA mo(5)U34 methylt 99.5 4.5E-13 9.8E-18 119.3 12.8 113 114-235 117-232 (322)
71 TIGR00446 nop2p NOL1/NOP2/sun 99.5 7.3E-13 1.6E-17 114.9 13.7 120 105-231 57-201 (264)
72 PRK15128 23S rRNA m(5)C1962 me 99.5 2E-12 4.3E-17 117.9 17.0 109 117-229 218-339 (396)
73 PLN02366 spermidine synthase 99.5 2E-12 4.3E-17 114.1 16.4 107 117-228 89-205 (308)
74 PRK10901 16S rRNA methyltransf 99.5 1.8E-12 3.9E-17 119.9 16.0 122 103-231 228-374 (427)
75 PRK14968 putative methyltransf 99.5 1.6E-12 3.5E-17 106.7 13.8 110 109-228 13-147 (188)
76 COG4106 Tam Trans-aconitate me 99.5 1.3E-13 2.8E-18 112.6 7.0 101 114-228 25-128 (257)
77 PRK06922 hypothetical protein; 99.5 1.9E-12 4.1E-17 122.5 15.6 112 113-231 412-539 (677)
78 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.5E-12 3.2E-17 117.3 14.2 104 118-227 121-233 (390)
79 PF13578 Methyltransf_24: Meth 99.5 9.3E-14 2E-18 103.8 5.4 102 124-230 1-106 (106)
80 PRK00517 prmA ribosomal protei 99.4 1.3E-12 2.7E-17 112.6 12.9 109 107-231 106-215 (250)
81 TIGR03534 RF_mod_PrmC protein- 99.4 2E-12 4.4E-17 111.0 14.1 115 105-228 71-216 (251)
82 PRK01544 bifunctional N5-gluta 99.4 1E-12 2.3E-17 123.6 13.2 101 120-228 139-268 (506)
83 TIGR00563 rsmB ribosomal RNA s 99.4 9.9E-13 2.1E-17 121.6 12.7 125 104-233 223-372 (426)
84 PRK12335 tellurite resistance 99.4 1E-12 2.2E-17 115.4 12.1 98 118-227 119-221 (287)
85 PRK09489 rsmC 16S ribosomal RN 99.4 1.3E-12 2.8E-17 117.1 12.6 99 118-227 195-301 (342)
86 TIGR00452 methyltransferase, p 99.4 1.4E-12 3E-17 115.3 12.4 110 117-235 119-231 (314)
87 COG2264 PrmA Ribosomal protein 99.4 1.2E-12 2.5E-17 113.7 11.6 104 119-231 162-265 (300)
88 PRK11783 rlmL 23S rRNA m(2)G24 99.4 2.3E-12 5.1E-17 125.7 15.0 109 115-230 534-657 (702)
89 PRK00216 ubiE ubiquinone/menaq 99.4 2E-12 4.3E-17 110.0 12.6 110 116-231 48-160 (239)
90 COG1092 Predicted SAM-dependen 99.4 5E-12 1.1E-16 114.2 15.5 115 114-233 212-340 (393)
91 TIGR03587 Pse_Me-ase pseudamin 99.4 2.7E-12 5.8E-17 107.1 12.8 104 117-236 41-149 (204)
92 PLN02336 phosphoethanolamine N 99.4 1.5E-12 3.2E-17 122.2 12.4 108 116-233 263-373 (475)
93 PF08242 Methyltransf_12: Meth 99.4 5.1E-14 1.1E-18 103.8 1.5 96 124-225 1-99 (99)
94 PRK14967 putative methyltransf 99.4 6E-12 1.3E-16 106.6 13.9 100 118-228 35-158 (223)
95 TIGR01177 conserved hypothetic 99.4 3.6E-12 7.8E-17 114.1 13.0 117 102-228 165-293 (329)
96 TIGR00095 RNA methyltransferas 99.4 1.8E-11 3.9E-16 100.9 16.2 118 109-230 39-160 (189)
97 PRK10258 biotin biosynthesis p 99.4 2E-12 4.3E-17 111.3 10.6 111 106-231 29-142 (251)
98 KOG1270 Methyltransferases [Co 99.4 5.1E-13 1.1E-17 112.2 6.6 102 120-233 90-199 (282)
99 PRK14966 unknown domain/N5-glu 99.4 5.5E-12 1.2E-16 114.3 13.8 119 102-228 233-380 (423)
100 PF05401 NodS: Nodulation prot 99.4 1.6E-12 3.5E-17 105.6 9.1 102 116-230 40-147 (201)
101 COG2890 HemK Methylase of poly 99.4 3.5E-12 7.7E-17 111.3 11.8 117 102-228 91-237 (280)
102 TIGR02072 BioC biotin biosynth 99.4 3.9E-12 8.4E-17 108.1 11.9 102 119-232 34-138 (240)
103 PF03848 TehB: Tellurite resis 99.4 4.1E-12 8.9E-17 104.1 11.3 104 115-230 26-134 (192)
104 TIGR03704 PrmC_rel_meth putati 99.4 7.8E-12 1.7E-16 107.6 13.5 100 120-228 87-215 (251)
105 PRK11705 cyclopropane fatty ac 99.4 5.2E-12 1.1E-16 115.0 13.0 104 115-233 163-271 (383)
106 PRK09328 N5-glutamine S-adenos 99.4 8.1E-12 1.8E-16 108.9 13.4 115 105-228 91-237 (275)
107 PF06325 PrmA: Ribosomal prote 99.4 2.8E-12 6E-17 112.2 10.4 114 106-231 147-261 (295)
108 COG2813 RsmC 16S RNA G1207 met 99.4 5E-12 1.1E-16 109.2 11.6 109 109-227 148-264 (300)
109 PF03602 Cons_hypoth95: Conser 99.4 1.5E-11 3.2E-16 100.8 13.9 127 99-229 21-153 (183)
110 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 8.7E-12 1.9E-16 104.9 12.6 106 117-231 37-145 (223)
111 KOG1540 Ubiquinone biosynthesi 99.4 5.3E-12 1.1E-16 105.7 10.9 109 113-227 94-212 (296)
112 PLN02823 spermine synthase 99.4 2.3E-11 4.9E-16 108.5 15.1 105 118-228 102-219 (336)
113 PLN02490 MPBQ/MSBQ methyltrans 99.4 6.2E-12 1.4E-16 112.1 11.2 100 119-229 113-215 (340)
114 PRK05134 bifunctional 3-demeth 99.3 1.9E-11 4.2E-16 104.0 13.6 118 103-230 32-152 (233)
115 KOG1271 Methyltransferases [Ge 99.3 1.7E-11 3.7E-16 97.6 12.0 107 120-233 68-185 (227)
116 TIGR03840 TMPT_Se_Te thiopurin 99.3 8.2E-12 1.8E-16 104.8 10.7 116 103-230 19-153 (213)
117 PRK11188 rrmJ 23S rRNA methylt 99.3 1.2E-11 2.5E-16 103.7 11.5 99 118-228 50-164 (209)
118 PTZ00146 fibrillarin; Provisio 99.3 1.3E-11 2.8E-16 107.1 12.1 107 116-228 129-236 (293)
119 PRK03522 rumB 23S rRNA methylu 99.3 3E-11 6.6E-16 107.4 14.8 120 100-228 150-273 (315)
120 smart00138 MeTrc Methyltransfe 99.3 1.5E-11 3.3E-16 106.6 12.5 106 119-230 99-243 (264)
121 PF13489 Methyltransf_23: Meth 99.3 1.3E-11 2.8E-16 98.4 11.0 108 105-232 7-118 (161)
122 PF10672 Methyltrans_SAM: S-ad 99.3 2.7E-11 5.9E-16 105.3 13.3 108 118-230 122-239 (286)
123 TIGR03438 probable methyltrans 99.3 3E-11 6.4E-16 106.8 13.7 109 119-228 63-176 (301)
124 COG0421 SpeE Spermidine syntha 99.3 6.4E-11 1.4E-15 102.9 15.0 139 118-269 75-223 (282)
125 KOG2904 Predicted methyltransf 99.3 2.5E-11 5.4E-16 102.5 11.6 125 100-230 123-286 (328)
126 PRK03612 spermidine synthase; 99.3 1.3E-11 2.9E-16 116.6 11.0 107 117-229 295-415 (521)
127 TIGR02021 BchM-ChlM magnesium 99.3 4.7E-11 1E-15 100.8 12.9 100 117-228 53-157 (219)
128 PRK11088 rrmA 23S rRNA methylt 99.3 1.3E-11 2.7E-16 107.7 9.4 94 119-228 85-180 (272)
129 PRK13255 thiopurine S-methyltr 99.3 3.3E-11 7.1E-16 101.5 10.9 114 102-227 21-153 (218)
130 TIGR01983 UbiG ubiquinone bios 99.3 8.6E-11 1.9E-15 99.3 13.5 103 119-230 45-150 (224)
131 PF02390 Methyltransf_4: Putat 99.3 6.6E-11 1.4E-15 98.0 12.4 101 122-227 20-131 (195)
132 PLN02336 phosphoethanolamine N 99.3 3.3E-11 7.2E-16 113.1 11.9 114 110-233 28-146 (475)
133 TIGR00438 rrmJ cell division p 99.3 5.9E-11 1.3E-15 97.8 11.9 107 110-228 23-145 (188)
134 COG0742 N6-adenine-specific me 99.3 2.3E-10 5E-15 92.8 15.0 128 98-230 21-155 (187)
135 PRK06202 hypothetical protein; 99.3 2.7E-11 5.8E-16 103.1 10.0 115 107-233 48-170 (232)
136 TIGR02085 meth_trns_rumB 23S r 99.3 1.5E-10 3.2E-15 105.3 15.4 120 99-228 209-333 (374)
137 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.7E-10 3.7E-15 107.3 15.1 120 102-228 276-399 (443)
138 PRK07580 Mg-protoporphyrin IX 99.2 1.6E-10 3.5E-15 98.0 13.5 98 118-227 62-164 (230)
139 COG0220 Predicted S-adenosylme 99.2 1.7E-10 3.8E-15 97.2 13.4 103 121-228 50-163 (227)
140 KOG4300 Predicted methyltransf 99.2 2.5E-11 5.4E-16 98.6 7.8 102 119-228 76-181 (252)
141 smart00650 rADc Ribosomal RNA 99.2 1E-10 2.3E-15 94.7 11.3 111 116-238 10-122 (169)
142 TIGR00479 rumA 23S rRNA (uraci 99.2 2.7E-10 5.9E-15 105.6 15.4 119 102-227 271-394 (431)
143 PF08003 Methyltransf_9: Prote 99.2 1.1E-10 2.3E-15 101.0 11.5 116 111-235 107-225 (315)
144 cd02440 AdoMet_MTases S-adenos 99.2 2.2E-10 4.8E-15 83.2 11.3 99 122-228 1-103 (107)
145 PF07279 DUF1442: Protein of u 99.2 9.5E-10 2.1E-14 90.4 15.9 150 104-272 26-180 (218)
146 PF01564 Spermine_synth: Sperm 99.2 1.2E-10 2.6E-15 99.9 11.2 106 118-229 75-191 (246)
147 PLN02672 methionine S-methyltr 99.2 2.8E-10 6.1E-15 113.9 14.8 122 102-229 97-278 (1082)
148 PRK05785 hypothetical protein; 99.2 1.5E-10 3.4E-15 98.1 10.4 88 119-223 51-141 (226)
149 PRK05031 tRNA (uracil-5-)-meth 99.2 9.6E-10 2.1E-14 99.6 15.9 124 98-228 182-319 (362)
150 PRK04338 N(2),N(2)-dimethylgua 99.2 8.1E-10 1.8E-14 100.4 15.0 118 102-228 39-157 (382)
151 PRK11933 yebU rRNA (cytosine-C 99.2 5.2E-10 1.1E-14 103.9 13.9 126 102-233 94-246 (470)
152 PHA03412 putative methyltransf 99.2 5.4E-10 1.2E-14 94.0 12.5 115 102-231 34-165 (241)
153 PF10294 Methyltransf_16: Puta 99.2 6.2E-10 1.3E-14 90.6 12.1 112 116-232 42-159 (173)
154 PF04989 CmcI: Cephalosporin h 99.1 3.3E-10 7.3E-15 93.3 10.3 158 102-264 15-185 (206)
155 COG2263 Predicted RNA methylas 99.1 1.2E-09 2.6E-14 88.0 12.8 102 104-218 27-136 (198)
156 PF02475 Met_10: Met-10+ like- 99.1 4.5E-10 9.8E-15 93.0 10.1 101 117-226 99-199 (200)
157 PLN02585 magnesium protoporphy 99.1 9.8E-10 2.1E-14 97.3 12.3 96 119-227 144-248 (315)
158 PHA03411 putative methyltransf 99.1 1E-09 2.2E-14 94.4 11.0 97 118-228 63-182 (279)
159 TIGR02143 trmA_only tRNA (urac 99.1 4.7E-09 1E-13 94.8 15.7 123 99-228 174-310 (353)
160 PF05724 TPMT: Thiopurine S-me 99.1 6.2E-10 1.3E-14 93.7 8.9 153 101-267 20-188 (218)
161 TIGR00308 TRM1 tRNA(guanine-26 99.1 3.6E-09 7.8E-14 95.8 14.1 101 121-228 46-146 (374)
162 PF05185 PRMT5: PRMT5 arginine 99.1 1.3E-09 2.7E-14 101.0 11.0 101 120-227 187-295 (448)
163 PTZ00338 dimethyladenosine tra 99.1 5.4E-09 1.2E-13 91.9 14.5 94 102-206 19-112 (294)
164 COG3963 Phospholipid N-methylt 99.0 3.4E-09 7.4E-14 83.5 11.6 124 98-228 27-155 (194)
165 PF01170 UPF0020: Putative RNA 99.0 3E-09 6.5E-14 87.0 11.8 121 102-228 11-150 (179)
166 KOG2915 tRNA(1-methyladenosine 99.0 1.8E-09 4E-14 91.3 10.2 115 103-223 89-203 (314)
167 PF00891 Methyltransf_2: O-met 99.0 1.8E-09 4E-14 92.4 10.2 108 110-235 91-205 (241)
168 COG2521 Predicted archaeal met 99.0 3.2E-10 7E-15 93.9 4.9 104 117-227 132-243 (287)
169 KOG2899 Predicted methyltransf 99.0 2.4E-09 5.2E-14 89.2 9.9 111 118-234 57-214 (288)
170 PF09445 Methyltransf_15: RNA 99.0 8.3E-10 1.8E-14 88.1 6.9 78 121-204 1-78 (163)
171 PRK13256 thiopurine S-methyltr 99.0 2.6E-09 5.6E-14 90.0 10.2 128 100-234 25-168 (226)
172 KOG1661 Protein-L-isoaspartate 99.0 2.5E-09 5.5E-14 87.2 9.5 115 105-228 66-192 (237)
173 COG2265 TrmA SAM-dependent met 99.0 1.2E-08 2.6E-13 94.0 13.9 123 98-228 268-395 (432)
174 COG2520 Predicted methyltransf 99.0 5.3E-09 1.1E-13 92.8 11.1 126 117-256 186-311 (341)
175 PRK00536 speE spermidine synth 99.0 2E-08 4.4E-13 86.4 14.4 98 117-228 70-170 (262)
176 PRK11727 23S rRNA mA1618 methy 98.9 1.4E-08 3.1E-13 89.9 13.1 83 119-204 114-198 (321)
177 COG0144 Sun tRNA and rRNA cyto 98.9 1.4E-08 3E-13 91.6 13.3 129 102-234 139-293 (355)
178 PF07021 MetW: Methionine bios 98.9 4.3E-09 9.3E-14 85.6 8.7 127 118-259 12-158 (193)
179 KOG3191 Predicted N6-DNA-methy 98.9 2E-08 4.3E-13 80.3 11.9 105 119-232 43-171 (209)
180 KOG1541 Predicted protein carb 98.9 2.1E-09 4.6E-14 88.3 6.5 113 102-228 31-159 (270)
181 PRK00274 ksgA 16S ribosomal RN 98.9 2.7E-08 5.9E-13 86.7 13.7 104 101-217 24-127 (272)
182 COG1041 Predicted DNA modifica 98.9 7.8E-09 1.7E-13 91.2 10.3 118 101-228 179-309 (347)
183 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.9 2.6E-08 5.7E-13 87.2 13.6 152 102-269 68-248 (283)
184 PRK14896 ksgA 16S ribosomal RN 98.9 1.5E-08 3.4E-13 87.6 11.9 91 101-205 11-101 (258)
185 PF06080 DUF938: Protein of un 98.9 1.1E-08 2.5E-13 84.2 9.9 115 122-237 28-150 (204)
186 KOG2361 Predicted methyltransf 98.9 2.5E-09 5.4E-14 89.1 5.3 107 122-232 74-186 (264)
187 KOG3010 Methyltransferase [Gen 98.9 2.4E-09 5.1E-14 89.3 5.0 111 108-227 21-135 (261)
188 COG4976 Predicted methyltransf 98.9 3.6E-09 7.7E-14 87.5 5.9 130 120-265 126-261 (287)
189 PRK00050 16S rRNA m(4)C1402 me 98.9 1.7E-08 3.7E-13 88.4 10.4 82 118-204 18-99 (296)
190 TIGR02081 metW methionine bios 98.9 9.3E-09 2E-13 85.1 8.3 89 119-221 13-104 (194)
191 TIGR00755 ksgA dimethyladenosi 98.9 4.1E-08 8.8E-13 84.7 12.3 102 102-217 12-116 (253)
192 PF12147 Methyltransf_20: Puta 98.9 1.8E-07 3.8E-12 80.5 15.8 129 105-236 121-256 (311)
193 KOG1499 Protein arginine N-met 98.8 1.2E-08 2.5E-13 89.7 8.7 103 117-228 58-166 (346)
194 PF02527 GidB: rRNA small subu 98.8 5.8E-08 1.3E-12 79.5 10.6 96 122-227 51-146 (184)
195 PRK01544 bifunctional N5-gluta 98.8 6.6E-08 1.4E-12 91.2 12.5 103 119-227 347-460 (506)
196 PF03291 Pox_MCEL: mRNA cappin 98.8 3.2E-08 6.9E-13 88.3 9.7 107 119-228 62-185 (331)
197 PRK04148 hypothetical protein; 98.8 5.7E-08 1.2E-12 74.9 9.1 104 107-228 4-108 (134)
198 KOG2730 Methylase [General fun 98.8 3.4E-08 7.5E-13 81.2 8.1 95 105-204 79-174 (263)
199 PF05891 Methyltransf_PK: AdoM 98.7 1.3E-08 2.8E-13 84.3 5.0 136 119-265 55-197 (218)
200 KOG3420 Predicted RNA methylas 98.7 3.1E-08 6.7E-13 76.3 6.2 79 116-204 45-123 (185)
201 COG0030 KsgA Dimethyladenosine 98.7 6.4E-07 1.4E-11 76.7 13.3 103 102-216 13-116 (259)
202 COG0357 GidB Predicted S-adeno 98.6 2.7E-07 5.8E-12 77.0 10.3 98 120-227 68-166 (215)
203 PF03059 NAS: Nicotianamine sy 98.6 1.6E-07 3.4E-12 81.3 9.3 103 120-228 121-229 (276)
204 KOG1500 Protein arginine N-met 98.6 1.4E-07 3E-12 82.2 8.6 99 118-226 176-279 (517)
205 PLN02232 ubiquinone biosynthes 98.6 8E-08 1.7E-12 77.1 6.4 78 148-231 1-83 (160)
206 PF05958 tRNA_U5-meth_tr: tRNA 98.6 2.9E-07 6.2E-12 83.2 10.4 116 97-216 171-300 (352)
207 KOG1975 mRNA cap methyltransfe 98.5 4.1E-07 8.9E-12 79.0 8.8 120 105-227 100-235 (389)
208 COG0293 FtsJ 23S rRNA methylas 98.5 3.2E-06 6.9E-11 69.8 13.3 101 118-230 44-160 (205)
209 KOG0820 Ribosomal RNA adenine 98.5 6.8E-07 1.5E-11 76.0 9.4 90 104-204 43-132 (315)
210 PF05219 DREV: DREV methyltran 98.5 7.3E-07 1.6E-11 75.7 9.6 148 98-265 68-236 (265)
211 COG4262 Predicted spermidine s 98.5 1.9E-06 4E-11 76.1 12.3 106 118-229 288-407 (508)
212 PRK10611 chemotaxis methyltran 98.5 5.4E-07 1.2E-11 78.7 8.9 106 119-229 115-262 (287)
213 PF04816 DUF633: Family of unk 98.5 1E-06 2.2E-11 73.4 9.7 98 123-227 1-99 (205)
214 PRK11783 rlmL 23S rRNA m(2)G24 98.5 1.7E-06 3.6E-11 85.0 12.0 100 101-204 171-312 (702)
215 PF02384 N6_Mtase: N-6 DNA Met 98.4 1.9E-06 4E-11 76.6 10.6 124 100-227 27-181 (311)
216 COG1352 CheR Methylase of chem 98.4 5E-06 1.1E-10 71.9 12.5 104 120-229 97-241 (268)
217 PF01728 FtsJ: FtsJ-like methy 98.4 4.8E-07 1E-11 74.0 5.9 98 119-228 23-138 (181)
218 KOG2187 tRNA uracil-5-methyltr 98.4 1.7E-06 3.6E-11 79.6 9.8 125 98-227 358-488 (534)
219 PRK10742 putative methyltransf 98.4 2.6E-06 5.7E-11 72.3 10.4 88 109-204 76-173 (250)
220 PF08123 DOT1: Histone methyla 98.4 2.9E-06 6.2E-11 70.7 10.2 112 114-231 37-160 (205)
221 TIGR00478 tly hemolysin TlyA f 98.4 1.9E-06 4.2E-11 72.9 9.1 94 118-227 74-169 (228)
222 COG0116 Predicted N6-adenine-s 98.3 4.6E-06 9.9E-11 74.9 10.7 121 102-228 174-343 (381)
223 KOG1709 Guanidinoacetate methy 98.3 8.8E-06 1.9E-10 67.0 11.3 107 118-232 100-209 (271)
224 COG4076 Predicted RNA methylas 98.3 9.3E-07 2E-11 71.2 5.5 99 121-231 34-137 (252)
225 PF01739 CheR: CheR methyltran 98.3 4.9E-07 1.1E-11 74.8 4.1 106 119-230 31-176 (196)
226 PF06962 rRNA_methylase: Putat 98.3 1.8E-06 4E-11 67.0 6.3 109 146-265 1-121 (140)
227 PF13679 Methyltransf_32: Meth 98.3 2E-05 4.2E-10 61.9 12.2 90 108-204 10-108 (141)
228 TIGR00006 S-adenosyl-methyltra 98.3 1.6E-05 3.4E-10 70.0 12.2 84 117-204 18-101 (305)
229 KOG1562 Spermidine synthase [A 98.3 8.6E-06 1.9E-10 70.1 10.1 142 116-270 118-270 (337)
230 TIGR03439 methyl_EasF probable 98.2 2.2E-05 4.7E-10 69.8 12.7 109 119-227 76-195 (319)
231 TIGR02987 met_A_Alw26 type II 98.2 8E-06 1.7E-10 77.8 10.7 84 119-204 31-121 (524)
232 PF05148 Methyltransf_8: Hypot 98.2 2.9E-06 6.3E-11 69.9 6.5 123 101-263 55-179 (219)
233 KOG3178 Hydroxyindole-O-methyl 98.2 1.7E-05 3.7E-10 70.1 11.1 97 120-233 178-279 (342)
234 PF01269 Fibrillarin: Fibrilla 98.2 1.3E-05 2.8E-10 66.8 9.6 108 115-228 69-177 (229)
235 PF05711 TylF: Macrocin-O-meth 98.2 5.2E-06 1.1E-10 70.9 7.4 140 103-256 54-229 (248)
236 TIGR01444 fkbM_fam methyltrans 98.2 7.6E-06 1.6E-10 64.0 7.2 59 122-182 1-59 (143)
237 KOG1122 tRNA and rRNA cytosine 98.1 1.4E-05 3.1E-10 71.8 8.6 110 116-231 238-373 (460)
238 PF00398 RrnaAD: Ribosomal RNA 98.1 1.4E-05 3E-10 69.4 8.2 108 101-217 12-119 (262)
239 COG3510 CmcI Cephalosporin hyd 98.1 0.00013 2.8E-09 59.2 12.4 148 102-255 52-209 (237)
240 PF02005 TRM: N2,N2-dimethylgu 98.1 1.8E-05 3.8E-10 72.0 8.4 107 119-231 49-156 (377)
241 COG2384 Predicted SAM-dependen 98.0 5.9E-05 1.3E-09 62.6 10.0 95 119-220 16-111 (226)
242 PF09243 Rsm22: Mitochondrial 97.9 4.1E-05 9E-10 66.8 8.2 101 118-227 32-137 (274)
243 PF05971 Methyltransf_10: Prot 97.9 3.2E-05 7E-10 67.7 7.4 81 121-205 104-187 (299)
244 PF01795 Methyltransf_5: MraW 97.9 8.6E-05 1.9E-09 65.4 9.8 87 117-206 18-104 (310)
245 COG0275 Predicted S-adenosylme 97.9 0.00026 5.7E-09 61.5 12.1 86 116-204 20-105 (314)
246 KOG3045 Predicted RNA methylas 97.9 8.8E-05 1.9E-09 62.9 8.6 100 103-231 165-266 (325)
247 KOG3201 Uncharacterized conser 97.8 6.7E-05 1.5E-09 59.2 6.9 109 116-228 26-139 (201)
248 COG0500 SmtA SAM-dependent met 97.8 0.0002 4.4E-09 55.0 9.9 105 123-234 52-160 (257)
249 PF03141 Methyltransf_29: Puta 97.8 1.6E-05 3.5E-10 73.3 4.0 98 121-231 119-221 (506)
250 PF01861 DUF43: Protein of unk 97.8 0.0025 5.5E-08 53.9 16.3 97 119-223 44-142 (243)
251 COG3897 Predicted methyltransf 97.8 8.7E-05 1.9E-09 60.4 6.9 108 106-227 66-176 (218)
252 KOG3115 Methyltransferase-like 97.7 0.00015 3.3E-09 59.3 8.0 105 121-227 62-181 (249)
253 KOG4589 Cell division protein 97.7 0.00034 7.4E-09 56.6 9.9 104 118-235 68-188 (232)
254 PF04672 Methyltransf_19: S-ad 97.7 0.00036 7.8E-09 60.0 10.3 164 68-232 13-193 (267)
255 COG1889 NOP1 Fibrillarin-like 97.7 0.00042 9E-09 56.8 9.7 116 103-227 58-178 (231)
256 COG1189 Predicted rRNA methyla 97.7 0.00091 2E-08 56.3 11.7 99 117-227 77-176 (245)
257 KOG2352 Predicted spermine/spe 97.6 8.7E-05 1.9E-09 68.3 5.6 116 120-237 296-424 (482)
258 COG1867 TRM1 N2,N2-dimethylgua 97.6 0.00071 1.5E-08 60.4 11.1 104 120-231 53-156 (380)
259 PRK11760 putative 23S rRNA C24 97.6 0.00017 3.7E-09 64.0 7.1 99 118-234 210-309 (357)
260 KOG1269 SAM-dependent methyltr 97.6 8.9E-05 1.9E-09 66.9 5.4 107 117-231 108-217 (364)
261 KOG2940 Predicted methyltransf 97.6 4.6E-05 1E-09 63.5 2.7 98 120-228 73-173 (325)
262 PRK01747 mnmC bifunctional tRN 97.6 0.00059 1.3E-08 66.9 10.6 103 120-227 58-204 (662)
263 COG0286 HsdM Type I restrictio 97.5 0.0045 9.8E-08 58.5 15.2 136 99-235 166-335 (489)
264 PF07942 N2227: N2227-like pro 97.4 0.001 2.2E-08 57.6 9.2 107 119-231 56-204 (270)
265 KOG0822 Protein kinase inhibit 97.4 0.00071 1.5E-08 62.8 8.1 100 121-227 369-476 (649)
266 PHA01634 hypothetical protein 97.3 0.00077 1.7E-08 51.1 6.2 75 118-204 27-101 (156)
267 PF07091 FmrO: Ribosomal RNA m 97.3 0.001 2.3E-08 56.5 7.4 89 105-203 90-179 (251)
268 COG4798 Predicted methyltransf 97.2 0.00064 1.4E-08 55.4 5.1 113 115-235 44-173 (238)
269 KOG1253 tRNA methyltransferase 97.2 0.00039 8.5E-09 64.0 4.3 115 112-229 102-216 (525)
270 PF04445 SAM_MT: Putative SAM- 97.2 0.00047 1E-08 58.3 4.4 87 110-204 64-160 (234)
271 KOG0024 Sorbitol dehydrogenase 97.2 0.0036 7.7E-08 55.1 9.6 106 116-229 166-273 (354)
272 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.1 0.00028 6E-09 60.7 1.8 109 119-231 56-201 (256)
273 COG1064 AdhP Zn-dependent alco 97.0 0.0061 1.3E-07 54.5 9.7 98 116-231 163-261 (339)
274 KOG1596 Fibrillarin and relate 97.0 0.0019 4.1E-08 54.4 5.9 107 116-228 153-260 (317)
275 KOG1099 SAM-dependent methyltr 96.9 0.0045 9.7E-08 51.8 7.8 98 119-228 41-162 (294)
276 COG5459 Predicted rRNA methyla 96.9 0.00083 1.8E-08 59.4 3.5 108 118-229 112-225 (484)
277 KOG1501 Arginine N-methyltrans 96.9 0.0023 4.9E-08 58.3 6.2 59 122-182 69-127 (636)
278 KOG2198 tRNA cytosine-5-methyl 96.9 0.0056 1.2E-07 54.7 8.4 116 115-231 151-298 (375)
279 COG1063 Tdh Threonine dehydrog 96.8 0.017 3.8E-07 52.2 11.3 106 118-234 167-274 (350)
280 KOG1331 Predicted methyltransf 96.5 0.0039 8.5E-08 53.8 4.9 106 102-228 31-142 (293)
281 KOG4058 Uncharacterized conser 96.5 0.013 2.9E-07 45.7 7.3 114 105-228 58-171 (199)
282 KOG2671 Putative RNA methylase 96.5 0.0052 1.1E-07 54.4 5.6 118 102-227 191-352 (421)
283 COG4301 Uncharacterized conser 96.3 0.11 2.3E-06 44.3 12.1 112 114-228 73-192 (321)
284 PF00107 ADH_zinc_N: Zinc-bind 96.3 0.01 2.3E-07 45.1 5.7 92 129-232 1-92 (130)
285 KOG3987 Uncharacterized conser 96.3 0.00063 1.4E-08 56.0 -1.2 94 119-231 112-209 (288)
286 KOG1227 Putative methyltransfe 96.3 0.0027 5.9E-08 55.1 2.5 104 119-231 194-299 (351)
287 cd08283 FDH_like_1 Glutathione 96.2 0.084 1.8E-06 48.2 12.0 108 114-229 179-306 (386)
288 PF11599 AviRa: RRNA methyltra 96.2 0.072 1.6E-06 44.3 10.0 108 119-229 51-214 (246)
289 PF11968 DUF3321: Putative met 96.0 0.016 3.4E-07 48.3 5.6 100 102-224 30-139 (219)
290 PRK09880 L-idonate 5-dehydroge 96.0 0.049 1.1E-06 48.8 9.4 99 118-230 168-267 (343)
291 PF02254 TrkA_N: TrkA-N domain 95.8 0.028 6.1E-07 41.9 5.7 89 128-228 4-95 (116)
292 PRK09424 pntA NAD(P) transhydr 95.7 0.13 2.8E-06 48.8 11.3 109 118-234 163-290 (509)
293 KOG2793 Putative N2,N2-dimethy 95.7 0.053 1.1E-06 46.4 7.9 101 119-228 86-198 (248)
294 cd08237 ribitol-5-phosphate_DH 95.6 0.092 2E-06 47.1 9.6 94 118-229 162-256 (341)
295 cd00315 Cyt_C5_DNA_methylase C 95.6 0.05 1.1E-06 47.5 7.6 95 122-231 2-113 (275)
296 PRK13699 putative methylase; P 95.6 0.022 4.8E-07 48.3 5.1 51 173-227 2-70 (227)
297 PF05430 Methyltransf_30: S-ad 95.5 0.021 4.5E-07 43.7 4.3 52 172-228 32-89 (124)
298 PRK11524 putative methyltransf 95.5 0.053 1.1E-06 47.6 7.3 56 108-166 195-252 (284)
299 PF01555 N6_N4_Mtase: DNA meth 95.3 0.057 1.2E-06 45.0 6.7 55 105-162 175-231 (231)
300 TIGR00027 mthyl_TIGR00027 meth 95.3 0.51 1.1E-05 40.9 12.7 109 120-231 82-199 (260)
301 TIGR03451 mycoS_dep_FDH mycoth 95.2 0.18 3.9E-06 45.5 9.9 104 116-230 173-277 (358)
302 PRK11524 putative methyltransf 95.1 0.042 9.2E-07 48.2 5.5 53 172-228 8-79 (284)
303 PF03141 Methyltransf_29: Puta 95.0 0.012 2.7E-07 54.6 2.0 98 119-230 365-468 (506)
304 cd08254 hydroxyacyl_CoA_DH 6-h 95.0 0.27 5.8E-06 43.4 10.5 99 117-228 163-262 (338)
305 cd08281 liver_ADH_like1 Zinc-d 95.0 0.18 3.9E-06 45.7 9.4 102 116-230 188-291 (371)
306 PRK13699 putative methylase; P 94.8 0.12 2.7E-06 43.7 7.2 56 109-167 151-208 (227)
307 TIGR03201 dearomat_had 6-hydro 94.7 0.25 5.4E-06 44.4 9.5 107 116-231 163-274 (349)
308 PLN03154 putative allyl alcoho 94.7 0.51 1.1E-05 42.5 11.4 102 115-229 154-258 (348)
309 COG0686 Ald Alanine dehydrogen 94.5 0.45 9.9E-06 42.0 10.0 103 120-235 168-274 (371)
310 TIGR00561 pntA NAD(P) transhyd 94.5 0.27 5.9E-06 46.6 9.3 102 118-227 162-282 (511)
311 COG1565 Uncharacterized conser 94.4 0.22 4.7E-06 44.8 8.1 48 120-167 78-132 (370)
312 COG3129 Predicted SAM-dependen 94.4 0.21 4.6E-06 42.1 7.5 87 120-210 79-168 (292)
313 cd08239 THR_DH_like L-threonin 94.3 0.39 8.5E-06 42.7 9.8 101 116-229 160-262 (339)
314 KOG2651 rRNA adenine N-6-methy 94.3 0.17 3.7E-06 45.7 7.1 54 107-162 141-194 (476)
315 cd05188 MDR Medium chain reduc 94.2 0.61 1.3E-05 39.4 10.4 98 118-228 133-231 (271)
316 KOG2352 Predicted spermine/spe 94.1 0.22 4.8E-06 46.3 7.8 98 122-229 51-161 (482)
317 KOG2798 Putative trehalase [Ca 94.1 0.28 6E-06 43.2 7.9 103 121-229 152-296 (369)
318 PF12692 Methyltransf_17: S-ad 94.1 0.99 2.1E-05 35.4 10.0 101 121-232 30-137 (160)
319 COG1062 AdhC Zn-dependent alco 94.0 0.57 1.2E-05 41.8 9.8 108 116-235 182-291 (366)
320 KOG1098 Putative SAM-dependent 93.9 0.16 3.5E-06 48.5 6.5 100 117-232 42-160 (780)
321 COG0604 Qor NADPH:quinone redu 93.9 0.66 1.4E-05 41.5 10.3 103 115-230 138-242 (326)
322 PLN02740 Alcohol dehydrogenase 93.9 0.57 1.2E-05 42.7 10.1 103 115-229 194-300 (381)
323 cd08230 glucose_DH Glucose deh 93.9 0.34 7.5E-06 43.5 8.6 96 118-230 171-270 (355)
324 PTZ00357 methyltransferase; Pr 93.8 0.34 7.3E-06 47.1 8.5 103 122-224 703-830 (1072)
325 PRK10309 galactitol-1-phosphat 93.7 0.74 1.6E-05 41.2 10.4 103 117-230 158-261 (347)
326 PF00145 DNA_methylase: C-5 cy 93.7 0.45 9.7E-06 42.0 8.9 94 122-231 2-112 (335)
327 PF05050 Methyltransf_21: Meth 93.6 0.21 4.6E-06 39.3 6.0 43 125-167 1-48 (167)
328 COG0677 WecC UDP-N-acetyl-D-ma 93.6 0.86 1.9E-05 41.6 10.2 106 121-236 10-135 (436)
329 PLN02827 Alcohol dehydrogenase 93.5 0.64 1.4E-05 42.4 9.8 102 116-229 190-295 (378)
330 PF02636 Methyltransf_28: Puta 93.5 0.19 4.1E-06 43.2 6.0 47 120-166 19-72 (252)
331 PF10237 N6-adenineMlase: Prob 93.5 1.5 3.3E-05 35.1 10.6 107 103-227 7-121 (162)
332 TIGR02822 adh_fam_2 zinc-bindi 93.4 0.96 2.1E-05 40.3 10.6 94 115-230 161-255 (329)
333 cd08294 leukotriene_B4_DH_like 93.4 1.3 2.7E-05 39.0 11.3 101 114-228 138-240 (329)
334 TIGR03366 HpnZ_proposed putati 93.4 1 2.2E-05 39.0 10.5 101 118-231 119-220 (280)
335 TIGR02825 B4_12hDH leukotriene 93.3 1.7 3.6E-05 38.4 11.9 101 114-228 133-236 (325)
336 COG3315 O-Methyltransferase in 93.3 0.99 2.2E-05 39.9 10.2 108 120-230 93-210 (297)
337 KOG2912 Predicted DNA methylas 93.2 0.14 3.1E-06 45.0 4.7 97 106-204 84-187 (419)
338 cd08285 NADP_ADH NADP(H)-depen 93.2 1.2 2.6E-05 39.8 11.0 104 116-230 163-267 (351)
339 cd08293 PTGR2 Prostaglandin re 93.2 1.2 2.5E-05 39.7 10.8 94 121-227 156-252 (345)
340 PF03721 UDPG_MGDP_dh_N: UDP-g 93.2 3.3 7.1E-05 33.9 12.5 103 122-236 2-127 (185)
341 cd08295 double_bond_reductase_ 93.2 1.6 3.5E-05 38.8 11.6 101 115-228 147-250 (338)
342 TIGR00518 alaDH alanine dehydr 92.9 1.2 2.6E-05 40.7 10.4 104 119-235 166-273 (370)
343 cd05278 FDH_like Formaldehyde 92.8 1 2.2E-05 40.0 9.8 102 116-228 164-266 (347)
344 TIGR01202 bchC 2-desacetyl-2-h 92.6 0.42 9.1E-06 42.2 7.0 87 119-229 144-231 (308)
345 PF06859 Bin3: Bicoid-interact 92.5 0.092 2E-06 39.0 2.2 40 195-234 1-49 (110)
346 TIGR02818 adh_III_F_hyde S-(hy 92.2 2.2 4.7E-05 38.7 11.3 103 116-230 182-288 (368)
347 TIGR02819 fdhA_non_GSH formald 92.2 2.9 6.3E-05 38.4 12.1 106 116-230 182-300 (393)
348 PF01210 NAD_Gly3P_dh_N: NAD-d 92.1 0.93 2E-05 35.9 7.7 95 122-227 1-101 (157)
349 cd08261 Zn_ADH7 Alcohol dehydr 91.9 2.5 5.3E-05 37.5 11.1 101 115-227 155-256 (337)
350 KOG2078 tRNA modification enzy 91.9 0.13 2.7E-06 47.1 2.7 64 118-184 248-312 (495)
351 cd08231 MDR_TM0436_like Hypoth 91.7 2.4 5.1E-05 38.1 10.9 101 119-228 177-279 (361)
352 KOG2360 Proliferation-associat 91.6 0.26 5.7E-06 44.5 4.3 98 102-204 196-293 (413)
353 cd00401 AdoHcyase S-adenosyl-L 91.6 1.7 3.7E-05 40.2 9.8 88 118-229 200-289 (413)
354 PF11312 DUF3115: Protein of u 91.5 0.7 1.5E-05 40.8 6.8 111 120-230 87-243 (315)
355 cd08300 alcohol_DH_class_III c 91.5 2.8 6.1E-05 37.9 11.2 104 115-230 182-289 (368)
356 COG1748 LYS9 Saccharopine dehy 91.5 0.93 2E-05 41.5 7.8 83 121-215 2-88 (389)
357 TIGR00675 dcm DNA-methyltransf 91.5 1 2.2E-05 40.1 8.1 92 123-231 1-110 (315)
358 cd05213 NAD_bind_Glutamyl_tRNA 91.4 5.3 0.00011 35.5 12.6 95 118-230 176-273 (311)
359 PRK07502 cyclohexadienyl dehyd 91.3 1.5 3.3E-05 38.7 9.1 88 121-226 7-97 (307)
360 COG1568 Predicted methyltransf 91.3 2.6 5.6E-05 36.7 9.8 103 118-228 151-259 (354)
361 cd08238 sorbose_phosphate_red 91.2 2.1 4.6E-05 39.4 10.2 103 117-227 173-286 (410)
362 KOG3924 Putative protein methy 91.1 3.7 8.1E-05 37.4 11.1 112 116-233 189-312 (419)
363 PF10354 DUF2431: Domain of un 90.9 1.4 2.9E-05 35.5 7.5 100 126-228 3-124 (166)
364 PRK11064 wecC UDP-N-acetyl-D-m 90.9 4.9 0.00011 37.2 12.3 105 121-235 4-125 (415)
365 PF03686 UPF0146: Uncharacteri 90.8 1.3 2.7E-05 33.9 6.8 95 112-228 6-101 (127)
366 PF03807 F420_oxidored: NADP o 90.7 0.81 1.8E-05 32.6 5.6 85 123-226 2-91 (96)
367 cd08301 alcohol_DH_plants Plan 90.6 3.4 7.3E-05 37.3 10.9 104 115-230 183-290 (369)
368 cd08286 FDH_like_ADH2 formalde 90.6 4.2 9E-05 36.1 11.3 100 117-227 164-264 (345)
369 cd05285 sorbitol_DH Sorbitol d 90.6 3.1 6.6E-05 37.0 10.4 103 114-228 157-264 (343)
370 KOG0022 Alcohol dehydrogenase, 90.4 1.9 4E-05 38.3 8.3 109 115-235 188-300 (375)
371 cd08233 butanediol_DH_like (2R 90.4 3.2 6.9E-05 37.1 10.4 104 115-230 168-273 (351)
372 PF04378 RsmJ: Ribosomal RNA s 90.4 1.1 2.4E-05 38.4 6.9 114 105-227 44-162 (245)
373 COG0270 Dcm Site-specific DNA 90.3 1.7 3.7E-05 38.9 8.4 99 120-231 3-118 (328)
374 PRK15182 Vi polysaccharide bio 90.2 2.6 5.7E-05 39.2 9.9 104 119-235 5-126 (425)
375 TIGR02356 adenyl_thiF thiazole 90.2 4.1 8.8E-05 33.8 10.1 91 119-215 20-131 (202)
376 PRK15057 UDP-glucose 6-dehydro 90.2 1.7 3.6E-05 40.0 8.4 102 122-235 2-123 (388)
377 cd08277 liver_alcohol_DH_like 90.1 4.4 9.6E-05 36.5 11.1 103 116-230 181-287 (365)
378 PRK05786 fabG 3-ketoacyl-(acyl 90.0 6.7 0.00015 32.6 11.5 106 119-228 4-134 (238)
379 cd08255 2-desacetyl-2-hydroxye 89.8 3.1 6.7E-05 35.6 9.5 94 115-227 93-188 (277)
380 PRK06940 short chain dehydroge 89.6 4.6 9.9E-05 34.9 10.4 80 121-204 3-85 (275)
381 PF02153 PDH: Prephenate dehyd 89.6 2.1 4.5E-05 37.0 8.1 76 134-228 2-77 (258)
382 cd08232 idonate-5-DH L-idonate 89.6 2.6 5.6E-05 37.3 9.1 95 119-227 165-260 (339)
383 PRK08114 cystathionine beta-ly 89.4 17 0.00038 33.4 14.5 131 103-239 60-196 (395)
384 PRK12475 thiamine/molybdopteri 89.4 4.8 0.0001 36.3 10.6 80 119-204 23-125 (338)
385 PRK05708 2-dehydropantoate 2-r 89.3 1.2 2.7E-05 39.4 6.6 94 121-227 3-102 (305)
386 KOG2782 Putative SAM dependent 89.2 0.33 7.1E-06 40.6 2.7 88 115-204 39-127 (303)
387 PLN02586 probable cinnamyl alc 89.2 5.9 0.00013 35.8 11.2 96 118-229 182-278 (360)
388 PRK09422 ethanol-active dehydr 89.1 7.7 0.00017 34.2 11.8 102 114-228 157-260 (338)
389 cd08278 benzyl_alcohol_DH Benz 89.1 4 8.7E-05 36.8 10.0 101 116-228 183-284 (365)
390 PF01053 Cys_Met_Meta_PP: Cys/ 89.0 8.5 0.00018 35.4 12.0 131 103-239 53-188 (386)
391 COG0287 TyrA Prephenate dehydr 89.0 3.1 6.8E-05 36.4 8.8 90 121-228 4-96 (279)
392 COG2961 ComJ Protein involved 88.9 8.3 0.00018 33.1 10.8 117 102-227 72-193 (279)
393 cd00757 ThiF_MoeB_HesA_family 88.7 5.6 0.00012 33.5 10.0 90 119-214 20-130 (228)
394 KOG1197 Predicted quinone oxid 88.6 5.5 0.00012 34.4 9.6 99 116-227 143-243 (336)
395 cd05279 Zn_ADH1 Liver alcohol 88.6 6.1 0.00013 35.6 10.9 102 116-229 180-285 (365)
396 KOG0023 Alcohol dehydrogenase, 88.6 2.3 5E-05 37.8 7.5 100 118-230 180-280 (360)
397 PRK07417 arogenate dehydrogena 88.2 3 6.4E-05 36.4 8.2 87 122-228 2-89 (279)
398 PRK08655 prephenate dehydrogen 88.0 3.6 7.9E-05 38.4 9.2 85 122-224 2-87 (437)
399 PRK09496 trkA potassium transp 87.8 5.1 0.00011 37.3 10.1 96 120-225 231-327 (453)
400 PRK09496 trkA potassium transp 87.6 5.8 0.00013 36.8 10.3 95 122-227 2-97 (453)
401 PRK08306 dipicolinate synthase 87.6 6.5 0.00014 34.7 10.0 95 119-235 151-246 (296)
402 PF07757 AdoMet_MTase: Predict 87.5 0.98 2.1E-05 33.5 3.9 33 119-154 58-90 (112)
403 cd08296 CAD_like Cinnamyl alco 87.5 5.1 0.00011 35.5 9.5 98 116-228 160-258 (333)
404 TIGR00692 tdh L-threonine 3-de 87.4 12 0.00025 33.3 11.8 99 118-228 160-260 (340)
405 PRK03659 glutathione-regulated 87.3 2 4.4E-05 41.8 7.3 95 121-227 401-496 (601)
406 PRK08293 3-hydroxybutyryl-CoA 87.3 7.7 0.00017 33.9 10.3 96 121-227 4-118 (287)
407 COG1255 Uncharacterized protei 87.2 8 0.00017 29.1 8.6 88 113-220 7-95 (129)
408 cd08236 sugar_DH NAD(P)-depend 87.1 10 0.00022 33.6 11.2 101 115-228 155-257 (343)
409 PRK06249 2-dehydropantoate 2-r 87.0 1.9 4E-05 38.3 6.4 34 194-227 71-104 (313)
410 cd08263 Zn_ADH10 Alcohol dehyd 87.0 6.5 0.00014 35.4 10.0 99 118-228 186-286 (367)
411 PRK12921 2-dehydropantoate 2-r 87.0 3.1 6.8E-05 36.4 7.8 92 122-226 2-99 (305)
412 PRK10669 putative cation:proto 86.7 2.4 5.2E-05 40.9 7.4 95 121-227 418-513 (558)
413 cd05281 TDH Threonine dehydrog 86.6 11 0.00024 33.4 11.2 98 118-228 162-261 (341)
414 PRK10083 putative oxidoreducta 86.5 8.5 0.00019 34.0 10.4 101 115-228 156-258 (339)
415 PRK03562 glutathione-regulated 86.4 2.5 5.4E-05 41.4 7.4 95 121-227 401-496 (621)
416 PRK08324 short chain dehydroge 86.3 8.4 0.00018 38.1 11.0 82 119-204 421-507 (681)
417 TIGR00497 hsdM type I restrict 86.1 6.4 0.00014 37.4 9.8 124 98-225 194-351 (501)
418 PLN02662 cinnamyl-alcohol dehy 86.1 4.3 9.4E-05 35.6 8.2 79 119-203 3-84 (322)
419 cd08291 ETR_like_1 2-enoyl thi 86.1 10 0.00022 33.4 10.6 97 119-228 142-241 (324)
420 cd08265 Zn_ADH3 Alcohol dehydr 86.0 7.2 0.00016 35.5 9.8 103 116-228 200-306 (384)
421 PLN02256 arogenate dehydrogena 86.0 9.9 0.00022 33.7 10.4 89 119-228 35-125 (304)
422 PLN02494 adenosylhomocysteinas 86.0 5.5 0.00012 37.5 9.0 88 118-228 252-340 (477)
423 PF07015 VirC1: VirC1 protein; 85.9 2 4.3E-05 36.4 5.5 75 129-203 12-91 (231)
424 KOG1201 Hydroxysteroid 17-beta 85.8 8.9 0.00019 33.7 9.6 83 118-204 36-123 (300)
425 KOG2920 Predicted methyltransf 85.6 0.62 1.3E-05 40.5 2.4 39 118-158 115-153 (282)
426 COG1004 Ugd Predicted UDP-gluc 85.6 22 0.00047 32.8 12.2 102 122-235 2-126 (414)
427 PF04072 LCM: Leucine carboxyl 85.5 7.7 0.00017 31.4 8.8 94 109-204 67-166 (183)
428 PF03269 DUF268: Caenorhabditi 85.5 2 4.3E-05 34.3 5.0 95 120-229 2-111 (177)
429 cd08279 Zn_ADH_class_III Class 85.3 7.4 0.00016 34.9 9.5 101 116-228 179-281 (363)
430 PLN02353 probable UDP-glucose 85.1 33 0.00072 32.4 13.9 105 121-235 2-133 (473)
431 KOG0821 Predicted ribosomal RN 85.1 3 6.6E-05 35.1 6.1 61 118-182 49-109 (326)
432 PF05206 TRM13: Methyltransfer 85.0 1.8 3.8E-05 37.5 5.0 39 119-157 18-60 (259)
433 PRK15001 SAM-dependent 23S rib 85.0 6.7 0.00015 35.9 8.9 90 122-228 47-141 (378)
434 PLN02178 cinnamyl-alcohol dehy 85.0 10 0.00022 34.5 10.3 95 119-230 178-274 (375)
435 cd08266 Zn_ADH_like1 Alcohol d 85.0 11 0.00025 32.8 10.4 100 116-228 163-264 (342)
436 PRK05396 tdh L-threonine 3-deh 85.0 9 0.0002 33.9 9.8 100 119-229 163-263 (341)
437 TIGR00853 pts-lac PTS system, 84.9 9.2 0.0002 27.6 8.0 70 121-221 4-73 (95)
438 PRK07688 thiamine/molybdopteri 84.9 12 0.00026 33.7 10.5 80 119-204 23-125 (339)
439 TIGR00936 ahcY adenosylhomocys 84.9 8.4 0.00018 35.6 9.6 87 118-228 193-281 (406)
440 PF06460 NSP13: Coronavirus NS 84.9 4.2 9.2E-05 35.0 7.0 90 119-228 61-168 (299)
441 PRK06522 2-dehydropantoate 2-r 84.7 9.9 0.00022 33.1 9.8 93 122-227 2-98 (304)
442 PLN02989 cinnamyl-alcohol dehy 84.5 5.9 0.00013 34.9 8.4 78 120-203 5-85 (325)
443 PLN02514 cinnamyl-alcohol dehy 84.5 14 0.00031 33.1 10.9 97 118-230 179-276 (357)
444 PF01262 AlaDh_PNT_C: Alanine 84.4 0.84 1.8E-05 36.6 2.6 44 117-162 17-61 (168)
445 PRK08507 prephenate dehydrogen 84.2 4.5 9.7E-05 35.1 7.3 85 122-228 2-89 (275)
446 cd08234 threonine_DH_like L-th 84.2 13 0.00028 32.6 10.4 100 115-228 155-256 (334)
447 COG4017 Uncharacterized protei 83.9 14 0.0003 30.6 9.2 100 111-239 36-137 (254)
448 cd05286 QOR2 Quinone oxidoredu 83.9 14 0.0003 31.7 10.4 100 115-227 132-233 (320)
449 cd08243 quinone_oxidoreductase 83.9 17 0.00037 31.4 10.9 96 117-228 140-237 (320)
450 PF02826 2-Hacid_dh_C: D-isome 83.8 5.5 0.00012 32.2 7.2 98 118-239 34-134 (178)
451 PRK09028 cystathionine beta-ly 83.8 27 0.00058 32.2 12.5 121 113-239 69-193 (394)
452 PRK05476 S-adenosyl-L-homocyst 83.6 8.9 0.00019 35.7 9.2 86 119-228 211-298 (425)
453 PRK08762 molybdopterin biosynt 83.6 12 0.00026 34.2 10.1 80 119-204 134-234 (376)
454 cd08282 PFDH_like Pseudomonas 83.5 26 0.00057 31.6 12.3 106 116-231 173-287 (375)
455 PRK08594 enoyl-(acyl carrier p 83.4 18 0.00038 30.8 10.6 84 119-203 6-95 (257)
456 PF08351 DUF1726: Domain of un 83.4 2.9 6.2E-05 30.1 4.7 70 193-263 9-89 (92)
457 TIGR01324 cysta_beta_ly_B cyst 83.3 31 0.00067 31.5 12.6 128 105-238 50-181 (377)
458 PF02558 ApbA: Ketopantoate re 83.2 1.8 3.9E-05 33.6 4.0 91 124-227 2-99 (151)
459 COG4121 Uncharacterized conser 83.0 3 6.6E-05 35.8 5.5 106 119-227 58-206 (252)
460 PRK08818 prephenate dehydrogen 82.9 5.7 0.00012 36.3 7.6 32 121-153 5-38 (370)
461 PF00899 ThiF: ThiF family; I 82.9 9.6 0.00021 29.1 7.9 89 120-214 2-111 (135)
462 TIGR01915 npdG NADPH-dependent 82.9 17 0.00036 30.3 10.0 95 122-228 2-99 (219)
463 cd08241 QOR1 Quinone oxidoredu 82.8 21 0.00045 30.7 11.0 100 116-228 136-237 (323)
464 COG0569 TrkA K+ transport syst 82.7 11 0.00023 31.8 8.8 75 121-206 1-77 (225)
465 PRK07530 3-hydroxybutyryl-CoA 82.6 20 0.00044 31.2 10.9 93 121-226 5-116 (292)
466 cd00755 YgdL_like Family of ac 82.5 21 0.00045 30.3 10.4 81 119-204 10-111 (231)
467 cd08297 CAD3 Cinnamyl alcohol 82.4 20 0.00044 31.6 11.0 101 116-228 162-264 (341)
468 PF12242 Eno-Rase_NADH_b: NAD( 82.3 4 8.6E-05 28.3 4.8 36 118-153 37-73 (78)
469 cd08260 Zn_ADH6 Alcohol dehydr 82.3 17 0.00038 32.1 10.5 99 116-227 162-262 (345)
470 cd05288 PGDH Prostaglandin deh 82.2 15 0.00032 32.2 10.0 98 117-227 143-242 (329)
471 KOG2539 Mitochondrial/chloropl 82.1 1.2 2.6E-05 41.4 2.9 111 118-235 199-318 (491)
472 PRK11199 tyrA bifunctional cho 82.0 16 0.00035 33.3 10.3 33 121-154 99-132 (374)
473 PRK06914 short chain dehydroge 82.0 31 0.00068 29.4 15.9 81 120-203 3-89 (280)
474 KOG0053 Cystathionine beta-lya 82.0 43 0.00093 31.0 13.5 124 110-239 82-209 (409)
475 cd01488 Uba3_RUB Ubiquitin act 82.0 16 0.00034 32.2 9.7 87 122-214 1-107 (291)
476 PRK06130 3-hydroxybutyryl-CoA 81.8 18 0.00039 31.9 10.3 93 121-225 5-111 (311)
477 PLN02702 L-idonate 5-dehydroge 81.7 19 0.00041 32.3 10.6 105 116-229 178-285 (364)
478 PRK06153 hypothetical protein; 81.5 30 0.00064 31.8 11.5 82 116-206 172-277 (393)
479 PTZ00354 alcohol dehydrogenase 81.5 21 0.00046 31.1 10.7 99 117-228 138-239 (334)
480 PRK09242 tropinone reductase; 81.5 14 0.00031 31.1 9.3 85 119-204 8-97 (257)
481 PRK07889 enoyl-(acyl carrier p 81.4 32 0.00068 29.2 11.4 80 119-203 6-93 (256)
482 PRK07109 short chain dehydroge 81.3 21 0.00046 31.8 10.7 83 119-204 7-94 (334)
483 PRK05854 short chain dehydroge 81.3 15 0.00033 32.3 9.7 84 119-203 13-101 (313)
484 cd01484 E1-2_like Ubiquitin ac 81.2 18 0.00039 30.8 9.6 87 122-215 1-111 (234)
485 PF01488 Shikimate_DH: Shikima 81.2 6.9 0.00015 30.0 6.5 79 115-207 7-87 (135)
486 PRK05597 molybdopterin biosynt 81.2 19 0.0004 32.7 10.3 80 119-204 27-127 (355)
487 cd08245 CAD Cinnamyl alcohol d 81.1 21 0.00045 31.3 10.5 96 116-228 159-255 (330)
488 PF13460 NAD_binding_10: NADH( 81.1 25 0.00055 27.8 11.7 62 128-204 5-69 (183)
489 PRK05225 ketol-acid reductoiso 80.9 6.8 0.00015 36.7 7.3 92 116-228 32-130 (487)
490 PF11899 DUF3419: Protein of u 80.9 4.1 8.8E-05 37.4 5.9 62 168-234 273-339 (380)
491 cd05284 arabinose_DH_like D-ar 80.8 17 0.00037 32.0 9.9 100 117-228 165-265 (340)
492 PRK08328 hypothetical protein; 80.7 24 0.00052 29.8 10.3 80 119-204 26-127 (231)
493 cd08256 Zn_ADH2 Alcohol dehydr 80.6 25 0.00055 31.2 11.0 103 116-229 171-274 (350)
494 cd01483 E1_enzyme_family Super 80.4 24 0.00052 27.1 10.0 77 122-205 1-99 (143)
495 cd01487 E1_ThiF_like E1_ThiF_l 80.4 29 0.00062 27.9 11.1 77 122-204 1-97 (174)
496 PRK15116 sulfur acceptor prote 80.3 34 0.00075 29.7 11.2 82 118-204 28-130 (268)
497 PRK07582 cystathionine gamma-l 80.3 45 0.00098 30.2 12.9 118 105-232 51-172 (366)
498 PRK06079 enoyl-(acyl carrier p 80.2 23 0.00051 29.9 10.2 80 119-203 6-91 (252)
499 PRK08265 short chain dehydroge 80.2 22 0.00047 30.2 10.0 79 119-203 5-88 (261)
500 PRK05808 3-hydroxybutyryl-CoA 80.1 26 0.00055 30.4 10.5 92 122-226 5-115 (282)
No 1
>PLN02476 O-methyltransferase
Probab=100.00 E-value=1.5e-43 Score=304.52 Aligned_cols=269 Identities=70% Similarity=1.053 Sum_probs=231.4
Q ss_pred CcccchhhhhhheeeccchhhhhhccchhhHh--hhcCCCcccccCCCCCcccccccccccccccccCCCChhHHHHHHh
Q 024097 1 MASSLVANRFAFVLLKTEKTVAKFHSFPLSER--LRLRPCKFKTKNQFTTNCCVSSAHDEKYSNKQVISVTPPLYDYILR 78 (272)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~y~~~ 78 (272)
|++++..+||-++.-.+..+.-..+.++--+. +.+.+|.. .+ ..++....++.+++|..++.....+.+++|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Y~~~ 77 (278)
T PLN02476 1 MSTGLALNRCSFSVCRTATTLLNRPTVSVCRSLKFSRRLIGN-CS--IAPADPVVVANDDKYGNKQVISLTPRLYDYVLS 77 (278)
T ss_pred CcchhhhhhhhhhhhhhhheeecCCccchhhhhHHHHHhhcC-CC--CCCCCceEEecchhhcccCcccchHHHHHHHHh
Confidence 67788888988665555433333333333333 33333222 12 233457888999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHH
Q 024097 79 NVREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE 158 (272)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~ 158 (272)
..++++.+.++++++.....+.|.+++.+++++..++...++++|||||||+|++++++++.++++++|+++|.+++..+
T Consensus 78 ~~~~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~ 157 (278)
T PLN02476 78 NVREPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLE 157 (278)
T ss_pred cCCCCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHH
Confidence 88889999999999988767788999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC
Q 024097 159 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD 238 (272)
Q Consensus 159 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~ 238 (272)
.|+++++++|+.++++++.||+.+.++.+..++..++||+||+|+++..|..+++.+.++|+|||+|++||++|+|.+.+
T Consensus 158 ~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d 237 (278)
T PLN02476 158 VAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVAD 237 (278)
T ss_pred HHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccC
Confidence 99999999999999999999999998876544334689999999999999999999999999999999999999999999
Q ss_pred CcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097 239 QMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272 (272)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G 272 (272)
+...+..+.++|+||+++.+||+++++++|+|||
T Consensus 238 ~~~~d~~t~~ir~fn~~v~~d~~~~~~llPigDG 271 (278)
T PLN02476 238 PLVNDAKTISIRNFNKKLMDDKRVSISMVPIGDG 271 (278)
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEEEEeCCe
Confidence 8777778899999999999999999999999998
No 2
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=100.00 E-value=2.3e-39 Score=268.90 Aligned_cols=193 Identities=42% Similarity=0.735 Sum_probs=177.6
Q ss_pred cCChHHHHHHHHHHHcCC-CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHH
Q 024097 80 VREPEILRQLREETAGMR-GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE 158 (272)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~ 158 (272)
..+++.+.++++.+.... .+.|.+++.++++|..++...++++||||||++|++++++++.++++++|+++|++++..+
T Consensus 5 ~~~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~ 84 (205)
T PF01596_consen 5 VREPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE 84 (205)
T ss_dssp TCSTHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH
T ss_pred cCCCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH
Confidence 457899999999987765 5567899999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC
Q 024097 159 VAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD 238 (272)
Q Consensus 159 ~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~ 238 (272)
.|+++++++|+.++|+++.||+.+.++.+...+..++||+||+|+++..|..+++.+.++|+|||+|++||++|.|.|.+
T Consensus 85 ~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~ 164 (205)
T PF01596_consen 85 IARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVAD 164 (205)
T ss_dssp HHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGS
T ss_pred HHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecC
Confidence 99999999999999999999999999888665445689999999999999999999999999999999999999999999
Q ss_pred CcCCCHhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097 239 QMVNDAKTISIRNFNKNLMEDERVSISMKEVQDA 272 (272)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G 272 (272)
|..++..+.++++||+++.+||+|+++++|+|||
T Consensus 165 ~~~~~~~~~~ir~f~~~i~~d~~~~~~llpigdG 198 (205)
T PF01596_consen 165 PDDEDPKTVAIREFNEYIANDPRFETVLLPIGDG 198 (205)
T ss_dssp TTGGSHHHHHHHHHHHHHHH-TTEEEEEECSTTE
T ss_pred ccchhhhHHHHHHHHHHHHhCCCeeEEEEEeCCe
Confidence 9777888889999999999999999999999998
No 3
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-37 Score=255.60 Aligned_cols=213 Identities=50% Similarity=0.826 Sum_probs=198.2
Q ss_pred ccccccCCCChhHHHHHHhc---cCChHHHHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHH
Q 024097 60 YSNKQVISVTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSS 134 (272)
Q Consensus 60 ~~~~~~~~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~ 134 (272)
+..++....++.+++|+... .+|++.+.++++.+... +.+.|.++++.++|+..+++..+++++||||..||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySa 88 (237)
T KOG1663|consen 9 VPDKRLILSDPRLYQYILETTHYPREPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSA 88 (237)
T ss_pred CcchhcccccchhhhhhhhcccccCCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHH
Confidence 33444677788889998776 67899999999999777 57899999999999999999999999999999999999
Q ss_pred HHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHH
Q 024097 135 LAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFEL 214 (272)
Q Consensus 135 ~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~ 214 (272)
+.+|.++|++|+|+++|++++..+.+.+..+.+|..++|+++++++.+.++++...++.++||++|+|+++..|..++++
T Consensus 89 L~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~ 168 (237)
T KOG1663|consen 89 LAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDFAFVDADKDNYSNYYER 168 (237)
T ss_pred HHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeEEEEccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred HHccCCCCcEEEEeCCCCCCcccCCcCCCH-hhHHHH---HHHHHhhhCCCeEEEEeecCCC
Q 024097 215 LLQLIRVGGIIVIDNVLWHGKVADQMVNDA-KTISIR---NFNKNLMEDERVSISMKEVQDA 272 (272)
Q Consensus 215 ~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~~~~lp~~~G 272 (272)
+.+++|+||+|++||++|+|.|++|+.... .+..++ +||++|..||+++.+++|+|||
T Consensus 169 ~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~~r~~~~~n~~l~~D~rV~~s~~~igdG 230 (237)
T KOG1663|consen 169 LLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRSIREALNLNKKLARDPRVYISLLPIGDG 230 (237)
T ss_pred HHhhcccccEEEEeccccCCcccCcccCCCcchhhhhhhhhhhhHhccCcceeeEeeeccCc
Confidence 999999999999999999999988876544 788899 9999999999999999999998
No 4
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=6.2e-37 Score=260.65 Aligned_cols=206 Identities=39% Similarity=0.638 Sum_probs=184.2
Q ss_pred CCChhHHHHHHhc---cCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC
Q 024097 67 SVTPPLYDYILRN---VREPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE 143 (272)
Q Consensus 67 ~~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~ 143 (272)
...+.+++|+.+. .++++.+.++++.+.....+.|.+++.++++|..++...++++|||||+++|++++++++.+++
T Consensus 24 ~~~~~i~~Y~~~~~~~~~~~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~ 103 (247)
T PLN02589 24 LQSDALYQYILETSVYPREPESMKELRELTAKHPWNIMTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPE 103 (247)
T ss_pred cCcHHHHHHHHHhccCCCCCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCC
Confidence 3468899999763 3578899999999887766678889999999999999999999999999999999999999988
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CCCceEEEEEcCCccchHHHHHHHHccCCCC
Q 024097 144 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222 (272)
Q Consensus 144 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg 222 (272)
+++|+++|.+++..+.|+++++++|+.++|+++.|++.+.++.+...+ ..++||+||+|+++..|..+++.+.++|+||
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG 183 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCC
Confidence 899999999999999999999999999999999999999998875432 1368999999999999999999999999999
Q ss_pred cEEEEeCCCCCCcccCCcCCC-Hh-----hHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097 223 GIIVIDNVLWHGKVADQMVND-AK-----TISIRNFNKNLMEDERVSISMKEVQDA 272 (272)
Q Consensus 223 G~lvi~d~~~~g~~~~~~~~~-~~-----~~~~~~~~~~l~~~~~~~~~~lp~~~G 272 (272)
|+|++||++|+|.|.++...+ .. ..++|+||+.+.+||+++++++|+|||
T Consensus 184 Gviv~DNvl~~G~v~~~~~~~~~~~~~~~~~~ir~fn~~v~~d~~~~~~llPigDG 239 (247)
T PLN02589 184 GVIGYDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDG 239 (247)
T ss_pred eEEEEcCCCCCCcccCccccchhhhHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCc
Confidence 999999999999998874322 11 236899999999999999999999998
No 5
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=100.00 E-value=3.8e-36 Score=249.47 Aligned_cols=201 Identities=38% Similarity=0.649 Sum_probs=175.6
Q ss_pred CCCChhHHHHHHhccC--ChHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC
Q 024097 66 ISVTPPLYDYILRNVR--EPEILRQLREETAGMRGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE 143 (272)
Q Consensus 66 ~~~~~~l~~y~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~ 143 (272)
..+.+.|.+|+.+... .+..+.++.+..... +.++ +.++++++|..++...++++|||||++.|++++|+|..++.
T Consensus 6 ~~~~~~l~~y~~~~~~~~~~~~~~~~~e~a~~~-~~pi-~~~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~ 83 (219)
T COG4122 6 PNMDEDLYDYLEALIPGEPPALLAELEEFAREN-GVPI-IDPETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPD 83 (219)
T ss_pred ccchHHHHHHHHhhcccCCchHHHHHHHHhHhc-CCCC-CChhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCC
Confidence 3466789999999864 345556665555443 3333 33999999999999999999999999999999999999997
Q ss_pred CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCC
Q 024097 144 SGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222 (272)
Q Consensus 144 ~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg 222 (272)
++++|+||+++++++.|+++++++|+.++++++. +|+.+.+... ..++||+||+|+++..|+++++.+.++|+||
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~----~~~~fDliFIDadK~~yp~~le~~~~lLr~G 159 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL----LDGSFDLVFIDADKADYPEYLERALPLLRPG 159 (219)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc----cCCCccEEEEeCChhhCHHHHHHHHHHhCCC
Confidence 8899999999999999999999999999999999 6999887752 1589999999999999999999999999999
Q ss_pred cEEEEeCCCCCCcccCCcCCCHhhH--HHHHHHHHhhhCCCeEEEEeecCCC
Q 024097 223 GIIVIDNVLWHGKVADQMVNDAKTI--SIRNFNKNLMEDERVSISMKEVQDA 272 (272)
Q Consensus 223 G~lvi~d~~~~g~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~lp~~~G 272 (272)
|++++||++|+|.+.++..++..+. .+++|++++.++|+++++++|+|||
T Consensus 160 Gliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~lP~gDG 211 (219)
T COG4122 160 GLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTVLLPLGDG 211 (219)
T ss_pred cEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeEEEecCCc
Confidence 9999999999999998865555444 5999999999999999999999998
No 6
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=100.00 E-value=1e-35 Score=253.20 Aligned_cols=205 Identities=41% Similarity=0.646 Sum_probs=182.5
Q ss_pred CChhHHHHHHhc---cCChHHHHHHHHHHHcC--CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC
Q 024097 68 VTPPLYDYILRN---VREPEILRQLREETAGM--RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP 142 (272)
Q Consensus 68 ~~~~l~~y~~~~---~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~ 142 (272)
..+.+++|+.+. .++++.+.++++++... ..+.|.+.+.+++++..++...++++|||||||+|+++++++..++
T Consensus 12 ~~~~~~~y~~~~~~~~~~~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~ 91 (234)
T PLN02781 12 KSEALKQYIMETSAYPREHELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALP 91 (234)
T ss_pred CcHHHHHHHHHhccCCCCCHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCC
Confidence 356899999764 46889999999998765 2356788999999999999999999999999999999999999988
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCC
Q 024097 143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222 (272)
Q Consensus 143 ~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg 222 (272)
++++|+++|+++++++.|+++++++++.++++++.+|+.+.++.+...++.++||+||+|+.+..+..+++.+.++|+||
T Consensus 92 ~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 92 EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999998999999999998877654333468999999999999999999999999999
Q ss_pred cEEEEeCCCCCCcccCCcCCC-----HhhHHHHHHHHHhhhCCCeEEEEeecCCC
Q 024097 223 GIIVIDNVLWHGKVADQMVND-----AKTISIRNFNKNLMEDERVSISMKEVQDA 272 (272)
Q Consensus 223 G~lvi~d~~~~g~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~lp~~~G 272 (272)
|+|++||++|.|.+.++.... ....++++||+++.+||+++++++|+|||
T Consensus 172 G~ii~dn~l~~G~v~~~~~~~~~~~~~~~~~ir~~~~~i~~~~~~~~~~lp~gdG 226 (234)
T PLN02781 172 GIIAFDNTLWFGFVAQEEDEVPEHMRAYRKALLEFNKLLASDPRVEISQISIGDG 226 (234)
T ss_pred eEEEEEcCCcCCeecCcccccchhhhHHHHHHHHHHHHHhhCCCeEEEEEEeCCc
Confidence 999999999999998875321 23578999999999999999999999998
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.76 E-value=3.6e-18 Score=128.66 Aligned_cols=104 Identities=22% Similarity=0.393 Sum_probs=87.6
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
++.+|||||||+|..+.++++..+ +.+|+++|+++++++.|++++...+..++++++++|+ ...... .++||+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~-----~~~~D~ 73 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF-----LEPFDL 73 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT-----SSCEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc-----CCCCCE
Confidence 467999999999999999999655 7899999999999999999997788888999999999 322222 468999
Q ss_pred EEEcC-Ccc------chHHHHHHHHccCCCCcEEEEeC
Q 024097 199 AFVDA-EKR------MYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 199 V~~d~-~~~------~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
|++.. ... ....+++.+.+.|+|||+++++.
T Consensus 74 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99988 322 24567999999999999999874
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.71 E-value=9.5e-17 Score=135.52 Aligned_cols=118 Identities=19% Similarity=0.260 Sum_probs=100.1
Q ss_pred HHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHH
Q 024097 108 AQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKAL 187 (272)
Q Consensus 108 ~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 187 (272)
.+.+.......++.+|||+|||||-.++.+++..+ .++|+++|+|+.|++.|++.....+..+ ++|+++|+.+. |.
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-Pf- 115 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-PF- 115 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-CC-
Confidence 33344444444789999999999999999999998 8999999999999999999999888876 99999999764 32
Q ss_pred HhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 188 ILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 188 ~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
++++||+|.+... ..+....|+++.|+|||||.+++-+...+
T Consensus 116 ----~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 116 ----PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred ----CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 2789999998765 55788999999999999999999877654
No 9
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.71 E-value=8.1e-16 Score=123.74 Aligned_cols=120 Identities=25% Similarity=0.352 Sum_probs=103.8
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
..++.-.+....+...++.+++|||||||..++.++.. .+.++|+++|.++++++..++|.++.+. ++++++.|++.+
T Consensus 18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~-~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~ 95 (187)
T COG2242 18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALA-GPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPE 95 (187)
T ss_pred cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHh-CCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchH
Confidence 44555555556667778899999999999999999954 4589999999999999999999999995 579999999999
Q ss_pred HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
.++.+ .+||.||+.+. ......++.+...|||||.||++-+.
T Consensus 96 ~L~~~------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 96 ALPDL------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred hhcCC------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 88753 37999999998 88899999999999999999998554
No 10
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.70 E-value=6.5e-16 Score=128.48 Aligned_cols=113 Identities=21% Similarity=0.421 Sum_probs=96.5
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
..+...++.+|||+|||+|..++.+++..++.++|+++|+++++++.++++++..++.++++++.+|+.+.++..
T Consensus 34 ~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~----- 108 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI----- 108 (198)
T ss_pred HHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc-----
Confidence 344556778999999999999999998776568999999999999999999999886668999999998765543
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
.+.||.||+.........+++.+.++|+|||.++++.+
T Consensus 109 ~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 109 NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence 46899999987767778899999999999999998644
No 11
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.70 E-value=5e-16 Score=118.74 Aligned_cols=111 Identities=24% Similarity=0.383 Sum_probs=92.4
Q ss_pred HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 190 (272)
+...+...++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.++++++..+.. +++++.+|+.+..+..
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 85 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS--- 85 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh---
Confidence 33344445667999999999999999999876 589999999999999999999888765 5899999876533322
Q ss_pred CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.++||.|++.........+++.+.+.|+|||.++++
T Consensus 86 --~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 86 --LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred --cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence 368999999887667778999999999999999986
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.69 E-value=1.3e-16 Score=135.66 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=84.8
Q ss_pred HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 190 (272)
+..++...++.+|||+|||||..+..+++..++.++|+++|+|++|++.|++++...+.. +++++++|+.+. +..
T Consensus 39 ~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~~--- 113 (233)
T PF01209_consen 39 LIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PFP--- 113 (233)
T ss_dssp HHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S----
T ss_pred HHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cCC---
Confidence 333445667889999999999999999998877889999999999999999999988776 799999999774 321
Q ss_pred CCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 191 ~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
+++||.|++... ..+....+++++++|||||.+++-+...+
T Consensus 114 --d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 114 --DNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp --TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred --CCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 689999998765 44678899999999999999998766544
No 13
>PRK04457 spermidine synthase; Provisional
Probab=99.69 E-value=1.7e-15 Score=131.11 Aligned_cols=118 Identities=19% Similarity=0.244 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (272)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 184 (272)
+....++..+....++++|||||||+|..+.++++..| +.+++++|+++++++.|++++...+..++++++.+|+.+.+
T Consensus 52 ~y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l 130 (262)
T PRK04457 52 AYTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYI 130 (262)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHH
Confidence 34444444444445678999999999999999999876 78999999999999999999865555568999999999877
Q ss_pred HHHHhCCCCCceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097 185 KALILNGEASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 185 ~~~~~~~~~~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
... .++||+|++|.... ...++++.+.+.|+|||+++++
T Consensus 131 ~~~-----~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 131 AVH-----RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HhC-----CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence 653 46899999986422 1368999999999999999996
No 14
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.68 E-value=4.8e-16 Score=130.92 Aligned_cols=151 Identities=21% Similarity=0.320 Sum_probs=109.5
Q ss_pred CChhHHHHHHhccCChHHHHHHHHHHHcC-----CCCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC
Q 024097 68 VTPPLYDYILRNVREPEILRQLREETAGM-----RGSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP 142 (272)
Q Consensus 68 ~~~~l~~y~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~ 142 (272)
.++++.+.+.+..++.-+........... ........|.....+..++...++.+|||||||+|+.+..+++..+
T Consensus 21 ~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~ 100 (215)
T TIGR00080 21 KSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVG 100 (215)
T ss_pred CCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhC
Confidence 45667777776555432222111111111 1112234566666676777778889999999999999999999876
Q ss_pred CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCC
Q 024097 143 ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVG 222 (272)
Q Consensus 143 ~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg 222 (272)
+.++|+++|+++++++.|+++++..++. +++++.+|+.+..+. ..+||+|+++...... .+.+.+.|+||
T Consensus 101 ~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~~------~~~fD~Ii~~~~~~~~---~~~~~~~L~~g 170 (215)
T TIGR00080 101 RDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWEP------LAPYDRIYVTAAGPKI---PEALIDQLKEG 170 (215)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCcc------cCCCCEEEEcCCcccc---cHHHHHhcCcC
Confidence 5688999999999999999999998884 699999999764332 3689999998765543 45677889999
Q ss_pred cEEEEe
Q 024097 223 GIIVID 228 (272)
Q Consensus 223 G~lvi~ 228 (272)
|++++.
T Consensus 171 G~lv~~ 176 (215)
T TIGR00080 171 GILVMP 176 (215)
T ss_pred cEEEEE
Confidence 999985
No 15
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.68 E-value=2.4e-15 Score=123.97 Aligned_cols=118 Identities=25% Similarity=0.319 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
+.+.....+...+...++.+|||||||+|..+..+++..+ +++|+++|+++++++.++++++..++. +++++.+|+..
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~ 92 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPI 92 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchh
Confidence 3444445554555556788999999999999999998865 689999999999999999999888775 59999998743
Q ss_pred HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
. + .++||+|+++........+++.+.+.|+|||++++..+
T Consensus 93 ~---~-----~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 93 E---L-----PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred h---c-----CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence 1 1 36899999987766778889999999999999999654
No 16
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.68 E-value=1.6e-15 Score=124.20 Aligned_cols=102 Identities=23% Similarity=0.388 Sum_probs=87.8
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++.+|||+|||+|..+..++...+ .++|+++|.++++++.++++.++.++. +++++++|+.+... .++|
T Consensus 40 ~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~-------~~~f 110 (181)
T TIGR00138 40 YLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQH-------EEQF 110 (181)
T ss_pred hcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccc-------cCCc
Confidence 34578999999999999999987654 689999999999999999999988876 59999999977421 4789
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|+|++++ ..++..+++.+.++|+|||.+++.
T Consensus 111 D~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 111 DVITSRA-LASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred cEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence 9999987 566778899999999999999975
No 17
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.68 E-value=6.4e-16 Score=129.20 Aligned_cols=118 Identities=22% Similarity=0.300 Sum_probs=95.5
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (272)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 183 (272)
.+.....+...+...++.+|||||||+|+.+..+++.+++.++|+++|+++++++.|+++++..+..++++++.+|+.+.
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~ 136 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRG 136 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccC
Confidence 34444555555555677899999999999999999988666899999999999999999999888877899999999764
Q ss_pred HHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 184 LKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
++. ..+||.|+++...... .+.+.+.|+|||.|++...
T Consensus 137 ~~~------~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 137 LEK------HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred Ccc------CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEEEc
Confidence 432 3689999998775443 3577899999999998643
No 18
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.67 E-value=8.5e-16 Score=129.08 Aligned_cols=118 Identities=24% Similarity=0.351 Sum_probs=98.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
....|.....+...+...++.+|||||||+|+.+..+++.+++.++|+++|+++++++.++++++..+.. +++++.+|+
T Consensus 58 ~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~ 136 (212)
T PRK13942 58 TISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDG 136 (212)
T ss_pred EeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCc
Confidence 3567888888888888888999999999999999999998776789999999999999999999988875 699999998
Q ss_pred hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+..+. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 137 ~~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 137 TLGYEE------NAPYDRIYVTAAGPDI---PKPLIEQLKDGGIMVIP 175 (212)
T ss_pred ccCCCc------CCCcCEEEECCCcccc---hHHHHHhhCCCcEEEEE
Confidence 654321 4789999998765544 34667789999999985
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.66 E-value=1.9e-15 Score=124.19 Aligned_cols=101 Identities=20% Similarity=0.367 Sum_probs=87.8
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
++.+|||||||+|..++.+++..+ +++|+++|+++++++.|+++.+..++.+ ++++++|+.+... .++||+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~-------~~~fDl 115 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ-------EEKFDV 115 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC-------CCCccE
Confidence 378999999999999999998765 7899999999999999999999999865 9999999976321 368999
Q ss_pred EEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
|++.. ......+++.+.++|+|||++++-.
T Consensus 116 V~~~~-~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 116 VTSRA-VASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred EEEcc-ccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 99876 3567789999999999999999863
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.66 E-value=8.9e-16 Score=122.25 Aligned_cols=109 Identities=17% Similarity=0.310 Sum_probs=91.0
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++.+|||+|||+|..+..+++.+.++++++|+|+++++++.|++.++..+.. +++|+++|+.+ ++... .++||
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~----~~~~D 75 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL----EEKFD 75 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS----STTEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc----CCCee
Confidence 35679999999999999999966555889999999999999999999999987 79999999988 43210 26899
Q ss_pred EEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
+|++... ..+....++.+.++|++||++++.+..+
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~ 113 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNH 113 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEH
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECCh
Confidence 9999865 3445678999999999999999987763
No 21
>PLN03075 nicotianamine synthase; Provisional
Probab=99.65 E-value=1.3e-15 Score=132.26 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccC-HHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH-hCCCCCEEEEEcChh
Q 024097 104 SPDQAQLLAMLVQILGAQRCIEVGVYTG-YSSLAIALVLPESGCLVACERDARSLEVAKKYYER-AGVSHKVKIKHGLAA 181 (272)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G-~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~ 181 (272)
.+..++++..+... ++++|+|||||.| ++++.++....++++++++|+++++++.|++.++. .++.++++|..+|+.
T Consensus 109 ~~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~ 187 (296)
T PLN03075 109 SKLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVM 187 (296)
T ss_pred HHHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchh
Confidence 44555556555554 8899999999955 55666665555588999999999999999999964 788889999999998
Q ss_pred HHHHHHHhCCCCCceEEEEEcC----CccchHHHHHHHHccCCCCcEEEEeC
Q 024097 182 DSLKALILNGEASSYDFAFVDA----EKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~----~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
+..+. .+.||+||++. .+.....+++++.+.|+|||++++-.
T Consensus 188 ~~~~~------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 188 DVTES------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hcccc------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 74322 36899999985 24778899999999999999999976
No 22
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.64 E-value=2.3e-15 Score=122.20 Aligned_cols=112 Identities=21% Similarity=0.355 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186 (272)
Q Consensus 107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 186 (272)
...+|...+...+..+|||+|||+|..++.+++..+ ..+|+++|+++.+++.++++++.+++.+ ++++.+|..+..+
T Consensus 19 ~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~- 95 (170)
T PF05175_consen 19 GTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP- 95 (170)
T ss_dssp HHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC-
T ss_pred HHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc-
Confidence 334666666666888999999999999999999876 6689999999999999999999999887 9999999877433
Q ss_pred HHhCCCCCceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEE
Q 024097 187 LILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 187 ~~~~~~~~~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi 227 (272)
.++||+|+++.+.. ....+++.+.++|+|||.+++
T Consensus 96 ------~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l 138 (170)
T PF05175_consen 96 ------DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL 138 (170)
T ss_dssp ------TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence 47999999987622 256788889999999999865
No 23
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.4e-15 Score=126.13 Aligned_cols=119 Identities=18% Similarity=0.308 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+.|....++.......++.+|+|.|+|+|..+.+|+..+.+.|+|+++|+.+++++.|++|++..++.+++++..+|..
T Consensus 77 iIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~ 156 (256)
T COG2519 77 IIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR 156 (256)
T ss_pred eecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc
Confidence 57788889999999999999999999999999999999988889999999999999999999999999988999999998
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
+... ++.||.||+|.+.++ .+++.+.+.|+|||.+++-.
T Consensus 157 ~~~~-------~~~vDav~LDmp~PW--~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 157 EGID-------EEDVDAVFLDLPDPW--NVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred cccc-------ccccCEEEEcCCChH--HHHHHHHHHhCCCcEEEEEc
Confidence 7554 459999999976444 58999999999999999853
No 24
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.64 E-value=8.9e-15 Score=121.44 Aligned_cols=121 Identities=23% Similarity=0.366 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
...+....++...+...++.+|||+|||+|..+..+++..+ +++|+++|+++++++.++++++..+.. +++++.+|+.
T Consensus 23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~ 100 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAP 100 (196)
T ss_pred CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchH
Confidence 45566666666666767788999999999999999987655 689999999999999999999988875 6999999997
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
+.++.+ ...+|.++++.. .....+++.+.++|+|||.+++...
T Consensus 101 ~~~~~~-----~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 101 ECLAQL-----APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHhhC-----CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence 654433 245688888754 3457889999999999999999754
No 25
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=3.7e-15 Score=128.17 Aligned_cols=114 Identities=16% Similarity=0.224 Sum_probs=99.4
Q ss_pred HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (272)
Q Consensus 110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 189 (272)
.+...+...++++|||||||.|..++++|+.. +.+|+|+++|+++.+.+++.++..|+..+++++..|..+.
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~------ 134 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF------ 134 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc------
Confidence 34444566789999999999999999999987 5899999999999999999999999998999999888764
Q ss_pred CCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097 190 NGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (272)
Q Consensus 190 ~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g 234 (272)
.++||-|++-+. .+.+..||+.+.++|+|||.++++.+....
T Consensus 135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 366999997653 567999999999999999999999887554
No 26
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.62 E-value=3.8e-15 Score=124.24 Aligned_cols=120 Identities=19% Similarity=0.276 Sum_probs=95.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+++....+...+.. ++.+|||||||+|..+..+++..+ ..+|+++|+++++++.+++++...++ .+++++++|+.
T Consensus 25 ~~~~~~~~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~ 100 (202)
T PRK00121 25 RLSPAPLDWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAV 100 (202)
T ss_pred hhcCCCCCHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHH
Confidence 455666666666655 668999999999999999998876 67999999999999999999988777 46999999994
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+.++... .+++||.|++..... ....+++.+.++|+|||++++.
T Consensus 101 ~~l~~~~---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 101 EVLLDMF---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHHHHHc---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence 4444211 146899999864311 1467899999999999999984
No 27
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=6.2e-15 Score=127.31 Aligned_cols=103 Identities=21% Similarity=0.316 Sum_probs=87.7
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++.+|||+|||+|..+..+++. +.+|+++|+++++++.|+++.+..++.++++++++|+.+..+.. +++||
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~-----~~~fD 114 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL-----ETPVD 114 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc-----CCCCC
Confidence 35679999999999999999985 46999999999999999999998888778999999998754332 47899
Q ss_pred EEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097 198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|++... ..+...+++++.++|||||++++.
T Consensus 115 ~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 115 LILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred EEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence 9998765 345667899999999999999874
No 28
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.62 E-value=5.5e-15 Score=128.00 Aligned_cols=115 Identities=11% Similarity=0.086 Sum_probs=90.6
Q ss_pred HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH--hCCCCCEEEEEcChhHHHHHHHh
Q 024097 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER--AGVSHKVKIKHGLAADSLKALIL 189 (272)
Q Consensus 112 ~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~ 189 (272)
...+...++.+|||+|||+|..+..+++..++.++|+|+|+|++|++.|+++... .....+++++++|+.+. +.
T Consensus 66 ~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p~--- 141 (261)
T PLN02233 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-PF--- 141 (261)
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-CC---
Confidence 3344556778999999999999999998876568999999999999999876542 22234699999998653 21
Q ss_pred CCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 190 NGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 190 ~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
++++||+|++... ..+...+++++.++|||||.+++.+...
T Consensus 142 --~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 142 --DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred --CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 2578999998653 4457789999999999999999987654
No 29
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.62 E-value=2.9e-15 Score=130.11 Aligned_cols=114 Identities=16% Similarity=0.256 Sum_probs=88.1
Q ss_pred HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 190 (272)
+...+...++.+|||||||.|..+.++++.. +++|+|+.+|++..+.+++.+++.|+.+++++..+|..+.
T Consensus 54 ~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~------- 124 (273)
T PF02353_consen 54 LCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL------- 124 (273)
T ss_dssp HHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-------
Confidence 3334456788999999999999999999986 5899999999999999999999999999999999998764
Q ss_pred CCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 191 GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 191 ~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
+.+||.|++-.. ..++..+++.+.++|+|||.++++.+.....
T Consensus 125 --~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~ 172 (273)
T PF02353_consen 125 --PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDP 172 (273)
T ss_dssp ----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred --CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence 358999987543 4567899999999999999999987775543
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.61 E-value=9.9e-15 Score=124.07 Aligned_cols=115 Identities=18% Similarity=0.300 Sum_probs=93.0
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 188 (272)
+.+...+...++.+|||+|||+|..+..+++..++.++|+++|+++++++.++++++..+. ++++++.+|+.+.. +
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~--~- 110 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELP--F- 110 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCC--C-
Confidence 3334444556678999999999999999999876678999999999999999999887776 46999999986532 1
Q ss_pred hCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 189 LNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
..++||+|++... ..++..+++++.++|+|||.+++.+.
T Consensus 111 ---~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 111 ---DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred ---CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 1478999998654 34567889999999999999987654
No 31
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=7e-15 Score=120.84 Aligned_cols=117 Identities=26% Similarity=0.398 Sum_probs=99.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
.+....|.....+..++...++.+|||||||+||.+..+++... +|+++|+.++..+.|+++++..|..+ |.++++
T Consensus 52 gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~g 127 (209)
T COG2518 52 GQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLETLGYEN-VTVRHG 127 (209)
T ss_pred CceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEEC
Confidence 34466788888888999999999999999999999999999754 99999999999999999999999975 999999
Q ss_pred ChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 179 LAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 179 d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|...-.+. ..+||.|++.+.....++ .+.+.|++||++++-
T Consensus 128 DG~~G~~~------~aPyD~I~Vtaaa~~vP~---~Ll~QL~~gGrlv~P 168 (209)
T COG2518 128 DGSKGWPE------EAPYDRIIVTAAAPEVPE---ALLDQLKPGGRLVIP 168 (209)
T ss_pred CcccCCCC------CCCcCEEEEeeccCCCCH---HHHHhcccCCEEEEE
Confidence 99875543 489999999887555433 345678999999985
No 32
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.59 E-value=2.6e-14 Score=121.73 Aligned_cols=122 Identities=21% Similarity=0.276 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+.|....++...+...++.+|||.|+|+|.++.+|++.+.+.|+|+++|..++.++.|+++++..++.+++++.+.|..
T Consensus 23 IiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 23 IIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp ---HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred eeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 57889999999999999999999999999999999999998899999999999999999999999999989999999996
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccC-CCCcEEEEe
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLI-RVGGIIVID 228 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lL-kpgG~lvi~ 228 (272)
+.... ...+..+|.||+|.+.++. .+..+.+.| ++||.|++-
T Consensus 103 ~~g~~---~~~~~~~DavfLDlp~Pw~--~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 103 EEGFD---EELESDFDAVFLDLPDPWE--AIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp CG--S---TT-TTSEEEEEEESSSGGG--GHHHHHHHE-EEEEEEEEE
T ss_pred ccccc---ccccCcccEEEEeCCCHHH--HHHHHHHHHhcCCceEEEE
Confidence 42210 0113689999999876653 688888999 899999874
No 33
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.58 E-value=1e-14 Score=121.70 Aligned_cols=117 Identities=23% Similarity=0.377 Sum_probs=93.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
...|.....+..++...++.+|||||||+||.+..++..+++.++|+++|+++..++.|+++++..+.. +++++++|..
T Consensus 55 is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~ 133 (209)
T PF01135_consen 55 ISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGS 133 (209)
T ss_dssp E--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GG
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchh
Confidence 456777777778888889999999999999999999998877789999999999999999999999887 6999999987
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
...+. ..+||.|++.+.....+ ..+.+.|++||++|+-
T Consensus 134 ~g~~~------~apfD~I~v~~a~~~ip---~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 134 EGWPE------EAPFDRIIVTAAVPEIP---EALLEQLKPGGRLVAP 171 (209)
T ss_dssp GTTGG------G-SEEEEEESSBBSS-----HHHHHTEEEEEEEEEE
T ss_pred hcccc------CCCcCEEEEeeccchHH---HHHHHhcCCCcEEEEE
Confidence 75443 37899999988766543 3466779999999984
No 34
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.58 E-value=1.5e-14 Score=109.71 Aligned_cols=102 Identities=22% Similarity=0.400 Sum_probs=85.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
+.+|||+|||+|..++.+++.. ..+++++|+++..++.+++++...++.++++++++|..+..+.+ ..++||+|
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----~~~~~D~I 74 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----PDGKFDLI 74 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC----TTT-EEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc----cCceeEEE
Confidence 3589999999999999999885 47999999999999999999999998889999999998765332 25899999
Q ss_pred EEcCCcc-----------chHHHHHHHHccCCCCcEEEE
Q 024097 200 FVDAEKR-----------MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 200 ~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi 227 (272)
+.+.+.. .+..+++.+.++|+|||++++
T Consensus 75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 9987622 246789999999999999986
No 35
>PLN02244 tocopherol O-methyltransferase
Probab=99.58 E-value=2.1e-14 Score=128.95 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=89.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++.+|||||||+|..+..+++.. +++|+++|+++.+++.++++.+..++.++++++.+|+.+.. . .+++||
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~-----~~~~FD 188 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-F-----EDGQFD 188 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-C-----CCCCcc
Confidence 456899999999999999999876 47999999999999999999988888778999999987631 1 257999
Q ss_pred EEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
+|++... ..+...+++++.++|||||.+++.+..
T Consensus 189 ~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 189 LVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred EEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9998544 345678999999999999999997654
No 36
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.58 E-value=2e-14 Score=121.54 Aligned_cols=116 Identities=19% Similarity=0.294 Sum_probs=99.1
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186 (272)
Q Consensus 107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 186 (272)
.+-+|..++......+|||+|||+|..++.++++.+ ..++++||+++++.+.|+++++.+++.+|++++++|..+..+.
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 456777777777789999999999999999999876 4899999999999999999999999999999999999887665
Q ss_pred HHhCCCCCceEEEEEcCC---------------------ccchHHHHHHHHccCCCCcEEEE
Q 024097 187 LILNGEASSYDFAFVDAE---------------------KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 187 ~~~~~~~~~fDlV~~d~~---------------------~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
.. ..+||+|+++.+ .....++++.+.++|||||.+.+
T Consensus 111 ~~----~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~ 168 (248)
T COG4123 111 LV----FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF 168 (248)
T ss_pred cc----ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence 41 357999999865 01245678888899999999987
No 37
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.58 E-value=4.4e-14 Score=123.73 Aligned_cols=118 Identities=17% Similarity=0.245 Sum_probs=94.0
Q ss_pred CCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 103 VSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 103 ~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
..+++..++...+. ..++.+|||+|||+|..++.+++..+ +.+|+++|+|+.+++.|+++++..++.++++++++
T Consensus 101 pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~ 179 (284)
T TIGR03533 101 PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS 179 (284)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 45566666655443 23457999999999999999999876 68999999999999999999999998778999999
Q ss_pred ChhHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097 179 LAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 179 d~~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|+.+.++ .++||+|+++.+. ..+..++..+.++|+|||.++++
T Consensus 180 D~~~~~~-------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e 250 (284)
T TIGR03533 180 DLFAALP-------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE 250 (284)
T ss_pred chhhccC-------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9865332 3579999997541 01345678888999999999986
No 38
>PRK00811 spermidine synthase; Provisional
Probab=99.57 E-value=1.2e-13 Score=120.98 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=85.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--C--CCCEEEEEcChhHHHHHHHhCCCC
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V--SHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
.++++||+||||.|..+..+++.. ...+|+++|+++++++.|++.+...+ . ..+++++.+|+.+.+... .
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----~ 148 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----E 148 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----C
Confidence 467899999999999999998753 25699999999999999999887532 1 458999999998877542 4
Q ss_pred CceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
++||+|++|...+ ...++++.+.+.|+|||++++.
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 149 NSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 7899999986422 1367889999999999999974
No 39
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.57 E-value=4.1e-14 Score=118.85 Aligned_cols=114 Identities=23% Similarity=0.334 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
...|.....+..++...++.+|||||||+|+.+..+++.. ++++++|+++++++.+++++++.++.+ ++++.+|+.
T Consensus 61 ~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~ 136 (212)
T PRK00312 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGW 136 (212)
T ss_pred eCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcc
Confidence 4677777787777777888999999999999999888764 489999999999999999999888764 999999986
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+..+. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 137 ~~~~~------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~ 174 (212)
T PRK00312 137 KGWPA------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP 174 (212)
T ss_pred cCCCc------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence 53321 3689999998765543 45678899999999985
No 40
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.56 E-value=5e-14 Score=121.12 Aligned_cols=106 Identities=12% Similarity=0.215 Sum_probs=87.0
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
.++.+|||||||+|..+..+++.+ .++++|+++|+|+.|++.|++++...+...+++++++|+.+.. ...+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~ 126 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA--------IENA 126 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC--------CCCC
Confidence 356799999999999999998854 3478999999999999999999988887778999999986532 2458
Q ss_pred EEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 197 DlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
|+|++... ......+++++.+.|+|||.+++.+..
T Consensus 127 D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~ 166 (247)
T PRK15451 127 SMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF 166 (247)
T ss_pred CEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99887533 223467899999999999999998744
No 41
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.56 E-value=5.9e-14 Score=116.35 Aligned_cols=105 Identities=16% Similarity=0.250 Sum_probs=87.3
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
...+|||||||+|..+..+++..| +.+|+++|+++.+++.|++++...++. +++++++|+.+...... ..+++|.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~---~~~~~d~ 90 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF---PDGSLSK 90 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC---CCCceeE
Confidence 456999999999999999999876 789999999999999999999888886 79999999987654332 1358999
Q ss_pred EEEcCCccc-----------hHHHHHHHHccCCCCcEEEEe
Q 024097 199 AFVDAEKRM-----------YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 199 V~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|+++.+... ...+++.+.++|||||.|++.
T Consensus 91 v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 91 VFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred EEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 998754211 257899999999999999874
No 42
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.56 E-value=2.1e-14 Score=119.61 Aligned_cols=121 Identities=17% Similarity=0.305 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHhh---cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 102 QVSPDQAQLLAMLVQI---LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~---~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
.+.+....++...+.. ..+.+|||||||.|..+..+|+. +.+|+|+|+++++++.|+....+.++. +++.+.
T Consensus 39 ~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~ 113 (243)
T COG2227 39 KINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQA 113 (243)
T ss_pred eeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhh
Confidence 3444445555555543 57889999999999999999985 589999999999999999998887774 778877
Q ss_pred ChhHHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 179 LAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 179 d~~~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
++.+.... .++||+|++-.. .++...++..|.+++||||.+++..+..+
T Consensus 114 ~~edl~~~------~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 114 TVEDLASA------GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred hHHHHHhc------CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 77665432 379999997654 44567799999999999999999877633
No 43
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=7.1e-14 Score=123.60 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 103 VSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
..+.+..++...+.. .++.+|||+|||+|..++.++...+ ..+|+++|+|+.+++.|+++++..++.++++++++
T Consensus 113 pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~ 191 (307)
T PRK11805 113 PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIES 191 (307)
T ss_pred CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC
Confidence 445566665554431 1236899999999999999999876 68999999999999999999999988778999999
Q ss_pred ChhHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097 179 LAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 179 d~~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|+.+.++ .++||+|+++.+. ..+..+++.+.++|+|||.++++
T Consensus 192 D~~~~l~-------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 192 DLFAALP-------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred chhhhCC-------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9866432 3579999987531 11356678888999999999985
No 44
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.55 E-value=3.8e-14 Score=125.66 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=85.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
++.+|||||||+|..+..+++. +++|+|+|+++++++.|+++.+..+...+++++++++.+... . .++||+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-~-----~~~FD~ 201 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-E-----GRKFDA 201 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-c-----cCCCCE
Confidence 4569999999999999998863 579999999999999999887665555579999999866422 1 478999
Q ss_pred EEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
|++... ..+...+++.+.++|||||.+++..+.
T Consensus 202 Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 202 VLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 998654 345678999999999999999998654
No 45
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.54 E-value=1.2e-13 Score=118.16 Aligned_cols=106 Identities=8% Similarity=0.085 Sum_probs=87.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
++.+|||||||+|..+..+++.++ ++++++++|+++++++.|+++++..+...+++++++|+.+.. ...+|
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~d 124 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--------IKNAS 124 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--------CCCCC
Confidence 567999999999999999998753 478999999999999999999987766667999999997642 24588
Q ss_pred EEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
+|++... ..+...+++++.+.|+|||.+++.+..+
T Consensus 125 ~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 125 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred EEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 8876543 2234678999999999999999987654
No 46
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=5.9e-14 Score=116.63 Aligned_cols=100 Identities=13% Similarity=0.198 Sum_probs=81.4
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++.+|||+|||+|..+.++++. +.+|+++|+|+.+++.++++.+..++. ++++..+|..+.. + .++|
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~--~-----~~~f 96 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLT--F-----DGEY 96 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCC--c-----CCCc
Confidence 346689999999999999999975 469999999999999999998887775 4888888876531 1 3679
Q ss_pred EEEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097 197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 197 DlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
|+|++... ......+++.+.++|+|||++++
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99997644 22467889999999999998554
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.54 E-value=6.1e-14 Score=122.22 Aligned_cols=112 Identities=16% Similarity=0.299 Sum_probs=92.2
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
...++.+|||||||+|..+..+++..++.++|+++|+++++++.|+++....+.. +++++.+|+.+. +. .+++
T Consensus 74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~~-----~~~~ 146 (272)
T PRK11873 74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-PV-----ADNS 146 (272)
T ss_pred cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-CC-----CCCc
Confidence 4557889999999999999888887765679999999999999999999888875 699999988552 21 1468
Q ss_pred eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097 196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (272)
Q Consensus 196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g 234 (272)
||+|+++.. ..+....++++.++|||||.+++.++...+
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 999997754 335567899999999999999998876554
No 48
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.54 E-value=1.1e-13 Score=128.76 Aligned_cols=125 Identities=22% Similarity=0.288 Sum_probs=100.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+......++...+...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+.+ ++++++|+.
T Consensus 233 ~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~ 311 (444)
T PRK14902 233 TIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDAR 311 (444)
T ss_pred EEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcc
Confidence 3445556677777777778899999999999999999987557899999999999999999999999875 999999997
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
+....+ .++||+|++|++... ...+++.+.++|||||.++...+..
T Consensus 312 ~~~~~~-----~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 312 KVHEKF-----AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred cccchh-----cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 654333 368999999875210 2357888899999999999765543
No 49
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.54 E-value=4e-14 Score=119.77 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=87.8
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
++|||||||+|..+..+++..+ +.+++++|+++++++.++++++..++.++++++.+|..+.. . .++||+|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~--~-----~~~fD~I~ 72 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP--F-----PDTYDLVF 72 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC--C-----CCCCCEee
Confidence 4799999999999999999875 67999999999999999999999899889999999885431 1 36899998
Q ss_pred EcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 201 VDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 201 ~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
+... ..+...+++.+.++|+|||.+++.+..
T Consensus 73 ~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 73 GFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred hHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 6432 345678999999999999999998765
No 50
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=1.8e-13 Score=126.72 Aligned_cols=125 Identities=22% Similarity=0.248 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (272)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 184 (272)
....+++..++...++.+|||+|||+|+.+..+++..++.++|+++|+++.+++.+++++++.|+.+ ++++.+|+.+..
T Consensus 238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~ 316 (434)
T PRK14901 238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLL 316 (434)
T ss_pred CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcc
Confidence 3445556666666778999999999999999999987667899999999999999999999999874 999999987643
Q ss_pred HHHHhCCCCCceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 185 KALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 185 ~~~~~~~~~~~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
.... ...++||.|++|++... ...+++.+.++|||||.|+...+..
T Consensus 317 ~~~~--~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 317 ELKP--QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccc--cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2110 01368999999865210 3467888899999999999876543
No 51
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.53 E-value=3.1e-13 Score=124.83 Aligned_cols=125 Identities=19% Similarity=0.299 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+.....+++..++...++.+|||+|||+|+.|..+++.++++++|+++|+++.+++.+++++++.|+. +++++++|+.
T Consensus 220 ~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~ 298 (431)
T PRK14903 220 TVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAE 298 (431)
T ss_pred EEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 334455566666777778899999999999999999998876789999999999999999999999986 4999999987
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
+..... .++||.|++|++.. .+.+++..+.++|||||+++...+.+
T Consensus 299 ~l~~~~-----~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 299 RLTEYV-----QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred hhhhhh-----hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 643222 36899999987521 12456888899999999999876653
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.53 E-value=5.2e-14 Score=104.21 Aligned_cols=93 Identities=23% Similarity=0.330 Sum_probs=74.3
Q ss_pred EEEEcCccCHHHHHHHHHCCC--CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 123 CIEVGVYTGYSSLAIALVLPE--SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 123 VLEiG~G~G~~~~~la~~~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
|||+|||+|..+..+++.++. ..+++++|+++++++.++++....+. +++++++|+.+.. .. .++||+|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~-~~-----~~~~D~v~ 72 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLP-FS-----DGKFDLVV 72 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHH-HH-----SSSEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCc-cc-----CCCeeEEE
Confidence 799999999999999998732 37999999999999999999987666 6999999998753 33 57999999
Q ss_pred EcCC------ccchHHHHHHHHccCCCCc
Q 024097 201 VDAE------KRMYQEYFELLLQLIRVGG 223 (272)
Q Consensus 201 ~d~~------~~~~~~~l~~~~~lLkpgG 223 (272)
+... ......+++++.++|+|||
T Consensus 73 ~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 73 CSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp E-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred EcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 8432 3346788999999999998
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.53 E-value=1.2e-13 Score=124.79 Aligned_cols=112 Identities=10% Similarity=0.120 Sum_probs=88.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC--CCEEEEEcChhHHHHH
Q 024097 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAADSLKA 186 (272)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~ 186 (272)
+++...+......+|||+|||+|..++.+++..| ..+|+++|+|+.+++.|+++++.++.. .+++++.+|..+..+
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~- 295 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE- 295 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC-
Confidence 4444444444456999999999999999999876 789999999999999999999877653 368999888865321
Q ss_pred HHhCCCCCceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEEe
Q 024097 187 LILNGEASSYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 187 ~~~~~~~~~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.++||+|+++.+.. ....++..+.++|+|||.+.+.
T Consensus 296 ------~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 296 ------PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred ------CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence 35899999986632 1346788889999999999885
No 54
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.53 E-value=1e-13 Score=115.02 Aligned_cols=103 Identities=18% Similarity=0.238 Sum_probs=80.6
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
.+...++.+|||+|||+|..+.++++. +.+|+++|+++.+++.++++.+..++. +++..+|.... + + +
T Consensus 25 ~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~-----~ 92 (195)
T TIGR00477 25 AVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L-----N 92 (195)
T ss_pred HhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c-----c
Confidence 334456789999999999999999974 579999999999999999988877764 77777776432 1 1 3
Q ss_pred CceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
++||+|++... ......+++.+.++|+|||++++-
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57999987543 234568899999999999985553
No 55
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.52 E-value=7.2e-14 Score=120.66 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=80.6
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
...++.+|||||||+|..+..+++..+ +++|+|+|+|+.+++.|++. +++++++|+.+..+ .++
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~-------~~~ 89 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP-------KPD 89 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC-------CCC
Confidence 345678999999999999999999875 68999999999999998752 37889999865421 468
Q ss_pred eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
||+|++... ..+....++++.+.|||||.+++.
T Consensus 90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 999998764 345678899999999999999985
No 56
>PRK04266 fibrillarin; Provisional
Probab=99.52 E-value=5.3e-13 Score=112.91 Aligned_cols=109 Identities=12% Similarity=0.147 Sum_probs=85.2
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHhCCC
Q 024097 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILNGE 192 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~ 192 (272)
+...++.+|||+|||+|..+..+++..+ .++|+++|+++++++.+.++.+.. .++.++.+|+.+.. ..+
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l----- 138 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV----- 138 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-----
Confidence 5566788999999999999999999886 689999999999999887766542 35899999986421 111
Q ss_pred CCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 193 ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
.++||+|+++....+ ....++++.+.|||||.+++. +.|.
T Consensus 139 ~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~-v~~~ 179 (226)
T PRK04266 139 VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA-IKAR 179 (226)
T ss_pred cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE-Eecc
Confidence 356999998765432 234588999999999999996 5553
No 57
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=1.2e-13 Score=119.36 Aligned_cols=99 Identities=16% Similarity=0.249 Sum_probs=82.5
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
...++.+|||||||+|..+..+++..+ +++|+++|+++.+++.+++++ .+++++.+|+.+..+ .++
T Consensus 28 ~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~-------~~~ 93 (258)
T PRK01683 28 PLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP-------PQA 93 (258)
T ss_pred CCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC-------CCC
Confidence 445678999999999999999999876 679999999999999998764 258899999865422 368
Q ss_pred eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
||+|++... ..+...+++++.+.|+|||.+++.
T Consensus 94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999998765 335678899999999999999985
No 58
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.51 E-value=3.4e-14 Score=103.09 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=74.0
Q ss_pred EEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC
Q 024097 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203 (272)
Q Consensus 124 LEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~ 203 (272)
||+|||+|..+..+++. + ..+|+++|+++++++.++++... .++.+..+|+.+. +. .+++||+|++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~~-----~~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL-PF-----PDNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS-SS------TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC-cc-----cccccccccccc
Confidence 89999999999999997 3 68999999999999999987643 3466999998765 21 158999999875
Q ss_pred C---ccchHHHHHHHHccCCCCcEEEE
Q 024097 204 E---KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 204 ~---~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
. ..+...+++++.++|||||.++|
T Consensus 69 ~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 69 VLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 4 35678899999999999999986
No 59
>PRK01581 speE spermidine synthase; Validated
Probab=99.51 E-value=4.5e-13 Score=119.11 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=84.7
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHH-----HHhCC-CCCEEEEEcChhHHHHHHHhC
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYY-----ERAGV-SHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~-----~~~~~-~~~v~~~~~d~~~~~~~~~~~ 190 (272)
..++++||+||||+|+.+..+++. ++..+|+++|+++++++.|++.. .+..+ .+|++++.+|+.+.+...
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--- 223 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--- 223 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc---
Confidence 457889999999999988888875 33579999999999999999732 11122 468999999999987653
Q ss_pred CCCCceEEEEEcCCccc--------hHHHHHHHHccCCCCcEEEEe
Q 024097 191 GEASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 191 ~~~~~fDlV~~d~~~~~--------~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.++||+||+|...+. ..++++.+.+.|+|||++++.
T Consensus 224 --~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 224 --SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred --CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 468999999964221 256899999999999999886
No 60
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.50 E-value=3.5e-13 Score=118.21 Aligned_cols=118 Identities=18% Similarity=0.332 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHhh---cCC-CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097 104 SPDQAQLLAMLVQI---LGA-QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (272)
Q Consensus 104 ~~~~~~~l~~l~~~---~~~-~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 179 (272)
.+++..++...+.. .++ .+|||+|||+|..++.++...+ +.+|+++|+++++++.|+++++..++.++++++.+|
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d 173 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN 173 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence 45555555554432 223 6999999999999999999876 679999999999999999999998887779999999
Q ss_pred hhHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCcEEEEeC
Q 024097 180 AADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 180 ~~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
..+.++ ..+||+|+++.+. ..+..+++.+.++|+|||++++.-
T Consensus 174 ~~~~~~-------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 174 LFEPLA-------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred hhccCc-------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 876332 2489999987430 024567788889999999999863
No 61
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.50 E-value=7e-13 Score=108.45 Aligned_cols=108 Identities=12% Similarity=0.238 Sum_probs=86.6
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 188 (272)
.++...+...++++|||+|||+|..+..+++.. .+|+++|+++++++.++++++..+. +++++.+|..+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---- 79 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---- 79 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc----
Confidence 555565666777899999999999999999853 3899999999999999999987765 4889999986532
Q ss_pred hCCCCCceEEEEEcCCcc------------------------chHHHHHHHHccCCCCcEEEEeC
Q 024097 189 LNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~~~------------------------~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
.++||+|+++.+.. ....+++.+.++|+|||.+++-.
T Consensus 80 ----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 80 ----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred ----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence 35899999875421 03567888999999999998854
No 62
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.50 E-value=1.2e-12 Score=108.44 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=89.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
........++..+....++.+|||+|||+|..++.++... ..+|+++|+++++++.+++|++..+.. +++++.+|+.
T Consensus 36 ~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~ 112 (199)
T PRK10909 36 TTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNAL 112 (199)
T ss_pred CCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHH
Confidence 3334444455555444567899999999999999755443 369999999999999999999998875 6999999998
Q ss_pred HHHHHHHhCCCCCceEEEEEcCC-ccc-hHHHHHHHHc--cCCCCcEEEEeC
Q 024097 182 DSLKALILNGEASSYDFAFVDAE-KRM-YQEYFELLLQ--LIRVGGIIVIDN 229 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~-~~~-~~~~l~~~~~--lLkpgG~lvi~d 229 (272)
+.++.. .++||+||+|.+ ... ....++.+.+ +|+|+|++++..
T Consensus 113 ~~l~~~-----~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 113 SFLAQP-----GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred HHHhhc-----CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 765432 357999999998 333 4455555543 589999999874
No 63
>PRK08317 hypothetical protein; Provisional
Probab=99.49 E-value=7e-13 Score=112.59 Aligned_cols=118 Identities=21% Similarity=0.281 Sum_probs=92.5
Q ss_pred HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 190 (272)
+...+...++.+|||+|||+|..+..+++.+++.++++++|+++.+++.++++.. ....+++++.+|+.+.. +
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~~--~--- 83 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGLP--F--- 83 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccCC--C---
Confidence 3344555677899999999999999999987557899999999999999988732 33456899998875421 1
Q ss_pred CCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097 191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV 236 (272)
Q Consensus 191 ~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~ 236 (272)
..++||+|++... ..+...+++++.++|+|||.+++.+..|....
T Consensus 84 -~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 131 (241)
T PRK08317 84 -PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLV 131 (241)
T ss_pred -CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCcee
Confidence 1478999998754 34577899999999999999999887665543
No 64
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.49 E-value=4.1e-13 Score=119.03 Aligned_cols=116 Identities=24% Similarity=0.353 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
+.|.....+...+...++.+|||||||+|+.+..+++..+..++|+++|+++++++.|+++++..+.. ++.++++|+.+
T Consensus 64 ~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~ 142 (322)
T PRK13943 64 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYY 142 (322)
T ss_pred CcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhh
Confidence 34555555555555667789999999999999999998765578999999999999999999988874 69999999876
Q ss_pred HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+. .++||+|+++...... .+.+.+.|+|||.+++.
T Consensus 143 ~~~~------~~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 143 GVPE------FAPYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP 179 (322)
T ss_pred cccc------cCCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence 4432 3679999998764443 34567889999998874
No 65
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.49 E-value=5e-13 Score=117.38 Aligned_cols=104 Identities=21% Similarity=0.338 Sum_probs=86.2
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++++|||+|||+|..+..+++. + ..+|+++|+++.+++.|++++..+++.+++.+..++.... . .++||
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~---~-----~~~fD 227 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP---I-----EGKAD 227 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc---c-----CCCce
Confidence 36789999999999999888764 3 4689999999999999999999988877788877763221 1 46899
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
+|+++........++..+.++|+|||.+++..+.
T Consensus 228 lVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAEVIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 9999877666778899999999999999997654
No 66
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.48 E-value=5e-13 Score=124.23 Aligned_cols=123 Identities=18% Similarity=0.236 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+......+...++...++.+|||+|||+|..+..+++.++..++|+++|+++++++.+++++++.|+. +++++.+|+.
T Consensus 233 ~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~ 311 (445)
T PRK14904 233 SVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDAR 311 (445)
T ss_pred EEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccc
Confidence 334445555556666667889999999999999999988765689999999999999999999999986 5999999987
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
+..+ .++||.|++|.+.. ....++..+.++|+|||++++..+..
T Consensus 312 ~~~~-------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 312 SFSP-------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred cccc-------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 6432 46899999986421 12357888899999999999976543
No 67
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.48 E-value=3e-13 Score=117.29 Aligned_cols=109 Identities=11% Similarity=0.171 Sum_probs=86.5
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
.+...++.+|||||||+|..+..+++.. +++|+++|+++.+++.|++++.. .++++++.+|+.+. +. .+
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~~-----~~ 115 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-DF-----PE 115 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-CC-----CC
Confidence 3455677899999999999999998764 47999999999999999987643 35799999998642 11 14
Q ss_pred CceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 194 SSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 194 ~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
++||+|++... ..+...+++++.++|||||.+++.+....
T Consensus 116 ~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 116 NTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred CCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 78999997432 23567899999999999999999877543
No 68
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.48 E-value=1.6e-12 Score=113.23 Aligned_cols=105 Identities=17% Similarity=0.248 Sum_probs=85.5
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--C-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
.++++||+||||+|..+..+++..+ ..+++++|+++++++.+++++...+ . ..+++++.+|+.+.+... .+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-----~~ 144 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-----EN 144 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC-----CC
Confidence 4567999999999999998887643 5689999999999999999886542 1 347899999998877653 47
Q ss_pred ceEEEEEcCCcc-----c--hHHHHHHHHccCCCCcEEEEe
Q 024097 195 SYDFAFVDAEKR-----M--YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 195 ~fDlV~~d~~~~-----~--~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+||+|++|.... . ..++++.+.++|+|||++++.
T Consensus 145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 999999987521 1 467889999999999999986
No 69
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.48 E-value=3.7e-13 Score=119.29 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=93.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 188 (272)
+.+...+...+..+|||||||+|..+..+++..| +.+++++|. +.+++.++++++..++.++++++.+|+.+..
T Consensus 139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~---- 212 (306)
T TIGR02716 139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES---- 212 (306)
T ss_pred HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC----
Confidence 3344444455678999999999999999999987 789999998 7899999999999999889999999987521
Q ss_pred hCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097 189 LNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g 234 (272)
...+|+|++... ......+++++.+.|+|||.+++.+..+..
T Consensus 213 ----~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~ 259 (306)
T TIGR02716 213 ----YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 259 (306)
T ss_pred ----CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 134699876543 223456899999999999999999887654
No 70
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.48 E-value=4.5e-13 Score=119.30 Aligned_cols=113 Identities=14% Similarity=0.153 Sum_probs=85.4
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
.+....+++|||||||+|+.+..++...+ .+|+|+|+++.++..++...+..+...+++++.+++.+... .
T Consensus 117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-------~ 187 (322)
T PRK15068 117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-------L 187 (322)
T ss_pred hhCCCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-------c
Confidence 33345678999999999999999998643 47999999999887654433333334479999998865421 3
Q ss_pred CceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 194 ~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
++||+|++.+. ..+...+++++.+.|+|||.++++.....+.
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~ 232 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGD 232 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCC
Confidence 78999998654 3456788999999999999999987655543
No 71
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.48 E-value=7.3e-13 Score=114.92 Aligned_cols=120 Identities=17% Similarity=0.238 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (272)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 184 (272)
.....+...++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.++. +++++.+|+....
T Consensus 57 d~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~ 135 (264)
T TIGR00446 57 EASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFG 135 (264)
T ss_pred CHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhh
Confidence 334444445556667889999999999999999998876689999999999999999999999886 5999999986542
Q ss_pred HHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCC
Q 024097 185 KALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 185 ~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
.. .+.||.|++|.+.. ....+++.+.++|||||+|+.....
T Consensus 136 ~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 136 AA------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred hh------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 21 35699999987521 1245788889999999999976544
No 72
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.48 E-value=2e-12 Score=117.92 Aligned_cols=109 Identities=19% Similarity=0.297 Sum_probs=88.6
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
..++++|||+|||+|.+++..+. +...+|+++|+++.+++.|++|++.+++. ++++++++|+.+.+..+... .++
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~--~~~ 293 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR--GEK 293 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc--CCC
Confidence 45678999999999999887664 22459999999999999999999999986 47999999999887654321 358
Q ss_pred eEEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEeC
Q 024097 196 YDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 196 fDlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
||+||+|.+. ..+..++..+.++|+|||+|+...
T Consensus 294 fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 9999999762 235566777889999999999754
No 73
>PLN02366 spermidine synthase
Probab=99.48 E-value=2e-12 Score=114.06 Aligned_cols=107 Identities=23% Similarity=0.380 Sum_probs=87.2
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--C-CCCEEEEEcChhHHHHHHHhCCCC
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
..++++||+||||.|..+..++++ ++..+|+.+|+++++++.+++.+...+ + .+|++++.+|+.+.+... ..
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~----~~ 163 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA----PE 163 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc----cC
Confidence 356889999999999999999876 435699999999999999999886532 2 358999999998877543 13
Q ss_pred CceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
++||+|++|...+ ...++++.+.+.|+|||+++..
T Consensus 164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 6899999987532 1457899999999999999875
No 74
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.46 E-value=1.8e-12 Score=119.87 Aligned_cols=122 Identities=24% Similarity=0.327 Sum_probs=96.5
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
+......++..++...++.+|||+|||+|..+..+++..+ +++|+++|+++.+++.+++++++.|+. ++++.+|+.+
T Consensus 228 iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~ 304 (427)
T PRK10901 228 VQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARD 304 (427)
T ss_pred EECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCccc
Confidence 3445555666677777889999999999999999999875 479999999999999999999988874 7899999876
Q ss_pred HHHHHHhCCCCCceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCC
Q 024097 183 SLKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 183 ~~~~~~~~~~~~~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
..... ..++||.|++|++... ...+++.+.++|||||.+++..+.
T Consensus 305 ~~~~~----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 305 PAQWW----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred chhhc----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 32211 1367999999875211 235788889999999999987654
No 75
>PRK14968 putative methyltransferase; Provisional
Probab=99.46 E-value=1.6e-12 Score=106.66 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=86.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCC-EEEEEcChhHHHHHH
Q 024097 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSLKAL 187 (272)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~ 187 (272)
.++...+...++++|||+|||+|..+..+++. +.+++++|+++++++.+++++...++.++ +.++++|..+.+.
T Consensus 13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-- 87 (188)
T PRK14968 13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-- 87 (188)
T ss_pred HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence 34444444467789999999999999999986 47999999999999999999988877544 8899998766332
Q ss_pred HhCCCCCceEEEEEcCCcc------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097 188 ILNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 188 ~~~~~~~~fDlV~~d~~~~------------------------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+||+|+.+.+.. ....+++.+.++|+|||.+++.
T Consensus 88 -----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 88 -----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL 147 (188)
T ss_pred -----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 34899999875411 1355789999999999988774
No 76
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.46 E-value=1.3e-13 Score=112.56 Aligned_cols=101 Identities=16% Similarity=0.218 Sum_probs=86.3
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
.+...++.+|.|+|||+|.+|..+++++| ++.++|+|-|++|++.|++.. .+++|..+|..++-+ +
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p-------~ 90 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP-------E 90 (257)
T ss_pred hCCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC-------C
Confidence 34456778999999999999999999998 899999999999999997754 248999999987654 4
Q ss_pred CceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.++|++|.++. ..+....|..+...|.|||+|.+.
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence 68999998875 455677899999999999999986
No 77
>PRK06922 hypothetical protein; Provisional
Probab=99.46 E-value=1.9e-12 Score=122.49 Aligned_cols=112 Identities=14% Similarity=0.209 Sum_probs=87.8
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
.+....++.+|||||||+|..+..+++..+ +++|+|+|+++.+++.|+++....+ .++.++++|+.+....+ +
T Consensus 412 ~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~f----e 484 (677)
T PRK06922 412 IILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSF----E 484 (677)
T ss_pred HHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCcccc----C
Confidence 344555788999999999999999998876 7899999999999999998875544 35889999987632112 2
Q ss_pred CCceEEEEEcCC----------------ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 193 ASSYDFAFVDAE----------------KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 193 ~~~fDlV~~d~~----------------~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
+++||+|++... ......+++++.++|||||.+++.+..
T Consensus 485 deSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 485 KESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred CCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 578999987532 124567899999999999999997643
No 78
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.45 E-value=1.5e-12 Score=117.34 Aligned_cols=104 Identities=21% Similarity=0.209 Sum_probs=87.8
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
..+..+||||||+|..+..+|+..| +..++|+|+++.+++.+.+++...++. ++.++++|+......+ .++++|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~----~~~s~D 194 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL----PSNSVE 194 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC----CCCcee
Confidence 3456899999999999999999986 789999999999999999999888886 4999999997755433 257999
Q ss_pred EEEEcCCccc---------hHHHHHHHHccCCCCcEEEE
Q 024097 198 FAFVDAEKRM---------YQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 198 lV~~d~~~~~---------~~~~l~~~~~lLkpgG~lvi 227 (272)
.|++..+.++ ...+++.+.++|+|||.+.+
T Consensus 195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l 233 (390)
T PRK14121 195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL 233 (390)
T ss_pred EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence 9998754221 25789999999999999987
No 79
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=99.45 E-value=9.3e-14 Score=103.79 Aligned_cols=102 Identities=30% Similarity=0.489 Sum_probs=51.5
Q ss_pred EEEcCccCHHHHHHHHHCCCCc--EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097 124 IEVGVYTGYSSLAIALVLPESG--CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (272)
Q Consensus 124 LEiG~G~G~~~~~la~~~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~ 201 (272)
||||+..|.++.++++.+++.. +++++|..+. .+.+++.+++.++.++++++.++..+.++.+. .++||++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~----~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP----DGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH----H--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC----CCCEEEEEE
Confidence 7999999999999999887554 7999999996 44455566667777789999999999887763 279999999
Q ss_pred cCCc--cchHHHHHHHHccCCCCcEEEEeCC
Q 024097 202 DAEK--RMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 202 d~~~--~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
|+.+ +.....++.+.+.|+|||+|++||+
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 9874 5567789999999999999999985
No 80
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.45 E-value=1.3e-12 Score=112.59 Aligned_cols=109 Identities=22% Similarity=0.310 Sum_probs=83.3
Q ss_pred HHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH
Q 024097 107 QAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (272)
Q Consensus 107 ~~~~l~~l~~-~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 185 (272)
+...+..+.. ..++.+|||+|||+|..++.+++. + ..+|+++|+++.+++.|+++++.+++.+++.+..++
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~------ 177 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD------ 177 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC------
Confidence 3333444333 246789999999999999887764 3 347999999999999999999988875445543221
Q ss_pred HHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 186 ~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
.+||+|+++........+++.+.++|+|||.+++..+.
T Consensus 178 --------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~ 215 (250)
T PRK00517 178 --------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL 215 (250)
T ss_pred --------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence 26999998876666777889999999999999997554
No 81
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.45 E-value=2e-12 Score=111.02 Aligned_cols=115 Identities=23% Similarity=0.402 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 105 PDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 105 ~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
+....++..++... .+.+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...++. +++++++|+.+
T Consensus 71 ~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~ 148 (251)
T TIGR03534 71 PDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFE 148 (251)
T ss_pred CChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhc
Confidence 34445555444432 346999999999999999999876 679999999999999999999888875 69999999876
Q ss_pred HHHHHHhCCCCCceEEEEEcCCcc-----------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097 183 SLKALILNGEASSYDFAFVDAEKR-----------------------------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 183 ~~~~~~~~~~~~~fDlV~~d~~~~-----------------------------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+ .++||+|+++.+.. .+..+++.+.++|+|||.+++.
T Consensus 149 ~~~-------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 149 PLP-------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred cCc-------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 322 47899999865411 0235678889999999999985
No 82
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.45 E-value=1e-12 Score=123.55 Aligned_cols=101 Identities=20% Similarity=0.333 Sum_probs=83.7
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
+.+|||+|||+|..++.++...+ +.+|+++|+|+.+++.|++++...++.++++++.+|+.+.++ .++||+|
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~-------~~~fDlI 210 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE-------KQKFDFI 210 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc-------CCCccEE
Confidence 46899999999999999998876 689999999999999999999988887789999999865332 3589999
Q ss_pred EEcCCc-----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097 200 FVDAEK-----------------------------RMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 200 ~~d~~~-----------------------------~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+++.+. ..+..+++.+.++|+|||.+++.
T Consensus 211 vsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 211 VSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred EECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 986530 11344567778899999999985
No 83
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.44 E-value=9.9e-13 Score=121.62 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=97.0
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (272)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 183 (272)
......++...+...++.+|||+|||+|+.+..+++.++ .++|+++|+++++++.+++++++.|+..++++..+|....
T Consensus 223 Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~ 301 (426)
T TIGR00563 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP 301 (426)
T ss_pred ECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc
Confidence 345566666677777889999999999999999999887 7899999999999999999999998864455576776432
Q ss_pred HHHHHhCCCCCceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 184 LKALILNGEASSYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
.... ..++||.|++|++... ...++..+.++|||||.+++..+.+.
T Consensus 302 ~~~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 302 SQWA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cccc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 1100 1368999999864111 35688889999999999999866543
No 84
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=1e-12 Score=115.41 Aligned_cols=98 Identities=17% Similarity=0.261 Sum_probs=80.7
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++.+|||+|||+|..+.++++. +.+|+++|+|+.+++.++++.+..++ ++++...|..+.. + +++||
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~-----~~~fD 186 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I-----QEEYD 186 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c-----cCCcc
Confidence 45679999999999999999974 57999999999999999999988777 4888888875421 1 47899
Q ss_pred EEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097 198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+|++... ......+++.+.++|+|||++++
T Consensus 187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9987643 23567889999999999999665
No 85
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.44 E-value=1.3e-12 Score=117.10 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=81.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
....+|||+|||+|..+..+++..+ ..+|+++|+++.+++.++++++.+++. .+++.+|..+. . .++||
T Consensus 195 ~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~---~-----~~~fD 263 (342)
T PRK09489 195 HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD---I-----KGRFD 263 (342)
T ss_pred cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---c-----CCCcc
Confidence 3456899999999999999999866 679999999999999999999988864 56777777542 1 47899
Q ss_pred EEEEcCCcc--------chHHHHHHHHccCCCCcEEEE
Q 024097 198 FAFVDAEKR--------MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 198 lV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi 227 (272)
+|+++.+.+ ....++..+.++|+|||.+++
T Consensus 264 lIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i 301 (342)
T PRK09489 264 MIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI 301 (342)
T ss_pred EEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence 999987532 246788999999999999976
No 86
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.43 E-value=1.4e-12 Score=115.29 Aligned_cols=110 Identities=14% Similarity=0.130 Sum_probs=82.2
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++++|||||||+|+.+..++...+ .+|+|+|+|+.++..++..-+..+...++.+..+++.+... ..+|
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-------~~~F 189 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-------LYAF 189 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC-------CCCc
Confidence 35678999999999999988887532 47999999999987654332222333468888887755321 3589
Q ss_pred EEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 197 DlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
|+||+.+. ..+...+++++.+.|+|||.|++......|.
T Consensus 190 D~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~ 231 (314)
T TIGR00452 190 DTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGD 231 (314)
T ss_pred CEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCc
Confidence 99998764 3456788999999999999999987665543
No 87
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.2e-12 Score=113.67 Aligned_cols=104 Identities=19% Similarity=0.297 Sum_probs=83.6
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
++++|||+|||+|..++..++. + ..+++|+|++|.+++.|++|.+.+++...++....+..+... .++||+
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~-------~~~~Dv 232 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPE-------NGPFDV 232 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcc-------cCcccE
Confidence 7899999999999999998875 3 467999999999999999999999887533333333333221 369999
Q ss_pred EEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
|+.+--.+-...+...+.++|+|||++++..++
T Consensus 233 IVANILA~vl~~La~~~~~~lkpgg~lIlSGIl 265 (300)
T COG2264 233 IVANILAEVLVELAPDIKRLLKPGGRLILSGIL 265 (300)
T ss_pred EEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence 998876556667888899999999999998765
No 88
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.43 E-value=2.3e-12 Score=125.74 Aligned_cols=109 Identities=21% Similarity=0.284 Sum_probs=91.0
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCC
Q 024097 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
....++++|||+|||+|.+++++++. + ..+|+++|+|+.+++.|++|++.+++. ++++++++|+.+.+..+ .
T Consensus 534 ~~~~~g~rVLDlf~gtG~~sl~aa~~-G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-----~ 606 (702)
T PRK11783 534 GQMAKGKDFLNLFAYTGTASVHAALG-G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-----R 606 (702)
T ss_pred HHhcCCCeEEEcCCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----C
Confidence 33456889999999999999999974 2 347999999999999999999999986 68999999998877654 4
Q ss_pred CceEEEEEcCCc--------------cchHHHHHHHHccCCCCcEEEEeCC
Q 024097 194 SSYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 194 ~~fDlV~~d~~~--------------~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
++||+||+|.+. ..+..++..+.++|+|||++++...
T Consensus 607 ~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 607 EQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 689999999762 1356678888899999999988654
No 89
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.43 E-value=2e-12 Score=109.99 Aligned_cols=110 Identities=17% Similarity=0.230 Sum_probs=89.5
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
...++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...++.++.+|+.+... +.++
T Consensus 48 ~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~------~~~~ 121 (239)
T PRK00216 48 GVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF------PDNS 121 (239)
T ss_pred CCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC------CCCC
Confidence 3446689999999999999999998764689999999999999999998776666679999999866321 1468
Q ss_pred eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
||+|++... ..+...+++.+.++|+|||.+++-+..
T Consensus 122 ~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 122 FDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred ccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence 999987643 445778899999999999999876543
No 90
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.42 E-value=5e-12 Score=114.15 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=96.9
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCC
Q 024097 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNG 191 (272)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~ 191 (272)
+.....+++||++-|.||.+++..|.. ++ +||+||.|...++.|++|++.+|+. .++.++++|+.+.+......
T Consensus 212 l~~~~~GkrvLNlFsYTGgfSv~Aa~g---GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~- 287 (393)
T COG1092 212 LGELAAGKRVLNLFSYTGGFSVHAALG---GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR- 287 (393)
T ss_pred HhhhccCCeEEEecccCcHHHHHHHhc---CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc-
Confidence 334446899999999999999998874 44 9999999999999999999999985 57899999999998877543
Q ss_pred CCCceEEEEEcCC------------ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 192 EASSYDFAFVDAE------------KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 192 ~~~~fDlV~~d~~------------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
..+||+||+|++ ..++...+..+.++|+|||++++.+....
T Consensus 288 -g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 288 -GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred -CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 359999999986 23467788888999999999999766544
No 91
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.42 E-value=2.7e-12 Score=107.13 Aligned_cols=104 Identities=18% Similarity=0.235 Sum_probs=79.9
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++.+|||||||+|..+..+++..+ +.+++|+|+|+++++.|++++. ++.+.++|+.+ +. .+++|
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~--~~-----~~~sf 106 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFD--PF-----KDNFF 106 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccC--CC-----CCCCE
Confidence 44667999999999999999998765 6799999999999999987641 36778888765 21 15799
Q ss_pred EEEEEcCCc-----cchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097 197 DFAFVDAEK-----RMYQEYFELLLQLIRVGGIIVIDNVLWHGKV 236 (272)
Q Consensus 197 DlV~~d~~~-----~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~ 236 (272)
|+|++.... .....+++++.+++ ++++++.+...+..+
T Consensus 107 D~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~~~~ 149 (204)
T TIGR03587 107 DLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNPSPV 149 (204)
T ss_pred EEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCCCce
Confidence 999986642 23567788888886 568888777655443
No 92
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.42 E-value=1.5e-12 Score=122.18 Aligned_cols=108 Identities=14% Similarity=0.207 Sum_probs=87.5
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
...++.+|||||||+|..+..+++.. +.+|+|+|+|+++++.|+++.. +...++++..+|+.+.. + .+++
T Consensus 263 ~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~----~~~~ 332 (475)
T PLN02336 263 DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y----PDNS 332 (475)
T ss_pred CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C----CCCC
Confidence 34567899999999999999999875 4699999999999999998764 44557999999986532 1 1468
Q ss_pred eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 196 YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 196 fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
||+|++... ..+...+++++.++|+|||.+++.+....
T Consensus 333 fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 373 (475)
T PLN02336 333 FDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRS 373 (475)
T ss_pred EEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 999998654 34567899999999999999999876543
No 93
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.41 E-value=5.1e-14 Score=103.77 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=62.9
Q ss_pred EEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC
Q 024097 124 IEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203 (272)
Q Consensus 124 LEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~ 203 (272)
||||||+|..+..+++.++ ..+++++|+|+.+++.+++++...+.. .......+..+..... ..++||+|++..
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~fD~V~~~~ 74 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYD----PPESFDLVVASN 74 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC----C----SEEEEE-
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcc----cccccceehhhh
Confidence 7999999999999999985 789999999999999999888876643 2444444343332211 125999999765
Q ss_pred C---ccchHHHHHHHHccCCCCcEE
Q 024097 204 E---KRMYQEYFELLLQLIRVGGII 225 (272)
Q Consensus 204 ~---~~~~~~~l~~~~~lLkpgG~l 225 (272)
. ..+...+++.+.++|+|||+|
T Consensus 75 vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 75 VLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 4 356778999999999999986
No 94
>PRK14967 putative methyltransferase; Provisional
Probab=99.40 E-value=6e-12 Score=106.56 Aligned_cols=100 Identities=18% Similarity=0.259 Sum_probs=80.3
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++++..+. +++++.+|+.+.++ .++||
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~-------~~~fD 103 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE-------FRPFD 103 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc-------CCCee
Confidence 45679999999999999998874 3 35999999999999999999988776 48899998866432 46899
Q ss_pred EEEEcCCcc------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097 198 FAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 198 lV~~d~~~~------------------------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|+++.+.. .+..+++.+.++|+|||.+++-
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV 158 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 999985311 1345678889999999999973
No 95
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.40 E-value=3.6e-12 Score=114.09 Aligned_cols=117 Identities=20% Similarity=0.280 Sum_probs=96.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+.+..+..+..+....++.+|||+|||+|..++.++.. +.+++|+|+++.+++.+++|++..++.+ +++..+|+.
T Consensus 165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~ 240 (329)
T TIGR01177 165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDAT 240 (329)
T ss_pred CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchh
Confidence 566777777777777778889999999999998886653 5799999999999999999999999876 899999997
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEe
Q 024097 182 DSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+. +.. .++||+|++|.+. ..+..+++.+.+.|+|||.+++-
T Consensus 241 ~l-~~~-----~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~ 293 (329)
T TIGR01177 241 KL-PLS-----SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA 293 (329)
T ss_pred cC-Ccc-----cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence 63 211 4689999998651 11577899999999999998874
No 96
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.40 E-value=1.8e-11 Score=100.92 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=90.2
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 188 (272)
.+...+.....+.+|||++||+|..++.++.+.. .+|+++|.++.+++.+++|++..+..++++++.+|+.+.+..+.
T Consensus 39 a~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~ 116 (189)
T TIGR00095 39 LFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA 116 (189)
T ss_pred HHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh
Confidence 3334333345678999999999999999998632 48999999999999999999999987789999999987765432
Q ss_pred hCCCCCceEEEEEcCCcc--chHHHHHHHH--ccCCCCcEEEEeCC
Q 024097 189 LNGEASSYDFAFVDAEKR--MYQEYFELLL--QLIRVGGIIVIDNV 230 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~~~--~~~~~l~~~~--~lLkpgG~lvi~d~ 230 (272)
. ....||+||.|.+.. .+...++.+. .+|+++|++++..-
T Consensus 117 ~--~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 117 K--KPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred c--cCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 1 123589999998743 3455566554 57999999998643
No 97
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.40 E-value=2e-12 Score=111.35 Aligned_cols=111 Identities=14% Similarity=0.176 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH
Q 024097 106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (272)
Q Consensus 106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 185 (272)
..+..+...+...++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++.. ...++.+|+.+. +
T Consensus 29 ~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~ 98 (251)
T PRK10258 29 QSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P 98 (251)
T ss_pred HHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c
Confidence 34444444444445689999999999999888763 5799999999999999987642 246788888553 2
Q ss_pred HHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 186 ~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
. .+++||+|++... ..+....+.++.++|+|||.+++....
T Consensus 99 ~-----~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 99 L-----ATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred C-----CCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 1 1468999998754 345778899999999999999987543
No 98
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.39 E-value=5.1e-13 Score=112.24 Aligned_cols=102 Identities=16% Similarity=0.209 Sum_probs=79.8
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-----CEEEEEcChhHHHHHHHhCCCCC
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
+++|||+|||+|..+..||+. ++.|+|+|+++++++.|++........+ ++++...++.+. .+
T Consensus 90 g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---------~~ 157 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---------TG 157 (282)
T ss_pred CceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc---------cc
Confidence 478999999999999999986 5799999999999999999843333322 355565555432 46
Q ss_pred ceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 195 SYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 195 ~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
+||.|++.-. ..+...+++.+.++|||||.+++..+...
T Consensus 158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 7999998654 34567889999999999999999877643
No 99
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.39 E-value=5.5e-12 Score=114.33 Aligned_cols=119 Identities=18% Similarity=0.278 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 102 QVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
...+++..++..+... .++.+|||+|||+|..++.+++..+ +.+|+++|+|+++++.|++|++..+. +++++++|.
T Consensus 233 IPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl 309 (423)
T PRK14966 233 IPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSW 309 (423)
T ss_pred CCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch
Confidence 3456666777766543 3457999999999999999998765 68999999999999999999987764 699999998
Q ss_pred hHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097 181 ADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 181 ~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+.... ..++||+|+++.+. ..+..+++.+.+.|+|||.+++.
T Consensus 310 ~e~~l~-----~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE 380 (423)
T PRK14966 310 FDTDMP-----SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE 380 (423)
T ss_pred hccccc-----cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 653110 13579999997651 01335566667899999998874
No 100
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.39 E-value=1.6e-12 Score=105.64 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=76.6
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
...+-.++||+|||.|.+|..|+..+ .+++++|+++.+++.|++++. +.. +|++++++..+..+ .++
T Consensus 40 p~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~--~~~-~V~~~~~dvp~~~P-------~~~ 106 (201)
T PF05401_consen 40 PRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLA--GLP-HVEWIQADVPEFWP-------EGR 106 (201)
T ss_dssp TTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTT--T-S-SEEEEES-TTT----------SS-
T ss_pred CccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcC--CCC-CeEEEECcCCCCCC-------CCC
Confidence 33344689999999999999999875 489999999999999999884 443 69999999977654 589
Q ss_pred eEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 196 YDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 196 fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
||+|++... ......++..+...|+|||.+|+-..
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 999998743 23456788999999999999999543
No 101
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=3.5e-12 Score=111.28 Aligned_cols=117 Identities=19% Similarity=0.387 Sum_probs=91.2
Q ss_pred CCCHHHHHHHHHHH-hhcC-CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097 102 QVSPDQAQLLAMLV-QILG-AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (272)
Q Consensus 102 ~~~~~~~~~l~~l~-~~~~-~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 179 (272)
...+++..++..+. .... ..+|||||||+|..++.++...+ ..+|+++|+|+++++.|++|...+++ .++.++.+|
T Consensus 91 iPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~d 168 (280)
T COG2890 91 IPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSD 168 (280)
T ss_pred ecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeee
Confidence 44567777777643 1112 22799999999999999999987 68999999999999999999999998 567777777
Q ss_pred hhHHHHHHHhCCCCCceEEEEEcCC---cc-------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097 180 AADSLKALILNGEASSYDFAFVDAE---KR-------------------------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 180 ~~~~~~~~~~~~~~~~fDlV~~d~~---~~-------------------------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+.+ .++||+|+++.+ .. -+..++..+...|+|||.+++.
T Consensus 169 lf~~~--------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le 237 (280)
T COG2890 169 LFEPL--------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE 237 (280)
T ss_pred ccccc--------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE
Confidence 66543 358999998764 11 1345677778999999999986
No 102
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.39 E-value=3.9e-12 Score=108.11 Aligned_cols=102 Identities=21% Similarity=0.253 Sum_probs=82.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
.+.+|||||||+|..+..+++..+ ..+++++|+++++++.+++.+. .++.++.+|..+... .+++||+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~------~~~~fD~ 101 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPL------EDSSFDL 101 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCC------CCCceeE
Confidence 457999999999999999999876 6789999999999998887653 368899998865321 1478999
Q ss_pred EEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
|++... ..+...+++.+.++|+|||.+++.....
T Consensus 102 vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 102 IVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred EEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 998764 3356788999999999999999975443
No 103
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.39 E-value=4.1e-12 Score=104.15 Aligned_cols=104 Identities=18% Similarity=0.255 Sum_probs=81.2
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
+...++.++||+|||.|..+++||+. +..|+++|+|+..++.+++..+..++. ++....|..+... ++
T Consensus 26 ~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~-------~~ 93 (192)
T PF03848_consen 26 VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDF-------PE 93 (192)
T ss_dssp CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS--------TT
T ss_pred HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccc-------cC
Confidence 45557889999999999999999985 679999999999999999888887775 8999888765322 46
Q ss_pred ceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 195 ~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
.||+|++... .+..+.+++.+...++|||++++...
T Consensus 94 ~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 94 EYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp TEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 8999986432 44567789999999999999988543
No 104
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.38 E-value=7.8e-12 Score=107.65 Aligned_cols=100 Identities=17% Similarity=0.202 Sum_probs=79.6
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
+.+|||+|||+|..++.+++..+ +.+|+++|+|+.+++.|++|++.++ ++++++|+.+.++... .++||+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~----~~~fDlV 157 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTAL----RGRVDIL 157 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhc----CCCEeEE
Confidence 45899999999999999998876 5799999999999999999997755 4789999876543211 2579999
Q ss_pred EEcCCcc-----------------------------chHHHHHHHHccCCCCcEEEEe
Q 024097 200 FVDAEKR-----------------------------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 200 ~~d~~~~-----------------------------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
++|.+.. -+..+++.+.++|+|||.+++.
T Consensus 158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9986511 0235667777999999999986
No 105
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.38 E-value=5.2e-12 Score=114.98 Aligned_cols=104 Identities=17% Similarity=0.244 Sum_probs=83.4
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
+...++.+|||||||+|..+..+++.. +.+|+++|+|+++++.|+++.+ ++ .+++..+|..+. ++
T Consensus 163 l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---------~~ 227 (383)
T PRK11705 163 LQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---------NG 227 (383)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---------CC
Confidence 344577899999999999999999875 4799999999999999999874 33 378888887542 36
Q ss_pred ceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 195 ~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
+||.|++... ...+..+++.+.++|||||.+++..+..+
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 8999986543 33457889999999999999999866433
No 106
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.38 E-value=8.1e-12 Score=108.87 Aligned_cols=115 Identities=19% Similarity=0.378 Sum_probs=88.1
Q ss_pred HHHHHHHHHHH---hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 105 PDQAQLLAMLV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 105 ~~~~~~l~~l~---~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
+.+..++..+. ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....+++++.+|..
T Consensus 91 ~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~ 168 (275)
T PRK09328 91 PETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWF 168 (275)
T ss_pred CCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEcccc
Confidence 34444444443 334677999999999999999999876 6899999999999999999987 344457999999985
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCc-----------------------------cchHHHHHHHHccCCCCcEEEEe
Q 024097 182 DSLKALILNGEASSYDFAFVDAEK-----------------------------RMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~-----------------------------~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+..+ .++||+|+++.+. ..+..+++.+.++|+|||.+++.
T Consensus 169 ~~~~-------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 169 EPLP-------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CcCC-------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 5321 3689999986531 11355677788999999999984
No 107
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.38 E-value=2.8e-12 Score=112.19 Aligned_cols=114 Identities=21% Similarity=0.368 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097 106 DQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (272)
Q Consensus 106 ~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 184 (272)
.+.-.+..+... .++++|||+|||+|..++..++. + ..+|+++|++|.+++.|++|++.+++.+++.+. ...+..
T Consensus 147 TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~ 222 (295)
T PF06325_consen 147 TTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLV 222 (295)
T ss_dssp HHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTC
T ss_pred HHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eecccc
Confidence 333334444333 45689999999999999988874 4 458999999999999999999999998877663 111111
Q ss_pred HHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 185 ~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
.++||+|+.+-...-.......+.++|+|||.+++..++
T Consensus 223 --------~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 223 --------EGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp --------CS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred --------cccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence 379999998877666677778888999999999998665
No 108
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=5e-12 Score=109.20 Aligned_cols=109 Identities=19% Similarity=0.256 Sum_probs=87.5
Q ss_pred HHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097 109 QLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 109 ~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 188 (272)
++|...+......+|||+|||.|..++.+++..| ..+++.+|+|..+++.+++|++.++..+. .+...|..+..
T Consensus 148 ~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v---- 221 (300)
T COG2813 148 RLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV---- 221 (300)
T ss_pred HHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc----
Confidence 4444444444444999999999999999999987 88999999999999999999999888753 77777776543
Q ss_pred hCCCCCceEEEEEcCCccc----h----HHHHHHHHccCCCCcEEEE
Q 024097 189 LNGEASSYDFAFVDAEKRM----Y----QEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~~~~----~----~~~l~~~~~lLkpgG~lvi 227 (272)
.++||+|+++.+.+. . .++++.+.+.|++||.|-+
T Consensus 222 ----~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i 264 (300)
T COG2813 222 ----EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI 264 (300)
T ss_pred ----cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence 258999999987432 2 3678888999999998766
No 109
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.37 E-value=1.5e-11 Score=100.82 Aligned_cols=127 Identities=23% Similarity=0.383 Sum_probs=95.0
Q ss_pred CCCCCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097 99 SQMQVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (272)
Q Consensus 99 ~~~~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~ 177 (272)
.++..+.....+...+-.. ..+.+|||+.||+|..++..+.+- ..+|+.||.++..++..++|++..+..++++++.
T Consensus 21 ~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~ 98 (183)
T PF03602_consen 21 TRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIK 98 (183)
T ss_dssp S-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEE
T ss_pred cCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeec
Confidence 3445555556666666666 789999999999999999877652 3599999999999999999999999988899999
Q ss_pred cChhHHHHHHHhCCCCCceEEEEEcCCcc--c-hHHHHHHHH--ccCCCCcEEEEeC
Q 024097 178 GLAADSLKALILNGEASSYDFAFVDAEKR--M-YQEYFELLL--QLIRVGGIIVIDN 229 (272)
Q Consensus 178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~~~--~-~~~~l~~~~--~lLkpgG~lvi~d 229 (272)
+|+...+...... ..+||+||+|++.. . +...++.+. .+|+++|++++..
T Consensus 99 ~d~~~~l~~~~~~--~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 99 GDAFKFLLKLAKK--GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp SSHHHHHHHHHHC--TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cCHHHHHHhhccc--CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 9998877665332 47999999998833 2 366777776 8999999999974
No 110
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.37 E-value=8.7e-12 Score=104.92 Aligned_cols=106 Identities=22% Similarity=0.282 Sum_probs=85.9
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++.+|||+|||+|..+..+++..+..++++++|+++.+++.+++++. ...+++++.+|+.+... ..++|
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~------~~~~~ 107 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF------EDNSF 107 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC------CCCcE
Confidence 3467899999999999999999988644799999999999999998875 34568999999876421 14689
Q ss_pred EEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 197 DFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 197 DlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
|+|++... ..+...+++.+.++|+|||.+++.+..
T Consensus 108 D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 108 DAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred EEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99987543 445678899999999999999986654
No 111
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.37 E-value=5.3e-12 Score=105.65 Aligned_cols=109 Identities=15% Similarity=0.135 Sum_probs=89.9
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCC-----cEEEEEeCChhHHHHHHHHHHHhCCCCC--EEEEEcChhHHHH
Q 024097 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPES-----GCLVACERDARSLEVAKKYYERAGVSHK--VKIKHGLAADSLK 185 (272)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~-----~~v~~iD~s~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~ 185 (272)
.-+...++.++||++||||-.+..+.++.+.. .+|+.+|+||+|+..++++..+.++... +.++.+|+.+. +
T Consensus 94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p 172 (296)
T KOG1540|consen 94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P 172 (296)
T ss_pred hccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C
Confidence 33344566899999999999999999988632 7999999999999999999887777544 99999999764 3
Q ss_pred HHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEE
Q 024097 186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 186 ~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+ ++++||...+... ..+....+++++|+|||||.+.+
T Consensus 173 -F----dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~c 212 (296)
T KOG1540|consen 173 -F----DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSC 212 (296)
T ss_pred -C----CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEE
Confidence 2 2689999888765 44577889999999999999886
No 112
>PLN02823 spermine synthase
Probab=99.36 E-value=2.3e-11 Score=108.49 Aligned_cols=105 Identities=14% Similarity=0.234 Sum_probs=85.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC---CCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---VSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
.++++||.||+|.|..+.++++..+ ..+++.+|+++++++.|++.+...+ ...|++++.+|+...+... .+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-----~~ 175 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-----DE 175 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC-----CC
Confidence 4678999999999999999888543 5689999999999999999886432 2468999999999987543 47
Q ss_pred ceEEEEEcCCcc---------chHHHHH-HHHccCCCCcEEEEe
Q 024097 195 SYDFAFVDAEKR---------MYQEYFE-LLLQLIRVGGIIVID 228 (272)
Q Consensus 195 ~fDlV~~d~~~~---------~~~~~l~-~~~~lLkpgG~lvi~ 228 (272)
+||+||+|...+ ...++++ .+.+.|+|||++++.
T Consensus 176 ~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 176 KFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 899999995421 1356888 899999999999875
No 113
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.35 E-value=6.2e-12 Score=112.07 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=80.6
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
++.+|||||||+|..+..+++..+ +.+|+++|+++++++.|+++... .+++++.+|+.+. +. .+++||+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p~-----~~~sFDv 181 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-PF-----PTDYADR 181 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-CC-----CCCceeE
Confidence 567999999999999999998875 57999999999999999987532 3588899998653 11 1468999
Q ss_pred EEEcCC---ccchHHHHHHHHccCCCCcEEEEeC
Q 024097 199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
|++... ..+....++++.++|+|||.+++-+
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 998654 3345678999999999999998743
No 114
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.35 E-value=1.9e-11 Score=103.99 Aligned_cols=118 Identities=15% Similarity=0.230 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
+.+...+++.......++.+|||||||+|..+..+++. +.+++++|+++.+++.+++++...+. +++++.++..+
T Consensus 32 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~ 106 (233)
T PRK05134 32 INPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEE 106 (233)
T ss_pred hhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHH
Confidence 34444556666665567889999999999999988874 46899999999999999998876655 47888888866
Q ss_pred HHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 183 SLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 183 ~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
..... .++||+|++... ..+...+++.+.++|+|||.+++...
T Consensus 107 ~~~~~-----~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 107 LAAEH-----PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred hhhhc-----CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 54321 478999998643 33566789999999999999998753
No 115
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.35 E-value=1.7e-11 Score=97.65 Aligned_cols=107 Identities=21% Similarity=0.328 Sum_probs=84.9
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
..+|||+|||.|.....|++.- -.+.++|+|.++++++.|+...++.++.+.|+|.+.|..+. ... .++||+|
T Consensus 68 A~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~~~-----~~qfdlv 140 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-DFL-----SGQFDLV 140 (227)
T ss_pred ccceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-ccc-----ccceeEE
Confidence 3499999999999999998752 23569999999999999999999999988899999998763 111 4678877
Q ss_pred EE---------cC--CccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 200 FV---------DA--EKRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 200 ~~---------d~--~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
.- .+ .......|+..+.++|+|||+++|..+.|.
T Consensus 141 lDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 141 LDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred eecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 52 11 122335678888999999999999988775
No 116
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.34 E-value=8.2e-12 Score=104.80 Aligned_cols=116 Identities=17% Similarity=0.089 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC-------------
Q 024097 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------------- 169 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------- 169 (272)
.++...+++..+. ..++.+|||+|||.|..+.+||++ +.+|+|+|+|+.+++.+.+. +++
T Consensus 19 p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~ 91 (213)
T TIGR03840 19 VNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRY 91 (213)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceee
Confidence 3455545444331 135579999999999999999974 67999999999999976331 221
Q ss_pred -CCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC-----CccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 170 -SHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 170 -~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~-----~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
..+++++++|+.+..... .++||.|+-.. +......+++.+.++|||||++++...
T Consensus 92 ~~~~v~~~~~D~~~~~~~~-----~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 92 RAGNIEIFCGDFFALTAAD-----LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred ecCceEEEEccCCCCCccc-----CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence 236899999998753221 25688876322 244456789999999999998666533
No 117
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.34 E-value=1.2e-11 Score=103.73 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=74.5
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCc
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS 195 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~ 195 (272)
.++.+|||||||+|.++..+++..++.++|+++|+++. .... .++++++|+.+. ++.+......++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIV-GVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCC
Confidence 56789999999999999999998876789999999881 1222 489999998763 233222222578
Q ss_pred eEEEEEcCCcc-------c-------hHHHHHHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAEKR-------M-------YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~~~-------~-------~~~~l~~~~~lLkpgG~lvi~ 228 (272)
||+|+++.... + ....++.+.++|+|||.+++.
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~ 164 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK 164 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 99999875311 1 135788899999999999995
No 118
>PTZ00146 fibrillarin; Provisional
Probab=99.34 E-value=1.3e-11 Score=107.06 Aligned_cols=107 Identities=15% Similarity=0.095 Sum_probs=79.3
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
...++.+|||+|||+|+++..+++.+.+.++|+++|+++.+.+...+..+.. .++.++.+|+........ ..++
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~---~~~~ 202 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRM---LVPM 202 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhc---ccCC
Confidence 3457789999999999999999999876789999999987664444433221 358899999864211100 0357
Q ss_pred eEEEEEcCCccchH-HHHHHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~~~~~~-~~l~~~~~lLkpgG~lvi~ 228 (272)
||+||+|....+.. .++.++.+.|||||.+++.
T Consensus 203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 99999998755443 4556788999999999993
No 119
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.34 E-value=3e-11 Score=107.45 Aligned_cols=120 Identities=18% Similarity=0.092 Sum_probs=88.6
Q ss_pred CCCCCHHHHHHHHH----HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE
Q 024097 100 QMQVSPDQAQLLAM----LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 175 (272)
Q Consensus 100 ~~~~~~~~~~~l~~----l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~ 175 (272)
..+.++...+.+.. ++...++.+|||+|||+|..++.+++. +.+|+++|+++.+++.|+++++..++ +++++
T Consensus 150 F~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~ 225 (315)
T PRK03522 150 FFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQF 225 (315)
T ss_pred eeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEE
Confidence 34555555444432 233345789999999999999999984 46999999999999999999999988 46999
Q ss_pred EEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 176 KHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 176 ~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+++|+.+..... .++||+|++|.+.......+......++|++++.+.
T Consensus 226 ~~~D~~~~~~~~-----~~~~D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 226 QALDSTQFATAQ-----GEVPDLVLVNPPRRGIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred EEcCHHHHHHhc-----CCCCeEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence 999998765432 357999999988655433333334446788777763
No 120
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.34 E-value=1.5e-11 Score=106.58 Aligned_cols=106 Identities=16% Similarity=0.253 Sum_probs=77.9
Q ss_pred CCCEEEEEcCccCH----HHHHHHHHCCC----CcEEEEEeCChhHHHHHHHHHHH----hC------------------
Q 024097 119 GAQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYER----AG------------------ 168 (272)
Q Consensus 119 ~~~~VLEiG~G~G~----~~~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~----~~------------------ 168 (272)
++.+|+|+|||+|. .++.+++..+. +.+|+|+|+|+.+++.|++.+-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 45556665442 46899999999999999875310 01
Q ss_pred ----CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 169 ----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 169 ----~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
+.++|+|.++|..+.... .++||+|++... .......++++.+.|+|||++++...
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~------~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPP------LGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCc------cCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 124688999988763221 478999998643 23455789999999999999998543
No 121
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.33 E-value=1.3e-11 Score=98.41 Aligned_cols=108 Identities=21% Similarity=0.234 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097 105 PDQAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (272)
Q Consensus 105 ~~~~~~l~~l~~-~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 183 (272)
....+++..+.. ..++++|||||||+|..+..+++. +.+++++|+++.+++. .++.....+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~ 72 (161)
T PF13489_consen 7 RAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDP 72 (161)
T ss_dssp HCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH-----------TTSEEEEEECHTH
T ss_pred HHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhh
Confidence 445566666664 567889999999999999999664 3499999999998876 1223332222222
Q ss_pred HHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 184 LKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
.. . +++||+|++... ..+...+++.+.++|||||++++.....
T Consensus 73 ~~-~-----~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 73 PF-P-----DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HC-H-----SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hc-c-----ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 11 1 589999998765 3457889999999999999999987654
No 122
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.32 E-value=2.7e-11 Score=105.34 Aligned_cols=108 Identities=23% Similarity=0.345 Sum_probs=83.7
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC-CCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS-HKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
.++++||++-|.||.++++.+.. + ..+|++||.|..+++.+++|++.+++. ++++++.+|+.+.+..+.. .++|
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-G-A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~---~~~f 196 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-G-AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK---GGRF 196 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-T-ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH---TT-E
T ss_pred cCCCceEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc---CCCC
Confidence 46789999999999999987763 1 348999999999999999999999986 6899999999998776533 3689
Q ss_pred EEEEEcCC---------ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 197 DFAFVDAE---------KRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 197 DlV~~d~~---------~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
|+|++|.+ ..+|...+..+.++|+|||+|++...
T Consensus 197 D~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 197 DLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp EEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 99999987 23477788888999999999887533
No 123
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.32 E-value=3e-11 Score=106.84 Aligned_cols=109 Identities=14% Similarity=0.054 Sum_probs=80.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
++.+|||+|||+|..+..+++.++++.+|+++|+|++|++.+++++......-++.++++|+.+..+.. .....+...+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~-~~~~~~~~~~ 141 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALP-PEPAAGRRLG 141 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhh-cccccCCeEE
Confidence 557999999999999999999876457999999999999999998875433335788999987643322 1000113334
Q ss_pred EEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097 199 AFVDAE-----KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 199 V~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
++++.. ......+++.+.+.|+|||.+++.
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 444432 334567899999999999999874
No 124
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=99.31 E-value=6.4e-11 Score=102.91 Aligned_cols=139 Identities=17% Similarity=0.239 Sum_probs=104.5
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--C-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--V-SHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
..+++||-||.|.|..+..++++.+ -.+++.+|+++..++.+++.+.... . ..|++++.+|+.+.+... ..
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~-----~~ 148 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC-----EE 148 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC-----CC
Confidence 3457999999999999999999865 6799999999999999999987543 2 369999999999988865 45
Q ss_pred ceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEe
Q 024097 195 SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSISMK 267 (272)
Q Consensus 195 ~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 267 (272)
+||+|++|.... ....|++.|.+.|+++|+++... |. +..+......+....+.+...-...+..+
T Consensus 149 ~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~----~~---~~~~~~~~~~~~~~~~~vf~~~~~~~~~i 221 (282)
T COG0421 149 KFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA----GS---PFLQDEEIALAYRNVSRVFSIVPPYVAPI 221 (282)
T ss_pred cCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEec----CC---cccchHHHHHHHHHHHhhccccccceecc
Confidence 899999987533 14789999999999999999862 11 22222333344445555555555555555
Q ss_pred ec
Q 024097 268 EV 269 (272)
Q Consensus 268 p~ 269 (272)
|+
T Consensus 222 pt 223 (282)
T COG0421 222 PT 223 (282)
T ss_pred ce
Confidence 54
No 125
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.31 E-value=2.5e-11 Score=102.55 Aligned_cols=125 Identities=18% Similarity=0.321 Sum_probs=97.7
Q ss_pred CCCCCHHHHHHHHHHHhhc------CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097 100 QMQVSPDQAQLLAMLVQIL------GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 173 (272)
Q Consensus 100 ~~~~~~~~~~~l~~l~~~~------~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v 173 (272)
.....|++.+++...+... ++..+||+|||+|..++.++..++ .++|+++|.|+.++..|.+|..++++.+++
T Consensus 123 VlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i 201 (328)
T KOG2904|consen 123 VLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRI 201 (328)
T ss_pred eeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCce
Confidence 3455688888888776543 456899999999999999999998 899999999999999999999999999999
Q ss_pred EEEEcCh----hHHHHHHHhCCCCCceEEEEEcCC-----------------------------ccchHHHHHHHHccCC
Q 024097 174 KIKHGLA----ADSLKALILNGEASSYDFAFVDAE-----------------------------KRMYQEYFELLLQLIR 220 (272)
Q Consensus 174 ~~~~~d~----~~~~~~~~~~~~~~~fDlV~~d~~-----------------------------~~~~~~~l~~~~~lLk 220 (272)
.+++-+. .+..+.+ .+++|+++++.+ ...+..++..+.++|+
T Consensus 202 ~v~~~~me~d~~~~~~l~-----~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq 276 (328)
T KOG2904|consen 202 EVIHNIMESDASDEHPLL-----EGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ 276 (328)
T ss_pred EEEecccccccccccccc-----cCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc
Confidence 9885543 3322222 478999987653 0113345666779999
Q ss_pred CCcEEEEeCC
Q 024097 221 VGGIIVIDNV 230 (272)
Q Consensus 221 pgG~lvi~d~ 230 (272)
|||.+.+.-.
T Consensus 277 ~gg~~~le~~ 286 (328)
T KOG2904|consen 277 PGGFEQLELV 286 (328)
T ss_pred cCCeEEEEec
Confidence 9999998754
No 126
>PRK03612 spermidine synthase; Provisional
Probab=99.30 E-value=1.3e-11 Score=116.64 Aligned_cols=107 Identities=19% Similarity=0.292 Sum_probs=84.9
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHH--HHHh---CC-CCCEEEEEcChhHHHHHHHhC
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERA---GV-SHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~~~~~~~~ 190 (272)
..++++|||||||+|..+..++++ +...+++++|+++++++.++++ +... .. .++++++.+|+.+.+...
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~--- 370 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL--- 370 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence 356789999999999999999874 4237999999999999999984 3221 12 358999999998876643
Q ss_pred CCCCceEEEEEcCCccc--------hHHHHHHHHccCCCCcEEEEeC
Q 024097 191 GEASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 191 ~~~~~fDlV~~d~~~~~--------~~~~l~~~~~lLkpgG~lvi~d 229 (272)
.++||+|++|..... ..++++.+.++|+|||++++..
T Consensus 371 --~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 371 --AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred --CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 478999999865321 3468999999999999999863
No 127
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.30 E-value=4.7e-11 Score=100.75 Aligned_cols=100 Identities=15% Similarity=0.167 Sum_probs=80.1
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++.+|||||||+|..+..+++. +.+|+|+|+++++++.|++++...+..+++++.++|+.+. .++|
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~f 120 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL---------CGEF 120 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC---------CCCc
Confidence 346789999999999999999874 4599999999999999999998777656799999998653 2689
Q ss_pred EEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097 197 DFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 197 DlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|+|++... .......+.++.+++++++++.+.
T Consensus 121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 99986432 233556788888888887777764
No 128
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.29 E-value=1.3e-11 Score=107.69 Aligned_cols=94 Identities=22% Similarity=0.226 Sum_probs=73.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCC--cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPES--GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
...+|||+|||+|..+..+++.++.. .+++|+|+|+.+++.|+++. .++++..+|+.+. +. .+++|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p~-----~~~sf 152 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-PF-----ADQSL 152 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-CC-----cCCce
Confidence 45789999999999999999877532 47999999999999997653 2478888887653 21 14789
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|+|+..... ..++++.++|||||++++-
T Consensus 153 D~I~~~~~~----~~~~e~~rvLkpgG~li~~ 180 (272)
T PRK11088 153 DAIIRIYAP----CKAEELARVVKPGGIVITV 180 (272)
T ss_pred eEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence 999975442 2467889999999999974
No 129
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.28 E-value=3.3e-11 Score=101.54 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC------------
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------------ 169 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------ 169 (272)
...+...+++..+ ...++.+|||+|||.|..+++||+. +.+|+|+|+|+.+++.+.+ +.++
T Consensus 21 ~p~~~L~~~~~~~-~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~ 93 (218)
T PRK13255 21 EVNPLLQKYWPAL-ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEH 93 (218)
T ss_pred CCCHHHHHHHHhh-CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccc
Confidence 3445444444432 1234579999999999999999974 6799999999999987642 2222
Q ss_pred --CCCEEEEEcChhHHHHHHHhCCCCCceEEEEE-----cCCccchHHHHHHHHccCCCCcEEEE
Q 024097 170 --SHKVKIKHGLAADSLKALILNGEASSYDFAFV-----DAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 170 --~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~-----d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
..++++.++|+.+..+.. .+.||+|+- ..+......+++.+.++|+|||++++
T Consensus 94 ~~~~~v~~~~~D~~~l~~~~-----~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 94 YQAGEITIYCGDFFALTAAD-----LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred cccCceEEEECcccCCCccc-----CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 246899999998753321 357999983 23345567899999999999986444
No 130
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.28 E-value=8.6e-11 Score=99.26 Aligned_cols=103 Identities=20% Similarity=0.245 Sum_probs=83.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
++.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...+.. ++++..+|+.+..... .++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG-----AKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC-----CCCccE
Confidence 4779999999999999988874 357999999999999999988776653 5889988887654321 368999
Q ss_pred EEEcCC---ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 199 AFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 199 V~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
|++... ..+...+++.+.+.|+|||.+++...
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 998643 44567789999999999999998654
No 131
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.28 E-value=6.6e-11 Score=98.01 Aligned_cols=101 Identities=22% Similarity=0.339 Sum_probs=84.6
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~ 201 (272)
.+||||||.|.+...+|...| +..++|+|+....+..+.+.+...++. ++.++.+|+...+..+.. ++++|.|++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~---~~~v~~i~i 94 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFP---PGSVDRIYI 94 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHST---TTSEEEEEE
T ss_pred eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhccc---CCchheEEE
Confidence 899999999999999999987 789999999999999999999998886 599999999987776643 479999998
Q ss_pred cCCcc-----------chHHHHHHHHccCCCCcEEEE
Q 024097 202 DAEKR-----------MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 202 d~~~~-----------~~~~~l~~~~~lLkpgG~lvi 227 (272)
..+.+ -...+++.+.++|+|||.|.+
T Consensus 95 ~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~ 131 (195)
T PF02390_consen 95 NFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYF 131 (195)
T ss_dssp ES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEE
T ss_pred eCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEE
Confidence 75411 157899999999999999987
No 132
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.27 E-value=3.3e-11 Score=113.07 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=84.4
Q ss_pred HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (272)
Q Consensus 110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 189 (272)
.+...+...++.+|||||||+|..+..+++.. .+|+++|+++++++.+++. .+...+++++++|+.+....+
T Consensus 28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~~~~~-- 99 (475)
T PLN02336 28 EILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSPDLNI-- 99 (475)
T ss_pred HHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEecccccccCC--
Confidence 33334444456799999999999999999863 5899999999999877653 233346899999985421111
Q ss_pred CCCCCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 190 NGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 190 ~~~~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
..++||+|++..... ....+++++.+.|+|||++++.+..+.
T Consensus 100 --~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~ 146 (475)
T PLN02336 100 --SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFH 146 (475)
T ss_pred --CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCC
Confidence 147899999875422 246789999999999999999776544
No 133
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.27 E-value=5.9e-11 Score=97.81 Aligned_cols=107 Identities=15% Similarity=0.189 Sum_probs=76.1
Q ss_pred HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHH
Q 024097 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKAL 187 (272)
Q Consensus 110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~ 187 (272)
+...+....++.+|||+|||+|..+..+++...+.++|+++|+++.+ .. .+++++++|+.+. +..+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHH
Confidence 33334444678899999999999999999887556799999999864 12 2478888887542 1211
Q ss_pred HhCCCCCceEEEEEcCCcc--------------chHHHHHHHHccCCCCcEEEEe
Q 024097 188 ILNGEASSYDFAFVDAEKR--------------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 188 ~~~~~~~~fDlV~~d~~~~--------------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
......++||+|+++.... .....++.+.++|+|||.+++.
T Consensus 91 ~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 91 RERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred HHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence 1111246899999875310 1256788899999999999985
No 134
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.27 E-value=2.3e-10 Score=92.79 Aligned_cols=128 Identities=18% Similarity=0.284 Sum_probs=98.7
Q ss_pred CCCCCCCHHHHHHHHHHHh-hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE
Q 024097 98 GSQMQVSPDQAQLLAMLVQ-ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK 176 (272)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~-~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~ 176 (272)
..++..+.....+...+.. ...+.++||+-+|+|..++..+.+- ..+++.+|.+.+.+...++|++..+...+++++
T Consensus 21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~ 98 (187)
T COG0742 21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVL 98 (187)
T ss_pred CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEE
Confidence 3455566666666777766 4889999999999999999887753 358999999999999999999999988889999
Q ss_pred EcChhHHHHHHHhCCCCCceEEEEEcCCccc--hHHHHHHH----HccCCCCcEEEEeCC
Q 024097 177 HGLAADSLKALILNGEASSYDFAFVDAEKRM--YQEYFELL----LQLIRVGGIIVIDNV 230 (272)
Q Consensus 177 ~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~--~~~~l~~~----~~lLkpgG~lvi~d~ 230 (272)
..|+...++.+.. .++||+||+|.+... ........ ..+|+|+|.+++..-
T Consensus 99 ~~da~~~L~~~~~---~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 99 RNDALRALKQLGT---REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred eecHHHHHHhcCC---CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 9999876665521 235999999998442 22222222 378999999999643
No 135
>PRK06202 hypothetical protein; Provisional
Probab=99.27 E-value=2.7e-11 Score=103.15 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=79.5
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (272)
Q Consensus 107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 183 (272)
..+.+...+...++.+|||||||+|..+..+++.. +++.+|+++|+++++++.|+++.... ++++..+++.+.
T Consensus 48 ~~~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l 123 (232)
T PRK06202 48 YRRLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL 123 (232)
T ss_pred HHHHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc
Confidence 33444444444567899999999999999988653 23469999999999999998875432 355555544322
Q ss_pred HHHHHhCCCCCceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 184 LKALILNGEASSYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
+. .+++||+|++....+ ....+++++.++++ |.+++.+...+
T Consensus 124 -~~-----~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 124 -VA-----EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred -cc-----cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 11 147899999875422 23468899999887 66777776654
No 136
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.27 E-value=1.5e-10 Score=105.31 Aligned_cols=120 Identities=18% Similarity=0.104 Sum_probs=91.9
Q ss_pred CCCCCCHHHHHHHHHHH-h---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEE
Q 024097 99 SQMQVSPDQAQLLAMLV-Q---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (272)
Q Consensus 99 ~~~~~~~~~~~~l~~l~-~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~ 174 (272)
+..++.+...+.+...+ . ..++.+|||+|||+|..++.++.. +.+|+++|+++.+++.|++|.+.++.. +++
T Consensus 209 ~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~ 284 (374)
T TIGR02085 209 SFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLS 284 (374)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEE
Confidence 34566776666654432 2 235689999999999999999963 468999999999999999999998885 699
Q ss_pred EEEcChhHHHHHHHhCCCCCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEe
Q 024097 175 IKHGLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 175 ~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~ 228 (272)
++.+|+.+.+... ..+||+|++|.+... ....++.+. .++|++++.+.
T Consensus 285 ~~~~d~~~~~~~~-----~~~~D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 285 FAALDSAKFATAQ-----MSAPELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred EEECCHHHHHHhc-----CCCCCEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence 9999998765432 246999999988554 344555555 47898888874
No 137
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.25 E-value=1.7e-10 Score=107.32 Aligned_cols=120 Identities=17% Similarity=0.193 Sum_probs=90.8
Q ss_pred CCCHHHHHHHH-HHH---hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097 102 QVSPDQAQLLA-MLV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (272)
Q Consensus 102 ~~~~~~~~~l~-~l~---~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~ 177 (272)
++++...+.+. .++ ...++.+|||+|||+|..++.+++.. .+|+++|+|+++++.|+++++.+++. +++++.
T Consensus 276 q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~ 351 (443)
T PRK13168 276 QVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVTFYH 351 (443)
T ss_pred EcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEE
Confidence 55555544333 332 23456899999999999999999864 58999999999999999999988875 599999
Q ss_pred cChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 178 GLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|+.+.+..... ..++||+|++|.+.......++.+.+ ++|++++.+.
T Consensus 352 ~d~~~~l~~~~~--~~~~fD~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 352 ANLEEDFTDQPW--ALGGFDKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred eChHHhhhhhhh--hcCCCCEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 999775432100 13579999999986666667766655 6888888874
No 138
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.24 E-value=1.6e-10 Score=97.96 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=75.5
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++.+|||||||+|..+..+++. +.+|+++|+++.+++.|++++...+..+++++..+|... . .++||
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~-----~~~fD 129 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----L-----LGRFD 129 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----c-----cCCcC
Confidence 46789999999999999999875 357999999999999999999887776689999998421 1 47899
Q ss_pred EEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097 198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+|++... .......++.+.+++++++++.+
T Consensus 130 ~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~ 164 (230)
T PRK07580 130 TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF 164 (230)
T ss_pred EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence 9987543 22345667777777665555443
No 139
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.24 E-value=1.7e-10 Score=97.22 Aligned_cols=103 Identities=19% Similarity=0.289 Sum_probs=89.0
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
..+||||||.|.+...+|+..| ...++|||+....+..|.+.+.+.++. ++.++++|+.+.+..+.. +++.|-|+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~---~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIP---DGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCC---CCCeeEEE
Confidence 5899999999999999999987 679999999999999999999999986 699999999998887753 35889888
Q ss_pred EcCCcc-----------chHHHHHHHHccCCCCcEEEEe
Q 024097 201 VDAEKR-----------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 201 ~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+..+.+ -...+++.+.+.|+|||.|.+.
T Consensus 125 i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a 163 (227)
T COG0220 125 INFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA 163 (227)
T ss_pred EECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence 764411 1578999999999999999873
No 140
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.24 E-value=2.5e-11 Score=98.62 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=79.6
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEE-EEEcChhHHHHHHHhCCCCCceE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
....|||+|||||..-.+.-. .+..+||++|.++.|-+++.+.+++.... ++. |+.++..+ ++++ .++++|
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~-l~~l----~d~s~D 147 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGEN-LPQL----ADGSYD 147 (252)
T ss_pred CccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhc-Cccc----ccCCee
Confidence 334689999999976543321 15789999999999999999999887554 465 89998855 4444 268999
Q ss_pred EEEEc---CCccchHHHHHHHHccCCCCcEEEEe
Q 024097 198 FAFVD---AEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 198 lV~~d---~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.|+.. ....+..+.+.++.++|||||++++=
T Consensus 148 tVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 148 TVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred eEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 99754 44677888999999999999999873
No 141
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.23 E-value=1e-10 Score=94.69 Aligned_cols=111 Identities=12% Similarity=0.060 Sum_probs=83.6
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
...++.+|||||||+|..+..+++. ..+++++|+++.+++.+++++.. .++++++++|+.+.... ..+
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~------~~~ 77 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP------KLQ 77 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc------ccC
Confidence 3446679999999999999999986 36999999999999999998843 24799999999875321 246
Q ss_pred eEEEEEcCCccchHHHHHHHHc--cCCCCcEEEEeCCCCCCcccC
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQ--LIRVGGIIVIDNVLWHGKVAD 238 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~--lLkpgG~lvi~d~~~~g~~~~ 238 (272)
||.|+.+.+.....+.+..+.+ .+.++|++++..-...--++.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~ 122 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAK 122 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCC
Confidence 9999998875555566666653 345889998876544333333
No 142
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.23 E-value=2.7e-10 Score=105.63 Aligned_cols=119 Identities=18% Similarity=0.233 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHH-HH---hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097 102 QVSPDQAQLLAM-LV---QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (272)
Q Consensus 102 ~~~~~~~~~l~~-l~---~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~ 177 (272)
+.++...+.+.. +. ...++.+|||+|||+|..++.+++.. .+|+++|+++.+++.|+++++.+++. +++++.
T Consensus 271 Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~ 346 (431)
T TIGR00479 271 QVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLA 346 (431)
T ss_pred ecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEe
Confidence 445554443332 22 23456899999999999999999863 48999999999999999999988875 699999
Q ss_pred cChhHHHHHHHhCCCCCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEE
Q 024097 178 GLAADSLKALILNGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi 227 (272)
+|+.+.++.+.. ..++||+|++|.+... ...+++.+.+ ++|++++++
T Consensus 347 ~d~~~~l~~~~~--~~~~~D~vi~dPPr~G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 347 GTLETVLPKQPW--AGQIPDVLLLDPPRKGCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCHHHHHHHHHh--cCCCCCEEEECcCCCCCCHHHHHHHHh-cCCCEEEEE
Confidence 999876654311 1357999999988554 5666776554 789887776
No 143
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.23 E-value=1.1e-10 Score=101.02 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=83.2
Q ss_pred HHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097 111 LAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 190 (272)
+...+....+++|||||||.|+.+..++..- ...|+|+|.++...-..+-.-+-.|...++.+. ....+.++.
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~l-plgvE~Lp~---- 179 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFEL-PLGVEDLPN---- 179 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEc-Ccchhhccc----
Confidence 4444445688999999999999999999863 357999999998775543322223433333333 223343433
Q ss_pred CCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 191 GEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 191 ~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
.+.||.||+-+. ..+....+..+...|+|||.+|++.....|.
T Consensus 180 --~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 180 --LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred --cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 378999998776 4567778999999999999999998887775
No 144
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.21 E-value=2.2e-10 Score=83.20 Aligned_cols=99 Identities=22% Similarity=0.327 Sum_probs=78.3
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~ 201 (272)
+|+|+|||.|..+..+++ . ...+++++|+++..+..+++.... ....+++++.+|..+..... .++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAA-LLADNVEVLKGDAEELPPEA-----DESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhc-ccccceEEEEcChhhhcccc-----CCceEEEEE
Confidence 489999999999999987 2 367999999999999988864433 33346899999987754311 478999999
Q ss_pred cCCcc----chHHHHHHHHccCCCCcEEEEe
Q 024097 202 DAEKR----MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 202 d~~~~----~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+.... ....+++.+.+.|+|||.+++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 87633 4577889999999999999875
No 145
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=99.21 E-value=9.5e-10 Score=90.43 Aligned_cols=150 Identities=21% Similarity=0.257 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCH--HHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGY--SSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~--~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
.|..++|+..++.-.+.+.++|+.++.|. .++.|+-+. ..++++++|-.+++.....++.+...++.+.++|+.|+.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 57789999999999999999999776543 345544332 247899999999998888888888888887789999985
Q ss_pred h-HHHHHHHhCCCCCceEEEEEcCCccchH-HHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhh
Q 024097 181 A-DSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME 258 (272)
Q Consensus 181 ~-~~~~~~~~~~~~~~fDlV~~d~~~~~~~-~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 258 (272)
. +.++.+ ...|++++|...+++. .+|+. .++=+.|.++|..|....+.-.. .+...+..
T Consensus 106 ~e~~~~~~------~~iDF~vVDc~~~d~~~~vl~~-~~~~~~GaVVV~~Na~~r~~~~~------------~w~~~~~~ 166 (218)
T PF07279_consen 106 PEEVMPGL------KGIDFVVVDCKREDFAARVLRA-AKLSPRGAVVVCYNAFSRSTNGF------------SWRSVLRG 166 (218)
T ss_pred HHHHHhhc------cCCCEEEEeCCchhHHHHHHHH-hccCCCceEEEEeccccCCcCCc------------cHHHhcCC
Confidence 4 466665 6799999999988777 66664 44445677777788765432111 23444577
Q ss_pred CCCeEEEEeecCCC
Q 024097 259 DERVSISMKEVQDA 272 (272)
Q Consensus 259 ~~~~~~~~lp~~~G 272 (272)
.+.+.+++||||.|
T Consensus 167 ~r~Vrsv~LPIG~G 180 (218)
T PF07279_consen 167 RRVVRSVFLPIGKG 180 (218)
T ss_pred CCceeEEEeccCCC
Confidence 88899999999988
No 146
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=99.21 E-value=1.2e-10 Score=99.89 Aligned_cols=106 Identities=21% Similarity=0.344 Sum_probs=84.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC---CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---SHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
.++++||-||.|.|..+..+++.- +..+++.+|+++..++.|++.+..... .+|++++.+|+...+... .+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----~~ 148 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----QE 148 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----SS
T ss_pred CCcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----cC
Confidence 368999999999999999988753 356999999999999999998875432 468999999999988754 34
Q ss_pred -ceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEeC
Q 024097 195 -SYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 195 -~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
+||+|++|...+ -..++++.+.+.|+|||++++..
T Consensus 149 ~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 149 EKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp T-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 899999986531 14689999999999999999864
No 147
>PLN02672 methionine S-methyltransferase
Probab=99.20 E-value=2.8e-10 Score=113.94 Aligned_cols=122 Identities=14% Similarity=0.058 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHhhc----CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--------
Q 024097 102 QVSPDQAQLLAMLVQIL----GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV-------- 169 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~----~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------- 169 (272)
...+++..++..+.... ++.+|||+|||+|..++.+++..+ ..+|+++|+|+++++.|++|.+.+++
T Consensus 97 IPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~ 175 (1082)
T PLN02672 97 IPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVY 175 (1082)
T ss_pred cCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCccccccccc
Confidence 34455656655532211 246899999999999999999876 57999999999999999999987643
Q ss_pred -------CCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC--------------c-----------------------
Q 024097 170 -------SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE--------------K----------------------- 205 (272)
Q Consensus 170 -------~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~--------------~----------------------- 205 (272)
.++++++++|..+..... ..+||+|+.+.+ .
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~~~-----~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g 250 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCRDN-----NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVED 250 (1082)
T ss_pred ccccccccccEEEEECchhhhcccc-----CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCC
Confidence 257999999998754321 237999998654 0
Q ss_pred cc----hHHHHHHHHccCCCCcEEEEeC
Q 024097 206 RM----YQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 206 ~~----~~~~l~~~~~lLkpgG~lvi~d 229 (272)
.+ +..+++.+.++|+|||.+++.-
T Consensus 251 ~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 251 QFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 00 2445666778999999999863
No 148
>PRK05785 hypothetical protein; Provisional
Probab=99.18 E-value=1.5e-10 Score=98.10 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=69.9
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
++.+|||||||+|..+..+++.. +.+|+|+|+|++|++.|++. ..++++|+.+. +. .+++||+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~l-p~-----~d~sfD~ 113 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEAL-PF-----RDKSFDV 113 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhC-CC-----CCCCEEE
Confidence 46799999999999999999875 46999999999999998763 13467777553 21 2589999
Q ss_pred EEEcCC---ccchHHHHHHHHccCCCCc
Q 024097 199 AFVDAE---KRMYQEYFELLLQLIRVGG 223 (272)
Q Consensus 199 V~~d~~---~~~~~~~l~~~~~lLkpgG 223 (272)
|++... ..+....++++.++|||..
T Consensus 114 v~~~~~l~~~~d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 114 VMSSFALHASDNIEKVIAEFTRVSRKQV 141 (226)
T ss_pred EEecChhhccCCHHHHHHHHHHHhcCce
Confidence 998654 4467789999999999953
No 149
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.18 E-value=9.6e-10 Score=99.59 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=90.4
Q ss_pred CCCCCCCHHHHHHHHHHH-hhcC--CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEE
Q 024097 98 GSQMQVSPDQAQLLAMLV-QILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK 174 (272)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~-~~~~--~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~ 174 (272)
.+..++++...+.+...+ .... +.+|||++||+|.+++.+++.. .+|+++|+++.+++.+++|++.+++. +++
T Consensus 182 ~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~ 257 (362)
T PRK05031 182 NSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQ 257 (362)
T ss_pred CCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEE
Confidence 345566766665555443 3222 3579999999999999999864 38999999999999999999998886 699
Q ss_pred EEEcChhHHHHHHHhCCC----------CCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEe
Q 024097 175 IKHGLAADSLKALILNGE----------ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 175 ~~~~d~~~~~~~~~~~~~----------~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~ 228 (272)
++.+|+.+.++.+..... ..+||+||+|.+... ....++.+.+ +++++++.
T Consensus 258 ~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS 319 (362)
T PRK05031 258 IIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS 319 (362)
T ss_pred EEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence 999999887765422110 125899999998544 4455565554 67777764
No 150
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.17 E-value=8.1e-10 Score=100.43 Aligned_cols=118 Identities=14% Similarity=0.197 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 102 QVSPDQAQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~-~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
........++...+... +..+|||++||+|..++.++...+ ..+|+++|+++.+++.+++|++.+++. .+++..+|+
T Consensus 39 ~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da 116 (382)
T PRK04338 39 ELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDA 116 (382)
T ss_pred cchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhH
Confidence 33444444443333322 346899999999999999998765 458999999999999999999998886 478999999
Q ss_pred hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+.+.. .++||+|++|.. .....+++.+.+.+++||++.+.
T Consensus 117 ~~~l~~------~~~fD~V~lDP~-Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 117 NALLHE------ERKFDVVDIDPF-GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred HHHHhh------cCCCCEEEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence 776542 257999999975 44567888888889999999996
No 151
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.17 E-value=5.2e-10 Score=103.93 Aligned_cols=126 Identities=22% Similarity=0.288 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097 102 QVSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (272)
Q Consensus 102 ~~~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 179 (272)
.+....+.+...++ ...++.+|||+++|.|+-|..++..++..+.|++.|+++..++..++++++.|+. ++.+...|
T Consensus 94 yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D 172 (470)
T PRK11933 94 YIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFD 172 (470)
T ss_pred EEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCc
Confidence 34444555555555 5568899999999999999999999977789999999999999999999999986 48888888
Q ss_pred hhHHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 180 AADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
+......+ .+.||.|++|++.+ ...+++..+.++|||||+||..-+...
T Consensus 173 ~~~~~~~~-----~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 173 GRVFGAAL-----PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred hhhhhhhc-----hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 87643333 36799999997621 125678888899999999998766543
No 152
>PHA03412 putative methyltransferase; Provisional
Probab=99.16 E-value=5.4e-10 Score=94.03 Aligned_cols=115 Identities=13% Similarity=0.102 Sum_probs=81.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 179 (272)
...+..+..+. +....+.+|||+|||+|..++.+++..+ +..+|+++|+++.+++.|++++. ++.++.+|
T Consensus 34 fTP~~iAr~~~--i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D 105 (241)
T PHA03412 34 FTPIGLARDFT--IDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINAD 105 (241)
T ss_pred CCCHHHHHHHH--HhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcc
Confidence 44455555443 2233467999999999999999998643 25699999999999999998752 47889999
Q ss_pred hhHHHHHHHhCCCCCceEEEEEcCCcc-----c----------hHHHHHHHHccCCCCcEEEEeCCC
Q 024097 180 AADSLKALILNGEASSYDFAFVDAEKR-----M----------YQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 180 ~~~~~~~~~~~~~~~~fDlV~~d~~~~-----~----------~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
+.... + .++||+|+++.+.. + ...+++.+.+++++|+.|+=.+++
T Consensus 106 ~~~~~--~-----~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~~~ 165 (241)
T PHA03412 106 ALTTE--F-----DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQMSA 165 (241)
T ss_pred hhccc--c-----cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcccc
Confidence 86532 1 36899999986511 1 344677788888888865444433
No 153
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.15 E-value=6.2e-10 Score=90.55 Aligned_cols=112 Identities=20% Similarity=0.377 Sum_probs=74.8
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC--CCCCEEEEEcChhHHH-HHHHhCCC
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHGLAADSL-KALILNGE 192 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~-~~~~~~~~ 192 (272)
...++++|||+|||+|..++.++...+ ..+|+.+|.++ .++..+.|++.++ ...++++...|..+.. .... +
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~---~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL---E 116 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH---S
T ss_pred hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc---c
Confidence 456789999999999999999998743 57999999998 9999999999876 5567888887765532 2222 1
Q ss_pred CCceEEEEEcC---CccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 193 ASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 193 ~~~fDlV~~d~---~~~~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
..+||+|+... .......+++.+.++|+++|.+++..-.+
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 36899998543 25667888899999999999877654433
No 154
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=99.15 E-value=3.3e-10 Score=93.30 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHH---CCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
.-.|.....+..++-..+|+.|+|+|...|++++++|.. ++..++|+++|++..... ++.++...+.++|++++|
T Consensus 15 ~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~G 92 (206)
T PF04989_consen 15 IQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQG 92 (206)
T ss_dssp SS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES
T ss_pred hcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEEC
Confidence 445777778888888899999999999999999998764 445789999999654332 222333456679999999
Q ss_pred ChhHH--HHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccC----CcCC--CHhhHH
Q 024097 179 LAADS--LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVAD----QMVN--DAKTIS 248 (272)
Q Consensus 179 d~~~~--~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~----~~~~--~~~~~~ 248 (272)
|..+. +.............+|+.|+. ..+...-|+...+++++|+++|+.|..+...... +.+. +....+
T Consensus 93 ds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~a 172 (206)
T PF04989_consen 93 DSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTA 172 (206)
T ss_dssp -SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------------HHH
T ss_pred CCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhhhhHHHHH
Confidence 98763 222211111245668888876 4567778888899999999999999875443222 1221 223445
Q ss_pred HHHHHHHhhhCCCeEE
Q 024097 249 IRNFNKNLMEDERVSI 264 (272)
Q Consensus 249 ~~~~~~~l~~~~~~~~ 264 (272)
+++| +.++++|+.
T Consensus 173 v~~f---L~~~~~f~i 185 (206)
T PF04989_consen 173 VKEF---LAEHPDFEI 185 (206)
T ss_dssp HHHH---HHTTTTEEE
T ss_pred HHHH---HHHCCCcEe
Confidence 5555 456777654
No 155
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=1.2e-09 Score=87.99 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHHh---hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 104 SPDQAQLLAMLVQ---ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 104 ~~~~~~~l~~l~~---~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
.+..+..+...+. ...++.|+|+|||||.+++..+.. + ..+|+|+|+++++++.+++|..+ +..++.|+.+|+
T Consensus 27 p~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv 102 (198)
T COG2263 27 PAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADV 102 (198)
T ss_pred ChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcch
Confidence 3444444444443 346778999999999999987764 3 36899999999999999999987 445799999999
Q ss_pred hHHHHHHHhCCCCCceEEEEEcCCc-----cchHHHHHHHHcc
Q 024097 181 ADSLKALILNGEASSYDFAFVDAEK-----RMYQEYFELLLQL 218 (272)
Q Consensus 181 ~~~~~~~~~~~~~~~fDlV~~d~~~-----~~~~~~l~~~~~l 218 (272)
.+. ...+|.++++.+. +.-..+++.+++.
T Consensus 103 ~~~---------~~~~dtvimNPPFG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 103 SDF---------RGKFDTVIMNPPFGSQRRHADRPFLLKALEI 136 (198)
T ss_pred hhc---------CCccceEEECCCCccccccCCHHHHHHHHHh
Confidence 764 4789999998772 2345677776654
No 156
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.12 E-value=4.5e-10 Score=92.98 Aligned_cols=101 Identities=20% Similarity=0.272 Sum_probs=77.9
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++..|+|+.||.|.+++.+|+..+ ..+|+++|++|.+++..+++++.+++.+++..+++|+.+.++ .+.|
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-------~~~~ 170 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-------EGKF 170 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----------TT-E
T ss_pred CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-------cccc
Confidence 34678999999999999999998543 678999999999999999999999999999999999988765 3789
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIV 226 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lv 226 (272)
|-|+++.+.... .++..+..++++||++.
T Consensus 171 drvim~lp~~~~-~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPESSL-EFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSSGG-GGHHHHHHHEEEEEEEE
T ss_pred CEEEECChHHHH-HHHHHHHHHhcCCcEEE
Confidence 999998764443 68999999999999875
No 157
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.11 E-value=9.8e-10 Score=97.34 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=69.9
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC----CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV----SHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
++.+|||||||+|..+..+++. +.+|+++|+|+.+++.++++.+..+. ..++++..+|..+. ++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---------~~ 211 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---------SG 211 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---------CC
Confidence 5679999999999999999974 46999999999999999999876522 23578888886432 37
Q ss_pred ceEEEEEcCCcc-----chHHHHHHHHccCCCCcEEEE
Q 024097 195 SYDFAFVDAEKR-----MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 195 ~fDlV~~d~~~~-----~~~~~l~~~~~lLkpgG~lvi 227 (272)
+||+|++..... .....++.+.+ +.+||+++.
T Consensus 212 ~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs 248 (315)
T PLN02585 212 KYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS 248 (315)
T ss_pred CcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence 899998654321 22334555554 456666554
No 158
>PHA03411 putative methyltransferase; Provisional
Probab=99.09 E-value=1e-09 Score=94.45 Aligned_cols=97 Identities=9% Similarity=0.038 Sum_probs=74.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
....+|||+|||+|..++.+++..+ ..+|+++|+++.+++.+++++ .+++++++|+.+... ..+||
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~-------~~kFD 128 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES-------NEKFD 128 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc-------cCCCc
Confidence 3457999999999999999888754 469999999999999998864 258899999987532 36899
Q ss_pred EEEEcCCccc-----------------------hHHHHHHHHccCCCCcEEEEe
Q 024097 198 FAFVDAEKRM-----------------------YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 198 lV~~d~~~~~-----------------------~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|+++.+... ...++.....+|+|+|.+.+-
T Consensus 129 lIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 129 VVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 9999765110 134555566889999977654
No 159
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.08 E-value=4.7e-09 Score=94.79 Aligned_cols=123 Identities=19% Similarity=0.134 Sum_probs=88.6
Q ss_pred CCCCCCHHHHHHHH-HHHhhcC--CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE
Q 024097 99 SQMQVSPDQAQLLA-MLVQILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKI 175 (272)
Q Consensus 99 ~~~~~~~~~~~~l~-~l~~~~~--~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~ 175 (272)
+..++++...+.+. ....... +.+|||+|||+|.+++.+++.. .+|+++|+++++++.|++|++.+++. ++++
T Consensus 174 ~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~ 249 (353)
T TIGR02143 174 SFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQI 249 (353)
T ss_pred CcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEE
Confidence 34456666554444 3333322 3579999999999999999875 38999999999999999999998886 5999
Q ss_pred EEcChhHHHHHHHhC-------C-C--CCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEe
Q 024097 176 KHGLAADSLKALILN-------G-E--ASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 176 ~~~d~~~~~~~~~~~-------~-~--~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+.+|+.+.++..... + . ...||+||+|.+... ....++.+.+ |++++.+.
T Consensus 250 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs 310 (353)
T TIGR02143 250 IRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS 310 (353)
T ss_pred EEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence 999998876542110 0 0 124899999998544 4455566554 77877774
No 160
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.07 E-value=6.2e-10 Score=93.69 Aligned_cols=153 Identities=14% Similarity=0.155 Sum_probs=98.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH-h------C----C
Q 024097 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-A------G----V 169 (272)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-~------~----~ 169 (272)
-.++|...+++.. ....++.+||..|||.|+-..+|++. +.+|+|+|+|+.+++.+.+.... . + -
T Consensus 20 ~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~ 95 (218)
T PF05724_consen 20 GEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQ 95 (218)
T ss_dssp TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEET
T ss_pred CCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeec
Confidence 3567777777777 44556679999999999999999985 57999999999999887432211 0 0 1
Q ss_pred CCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC-----CccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCH
Q 024097 170 SHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDA 244 (272)
Q Consensus 170 ~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~-----~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~ 244 (272)
.++|++.++|+.+..+.. .++||+|+=.+ +......+.+.+.++|+|||.+++--+.++.... ...+
T Consensus 96 ~~~i~~~~gDfF~l~~~~-----~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~---~GPP 167 (218)
T PF05724_consen 96 AGRITIYCGDFFELPPED-----VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM---EGPP 167 (218)
T ss_dssp TSSEEEEES-TTTGGGSC-----HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS---SSSS
T ss_pred CCceEEEEcccccCChhh-----cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC---CCcC
Confidence 246899999998854321 25899998432 3566788999999999999995443333332211 1112
Q ss_pred hhHHHHHHHHHhhhCCCeEEEEe
Q 024097 245 KTISIRNFNKNLMEDERVSISMK 267 (272)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~~~~l 267 (272)
......++.+.+. ++|+...+
T Consensus 168 f~v~~~ev~~l~~--~~f~i~~l 188 (218)
T PF05724_consen 168 FSVTEEEVRELFG--PGFEIEEL 188 (218)
T ss_dssp ----HHHHHHHHT--TTEEEEEE
T ss_pred CCCCHHHHHHHhc--CCcEEEEE
Confidence 2333455555554 66665543
No 161
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.06 E-value=3.6e-09 Score=95.78 Aligned_cols=101 Identities=13% Similarity=0.162 Sum_probs=87.3
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
.+|||+.||+|..++.++...+...+|+++|+++++++.+++|++.++.. +++++++|+...+... ..+||+|+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~-----~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR-----NRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh-----CCCCCEEE
Confidence 48999999999999999987542358999999999999999999988775 5899999998877653 36799999
Q ss_pred EcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 201 VDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 201 ~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|. .....++++.+.+.+++||+|.+.
T Consensus 120 lDP-fGs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 120 IDP-FGTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred eCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence 998 455568999999999999999986
No 162
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.05 E-value=1.3e-09 Score=100.97 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=77.6
Q ss_pred CCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 120 AQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
.+.|+|||||+|..+...+++. ....+|++||.++.+....++.++..++.++|+++++|..+.-. +.+.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l-------pekv 259 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL-------PEKV 259 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------SS-E
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------CCce
Confidence 5789999999999988777653 22469999999999998888887889999999999999988533 4699
Q ss_pred EEEEEcC-----CccchHHHHHHHHccCCCCcEEEE
Q 024097 197 DFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 197 DlV~~d~-----~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
|+|++.- ..+..++.+....+.|||||+++=
T Consensus 260 DIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 260 DIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp EEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence 9999642 234566778888899999998774
No 163
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.05 E-value=5.4e-09 Score=91.88 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+++.....+...+...++.+|||||||+|..|..+++. ..+|+++|+++.+++.+++++...+..++++++++|+.
T Consensus 19 L~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal 95 (294)
T PTZ00338 19 LKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL 95 (294)
T ss_pred cCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence 456666666666666667889999999999999999986 35899999999999999999987765568999999997
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCcc
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKR 206 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~ 206 (272)
+.. ...||.|+.+.+..
T Consensus 96 ~~~--------~~~~d~VvaNlPY~ 112 (294)
T PTZ00338 96 KTE--------FPYFDVCVANVPYQ 112 (294)
T ss_pred hhc--------ccccCEEEecCCcc
Confidence 742 24689999877644
No 164
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.05 E-value=3.4e-09 Score=83.51 Aligned_cols=124 Identities=22% Similarity=0.148 Sum_probs=98.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097 98 GSQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (272)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~ 177 (272)
++....++-.++.|...+.-..+..|||+|.|||..|..++++--+...++++|.+++++....+.+. .+.++.
T Consensus 27 GaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~ 100 (194)
T COG3963 27 GAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIIN 100 (194)
T ss_pred eeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------Cccccc
Confidence 44557788888888888888888999999999999999999876556789999999999988777652 366999
Q ss_pred cChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097 178 GLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 178 ~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
||+.+.-..+.+. ....||.|++.-+ .....++++.+...|+.||.++--
T Consensus 101 gda~~l~~~l~e~-~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf 155 (194)
T COG3963 101 GDAFDLRTTLGEH-KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF 155 (194)
T ss_pred cchhhHHHHHhhc-CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 9998754333222 2467999998654 344567899999999999998853
No 165
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.05 E-value=3e-09 Score=86.97 Aligned_cols=121 Identities=14% Similarity=0.179 Sum_probs=90.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCc--------EEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESG--------CLVACERDARSLEVAKKYYERAGVSHKV 173 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~--------~v~~iD~s~~~~~~a~~~~~~~~~~~~v 173 (272)
.+.+..+..|..+....++..|||--||+|.+.+..+....... +++|+|+++++++.|++|++.+++.+.+
T Consensus 11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 67788899999998888889999999999999988766544222 4899999999999999999999998889
Q ss_pred EEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-----------cchHHHHHHHHccCCCCcEEEEe
Q 024097 174 KIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 174 ~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-----------~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+.+.|+.+.. .. .+++|.|++|.+. .-|..+++.+.+++++..++++.
T Consensus 91 ~~~~~D~~~l~-~~-----~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~ 150 (179)
T PF01170_consen 91 DFIQWDARELP-LP-----DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT 150 (179)
T ss_dssp EEEE--GGGGG-GT-----TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred EEEecchhhcc-cc-----cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence 99999998754 11 4789999999761 22566788888999996666654
No 166
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.8e-09 Score=91.27 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
+.+....++.+++...++.+|+|-|+|+|..+.++++.+.+.|+++.+|......+.|++.+++.++.+++++.+-|...
T Consensus 89 ~Yt~Dia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 89 LYTPDIAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred EecccHHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 44555677778888999999999999999999999999988999999999999999999999999999999999998875
Q ss_pred HHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCc
Q 024097 183 SLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGG 223 (272)
Q Consensus 183 ~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG 223 (272)
.-... .+..+|.||+|.+.++. .+-.+.++||.+|
T Consensus 169 ~GF~~----ks~~aDaVFLDlPaPw~--AiPha~~~lk~~g 203 (314)
T KOG2915|consen 169 SGFLI----KSLKADAVFLDLPAPWE--AIPHAAKILKDEG 203 (314)
T ss_pred CCccc----cccccceEEEcCCChhh--hhhhhHHHhhhcC
Confidence 32111 14689999999775442 3444455666655
No 167
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.02 E-value=1.8e-09 Score=92.35 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=84.5
Q ss_pred HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (272)
Q Consensus 110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 189 (272)
.+.......+.++|||||+|.|..+..++++.| +.+++.+|. |+.++.+++ .+|++++.||+.+.+
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~----- 156 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPL----- 156 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCC-----
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhhh-----
Confidence 334444455668999999999999999999998 889999999 888888877 568999999998532
Q ss_pred CCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCC--cEEEEeCCCCCCc
Q 024097 190 NGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVG--GIIVIDNVLWHGK 235 (272)
Q Consensus 190 ~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpg--G~lvi~d~~~~g~ 235 (272)
+. +|++++... .+....+++++.+.|+|| |.|+|.+...+..
T Consensus 157 ---P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 157 ---PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp ---SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred ---cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 24 999998654 334667899999999999 9999988876543
No 168
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.02 E-value=3.2e-10 Score=93.85 Aligned_cols=104 Identities=20% Similarity=0.340 Sum_probs=83.3
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCC-CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
..++.+|||..+|-||.++..+++ ++ +|+++|.+|..++.|+-|--..++ ...++++.||+.+..+.+ +++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~----~D~ 204 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF----DDE 204 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC----Ccc
Confidence 346889999999999999988875 55 999999999999988755322222 235899999999988877 367
Q ss_pred ceEEEEEcCCc-----c-chHHHHHHHHccCCCCcEEEE
Q 024097 195 SYDFAFVDAEK-----R-MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 195 ~fDlV~~d~~~-----~-~~~~~l~~~~~lLkpgG~lvi 227 (272)
+||+|+.|.+. + ...+++.+++++|||||.++-
T Consensus 205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 89999998762 1 246789999999999999874
No 169
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.01 E-value=2.4e-09 Score=89.16 Aligned_cols=111 Identities=17% Similarity=0.333 Sum_probs=79.1
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC----------------------------
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV---------------------------- 169 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~---------------------------- 169 (272)
..++.+|||||-+|..++.+|+.+. .-.+.|+||++..++.|+++++..--
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 4677899999999999999999987 45799999999999999998764210
Q ss_pred ------CCCEEEEEcCh----hHHHHHHHhCCCCCceEEEEEcC---------CccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 170 ------SHKVKIKHGLA----ADSLKALILNGEASSYDFAFVDA---------EKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 170 ------~~~v~~~~~d~----~~~~~~~~~~~~~~~fDlV~~d~---------~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
.+++.+...+. .+.+. . ....||+|++-. ..+....+|.++.++|.|||++|+.--
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~-~----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQ 210 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLD-M----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQ 210 (288)
T ss_pred cccccCCcchhcccccEEEecchhhh-h----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCC
Confidence 01111111111 11121 1 246899998532 244578899999999999999999765
Q ss_pred CCCC
Q 024097 231 LWHG 234 (272)
Q Consensus 231 ~~~g 234 (272)
-|..
T Consensus 211 pWks 214 (288)
T KOG2899|consen 211 PWKS 214 (288)
T ss_pred chHH
Confidence 5543
No 170
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.01 E-value=8.3e-10 Score=88.11 Aligned_cols=78 Identities=22% Similarity=0.262 Sum_probs=59.0
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
+.|+|+.||.|+.++.||+.+. +|+++|+++..++.|+.|.+-.|+.++|+++++|+.+.++.+.. ...||+||
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~---~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS---NKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB---------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc---cccccEEE
Confidence 3699999999999999999854 89999999999999999999999999999999999987654311 12289999
Q ss_pred EcCC
Q 024097 201 VDAE 204 (272)
Q Consensus 201 ~d~~ 204 (272)
++.+
T Consensus 75 lSPP 78 (163)
T PF09445_consen 75 LSPP 78 (163)
T ss_dssp E---
T ss_pred ECCC
Confidence 9875
No 171
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.01 E-value=2.6e-09 Score=90.00 Aligned_cols=128 Identities=9% Similarity=-0.000 Sum_probs=89.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHH------H-----hC
Q 024097 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE------R-----AG 168 (272)
Q Consensus 100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~------~-----~~ 168 (272)
...+++...+.+..+.. .++.+||..|||.|....+|++. +.+|+|+|+|+.+++.+.+... . .-
T Consensus 25 ~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~ 100 (226)
T PRK13256 25 QESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLY 100 (226)
T ss_pred cCCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceeccccccee
Confidence 33556666556554432 24579999999999999999985 6789999999999988755210 0 00
Q ss_pred CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC-----CccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097 169 VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA-----EKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (272)
Q Consensus 169 ~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~-----~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g 234 (272)
-..++++.++|+.+..+.. ...++||+|+-.+ +......+.+.+.++|+|||.+++-.....+
T Consensus 101 ~~~~i~~~~gD~f~l~~~~---~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~ 168 (226)
T PRK13256 101 KGDDIEIYVADIFNLPKIA---NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDK 168 (226)
T ss_pred ccCceEEEEccCcCCCccc---cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCC
Confidence 1236899999998853200 0136899987432 3555778999999999999998876554443
No 172
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.5e-09 Score=87.24 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHh--hcCCCEEEEEcCccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhC--------C-CCC
Q 024097 105 PDQAQLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAG--------V-SHK 172 (272)
Q Consensus 105 ~~~~~~l~~l~~--~~~~~~VLEiG~G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~--------~-~~~ 172 (272)
|..-..+...+. ..++.+.||+|+|+|+.+..++..+...+ ..+|||.-++.++.+++++.+.- + ..+
T Consensus 66 p~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~ 145 (237)
T KOG1661|consen 66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGE 145 (237)
T ss_pred hHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCc
Confidence 444444444443 56888999999999999999997775444 45999999999999999988643 1 246
Q ss_pred EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+.++.||.....++ ..+||.|++.+.... ..+++...|++||.|++-
T Consensus 146 l~ivvGDgr~g~~e------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 146 LSIVVGDGRKGYAE------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLIP 192 (237)
T ss_pred eEEEeCCccccCCc------cCCcceEEEccCccc---cHHHHHHhhccCCeEEEe
Confidence 88999999775443 589999999876444 356677788999999985
No 173
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=1.2e-08 Score=93.97 Aligned_cols=123 Identities=21% Similarity=0.223 Sum_probs=97.2
Q ss_pred CCCCCCCHHHHHHHHHHHh----hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097 98 GSQMQVSPDQAQLLAMLVQ----ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 173 (272)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~----~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v 173 (272)
++..+.++...+-|...+. ..++++|||+-||.|.+++.+|+. ..+|+|+|+++++++.|++|.+.++..+ +
T Consensus 268 ~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~ 343 (432)
T COG2265 268 RSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-V 343 (432)
T ss_pred CCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-E
Confidence 4566788877776665543 346689999999999999999965 4599999999999999999999999986 9
Q ss_pred EEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchH-HHHHHHHccCCCCcEEEEe
Q 024097 174 KIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQ-EYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 174 ~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~-~~l~~~~~lLkpgG~lvi~ 228 (272)
+|..+++.+...... +...+|.|++|.+..... .+++.+. .++|..++.+.
T Consensus 344 ~f~~~~ae~~~~~~~---~~~~~d~VvvDPPR~G~~~~~lk~l~-~~~p~~IvYVS 395 (432)
T COG2265 344 EFIAGDAEEFTPAWW---EGYKPDVVVVDPPRAGADREVLKQLA-KLKPKRIVYVS 395 (432)
T ss_pred EEEeCCHHHHhhhcc---ccCCCCEEEECCCCCCCCHHHHHHHH-hcCCCcEEEEe
Confidence 999999988776542 135789999999976655 5555555 45777777763
No 174
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.97 E-value=5.3e-09 Score=92.78 Aligned_cols=126 Identities=18% Similarity=0.174 Sum_probs=100.5
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
...+.+|+|.-+|.|++++.+|+.-. .+|+++|+||.+++..++|++.+++.+++..++||+.+..+.+ +.+
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~------~~a 257 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL------GVA 257 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc------ccC
Confidence 34589999999999999999998743 3499999999999999999999999988999999999987753 789
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHh
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNL 256 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l 256 (272)
|-|++..+.. ...++..+.+.+++||++.++...-..... +.....++++....
T Consensus 258 DrIim~~p~~-a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~-----~~~~~~i~~~~~~~ 311 (341)
T COG2520 258 DRIIMGLPKS-AHEFLPLALELLKDGGIIHYYEFVPEDDIE-----ERPEKRIKSAARKG 311 (341)
T ss_pred CEEEeCCCCc-chhhHHHHHHHhhcCcEEEEEeccchhhcc-----cchHHHHHHHHhhc
Confidence 9999987653 346888899999999999998765433211 12344555555443
No 175
>PRK00536 speE spermidine synthase; Provisional
Probab=98.97 E-value=2e-08 Score=86.40 Aligned_cols=98 Identities=10% Similarity=0.089 Sum_probs=77.5
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CC-CCCEEEEEcChhHHHHHHHhCCCC
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
..++++||-||.|-|..+..++++ + .+|+.||+++++++.+++.+... ++ ..|++++.. ..+. ..
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~----~~ 137 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL----DI 137 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc----cC
Confidence 457899999999999999999987 3 39999999999999999965542 22 457888751 1111 13
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
++||+|++|... ...+++.+.+.|+|||+++..
T Consensus 138 ~~fDVIIvDs~~--~~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 138 KKYDLIICLQEP--DIHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred CcCCEEEEcCCC--ChHHHHHHHHhcCCCcEEEEC
Confidence 689999999652 357889999999999999986
No 176
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.95 E-value=1.4e-08 Score=89.87 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=65.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-CCCCCEEEEE-cChhHHHHHHHhCCCCCce
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKH-GLAADSLKALILNGEASSY 196 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~-~d~~~~~~~~~~~~~~~~f 196 (272)
...+|||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.++++++. .+..+....+.. ..+.|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~--~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH--KNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc--cCCce
Confidence 357999999999998888887765 689999999999999999999999 7888899875 344333322210 14689
Q ss_pred EEEEEcCC
Q 024097 197 DFAFVDAE 204 (272)
Q Consensus 197 DlV~~d~~ 204 (272)
|+|+++.+
T Consensus 191 DlivcNPP 198 (321)
T PRK11727 191 DATLCNPP 198 (321)
T ss_pred EEEEeCCC
Confidence 99999876
No 177
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=1.4e-08 Score=91.64 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=101.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
.+.....++...++...++.+|||+.++.|+=|..+++.+.. +..|+++|+++..++..++++++.|..+ +.++..|+
T Consensus 139 ~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~ 217 (355)
T COG0144 139 YVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDA 217 (355)
T ss_pred EEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccc
Confidence 455666777777888889999999999999999999999874 3556999999999999999999999986 78888877
Q ss_pred hHHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097 181 ADSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (272)
Q Consensus 181 ~~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lLkpgG~lvi~d~~~~g 234 (272)
........ ..++||.|++|++.. -..++++.+.++|||||+|+...+...-
T Consensus 218 ~~~~~~~~---~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~ 293 (355)
T COG0144 218 RRLAELLP---GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP 293 (355)
T ss_pred cccccccc---ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence 54332221 123699999997511 1345788888999999999998776543
No 178
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.94 E-value=4.3e-09 Score=85.57 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=89.7
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++.+|||+|||.|....++.+. .+.+.+|+|++++.+..+.+ .| +.++++|+.+.+..+ ++++||
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~----rG----v~Viq~Dld~gL~~f----~d~sFD 77 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVA----RG----VSVIQGDLDEGLADF----PDQSFD 77 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHH----cC----CCEEECCHHHhHhhC----CCCCcc
Confidence 36789999999999998888875 36899999999998765544 23 679999998877665 368999
Q ss_pred EEEEcCCc---cchHHHHHHHHccCCCCcEEEEeCCC---------CCCcccCC-----cC---CCHhhHHHHHHHHHhh
Q 024097 198 FAFVDAEK---RMYQEYFELLLQLIRVGGIIVIDNVL---------WHGKVADQ-----MV---NDAKTISIRNFNKNLM 257 (272)
Q Consensus 198 lV~~d~~~---~~~~~~l~~~~~lLkpgG~lvi~d~~---------~~g~~~~~-----~~---~~~~~~~~~~~~~~l~ 257 (272)
.|++.... ......++++.|+-| .+++.+.|.. +.|++.-. .| +.-....+++|-+...
T Consensus 78 ~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 78 YVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred EEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 99987653 335566777766533 4677777752 46665321 11 2233457888887765
Q ss_pred hC
Q 024097 258 ED 259 (272)
Q Consensus 258 ~~ 259 (272)
+.
T Consensus 157 ~~ 158 (193)
T PF07021_consen 157 EL 158 (193)
T ss_pred HC
Confidence 43
No 179
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=2e-08 Score=80.27 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=83.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
.++.++|||||+|..+..+++...++..+.++|+||.+.+..++..+.++. +++.++.|..+.+. .++.|+
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~-------~~~VDv 113 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR-------NESVDV 113 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc-------cCCccE
Confidence 377899999999999999999988788999999999999999988877665 48889888877665 478999
Q ss_pred EEEcCC--------c----------------cchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 199 AFVDAE--------K----------------RMYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 199 V~~d~~--------~----------------~~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
++.+.+ . .-...++..+-.+|.|.|++.+--+..
T Consensus 114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA 171 (209)
T ss_pred EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence 887643 0 012345566667889999998864443
No 180
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.93 E-value=2.1e-09 Score=88.31 Aligned_cols=113 Identities=14% Similarity=0.180 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHhhcC--CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097 102 QVSPDQAQLLAMLVQILG--AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~--~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 179 (272)
.+..+..+-...++.... +.-|||||||+|.++..+... +...+|+|+|+.|++.|.+.- +. -.++.+|
T Consensus 31 ~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e----~e--gdlil~D 101 (270)
T KOG1541|consen 31 LIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE----LE--GDLILCD 101 (270)
T ss_pred eehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh----hh--cCeeeee
Confidence 344444444444444444 678999999999999877652 567899999999999998622 11 2567777
Q ss_pred hhHHHHHHHhCCCCCceEEEEEcCC--------------ccchHHHHHHHHccCCCCcEEEEe
Q 024097 180 AADSLKALILNGEASSYDFAFVDAE--------------KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 180 ~~~~~~~~~~~~~~~~fDlV~~d~~--------------~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.-+-++.. +++||-+++... ......||..++..|++|+..|+.
T Consensus 102 MG~Glpfr-----pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 102 MGEGLPFR-----PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred cCCCCCCC-----CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence 76655543 689999875321 223456788899999999998875
No 181
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.92 E-value=2.7e-08 Score=86.74 Aligned_cols=104 Identities=11% Similarity=0.023 Sum_probs=76.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
..+++...+.+...+...++.+|||||||+|..+..+++.. .+|+++|+++++++.+++++.. .+++++++|+
T Consensus 24 fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~ 96 (272)
T PRK00274 24 FLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDA 96 (272)
T ss_pred cCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChh
Confidence 34566666666666666678899999999999999999874 3899999999999999887632 4799999999
Q ss_pred hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHc
Q 024097 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ 217 (272)
Q Consensus 181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~ 217 (272)
.+.... +-.+|.|+.+.+..-...++..+..
T Consensus 97 ~~~~~~------~~~~~~vv~NlPY~iss~ii~~~l~ 127 (272)
T PRK00274 97 LKVDLS------ELQPLKVVANLPYNITTPLLFHLLE 127 (272)
T ss_pred hcCCHH------HcCcceEEEeCCccchHHHHHHHHh
Confidence 874211 1115788877664444555555543
No 182
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.92 E-value=7.8e-09 Score=91.17 Aligned_cols=118 Identities=20% Similarity=0.239 Sum_probs=97.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-C
Q 024097 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-L 179 (272)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d 179 (272)
..+.|..+..+..+....++..|||=-||||...+..... +++++|+|++..|++-|+.|++..++.+ ..+... |
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~D 254 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLD 254 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEecc
Confidence 3788999999999999999999999999999998876643 6899999999999999999999998765 544444 8
Q ss_pred hhHHHHHHHhCCCCCceEEEEEcCCc------------cchHHHHHHHHccCCCCcEEEEe
Q 024097 180 AADSLKALILNGEASSYDFAFVDAEK------------RMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 180 ~~~~~~~~~~~~~~~~fDlV~~d~~~------------~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+... + + ...++|.|..|.+- +-+.++++.+.++|++||++++-
T Consensus 255 a~~l-p-l----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 255 ATNL-P-L----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred cccC-C-C----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 8654 3 3 13469999999761 12678899999999999999984
No 183
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.92 E-value=2.6e-08 Score=87.21 Aligned_cols=152 Identities=19% Similarity=0.241 Sum_probs=113.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+......+...++...++.+|||+.++.|+-+..+++.+...+.+++.|+++..+...++++++.|... +.+...|+.
T Consensus 68 ~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~ 146 (283)
T PF01189_consen 68 YVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADAR 146 (283)
T ss_dssp EEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHH
T ss_pred EecccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeeccc
Confidence 3445555666667777788999999999999999999999878999999999999999999999999874 888878887
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCcc-------------------------chHHHHHHHHccC----CCCcEEEEeCCCC
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKR-------------------------MYQEYFELLLQLI----RVGGIIVIDNVLW 232 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~-------------------------~~~~~l~~~~~lL----kpgG~lvi~d~~~ 232 (272)
...+... ...||.|++|++.. ...+.++.+.+.+ ||||++|..-...
T Consensus 147 ~~~~~~~----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 147 KLDPKKP----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp HHHHHHH----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred ccccccc----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 7654432 24699999997510 1245788888999 9999999875543
Q ss_pred CCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEEEeec
Q 024097 233 HGKVADQMVNDAKTISIRNFNKNLMEDERVSISMKEV 269 (272)
Q Consensus 233 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~ 269 (272)
.-. +....++.|++ ++|+++..-++.
T Consensus 223 ~~e--------ENE~vV~~fl~---~~~~~~l~~~~~ 248 (283)
T PF01189_consen 223 SPE--------ENEEVVEKFLK---RHPDFELVPIPL 248 (283)
T ss_dssp HGG--------GTHHHHHHHHH---HSTSEEEECCES
T ss_pred HHH--------HHHHHHHHHHH---hCCCcEEEeccc
Confidence 221 12234565655 578887665443
No 184
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.92 E-value=1.5e-08 Score=87.60 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=73.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
..+++.....+...+...++.+|||||||+|..+..+++. ..+|+++|+++.+++.+++++.. .++++++++|+
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~ 84 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDA 84 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecc
Confidence 3567777777777777677889999999999999999987 35899999999999999988753 34799999999
Q ss_pred hHHHHHHHhCCCCCceEEEEEcCCc
Q 024097 181 ADSLKALILNGEASSYDFAFVDAEK 205 (272)
Q Consensus 181 ~~~~~~~~~~~~~~~fDlV~~d~~~ 205 (272)
.+.. ...||.|+.+.+.
T Consensus 85 ~~~~--------~~~~d~Vv~NlPy 101 (258)
T PRK14896 85 LKVD--------LPEFNKVVSNLPY 101 (258)
T ss_pred ccCC--------chhceEEEEcCCc
Confidence 7642 1357999887653
No 185
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.90 E-value=1.1e-08 Score=84.17 Aligned_cols=115 Identities=17% Similarity=0.155 Sum_probs=83.0
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH--hCCCCCceEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI--LNGEASSYDFA 199 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~~fDlV 199 (272)
+|||||||||-.+.++++.+| ..+-...|.++....-.+..+...++.+-..-+..|+.+...... .....++||.|
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 599999999999999999998 678899999999887777777777765433344444443211110 00014689999
Q ss_pred EEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCCCC-Cccc
Q 024097 200 FVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVLWH-GKVA 237 (272)
Q Consensus 200 ~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~-g~~~ 237 (272)
|+... ......+|+.+.++|++||.|++-..+.. |...
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~t 150 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFT 150 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeC
Confidence 97543 44567789999999999999999876644 4443
No 186
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.88 E-value=2.5e-09 Score=89.12 Aligned_cols=107 Identities=20% Similarity=0.193 Sum_probs=78.3
Q ss_pred EEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
+|||||||.|.....+.+..+. +-+|+++|.+|.+++..+++..... .++.....|... +.+...-+.+++|+|.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~--~~~~~~~~~~svD~it 149 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTS--PSLKEPPEEGSVDIIT 149 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccc--hhccCCCCcCccceEE
Confidence 7999999999999999987652 3689999999999999988754322 345555455433 2222222467888775
Q ss_pred Ec-----CCccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 201 VD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 201 ~d-----~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
+. -.+......++++.++|||||.|++-|...
T Consensus 150 ~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 150 LIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred EEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 32 235567788999999999999999987653
No 187
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.87 E-value=2.4e-09 Score=89.27 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcCCC-EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHH
Q 024097 108 AQLLAMLVQILGAQ-RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKA 186 (272)
Q Consensus 108 ~~~l~~l~~~~~~~-~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 186 (272)
..++..++...++. .++|+|||+|..++.++++.. +|+++|+++.|++.|++.....-..-..++...+..+.+
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-- 95 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-- 95 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc--
Confidence 45566666555544 899999999988888888754 899999999999988775422111111122211111111
Q ss_pred HHhCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCCc-EEEE
Q 024097 187 LILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGG-IIVI 227 (272)
Q Consensus 187 ~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpgG-~lvi 227 (272)
|.+++.|+|.+.-..+ +...+++.+.++||+.| ++.+
T Consensus 96 ----g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 96 ----GGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred ----CCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 2268999998765433 46789999999999876 6665
No 188
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.87 E-value=3.6e-09 Score=87.53 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=83.8
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
-+++||+|||||..+..+-... .+++|+|+|..|+++|.++ ++-+ ++.++++..+++.. ++++||+|
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~~----~~er~DLi 192 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLEDL----TQERFDLI 192 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhhc----cCCcccch
Confidence 5799999999999998887764 3899999999999988763 2211 34455555444422 35799999
Q ss_pred EEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC---CCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEE
Q 024097 200 FVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL---WHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS 265 (272)
Q Consensus 200 ~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~---~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (272)
..... ......++--+..+|+|||.+.+.-=. |.+.+..|. .+...-+.|........+++.+
T Consensus 193 ~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps---~RyAH~~~YVr~~l~~~Gl~~i 261 (287)
T COG4976 193 VAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPS---QRYAHSESYVRALLAASGLEVI 261 (287)
T ss_pred hhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchh---hhhccchHHHHHHHHhcCceEE
Confidence 75432 344566777788999999999985321 222233332 1122234455555555566544
No 189
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.87 E-value=1.7e-08 Score=88.37 Aligned_cols=82 Identities=21% Similarity=0.154 Sum_probs=68.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++..+||.+||.|+.+..+++.+++.++|+|+|.++++++.|++.+.. .++++++++|+.+....+.. +..++|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~~--~~~~vD 92 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLAE--GLGKVD 92 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHHc--CCCccC
Confidence 4667999999999999999999987678999999999999999988754 45899999999887554422 123799
Q ss_pred EEEEcCC
Q 024097 198 FAFVDAE 204 (272)
Q Consensus 198 lV~~d~~ 204 (272)
.|++|..
T Consensus 93 gIl~DLG 99 (296)
T PRK00050 93 GILLDLG 99 (296)
T ss_pred EEEECCC
Confidence 9998865
No 190
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.86 E-value=9.3e-09 Score=85.13 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=65.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
++.+|||||||+|..+..+++.. +..++++|+++++++.+++. +++++++|+.+.++.+ .+++||+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~----~~~sfD~ 78 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF----PDKSFDY 78 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc----CCCCcCE
Confidence 56799999999999999888653 45789999999999887541 3678888876533211 1478999
Q ss_pred EEEcCC---ccchHHHHHHHHccCCC
Q 024097 199 AFVDAE---KRMYQEYFELLLQLIRV 221 (272)
Q Consensus 199 V~~d~~---~~~~~~~l~~~~~lLkp 221 (272)
|++... ..+...+++++.+.+++
T Consensus 79 Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 79 VILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred EEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 998765 34456677777776654
No 191
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.85 E-value=4.1e-08 Score=84.73 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=75.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+.+...+.+...+...++.+|||||||+|..+..+++..+ +|+++|+++.+++.+++++.. ..+++++.+|+.
T Consensus 12 l~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~ 85 (253)
T TIGR00755 12 LIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDAL 85 (253)
T ss_pred CCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchh
Confidence 45666666666666666788999999999999999998754 699999999999999887643 347999999997
Q ss_pred HHHHHHHhCCCCCceE---EEEEcCCccchHHHHHHHHc
Q 024097 182 DSLKALILNGEASSYD---FAFVDAEKRMYQEYFELLLQ 217 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fD---lV~~d~~~~~~~~~l~~~~~ 217 (272)
+... ..|| +|+.+.+.......+..+..
T Consensus 86 ~~~~--------~~~d~~~~vvsNlPy~i~~~il~~ll~ 116 (253)
T TIGR00755 86 KVDL--------PDFPKQLKVVSNLPYNISSPLIFKLLE 116 (253)
T ss_pred cCCh--------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence 6422 1344 77776664444555555554
No 192
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.85 E-value=1.8e-07 Score=80.49 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (272)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 183 (272)
....+.+..+.....+-+||||.||.|...+-.....+. ..+|...|.++..++..++.++..|+.+-++|.++|+.+.
T Consensus 121 ~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 121 ELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred HHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 444445555555567889999999999999988888774 3689999999999999999999999998779999999884
Q ss_pred HHHHHhCCCCCceEEEEEcCCcc---c---hHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097 184 LKALILNGEASSYDFAFVDAEKR---M---YQEYFELLLQLIRVGGIIVIDNVLWHGKV 236 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~~~---~---~~~~l~~~~~lLkpgG~lvi~d~~~~g~~ 236 (272)
.... . .....+++++.+-.+ + ....+.-+...+.|||++|..+--|+...
T Consensus 201 ~~l~-~--l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQl 256 (311)
T PF12147_consen 201 DSLA-A--LDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQL 256 (311)
T ss_pred hHhh-c--cCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcch
Confidence 2211 0 034579998876522 2 44467778899999999999988887664
No 193
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.85 E-value=1.2e-08 Score=89.72 Aligned_cols=103 Identities=20% Similarity=0.312 Sum_probs=79.1
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..+++.|||+|||+|..++..|++- ..+|+++|.+.-+ +.|++.+..+++.+.|++++|.+.+. .++ .++.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi--~LP----~eKV 128 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI--ELP----VEKV 128 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE--ecC----ccce
Confidence 5688999999999999999999874 3689999997655 99999999999999999999999875 221 3789
Q ss_pred EEEEEcCC--ccchHHHHHHHH----ccCCCCcEEEEe
Q 024097 197 DFAFVDAE--KRMYQEYFELLL----QLIRVGGIIVID 228 (272)
Q Consensus 197 DlV~~d~~--~~~~~~~l~~~~----~lLkpgG~lvi~ 228 (272)
|+|+..-- .--+...++.+. +.|+|||.++=+
T Consensus 129 DiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 129 DIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred eEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 99986532 111223333332 789999987644
No 194
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.79 E-value=5.8e-08 Score=79.46 Aligned_cols=96 Identities=20% Similarity=0.366 Sum_probs=80.4
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~ 201 (272)
+++|||+|.|.-++.++-..| +.+++.+|.+...+...+......++. +++++++.+.+ .. ...+||+|++
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~-----~~~~fd~v~a 121 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE-----YRESFDVVTA 121 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT-----TTT-EEEEEE
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc-----cCCCccEEEe
Confidence 899999999999999998887 789999999999999999999999997 59999999977 11 1589999998
Q ss_pred cCCccchHHHHHHHHccCCCCcEEEE
Q 024097 202 DAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 202 d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
-+.. ....+++.+.+++++||.+++
T Consensus 122 RAv~-~l~~l~~~~~~~l~~~G~~l~ 146 (184)
T PF02527_consen 122 RAVA-PLDKLLELARPLLKPGGRLLA 146 (184)
T ss_dssp ESSS-SHHHHHHHHGGGEEEEEEEEE
T ss_pred ehhc-CHHHHHHHHHHhcCCCCEEEE
Confidence 8754 455788999999999999886
No 195
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.79 E-value=6.6e-08 Score=91.24 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=83.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
....+||||||.|.+...+|...| +..++|+|+....+..+.+.....++. ++.++.+|+......+ .++++|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~----~~~sv~~ 420 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL----PNNSLDG 420 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc----CcccccE
Confidence 356899999999999999999987 789999999999998888888888876 5888888875444333 2478999
Q ss_pred EEEcCCccc-----------hHHHHHHHHccCCCCcEEEE
Q 024097 199 AFVDAEKRM-----------YQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 199 V~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi 227 (272)
|++..+.++ ...+++.+.++|+|||.|.+
T Consensus 421 i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~ 460 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF 460 (506)
T ss_pred EEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence 998654111 57799999999999998887
No 196
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.79 E-value=3.2e-08 Score=88.29 Aligned_cols=107 Identities=10% Similarity=0.131 Sum_probs=71.9
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC---------CCCCEEEEEcChhHH-HHHHH
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG---------VSHKVKIKHGLAADS-LKALI 188 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~~-~~~~~ 188 (272)
++.+|||+|||-|+-..-+...- -.+++|+|++.+.++.|+++++... ..-...++.+|.... +....
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 66899999999888666666542 4699999999999999999984311 112357788887642 22111
Q ss_pred hCCCCCceEEEEEcCC-------ccchHHHHHHHHccCCCCcEEEEe
Q 024097 189 LNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~-------~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.. ...+||+|-+-.. ......+++.+...|+|||+++..
T Consensus 140 ~~-~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT 185 (331)
T PF03291_consen 140 PP-RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT 185 (331)
T ss_dssp SS-TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cc-cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 10 1259999977543 334567899999999999999974
No 197
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=5.7e-08 Score=74.92 Aligned_cols=104 Identities=13% Similarity=0.082 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCccCH-HHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH
Q 024097 107 QAQLLAMLVQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (272)
Q Consensus 107 ~~~~l~~l~~~~~~~~VLEiG~G~G~-~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 185 (272)
.++++.......++++|||||||+|. .+..|++. +..|+++|+++..++.++++ .++++.+|..+.-.
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL 72 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence 44555555555566899999999997 77777753 57999999999988877664 26889999887443
Q ss_pred HHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 186 ~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+ -..+|+|+.--+.......+-++.+.+ |.-+++.
T Consensus 73 ~~-----y~~a~liysirpp~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 73 EI-----YKNAKLIYSIRPPRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HH-----HhcCCEEEEeCCCHHHHHHHHHHHHHc--CCCEEEE
Confidence 33 367999998777666555555555533 4445553
No 198
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.76 E-value=3.4e-08 Score=81.20 Aligned_cols=95 Identities=21% Similarity=0.245 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097 105 PDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (272)
Q Consensus 105 ~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 183 (272)
...+..++..+.. .....|+|.-||.|+.+..++...+ .|++||++|..+..|+.|++-.|..+||+|++||+++.
T Consensus 79 e~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~ 155 (263)
T KOG2730|consen 79 EKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL 155 (263)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence 3444455444333 3778999999999999999998754 89999999999999999999999999999999999998
Q ss_pred HHHHHhCCCCCceEEEEEcCC
Q 024097 184 LKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~ 204 (272)
...+... ...+|+||..++
T Consensus 156 ~~~lq~~--K~~~~~vf~spp 174 (263)
T KOG2730|consen 156 ASKLKAD--KIKYDCVFLSPP 174 (263)
T ss_pred HHHHhhh--hheeeeeecCCC
Confidence 7665321 245789998765
No 199
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.73 E-value=1.3e-08 Score=84.32 Aligned_cols=136 Identities=18% Similarity=0.177 Sum_probs=85.2
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
...+.||.|+|.|..|..++..+ --+|..+|.++.+++.|++.+... .....++.+....++.|. .++||+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~------~~~YDl 125 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE------EGKYDL 125 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----------TT-EEE
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC------CCcEeE
Confidence 45799999999999998776433 358999999999999999876431 122356777767776654 479999
Q ss_pred EEEcCC-----ccchHHHHHHHHccCCCCcEEEE-eCCCCCCc-ccCCcCCCHhhHHHHHHHHHhhhCCCeEEE
Q 024097 199 AFVDAE-----KRMYQEYFELLLQLIRVGGIIVI-DNVLWHGK-VADQMVNDAKTISIRNFNKNLMEDERVSIS 265 (272)
Q Consensus 199 V~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi-~d~~~~g~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (272)
|++--. ..+...||++|...|+|||+|++ +|+...|. +.|+.. ...|+.. +....|.+..++..+
T Consensus 126 IW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~D-sSvTRs~-~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 126 IWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEED-SSVTRSD-EHFRELFKQAGLRLV 197 (218)
T ss_dssp EEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTT-TEEEEEH-HHHHHHHHHCT-EEE
T ss_pred EEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCcc-CeeecCH-HHHHHHHHHcCCEEE
Confidence 997532 45578899999999999999999 55555554 333321 1122223 334444455555544
No 200
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=3.1e-08 Score=76.34 Aligned_cols=79 Identities=16% Similarity=0.262 Sum_probs=64.9
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
....++.++|+|||+|..+..++ .+....|+|+|++|++++++.+|.....++ +.+.++|..+.... .+.
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~------~g~ 114 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK------GGI 114 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc------CCe
Confidence 34578999999999999985554 344568999999999999999999887764 68999998875543 478
Q ss_pred eEEEEEcCC
Q 024097 196 YDFAFVDAE 204 (272)
Q Consensus 196 fDlV~~d~~ 204 (272)
||.++++.+
T Consensus 115 fDtaviNpp 123 (185)
T KOG3420|consen 115 FDTAVINPP 123 (185)
T ss_pred EeeEEecCC
Confidence 999999876
No 201
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=6.4e-07 Score=76.67 Aligned_cols=103 Identities=16% Similarity=0.094 Sum_probs=76.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.++....+-+-..+...++.+|||||+|.|..|..+++.. .+|+++|+++.+++..++.+. ..++++++++|++
T Consensus 13 L~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaL 86 (259)
T COG0030 13 LIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDAL 86 (259)
T ss_pred ccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchh
Confidence 4555555555566666677899999999999999999974 489999999999999888764 3457999999998
Q ss_pred HHH-HHHHhCCCCCceEEEEEcCCccchHHHHHHHH
Q 024097 182 DSL-KALILNGEASSYDFAFVDAEKRMYQEYFELLL 216 (272)
Q Consensus 182 ~~~-~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~ 216 (272)
... +.+ ..++.|+.+-+-.-...++.++.
T Consensus 87 k~d~~~l------~~~~~vVaNlPY~Isspii~kll 116 (259)
T COG0030 87 KFDFPSL------AQPYKVVANLPYNISSPILFKLL 116 (259)
T ss_pred cCcchhh------cCCCEEEEcCCCcccHHHHHHHH
Confidence 742 221 16788888776444444555444
No 202
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.64 E-value=2.7e-07 Score=77.01 Aligned_cols=98 Identities=23% Similarity=0.406 Sum_probs=81.8
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc-eEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS-YDF 198 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~-fDl 198 (272)
+++++|||+|.|.-++.+|-..| +.+||-+|.....+...++...+.+++ +++++++.+.+.-+. .. ||+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~-------~~~~D~ 138 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE-------KKQYDV 138 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc-------cccCcE
Confidence 68999999999999999996666 677999999999999999988889987 499999999775432 23 999
Q ss_pred EEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
|.+-+. .....+.+.+.+++++||.+++
T Consensus 139 vtsRAv-a~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 139 VTSRAV-ASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred EEeehc-cchHHHHHHHHHhcccCCcchh
Confidence 988764 3455678889999999998764
No 203
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.64 E-value=1.6e-07 Score=81.26 Aligned_cols=103 Identities=19% Similarity=0.228 Sum_probs=69.6
Q ss_pred CCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHH-HhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 120 ~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
+++|+=||+| --.+++.+++....+..|+++|+++++.+.+++.++ ..++..+++|+.+|..+...++ ..||
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl------~~~D 194 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL------KEYD 194 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------S
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc------ccCC
Confidence 4699999999 456677777655446789999999999999999888 5677889999999997754333 6899
Q ss_pred EEEEcCCcc----chHHHHHHHHccCCCCcEEEEe
Q 024097 198 FAFVDAEKR----MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 198 lV~~d~~~~----~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+||+.+-.. .-.+.++++.+.++||+.+++-
T Consensus 195 vV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 999887644 6778999999999999999986
No 204
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.64 E-value=1.4e-07 Score=82.22 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=78.0
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
..++.|||+|||+|..+...+++- ..+|+++|.| +|.+.|++.++.+++.+||+++.|...++. + +++.|
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie--L-----PEk~D 245 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE--L-----PEKVD 245 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc--C-----chhcc
Confidence 467899999999999999888763 4689999986 689999999999999999999999987742 2 47899
Q ss_pred EEEEcCC-----ccchHHHHHHHHccCCCCcEEE
Q 024097 198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIV 226 (272)
Q Consensus 198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lv 226 (272)
+|+...- .+...+-+-.+.+.|+|.|.++
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 9987643 2223333444569999999876
No 205
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.62 E-value=8e-08 Score=77.11 Aligned_cols=78 Identities=12% Similarity=0.078 Sum_probs=60.9
Q ss_pred EEEeCChhHHHHHHHHHHHhC--CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCC
Q 024097 148 VACERDARSLEVAKKYYERAG--VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVG 222 (272)
Q Consensus 148 ~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpg 222 (272)
+|+|+|++|++.|+++.+..+ ...+++++++|+.+. +. .+++||+|++... ..+....++++.++||||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~-----~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF-----DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC-----CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 589999999999987765322 234699999999764 22 2578999987654 346778999999999999
Q ss_pred cEEEEeCCC
Q 024097 223 GIIVIDNVL 231 (272)
Q Consensus 223 G~lvi~d~~ 231 (272)
|.+++.+..
T Consensus 75 G~l~i~d~~ 83 (160)
T PLN02232 75 SRVSILDFN 83 (160)
T ss_pred eEEEEEECC
Confidence 999987664
No 206
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.61 E-value=2.9e-07 Score=83.19 Aligned_cols=116 Identities=23% Similarity=0.246 Sum_probs=72.4
Q ss_pred CCCCCCCCHHHHHHHHHHHh-hc--CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097 97 RGSQMQVSPDQAQLLAMLVQ-IL--GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 173 (272)
Q Consensus 97 ~~~~~~~~~~~~~~l~~l~~-~~--~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v 173 (272)
+.+..++++.+.+.|...+. .. .+..|||+-||.|.+++.+|+.. .+|+|+|+++++++.|++|.+.+++. ++
T Consensus 171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~ 246 (352)
T PF05958_consen 171 PGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NV 246 (352)
T ss_dssp TTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SE
T ss_pred CCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cc
Confidence 35566778777766655443 22 22389999999999999999864 49999999999999999999999986 59
Q ss_pred EEEEcChhHHHHHHHh---------CC-CCCceEEEEEcCCccchH-HHHHHHH
Q 024097 174 KIKHGLAADSLKALIL---------NG-EASSYDFAFVDAEKRMYQ-EYFELLL 216 (272)
Q Consensus 174 ~~~~~d~~~~~~~~~~---------~~-~~~~fDlV~~d~~~~~~~-~~l~~~~ 216 (272)
+|+.+++.+....+.. .. ....+|+|++|++..... ..++.+.
T Consensus 247 ~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~ 300 (352)
T PF05958_consen 247 EFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK 300 (352)
T ss_dssp EEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH
T ss_pred eEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh
Confidence 9999888664322210 00 123689999999855533 3444443
No 207
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.54 E-value=4.1e-07 Score=79.00 Aligned_cols=120 Identities=12% Similarity=0.125 Sum_probs=82.1
Q ss_pred HHHHHHHHH-HHh--hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-----CEEEE
Q 024097 105 PDQAQLLAM-LVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-----KVKIK 176 (272)
Q Consensus 105 ~~~~~~l~~-l~~--~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-----~v~~~ 176 (272)
.....++.. |+. ..++..++++|||-|+-.+.+-++- -+.++|+||.+-.++.|+++++...-.. .+.|+
T Consensus 100 RnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~ 177 (389)
T KOG1975|consen 100 RNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFI 177 (389)
T ss_pred hhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEE
Confidence 334444443 333 2467789999999999888776642 4689999999999999998887542211 36889
Q ss_pred EcChhH-HHHHHHhCCCCCceEEEEEcCC-------ccchHHHHHHHHccCCCCcEEEE
Q 024097 177 HGLAAD-SLKALILNGEASSYDFAFVDAE-------KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 177 ~~d~~~-~~~~~~~~~~~~~fDlV~~d~~-------~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
.+|... .+..+... .+.+||+|-+... .....-++.++.+.|+|||+++-
T Consensus 178 ~~Dc~~~~l~d~~e~-~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg 235 (389)
T KOG1975|consen 178 AADCFKERLMDLLEF-KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG 235 (389)
T ss_pred EeccchhHHHHhccC-CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence 898765 23333211 1234999954322 23355678999999999999985
No 208
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=3.2e-06 Score=69.76 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=73.2
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH--HHHHHHhCCCCCc
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALILNGEASS 195 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~~~~~~~ 195 (272)
.++.+|+|+|+..|.|+..+++.++++++|+++|+.|-. .. ..+.++++|+.+ ....+...-...+
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~-~~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PI-PGVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cC-CCceEEeeeccCccHHHHHHHHcCCCC
Confidence 467899999999999999999999877889999998731 12 248999998865 2333322222456
Q ss_pred eEEEEEcCCc--------cc------hHHHHHHHHccCCCCcEEEEeCC
Q 024097 196 YDFAFVDAEK--------RM------YQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 196 fDlV~~d~~~--------~~------~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
+|+|++|... .+ ....++.+...|+|||.+++-..
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 7999998753 11 12345555689999999998743
No 209
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.51 E-value=6.8e-07 Score=75.97 Aligned_cols=90 Identities=19% Similarity=0.168 Sum_probs=72.5
Q ss_pred CHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097 104 SPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (272)
Q Consensus 104 ~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 183 (272)
++.+..-+..-+...++..|||||.|||..|..+.+. +.+|+++|+++.|+....++++....+++.++++||....
T Consensus 43 Np~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 43 NPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred CHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 3555555555556678889999999999999999986 4699999999999999999996666668999999999764
Q ss_pred HHHHHhCCCCCceEEEEEcCC
Q 024097 184 LKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~ 204 (272)
. ...||.++.+-+
T Consensus 120 d--------~P~fd~cVsNlP 132 (315)
T KOG0820|consen 120 D--------LPRFDGCVSNLP 132 (315)
T ss_pred C--------CcccceeeccCC
Confidence 2 256899987654
No 210
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.51 E-value=7.3e-07 Score=75.74 Aligned_cols=148 Identities=13% Similarity=0.113 Sum_probs=94.4
Q ss_pred CCCCCCCHHHHHHHHHHH-----hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCC
Q 024097 98 GSQMQVSPDQAQLLAMLV-----QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK 172 (272)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~-----~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~ 172 (272)
+.....+..+.+-+.... ...+..++||||+|.|..|..++..+. +|+++|.|+.|.. ++++.|.
T Consensus 68 G~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~----rL~~kg~--- 137 (265)
T PF05219_consen 68 GSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRW----RLSKKGF--- 137 (265)
T ss_pred CcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHH----HHHhCCC---
Confidence 344466666554444433 222567899999999999999998876 7999999998854 4444453
Q ss_pred EEEEEcChhHHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCC-CCCcc-------cCCc-
Q 024097 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVL-WHGKV-------ADQM- 240 (272)
Q Consensus 173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~-~~g~~-------~~~~- 240 (272)
+++. ..+... .+.+||+|.+-.. .......++.+++.|+|+|.+++.-++ |.-.| ..|.
T Consensus 138 -~vl~--~~~w~~------~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e 208 (265)
T PF05219_consen 138 -TVLD--IDDWQQ------TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE 208 (265)
T ss_pred -eEEe--hhhhhc------cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh
Confidence 3332 222211 1468999987543 344667899999999999999987655 22111 1121
Q ss_pred ----CCCHhhHHHHHHHHHhhhCCCeEEE
Q 024097 241 ----VNDAKTISIRNFNKNLMEDERVSIS 265 (272)
Q Consensus 241 ----~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (272)
........+..|. .+..--+|+..
T Consensus 209 ~l~~~g~~~E~~v~~l~-~v~~p~GF~v~ 236 (265)
T PF05219_consen 209 LLPVKGATFEEQVSSLV-NVFEPAGFEVE 236 (265)
T ss_pred hcCCCCCcHHHHHHHHH-HHHHhcCCEEE
Confidence 1222344677777 55566677654
No 211
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.51 E-value=1.9e-06 Score=76.13 Aligned_cols=106 Identities=20% Similarity=0.301 Sum_probs=84.1
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHH--HHHhC---C-CCCEEEEEcChhHHHHHHHhCC
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY--YERAG---V-SHKVKIKHGLAADSLKALILNG 191 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~~---~-~~~v~~~~~d~~~~~~~~~~~~ 191 (272)
...++||-+|.|.|.....+.+. |.-.+++-+|.+|+|++.++++ ++..+ + +.|++++..|+..++..-
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---- 362 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---- 362 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence 35579999999999999888874 5467999999999999999843 32222 1 358999999999988764
Q ss_pred CCCceEEEEEcCCccc--------hHHHHHHHHccCCCCcEEEEeC
Q 024097 192 EASSYDFAFVDAEKRM--------YQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~--------~~~~l~~~~~lLkpgG~lvi~d 229 (272)
.+.||.|++|-..++ ..+|+..+.+.|+++|.+|+..
T Consensus 363 -~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 363 -ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred -cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 579999999865322 3567888899999999999863
No 212
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.50 E-value=5.4e-07 Score=78.73 Aligned_cols=106 Identities=18% Similarity=0.199 Sum_probs=72.7
Q ss_pred CCCEEEEEcCccCHHHHH----HHHHCC---CCcEEEEEeCChhHHHHHHHHH------------------HHh------
Q 024097 119 GAQRCIEVGVYTGYSSLA----IALVLP---ESGCLVACERDARSLEVAKKYY------------------ERA------ 167 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~----la~~~~---~~~~v~~iD~s~~~~~~a~~~~------------------~~~------ 167 (272)
++-+|+-.||.+|--.-. +.+..+ .+.+|+|+|+|+.+++.|++-. ...
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 346999999999974433 333322 1358999999999999987641 100
Q ss_pred ------CCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 024097 168 ------GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 168 ------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
.+..+|+|...|..+.... ..+.||+||+-.. .......++.+.+.|+|||+|++..
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~-----~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWA-----VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCc-----cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 0224567777777652111 1378999998543 3456778999999999999999854
No 213
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.49 E-value=1e-06 Score=73.42 Aligned_cols=98 Identities=15% Similarity=0.238 Sum_probs=66.2
Q ss_pred EEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEc
Q 024097 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVD 202 (272)
Q Consensus 123 VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d 202 (272)
|.||||-.|+...++++.-. ..+++++|+++..++.|+++++..++.+++++..+|.++.++. .+..|.|++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~------~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP------GEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G------GG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC------CCCCCEEEEe
Confidence 68999999999999998643 4589999999999999999999999999999999999887653 1337888875
Q ss_pred CC-ccchHHHHHHHHccCCCCcEEEE
Q 024097 203 AE-KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 203 ~~-~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+- -....++++.....++....+|+
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEE
Confidence 43 22233444444444433333443
No 214
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.46 E-value=1.7e-06 Score=84.99 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHHHhh-cCCCEEEEEcCccCHHHHHHHHHC---CC---------------------------------
Q 024097 101 MQVSPDQAQLLAMLVQI-LGAQRCIEVGVYTGYSSLAIALVL---PE--------------------------------- 143 (272)
Q Consensus 101 ~~~~~~~~~~l~~l~~~-~~~~~VLEiG~G~G~~~~~la~~~---~~--------------------------------- 143 (272)
.++.+..+.-|..+... .++..++|-+||+|.+.+..|... ++
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 35666676666666655 457899999999999998876531 11
Q ss_pred -----CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC
Q 024097 144 -----SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 144 -----~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
..+++|+|+++.+++.|++|+..+|+.+++++.++|+.+..... ..++||+|+++.+
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~----~~~~~d~IvtNPP 312 (702)
T PRK11783 251 GLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL----PKGPTGLVISNPP 312 (702)
T ss_pred cccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc----ccCCCCEEEECCC
Confidence 23799999999999999999999999888999999998753211 1257999999976
No 215
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.43 E-value=1.9e-06 Score=76.59 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=84.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC------CCCcEEEEEeCChhHHHHHHHHHHHhCCCC-C
Q 024097 100 QMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL------PESGCLVACERDARSLEVAKKYYERAGVSH-K 172 (272)
Q Consensus 100 ~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~------~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~ 172 (272)
..-.......++..++...++.+|+|-.||+|.+...+.+.+ ....+++|+|+++.++..|+-++.-.+... .
T Consensus 27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~ 106 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSN 106 (311)
T ss_dssp GC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBG
T ss_pred eeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccc
Confidence 345667888999999988888899999999999998888753 125799999999999999998876665543 2
Q ss_pred EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc------------------------chHHHHHHHHccCCCCcEEEE
Q 024097 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------------MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~------------------------~~~~~l~~~~~lLkpgG~lvi 227 (272)
..+..+|........ ....||+|+.+.+.. ....+++.+.+.|++||.+++
T Consensus 107 ~~i~~~d~l~~~~~~----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~ 181 (311)
T PF02384_consen 107 INIIQGDSLENDKFI----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI 181 (311)
T ss_dssp CEEEES-TTTSHSCT----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred ccccccccccccccc----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence 468888876532210 136899999876511 012478889999999997544
No 216
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.42 E-value=5e-06 Score=71.86 Aligned_cols=104 Identities=15% Similarity=0.228 Sum_probs=73.9
Q ss_pred CCEEEEEcCccCH----HHHHHHHHCCC----CcEEEEEeCChhHHHHHHHHHHH-----hC------------------
Q 024097 120 AQRCIEVGVYTGY----SSLAIALVLPE----SGCLVACERDARSLEVAKKYYER-----AG------------------ 168 (272)
Q Consensus 120 ~~~VLEiG~G~G~----~~~~la~~~~~----~~~v~~iD~s~~~~~~a~~~~~~-----~~------------------ 168 (272)
+-+|.-.||+||- .++.+.+..+. ..+|+|+|+|..+++.|+.-.=. .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 6799999999996 44445555542 46899999999999988642100 01
Q ss_pred -----CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeC
Q 024097 169 -----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 169 -----~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
+...|.|...|..+..+ . .+.||+|||-.. .......++..+..|+|||+|++-.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~-~-----~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSP-F-----LGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCcc-c-----cCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 11346666666655332 2 478999998754 4556778999999999999999853
No 217
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.41 E-value=4.8e-07 Score=73.97 Aligned_cols=98 Identities=19% Similarity=0.265 Sum_probs=62.9
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--CCC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EAS 194 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~~~ 194 (272)
++.+|||+||++|+++..+++...+.++|+|+|+.+. ... ..+.++.+|..+. ...+.... ..+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhcccccc
Confidence 4589999999999999999998744689999999876 111 2466666665431 12221110 126
Q ss_pred ceEEEEEcCCc--------------cchHHHHHHHHccCCCCcEEEEe
Q 024097 195 SYDFAFVDAEK--------------RMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 195 ~fDlV~~d~~~--------------~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+||+|++|... .-....+..+.+.|+|||.+|+-
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K 138 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK 138 (181)
T ss_dssp SESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence 89999999831 01223344556889999998875
No 218
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.7e-06 Score=79.64 Aligned_cols=125 Identities=19% Similarity=0.210 Sum_probs=91.7
Q ss_pred CCCCCCCHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCE
Q 024097 98 GSQMQVSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKV 173 (272)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v 173 (272)
+...+++...++.+...+.. ..++.++|+.||||.+++.+++.. .+|+|||++++.++.|++|...+|.+ +.
T Consensus 358 ~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis-Na 433 (534)
T KOG2187|consen 358 GAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS-NA 433 (534)
T ss_pred chhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc-ce
Confidence 44457777777777776654 456789999999999999999865 49999999999999999999999997 59
Q ss_pred EEEEcChhHHHHHHHhCCCCCceE-EEEEcCCccch-HHHHHHHHccCCCCcEEEE
Q 024097 174 KIKHGLAADSLKALILNGEASSYD-FAFVDAEKRMY-QEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 174 ~~~~~d~~~~~~~~~~~~~~~~fD-lV~~d~~~~~~-~~~l~~~~~lLkpgG~lvi 227 (272)
+|++|-+.+..+.+..... ++-+ ++++|.+.... ..+++.+.+.-++.-.+.+
T Consensus 434 ~Fi~gqaE~~~~sl~~~~~-~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv 488 (534)
T KOG2187|consen 434 TFIVGQAEDLFPSLLTPCC-DSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV 488 (534)
T ss_pred eeeecchhhccchhcccCC-CCCceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence 9999988887777654321 2334 66778775443 3445555544445554444
No 219
>PRK10742 putative methyltransferase; Provisional
Probab=98.41 E-value=2.6e-06 Score=72.30 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=72.6
Q ss_pred HHHHHHHhhcCCC--EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh------C--CCCCEEEEEc
Q 024097 109 QLLAMLVQILGAQ--RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------G--VSHKVKIKHG 178 (272)
Q Consensus 109 ~~l~~l~~~~~~~--~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------~--~~~~v~~~~~ 178 (272)
+.+...+...++. +|||.-+|+|..++.++.. +++|+++|.++......++++++. + +..+++++++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4555556556666 9999999999999999975 678999999999999999999885 2 2257999999
Q ss_pred ChhHHHHHHHhCCCCCceEEEEEcCC
Q 024097 179 LAADSLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 179 d~~~~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
|+.+.+... ..+||+||+|..
T Consensus 153 da~~~L~~~-----~~~fDVVYlDPM 173 (250)
T PRK10742 153 SSLTALTDI-----TPRPQVVYLDPM 173 (250)
T ss_pred cHHHHHhhC-----CCCCcEEEECCC
Confidence 999988764 457999999975
No 220
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.39 E-value=2.9e-06 Score=70.73 Aligned_cols=112 Identities=21% Similarity=0.178 Sum_probs=68.1
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH-------hCC-CCCEEEEEcChhHHH-
Q 024097 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER-------AGV-SHKVKIKHGLAADSL- 184 (272)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~-------~~~-~~~v~~~~~d~~~~~- 184 (272)
.+...+....+|||||.|......+...+ -.+.+|||+.+...+.|+...+. .|. ..++++.++|+.+..
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~ 115 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDF 115 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHH
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHh
Confidence 34455678999999999999888886654 44699999999998887654432 233 346889999987632
Q ss_pred -HHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 185 -KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 185 -~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
... -...|+||++.. .+.....+......||+|..||--.-+
T Consensus 116 ~~~~-----~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 116 VKDI-----WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp HHHH-----GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred Hhhh-----hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 222 135799999865 334445567777889999888764433
No 221
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.39 E-value=1.9e-06 Score=72.91 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=58.7
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHH-HHHHHHHhCCCCCEE-EEEcChhHHHHHHHhCCCCCc
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEV-AKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~-a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~ 195 (272)
.++++|||+|||+|.++..+++. + ..+|+++|++++++.. .+++ .++. +...|+......... .+-..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~-~d~~~ 143 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF-PDFAT 143 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC-CCcee
Confidence 46779999999999999999986 3 4689999999987754 2221 1222 222233211110000 01246
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+|++|+... ..+..+.++|++ |.+++
T Consensus 144 ~DvsfiS~~-----~~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 144 FDVSFISLI-----SILPELDLLLNP-NDLTL 169 (228)
T ss_pred eeEEEeehH-----hHHHHHHHHhCc-CeEEE
Confidence 777776432 357788889999 76664
No 222
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.34 E-value=4.6e-06 Score=74.86 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=94.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCC---C----------------------------Cc-----
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLP---E----------------------------SG----- 145 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~---~----------------------------~~----- 145 (272)
.+.+..+.-|-.+..-.+...++|-=||+|.+.+..|...+ | .+
T Consensus 174 pLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~ 253 (381)
T COG0116 174 PLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKE 253 (381)
T ss_pred CchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCc
Confidence 56677777777777777778999999999999998876542 1 11
Q ss_pred --EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc-----------cchHHHH
Q 024097 146 --CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK-----------RMYQEYF 212 (272)
Q Consensus 146 --~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~-----------~~~~~~l 212 (272)
.++|+|+++.+++.|+.|.+.+|+.+.|+|.++|+.+.-+. .+.+|+|+++.+- .-|..+.
T Consensus 254 ~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg 327 (381)
T COG0116 254 LPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP------LEEYGVVISNPPYGERLGSEALVAKLYREFG 327 (381)
T ss_pred cceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC------CCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence 37899999999999999999999999999999999765432 1689999999761 1355666
Q ss_pred HHHHccCCCCcEEEEe
Q 024097 213 ELLLQLIRVGGIIVID 228 (272)
Q Consensus 213 ~~~~~lLkpgG~lvi~ 228 (272)
+.+.+.++.-+..|+.
T Consensus 328 ~~lk~~~~~ws~~v~t 343 (381)
T COG0116 328 RTLKRLLAGWSRYVFT 343 (381)
T ss_pred HHHHHHhcCCceEEEE
Confidence 6667888887777764
No 223
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.33 E-value=8.8e-06 Score=67.03 Aligned_cols=107 Identities=19% Similarity=0.176 Sum_probs=83.5
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++.+||+||-|-|...-.+-++-| .+-+-||..|+.++..++.- ....++|.+..|...+.++.+. ++.||
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~----d~~FD 171 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP----DKHFD 171 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc----ccCcc
Confidence 5788999999999988877766533 46678999999987776532 2224678899999988888774 46799
Q ss_pred EEEEcCC---ccchHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 198 FAFVDAE---KRMYQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 198 lV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
-|+-|.- -++...+.+.+.++|||+|++-+-|.+-
T Consensus 172 GI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~ 209 (271)
T KOG1709|consen 172 GIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG 209 (271)
T ss_pred eeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence 9999876 3445678889999999999998876553
No 224
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.33 E-value=9.3e-07 Score=71.19 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=78.7
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
..+.|+|+|+|..+...+++. -+|+++|.+|...++|++|+.-.|.. +++++.+|+.+.. -+..|.|+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~--------fe~ADvvi 101 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYD--------FENADVVI 101 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccccccc--------ccccceeH
Confidence 689999999999999888763 49999999999999999998777765 5999999998752 24678887
Q ss_pred EcCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 201 VDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 201 ~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
+..- .+.....+..+.+.||..+.++-..+.
T Consensus 102 cEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 102 CEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred HHHhhHHhhcccccHHHHHHHHHhhcCCccccHHHh
Confidence 6432 334556788888899999988765544
No 225
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.33 E-value=4.9e-07 Score=74.83 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=65.7
Q ss_pred CCCEEEEEcCccCHHHHHH----HHHCC----CCcEEEEEeCChhHHHHHHHH--------------HHHh-----C---
Q 024097 119 GAQRCIEVGVYTGYSSLAI----ALVLP----ESGCLVACERDARSLEVAKKY--------------YERA-----G--- 168 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~l----a~~~~----~~~~v~~iD~s~~~~~~a~~~--------------~~~~-----~--- 168 (272)
++-+|+-.||++|--+-.+ .+..+ ...+|+|+|+|+.+++.|++- .++. +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 4569999999999744333 33111 135899999999999988652 1110 1
Q ss_pred -----CCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 169 -----VSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 169 -----~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
+.++|+|...|..+..+. .+.||+||+-.. .......++.+.+.|+|||+|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~------~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPP------FGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcc------cCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 125789999988872222 479999999765 34457789999999999999998543
No 226
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.29 E-value=1.8e-06 Score=66.96 Aligned_cols=109 Identities=17% Similarity=0.272 Sum_probs=73.0
Q ss_pred EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC------------ccchHHHHH
Q 024097 146 CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE------------KRMYQEYFE 213 (272)
Q Consensus 146 ~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~------------~~~~~~~l~ 213 (272)
+|+++|+.+++++.++++++..++.+++++++..-......+ + .+++|+++.+-. .......++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i-~---~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYI-P---EGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT------S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhC-c---cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 689999999999999999999999889999988765543333 1 248999886522 223556789
Q ss_pred HHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhhCCCeEEE
Q 024097 214 LLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLMEDERVSIS 265 (272)
Q Consensus 214 ~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 265 (272)
.+.++|+|||+|++- .+.|.... .....++.+|.+.|- ...|.+.
T Consensus 77 ~al~lL~~gG~i~iv--~Y~GH~gG----~eE~~av~~~~~~L~-~~~~~V~ 121 (140)
T PF06962_consen 77 AALELLKPGGIITIV--VYPGHPGG----KEESEAVEEFLASLD-QKEFNVL 121 (140)
T ss_dssp HHHHHEEEEEEEEEE--E--STCHH----HHHHHHHHHHHHTS--TTTEEEE
T ss_pred HHHHhhccCCEEEEE--EeCCCCCC----HHHHHHHHHHHHhCC-cceEEEE
Confidence 999999999999984 66664321 234667888877762 2245443
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.29 E-value=2e-05 Score=61.85 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=64.5
Q ss_pred HHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhC--CCCCEEEEEc
Q 024097 108 AQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAG--VSHKVKIKHG 178 (272)
Q Consensus 108 ~~~l~~l~~~----~~~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~--~~~~v~~~~~ 178 (272)
.+++..+... .+..+|+|+|||.|+.+..++..+ .++.+|+++|.++..++.+.+..+..+ +..++++..+
T Consensus 10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 3444554444 677899999999999999999833 236799999999999999998888777 4456677766
Q ss_pred ChhHHHHHHHhCCCCCceEEEEEcCC
Q 024097 179 LAADSLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 179 d~~~~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
+..+... ....++++--+.
T Consensus 90 ~~~~~~~-------~~~~~~~vgLHa 108 (141)
T PF13679_consen 90 DIADESS-------SDPPDILVGLHA 108 (141)
T ss_pred chhhhcc-------cCCCeEEEEeec
Confidence 5543221 245666665444
No 228
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.26 E-value=1.6e-05 Score=69.99 Aligned_cols=84 Identities=24% Similarity=0.187 Sum_probs=68.8
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++..++|.-+|.|+.+..+++.++ .++|+|+|.++.+++.+++.++. ..+++++++++..+....+... +..++
T Consensus 18 ~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~nF~~l~~~l~~~-~~~~v 93 (305)
T TIGR00006 18 IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDNFANFFEHLDEL-LVTKI 93 (305)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCCHHHHHHHHHhc-CCCcc
Confidence 34667999999999999999999987 49999999999999999998864 3468999999998765544222 23579
Q ss_pred EEEEEcCC
Q 024097 197 DFAFVDAE 204 (272)
Q Consensus 197 DlV~~d~~ 204 (272)
|.|+.|-.
T Consensus 94 DgIl~DLG 101 (305)
T TIGR00006 94 DGILVDLG 101 (305)
T ss_pred cEEEEecc
Confidence 99998855
No 229
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=98.26 E-value=8.6e-06 Score=70.11 Aligned_cols=142 Identities=19% Similarity=0.249 Sum_probs=108.7
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--CC-CCCEEEEEcChhHHHHHHHhCCC
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--GV-SHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
.+.++++||-||-|-|......+++ +.-..++-+|++...++..++.+... |. ..++.+..||...++....
T Consensus 118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~---- 192 (337)
T KOG1562|consen 118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK---- 192 (337)
T ss_pred cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence 4567899999999999988887776 43568999999999999999988754 33 3579999999988877652
Q ss_pred CCceEEEEEcCCcc-------chHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcC-CCHhhHHHHHHHHHhhhCCCeEE
Q 024097 193 ASSYDFAFVDAEKR-------MYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMV-NDAKTISIRNFNKNLMEDERVSI 264 (272)
Q Consensus 193 ~~~fDlV~~d~~~~-------~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 264 (272)
.++||+|+.|.... -...+++.+.+.||+||+++... +..| +-....-+++|...+...-.|-.
T Consensus 193 ~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~--------ec~wl~~~~i~e~r~~~~~~f~~t~ya~ 264 (337)
T KOG1562|consen 193 ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG--------ECMWLHLDYIKEGRSFCYVIFDLTAYAI 264 (337)
T ss_pred cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec--------ceehHHHHHHHHHHHhHHHhcCccceee
Confidence 58999999886522 24567888899999999998741 2122 23344568888888888888888
Q ss_pred EEeecC
Q 024097 265 SMKEVQ 270 (272)
Q Consensus 265 ~~lp~~ 270 (272)
+.+|+.
T Consensus 265 ttvPTy 270 (337)
T KOG1562|consen 265 TTVPTY 270 (337)
T ss_pred ecCCCC
Confidence 888864
No 230
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.24 E-value=2.2e-05 Score=69.78 Aligned_cols=109 Identities=14% Similarity=0.014 Sum_probs=77.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCC---CcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEcChhHHHHHHHhCCCCC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
++..++|+|||.|.-+..+++++.+ ..+++++|+|.++++.+.+++....... .+.-+.+|..+.+..+.......
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~ 155 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS 155 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence 4558999999999999888887642 3579999999999999999887333332 24448899877654432110123
Q ss_pred ceEEEEEcC-C-----ccchHHHHHHHHc-cCCCCcEEEE
Q 024097 195 SYDFAFVDA-E-----KRMYQEYFELLLQ-LIRVGGIIVI 227 (272)
Q Consensus 195 ~fDlV~~d~-~-----~~~~~~~l~~~~~-lLkpgG~lvi 227 (272)
...+++.-+ . ......+++.+.+ .|+|||.+++
T Consensus 156 ~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 156 RPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 346665433 2 4446678999998 9999999887
No 231
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.24 E-value=8e-06 Score=77.76 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=59.4
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCC-------CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 191 (272)
...+|||.|||+|.+...+++.++. ..+++++|+++..+..++.++...+. ..+.+..+|.......... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~-~ 108 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIE-S 108 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeecccccccccccc-c
Confidence 3468999999999999999887631 24789999999999999999876652 2356666665532111100 0
Q ss_pred CCCceEEEEEcCC
Q 024097 192 EASSYDFAFVDAE 204 (272)
Q Consensus 192 ~~~~fDlV~~d~~ 204 (272)
..+.||+|+.+.+
T Consensus 109 ~~~~fD~IIgNPP 121 (524)
T TIGR02987 109 YLDLFDIVITNPP 121 (524)
T ss_pred ccCcccEEEeCCC
Confidence 1358999998765
No 232
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.23 E-value=2.9e-06 Score=69.89 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=72.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
+++.| ...++..+....+...|.|+|||.+..+. .++.+.+|..+|+... .+ .+..+|.
T Consensus 55 WP~nP-vd~iI~~l~~~~~~~viaD~GCGdA~la~----~~~~~~~V~SfDLva~--------------n~--~Vtacdi 113 (219)
T PF05148_consen 55 WPVNP-VDVIIEWLKKRPKSLVIADFGCGDAKLAK----AVPNKHKVHSFDLVAP--------------NP--RVTACDI 113 (219)
T ss_dssp SSS-H-HHHHHHHHCTS-TTS-EEEES-TT-HHHH----H--S---EEEEESS-S--------------ST--TEEES-T
T ss_pred CCCCc-HHHHHHHHHhcCCCEEEEECCCchHHHHH----hcccCceEEEeeccCC--------------CC--CEEEecC
Confidence 45555 44566666665566799999999998774 3443457999998642 12 3556777
Q ss_pred hHHHHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCCcCCCHhhHHHHHHHHHhhh
Q 024097 181 ADSLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQMVNDAKTISIRNFNKNLME 258 (272)
Q Consensus 181 ~~~~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~~~~~~~~~~~~~~~~~l~~ 258 (272)
... |- ++++.|+++..-. -.++..++.++.|+||+||.+.|.++... .. .++.|.+.+..
T Consensus 114 a~v-PL-----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SR--f~----------~~~~F~~~~~~ 175 (219)
T PF05148_consen 114 ANV-PL-----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSR--FE----------NVKQFIKALKK 175 (219)
T ss_dssp TS--S-------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG---S-----------HHHHHHHHHC
T ss_pred ccC-cC-----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEeccc--Cc----------CHHHHHHHHHH
Confidence 442 21 2689999886544 45788999999999999999999876532 11 25778777653
Q ss_pred CCCeE
Q 024097 259 DERVS 263 (272)
Q Consensus 259 ~~~~~ 263 (272)
=+|.
T Consensus 176 -~GF~ 179 (219)
T PF05148_consen 176 -LGFK 179 (219)
T ss_dssp -TTEE
T ss_pred -CCCe
Confidence 2444
No 233
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.20 E-value=1.7e-05 Score=70.09 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=76.0
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
-...+|+|.|.|..+..+...+| ++-+++.+...+..++.++. .| |+.+.||.....| +-|+|
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P---------~~daI 240 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTP---------KGDAI 240 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccCC---------CcCeE
Confidence 37899999999999999998776 68999999888877777764 33 7888888876533 34688
Q ss_pred EEc-----CCccchHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 200 FVD-----AEKRMYQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 200 ~~d-----~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
|+- -..++..++|++|++.|+|||.|++-+...+
T Consensus 241 ~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 241 WMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred EEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 853 2255678899999999999998888666544
No 234
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.20 E-value=1.3e-05 Score=66.76 Aligned_cols=108 Identities=15% Similarity=0.131 Sum_probs=74.5
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
+...++.+||-+|+.+|.....++...++.|.|+++|.++...+..-...++ ..++-.+.+|+..-.... .--+
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~---R~NIiPIl~DAr~P~~Y~---~lv~ 142 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK---RPNIIPILEDARHPEKYR---MLVE 142 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH---STTEEEEES-TTSGGGGT---TTS-
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc---CCceeeeeccCCChHHhh---cccc
Confidence 3456788999999999999999999998899999999999665443332222 236888999986421110 0136
Q ss_pred ceEEEEEcCCccchHH-HHHHHHccCCCCcEEEEe
Q 024097 195 SYDFAFVDAEKRMYQE-YFELLLQLIRVGGIIVID 228 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~-~l~~~~~lLkpgG~lvi~ 228 (272)
..|+||.|-..++..+ +..++...||+||.+++-
T Consensus 143 ~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 143 MVDVIFQDVAQPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp -EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEecCCChHHHHHHHHHHHhhccCCcEEEEE
Confidence 8999999988666544 456677899999998873
No 235
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=98.19 E-value=5.2e-06 Score=70.94 Aligned_cols=140 Identities=21% Similarity=0.295 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHhh----cCCCEEEEEcCccCHHHHHHHHHC---C-CCcEEEEEeCCh--------------------
Q 024097 103 VSPDQAQLLAMLVQI----LGAQRCIEVGVYTGYSSLAIALVL---P-ESGCLVACERDA-------------------- 154 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~----~~~~~VLEiG~G~G~~~~~la~~~---~-~~~~v~~iD~s~-------------------- 154 (272)
++......|..++.. .-+..|+|+||..|.+++.++..+ . .+-+++++|--+
T Consensus 54 ~g~~Rl~~L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~ 133 (248)
T PF05711_consen 54 IGRERLDNLYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHE 133 (248)
T ss_dssp SHHHHHHHHHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCG
T ss_pred cCHHHHHHHHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhh
Confidence 444444444444432 345689999999999887665432 2 234688888422
Q ss_pred ------hHHHHHHHHHHHhCC-CCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC-ccchHHHHHHHHccCCCCcEEE
Q 024097 155 ------RSLEVAKKYYERAGV-SHKVKIKHGLAADSLKALILNGEASSYDFAFVDAE-KRMYQEYFELLLQLIRVGGIIV 226 (272)
Q Consensus 155 ------~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~-~~~~~~~l~~~~~lLkpgG~lv 226 (272)
-..+..++++.+.++ .++++++.|.+.+.++.. ..+++-++.+|.+ -+.....|+.+++.|.|||+|+
T Consensus 134 ~~~~~~~s~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~----p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 134 YNGYLAVSLEEVRENFARYGLLDDNVRFVKGWFPDTLPDA----PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp CCHHCTHHHHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-----TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEE
T ss_pred cccccccCHHHHHHHHHHcCCCcccEEEECCcchhhhccC----CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEE
Confidence 123445555555554 458999999998877643 1367888888887 4446678999999999999999
Q ss_pred EeCCCCCCcccCCcCCCHhhHHHHHHHHHh
Q 024097 227 IDNVLWHGKVADQMVNDAKTISIRNFNKNL 256 (272)
Q Consensus 227 i~d~~~~g~~~~~~~~~~~~~~~~~~~~~l 256 (272)
+||..++| -.+|+.+|.+..
T Consensus 210 ~DDY~~~g----------cr~AvdeF~~~~ 229 (248)
T PF05711_consen 210 FDDYGHPG----------CRKAVDEFRAEH 229 (248)
T ss_dssp ESSTTTHH----------HHHHHHHHHHHT
T ss_pred EeCCCChH----------HHHHHHHHHHHc
Confidence 99987633 246788886653
No 236
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.15 E-value=7.6e-06 Score=63.96 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=50.6
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
.++|||||.|..+.++++..+ +++++++|+++.+.+.++++++.++.. ++++++....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999999998765 579999999999999999999888775 48888765543
No 237
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.10 E-value=1.4e-05 Score=71.84 Aligned_cols=110 Identities=19% Similarity=0.298 Sum_probs=87.5
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH-HHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL-KALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~ 194 (272)
...++.+|||..+..|.-|.++|..+...|.|++.|.+...++..+.++.+.|+.+ ..+...|..+.. ..+ .+
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~~-----~~ 311 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKEF-----PG 311 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccccccc-----Cc
Confidence 34577899999999999999999998878999999999999999999999999875 556666665432 111 34
Q ss_pred ceEEEEEcCCccc-------------------------hHHHHHHHHccCCCCcEEEEeCCC
Q 024097 195 SYDFAFVDAEKRM-------------------------YQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 195 ~fDlV~~d~~~~~-------------------------~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
+||-|++|++... ..+.+..+..++++||+||...+.
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 8999999875211 345677778999999999987553
No 238
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.09 E-value=1.4e-05 Score=69.37 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 101 MQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 101 ~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
..+++...+.+...+...++..|||||+|.|.+|..+++.. .+++++|+++.+.+..++.+. ...+++++.+|+
T Consensus 12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~ 85 (262)
T PF00398_consen 12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDF 85 (262)
T ss_dssp EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-T
T ss_pred eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecch
Confidence 35677777777777777788999999999999999999985 599999999999998888764 345799999999
Q ss_pred hHHHHHHHhCCCCCceEEEEEcCCccchHHHHHHHHc
Q 024097 181 ADSLKALILNGEASSYDFAFVDAEKRMYQEYFELLLQ 217 (272)
Q Consensus 181 ~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~ 217 (272)
.++...... ......|+.+-+..-...++..+..
T Consensus 86 l~~~~~~~~---~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 86 LKWDLYDLL---KNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp TTSCGGGHC---SSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred hccccHHhh---cCCceEEEEEecccchHHHHHHHhh
Confidence 874221000 1345667766555444456666654
No 239
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=98.06 E-value=0.00013 Score=59.19 Aligned_cols=148 Identities=16% Similarity=0.168 Sum_probs=98.4
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHC---CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVL---PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~---~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
.-+|..-..++.++-..+|..|+|+|.-.|++++++|... +...+|+++|++-..+.-+... ..+|.|+.|
T Consensus 52 ~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~eg 125 (237)
T COG3510 52 IKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEG 125 (237)
T ss_pred cCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeC
Confidence 3456677777888888899999999999999999998753 3346899999987654332211 347999999
Q ss_pred ChhHHH--HHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCCCCCcccCC--c-CCCHhhHHHHH
Q 024097 179 LAADSL--KALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKVADQ--M-VNDAKTISIRN 251 (272)
Q Consensus 179 d~~~~~--~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~--~-~~~~~~~~~~~ 251 (272)
+..+.. .+.......-+-=+|+.|.. ..+...-++...++|.-|-++++.|....+..... . ..+....++++
T Consensus 126 ss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ 205 (237)
T COG3510 126 SSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEA 205 (237)
T ss_pred CCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHH
Confidence 887621 11111011112224445544 44456667777899999999999998887765422 1 12345667777
Q ss_pred HHHH
Q 024097 252 FNKN 255 (272)
Q Consensus 252 ~~~~ 255 (272)
|++.
T Consensus 206 ylr~ 209 (237)
T COG3510 206 YLRE 209 (237)
T ss_pred HHHh
Confidence 7654
No 240
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.05 E-value=1.8e-05 Score=72.03 Aligned_cols=107 Identities=17% Similarity=0.242 Sum_probs=81.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCC-CEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSH-KVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
++-+|||.=+|+|.=++.++..++...+|+.-|+|+++++..++|++.+++.+ ++++.+.|+...+... ...||
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~-----~~~fD 123 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSR-----QERFD 123 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHS-----TT-EE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhc-----cccCC
Confidence 34589999999999999999987645699999999999999999999999987 7999999998866421 57899
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
+|=+|.- .....|++.+.+.++.||+|.+....
T Consensus 124 ~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 124 VIDLDPF-GSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEE--S-S--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred EEEeCCC-CCccHhHHHHHHHhhcCCEEEEeccc
Confidence 9988864 34557999999999999999996543
No 241
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.01 E-value=5.9e-05 Score=62.58 Aligned_cols=95 Identities=17% Similarity=0.230 Sum_probs=75.2
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
.+.++.||||-.|+...++.+..+ ...+++.|+++..++.|.++++++++.+++++..+|.+..+.. +..+|.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~------~d~~d~ 88 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL------EDEIDV 88 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc------cCCcCE
Confidence 345699999999999999998765 6789999999999999999999999999999999999765542 357999
Q ss_pred EEEcCC-ccchHHHHHHHHccCC
Q 024097 199 AFVDAE-KRMYQEYFELLLQLIR 220 (272)
Q Consensus 199 V~~d~~-~~~~~~~l~~~~~lLk 220 (272)
|++.+- -.-...++++-.+.|+
T Consensus 89 ivIAGMGG~lI~~ILee~~~~l~ 111 (226)
T COG2384 89 IVIAGMGGTLIREILEEGKEKLK 111 (226)
T ss_pred EEEeCCcHHHHHHHHHHhhhhhc
Confidence 988654 2224445555554444
No 242
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.93 E-value=4.1e-05 Score=66.81 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=63.3
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
..+++|||+|+|.|..+..+.+.++.-.+++++|.|+.+.+.++..++........... .+. .... .+....|
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~---~~~~---~~~~~~D 104 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVL---YRDF---LPFPPDD 104 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhh---hccc---ccCCCCc
Confidence 46789999999999877777777774568999999999999999877543221111111 111 1000 0123459
Q ss_pred EEEEcCC-----ccchHHHHHHHHccCCCCcEEEE
Q 024097 198 FAFVDAE-----KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 198 lV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+|++... ......+++.+++.+.+ +||+
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVl 137 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP--VLVL 137 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC--cEEE
Confidence 9987643 23345567777776665 4444
No 243
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.92 E-value=3.2e-05 Score=67.66 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=48.8
Q ss_pred CEEEEEcCccCHH-HHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-CCCCCEEEEEcChhH-HHHHHHhCCCCCceE
Q 024097 121 QRCIEVGVYTGYS-SLAIALVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGLAAD-SLKALILNGEASSYD 197 (272)
Q Consensus 121 ~~VLEiG~G~G~~-~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~~~~~~~~~~~~~fD 197 (272)
-++||||||.-.. .+.-++. . +.+++|+|+++..++.|+++++.+ ++.++|+++...-.. ++..+.. ..+.||
T Consensus 104 v~glDIGTGAscIYpLLg~~~-~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~--~~e~~d 179 (299)
T PF05971_consen 104 VRGLDIGTGASCIYPLLGAKL-Y-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ--PNERFD 179 (299)
T ss_dssp -EEEEES-TTTTHHHHHHHHH-H---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT----S-EE
T ss_pred eEeecCCccHHHHHHHHhhhh-c-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc--ccceee
Confidence 4799999987644 3333333 2 689999999999999999999999 999999998664322 2221111 136899
Q ss_pred EEEEcCCc
Q 024097 198 FAFVDAEK 205 (272)
Q Consensus 198 lV~~d~~~ 205 (272)
+.+++.+.
T Consensus 180 ftmCNPPF 187 (299)
T PF05971_consen 180 FTMCNPPF 187 (299)
T ss_dssp EEEE----
T ss_pred EEecCCcc
Confidence 99998773
No 244
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.91 E-value=8.6e-05 Score=65.36 Aligned_cols=87 Identities=22% Similarity=0.162 Sum_probs=62.3
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++..++|.-.|.|+.+..+++.+++ ++++|+|.++++++.|++++. ...+++.++++++.+....+........+
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~--~~~~r~~~~~~~F~~l~~~l~~~~~~~~~ 94 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLK--KFDDRFIFIHGNFSNLDEYLKELNGINKV 94 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTC--CCCTTEEEEES-GGGHHHHHHHTTTTS-E
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHh--hccceEEEEeccHHHHHHHHHHccCCCcc
Confidence 456679999999999999999999985 999999999999999988774 34678999999998765555433134689
Q ss_pred EEEEEcCCcc
Q 024097 197 DFAFVDAEKR 206 (272)
Q Consensus 197 DlV~~d~~~~ 206 (272)
|.|++|...+
T Consensus 95 dgiL~DLGvS 104 (310)
T PF01795_consen 95 DGILFDLGVS 104 (310)
T ss_dssp EEEEEE-S--
T ss_pred CEEEEccccC
Confidence 9999987643
No 245
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=0.00026 Score=61.50 Aligned_cols=86 Identities=26% Similarity=0.258 Sum_probs=71.3
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
...++...+|.--|.|+.+..+++.+++.++++++|.++.+++.|++.+...+ +|++++++++.+....+...+ .++
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~~-i~~ 96 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKELG-IGK 96 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhcC-CCc
Confidence 34566799999999999999999999888899999999999999999886544 689999999877655543322 468
Q ss_pred eEEEEEcCC
Q 024097 196 YDFAFVDAE 204 (272)
Q Consensus 196 fDlV~~d~~ 204 (272)
+|-|+.|-.
T Consensus 97 vDGiL~DLG 105 (314)
T COG0275 97 VDGILLDLG 105 (314)
T ss_pred eeEEEEecc
Confidence 999998855
No 246
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.86 E-value=8.8e-05 Score=62.90 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
..| ...++..+-.......|-|+|||-+-++. . ...+|+++|+.+ . +-+++.+|...
T Consensus 165 ~nP-ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a--------------~--~~~V~~cDm~~ 221 (325)
T KOG3045|consen 165 ENP-LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA--------------V--NERVIACDMRN 221 (325)
T ss_pred CCh-HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeec--------------C--CCceeeccccC
Confidence 344 34566666555566789999999987654 2 235799999853 2 23556677765
Q ss_pred HHHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 183 SLKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 183 ~~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
. |- ++++.|+++.... ..+...++.++.++|++||.+.|..+.
T Consensus 222 v-Pl-----~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~ 266 (325)
T KOG3045|consen 222 V-PL-----EDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK 266 (325)
T ss_pred C-cC-----ccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence 2 21 2689999875433 456788999999999999999998764
No 247
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=6.7e-05 Score=59.19 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=70.4
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH-HHHHhCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL-KALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~ 193 (272)
....+++|||+|.| +|..++.+|...+ ...|..+|-+++.++-.++....+....--... +.... .....+.+.
T Consensus 26 n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~---vlrw~~~~aqsq~eq 101 (201)
T KOG3201|consen 26 NKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCC---VLRWLIWGAQSQQEQ 101 (201)
T ss_pred hHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceeh---hhHHHHhhhHHHHhh
Confidence 44567899999988 6778888888776 678999999999998888765443211101111 11111 111111124
Q ss_pred CceEEEEEcC-C--ccchHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDA-E--KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~-~--~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..||+|++.. . .+......+.+..+|+|.|.-++-
T Consensus 102 ~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~f 139 (201)
T KOG3201|consen 102 HTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLF 139 (201)
T ss_pred CcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEe
Confidence 6999998642 2 444566778888999999985553
No 248
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.83 E-value=0.0002 Score=54.97 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=68.8
Q ss_pred EEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH-HHHHHhCCCC-CceEEEE
Q 024097 123 CIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS-LKALILNGEA-SSYDFAF 200 (272)
Q Consensus 123 VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~-~~fDlV~ 200 (272)
++|+|||+|..+ .++...+....++++|+++.++..++..... .....+.+..++.... .+. .. ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF-----EDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC-----CCCCceeEEe
Confidence 999999999987 4444433224899999999999885544432 2111167777776542 221 12 3799994
Q ss_pred EcCCcc--chHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097 201 VDAEKR--MYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (272)
Q Consensus 201 ~d~~~~--~~~~~l~~~~~lLkpgG~lvi~d~~~~g 234 (272)
...... .....+..+.+.++|+|.+++.......
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 332211 1467889999999999999987766444
No 249
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.82 E-value=1.6e-05 Score=73.27 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=55.8
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHH-HhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE-RAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
..+||||||+|.++.+|.++ .|+++-..+.-...++..+. +.|+..-+.+. +..-++.. ++.||+|
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~---~s~rLPfp-----~~~fDmv 185 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERGVPAMIGVL---GSQRLPFP-----SNAFDMV 185 (506)
T ss_pred EEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcCcchhhhhh---ccccccCC-----ccchhhh
Confidence 57899999999999998874 34444333321111121121 13433211111 12223332 6899999
Q ss_pred EEcCC----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 200 FVDAE----KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 200 ~~d~~----~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
-+..- ...-.-++-++-|+|||||+++....-
T Consensus 186 Hcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 186 HCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred hcccccccchhcccceeehhhhhhccCceEEecCCc
Confidence 75432 222233677788999999999986443
No 250
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.79 E-value=0.0025 Score=53.88 Aligned_cols=97 Identities=20% Similarity=0.270 Sum_probs=62.4
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
.+++||=+|=+- ..+++++.... ..+|+.+|+++..++..++..++.|+. ++.++.|..+.+|.-. .++||+
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~----~~~fD~ 115 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEEL----RGKFDV 115 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTT----SS-BSE
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHH----hcCCCE
Confidence 579999999554 45555555433 479999999999999999999999986 9999999988766421 489999
Q ss_pred EEEcCC--ccchHHHHHHHHccCCCCc
Q 024097 199 AFVDAE--KRMYQEYFELLLQLIRVGG 223 (272)
Q Consensus 199 V~~d~~--~~~~~~~l~~~~~lLkpgG 223 (272)
+|.|.+ .....-|+......||.-|
T Consensus 116 f~TDPPyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 116 FFTDPPYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp EEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999987 4557778899988888766
No 251
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.77 E-value=8.7e-05 Score=60.44 Aligned_cols=108 Identities=15% Similarity=0.179 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHH
Q 024097 106 DQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLK 185 (272)
Q Consensus 106 ~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 185 (272)
..++++...-...++++|||+|+|+|..++..++.- ...|++.|+.|-.....+-|.+.++.. +.+...|... +
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g--~ 139 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG--S 139 (218)
T ss_pred HHHHHHhcCccccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC--C
Confidence 344444444455678999999999999999888763 358999999998888888888877764 7888777644 1
Q ss_pred HHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEE
Q 024097 186 ALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 186 ~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+..||+++.... +......+. +...|+..|..|+
T Consensus 140 -------~~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 140 -------PPAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred -------CcceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence 578999986432 333333444 4444555454444
No 252
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.75 E-value=0.00015 Score=59.31 Aligned_cols=105 Identities=16% Similarity=0.200 Sum_probs=75.2
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC------CCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV------SHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
-.+.|||||.|...+.++..+| +.-+.|+||-....++.++++....- -.++.+...++...++.+...|. -
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq-L 139 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ-L 139 (249)
T ss_pred ceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc-c
Confidence 4689999999999999999988 78899999999999999988887541 23578888888888877654331 1
Q ss_pred ceEEEEE-cCC----cc----chHHHHHHHHccCCCCcEEEE
Q 024097 195 SYDFAFV-DAE----KR----MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 195 ~fDlV~~-d~~----~~----~~~~~l~~~~~lLkpgG~lvi 227 (272)
+-++++. |.. ++ -...++.+..-+|++||.+..
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt 181 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT 181 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence 1122222 111 00 134567777789999998875
No 253
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.75 E-value=0.00034 Score=56.60 Aligned_cols=104 Identities=18% Similarity=0.222 Sum_probs=69.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHH--HHHHHhCCCCC
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADS--LKALILNGEAS 194 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--~~~~~~~~~~~ 194 (272)
.++.+|||+||..|.|+.-.-+...+.+.|.|||+-. + .... -++++.+ |..+. ...+.+.-..-
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~--~p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------I--EPPE-GATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------c--cCCC-CcccccccccCCHHHHHHHHHhCCCC
Confidence 4678999999999999999999987799999999853 1 1222 2556665 54442 12222222346
Q ss_pred ceEEEEEcCCc-------cchHHHHHHH-------HccCCCCcEEEEeCCCCCCc
Q 024097 195 SYDFAFVDAEK-------RMYQEYFELL-------LQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 195 ~fDlV~~d~~~-------~~~~~~l~~~-------~~lLkpgG~lvi~d~~~~g~ 235 (272)
+.|+|+.|..+ .+....++.| ...++|+|.+++- +|.|.
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g~ 188 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDGS 188 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecCC
Confidence 89999998541 1222333333 4778999999986 67774
No 254
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.72 E-value=0.00036 Score=60.04 Aligned_cols=164 Identities=14% Similarity=0.150 Sum_probs=84.3
Q ss_pred CChhHHHHHHhccCChHHHHHHHHHHHcCCCCCCCCCHHHHHHHH----HHHhhcCCCEEEEEcCc--cCHHHHHHHHHC
Q 024097 68 VTPPLYDYILRNVREPEILRQLREETAGMRGSQMQVSPDQAQLLA----MLVQILGAQRCIEVGVY--TGYSSLAIALVL 141 (272)
Q Consensus 68 ~~~~l~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~----~l~~~~~~~~VLEiG~G--~G~~~~~la~~~ 141 (272)
...++++|+..-....+.=+++-+...........+...--.|+. .++....-...|||||| |-..+..+++..
T Consensus 13 ~~ARvYDy~LGGkdnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~ 92 (267)
T PF04672_consen 13 SPARVYDYLLGGKDNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRV 92 (267)
T ss_dssp -HHHHHHHHCT-SS--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH
T ss_pred cHHHHHHHHhCCccCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhh
Confidence 345788888765443333233322221111000111122223333 33333356789999999 344677788877
Q ss_pred CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH---hCC--C-CCceEEEEEc-----CCccchHH
Q 024097 142 PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI---LNG--E-ASSYDFAFVD-----AEKRMYQE 210 (272)
Q Consensus 142 ~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~--~-~~~fDlV~~d-----~~~~~~~~ 210 (272)
.++++|+.+|.+|-.+..++..+....- .+..++++|..+...-+. ..+ + +.+.=++++. .+..+...
T Consensus 93 ~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~ 171 (267)
T PF04672_consen 93 APDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAG 171 (267)
T ss_dssp -TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHH
T ss_pred CCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHH
Confidence 7799999999999999999988854432 248999999987422220 000 1 1233333332 12345778
Q ss_pred HHHHHHccCCCCcEEEEeCCCC
Q 024097 211 YFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 211 ~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
.+..+...|.||.+|++.....
T Consensus 172 iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 172 IVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HHHHHHCCS-TT-EEEEEEEB-
T ss_pred HHHHHHHhCCCCceEEEEecCC
Confidence 8999999999999999987654
No 255
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.69 E-value=0.00042 Score=56.81 Aligned_cols=116 Identities=19% Similarity=0.174 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHH--hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 103 VSPDQAQLLAMLV--QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 103 ~~~~~~~~l~~l~--~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
-+...+.++.-+- ...++.+||=+|+.+|.....++.-.+ .+.++++|.++...+..-...+ -..++-.+.+|+
T Consensus 58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~---~R~Ni~PIL~DA 133 (231)
T COG1889 58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAE---KRPNIIPILEDA 133 (231)
T ss_pred hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHH---hCCCceeeeccc
Confidence 3444455555443 456789999999999999999999888 8899999999987654433332 234688888888
Q ss_pred hHHHH--HHHhCCCCCceEEEEEcCCccchHH-HHHHHHccCCCCcEEEE
Q 024097 181 ADSLK--ALILNGEASSYDFAFVDAEKRMYQE-YFELLLQLIRVGGIIVI 227 (272)
Q Consensus 181 ~~~~~--~~~~~~~~~~fDlV~~d~~~~~~~~-~l~~~~~lLkpgG~lvi 227 (272)
..-.. .+ -+..|+||.|-..++..+ +..++...|++||.+++
T Consensus 134 ~~P~~Y~~~-----Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i 178 (231)
T COG1889 134 RKPEKYRHL-----VEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI 178 (231)
T ss_pred CCcHHhhhh-----cccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence 64222 12 367999999988766555 45667889999996665
No 256
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00091 Score=56.29 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=71.4
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCCCCCc
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEASS 195 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~~~ 195 (272)
..+++.|||||+-||++|..+++.- ..+|+++|..-..+..- .....|+.... .|+....+... .+.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~k------LR~d~rV~~~E~tN~r~l~~~~~----~~~ 144 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWK------LRNDPRVIVLERTNVRYLTPEDF----TEK 144 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHh------HhcCCcEEEEecCChhhCCHHHc----ccC
Confidence 3478899999999999999999862 35899999987554321 12234555443 34443322211 347
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
.|++++|...-.....+..+..++++++.++.
T Consensus 145 ~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 145 PDLIVIDVSFISLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence 89999999888888889999999999988775
No 257
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.63 E-value=8.7e-05 Score=68.26 Aligned_cols=116 Identities=21% Similarity=0.227 Sum_probs=89.6
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CCCceEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EASSYDF 198 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~~~fDl 198 (272)
+..+|-+|-|.|.....+...++ ..++++++++|++++.|++++....- .+..++..|..+.+....+.. ++..||+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 45788889999999998888887 78999999999999999999854332 257788888888887776643 5678999
Q ss_pred EEEcCCccc------------hHHHHHHHHccCCCCcEEEEeCCCCCCccc
Q 024097 199 AFVDAEKRM------------YQEYFELLLQLIRVGGIIVIDNVLWHGKVA 237 (272)
Q Consensus 199 V~~d~~~~~------------~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~ 237 (272)
+++|.+..+ ...++..+...|.|.|.++++-+-.+..+.
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~ 424 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFK 424 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcchh
Confidence 998754111 244677778899999999998776665443
No 258
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00071 Score=60.36 Aligned_cols=104 Identities=15% Similarity=0.201 Sum_probs=84.6
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
+.+|+|-=+|+|.=++.++...+ ..+++.=|+||++++.+++|++.+... ....+..|+...+... ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~-----~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL-----HRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc-----CCCccEE
Confidence 78999999999999999998876 338999999999999999999987443 3566668887776653 4789988
Q ss_pred EEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 200 FVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
=+|. .....+|++.+.+.++.||++.+....
T Consensus 126 DiDP-FGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 126 DIDP-FGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred ecCC-CCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 7775 344567999999999999999986543
No 259
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.62 E-value=0.00017 Score=64.05 Aligned_cols=99 Identities=13% Similarity=0.059 Sum_probs=67.5
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.+++++|||||++|++|..+++. +++|++||..+-. ..+. -..+|+...+|.....+. .+.+|
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~------~~~vD 272 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPP------RKNVD 272 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCC------CCCCC
Confidence 47789999999999999999985 5699999966521 1221 234799999988775442 36899
Q ss_pred EEEEcCCccchHHHHHHHHccCCCC-cEEEEeCCCCCC
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVLWHG 234 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~~~~g 234 (272)
++++|.... .....+.+.+.|..| ..-.|-|+..++
T Consensus 273 wvVcDmve~-P~rva~lm~~Wl~~g~cr~aIfnLKlpm 309 (357)
T PRK11760 273 WLVCDMVEK-PARVAELMAQWLVNGWCREAIFNLKLPM 309 (357)
T ss_pred EEEEecccC-HHHHHHHHHHHHhcCcccEEEEEEEcCC
Confidence 999997632 334556666666665 123333455544
No 260
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.62 E-value=8.9e-05 Score=66.94 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=82.7
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++..++++|||.|....+++..- ..++++++.++..+..+.......++.++-.++.+|...... +++.|
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f------edn~f 179 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF------EDNTF 179 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC------Ccccc
Confidence 3456689999999999999998752 578999999999888888777777777666666666654322 36899
Q ss_pred EEEEE-cCC--ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 197 DFAFV-DAE--KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 197 DlV~~-d~~--~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
|.+.. +.. .+.....++++++.++|||+++.-+..
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99964 333 556778899999999999999986544
No 261
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.57 E-value=4.6e-05 Score=63.48 Aligned_cols=98 Identities=8% Similarity=0.047 Sum_probs=71.9
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
...++||||+.|+....+...- -.+++-+|.|-.|++.++..- ..++ .+....+|- +.++. .++++|+|
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DE-E~Ldf-----~ens~DLi 141 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDE-EFLDF-----KENSVDLI 141 (325)
T ss_pred CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CCce--EEEEEecch-hcccc-----cccchhhh
Confidence 4589999999999998877542 358999999999998887632 1122 244555554 33332 26899999
Q ss_pred EEc---CCccchHHHHHHHHccCCCCcEEEEe
Q 024097 200 FVD---AEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 200 ~~d---~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+.. ++..+.+..+..|...|||+|.++..
T Consensus 142 isSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 142 ISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred hhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 865 44666788899999999999988763
No 262
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.55 E-value=0.00059 Score=66.94 Aligned_cols=103 Identities=21% Similarity=0.231 Sum_probs=71.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHC-------CC----CcEEEEEeCChhHH--------------HHHHHHHHH-----hCC
Q 024097 120 AQRCIEVGVYTGYSSLAIALVL-------PE----SGCLVACERDARSL--------------EVAKKYYER-----AGV 169 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~-------~~----~~~v~~iD~s~~~~--------------~~a~~~~~~-----~~~ 169 (272)
.-+|+|+|-|+|+..+...+.+ ++ .-+++++|..|-.. +.+++..+. .|+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 3589999999999888777554 21 24899999865222 222222211 121
Q ss_pred ------CC--CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc------chHHHHHHHHccCCCCcEEEE
Q 024097 170 ------SH--KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 170 ------~~--~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~------~~~~~l~~~~~lLkpgG~lvi 227 (272)
.+ ++++..||+.+.++.+ ...+|++|.|+-.+ +..++|..+.++++|||+++-
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~-----~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQL-----DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhc-----cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 12 3557889999988876 45799999996422 357899999999999999984
No 263
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.48 E-value=0.0045 Score=58.45 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=97.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCC---CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEE
Q 024097 99 SQMQVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPE---SGCLVACERDARSLEVAKKYYERAGVSHKVKI 175 (272)
Q Consensus 99 ~~~~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~ 175 (272)
+..-......++|..++...+..+|.|-.||+|..-....+.+.. ...++|.|+++.....|+-++--.|....+..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 445567888899998888766779999999999988887777642 26799999999999999999887777544566
Q ss_pred EEcChhHHHHHHHhCCCCCceEEEEEcCCc----------------------------cchHHHHHHHHccCCCCc---E
Q 024097 176 KHGLAADSLKALILNGEASSYDFAFVDAEK----------------------------RMYQEYFELLLQLIRVGG---I 224 (272)
Q Consensus 176 ~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~----------------------------~~~~~~l~~~~~lLkpgG---~ 224 (272)
.++|........ .+.+.+.||+|+.+.+. .....+++++...|+||| +
T Consensus 246 ~~~dtl~~~~~~-~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aai 324 (489)
T COG0286 246 RHGDTLSNPKHD-DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAI 324 (489)
T ss_pred cccccccCCccc-ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEE
Confidence 666665432110 01124679998765331 012567889999999965 5
Q ss_pred EEEeCCCCCCc
Q 024097 225 IVIDNVLWHGK 235 (272)
Q Consensus 225 lvi~d~~~~g~ 235 (272)
++.+++++.|.
T Consensus 325 vl~~gvlfr~~ 335 (489)
T COG0286 325 VLPDGVLFRGG 335 (489)
T ss_pred EecCCcCcCCC
Confidence 66677777765
No 264
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.42 E-value=0.001 Score=57.64 Aligned_cols=107 Identities=16% Similarity=0.103 Sum_probs=72.0
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh-------------------------------
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA------------------------------- 167 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------------------------------- 167 (272)
...+||--|||.|..+..+|.. +..+.|.|.|--|+-..+-.+...
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 3468999999999999999986 579999999998865443322210
Q ss_pred --------CCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC---CccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 168 --------GVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 168 --------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~---~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
....++.+..||+.+....- ...++||.|+... ...+..++++.+.++|||||+.|=-..+
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~---~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPL 204 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPD---ENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPL 204 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCc---ccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCc
Confidence 01124555566665543210 0136899885331 2556788999999999999987754433
No 265
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.00071 Score=62.76 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=74.6
Q ss_pred CEEEEEcCccCHHHHHHHH---HCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 121 QRCIEVGVYTGYSSLAIAL---VLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~---~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
..|+-+|+|.|-......+ ...++.+++++|.+|.++...+. .+...+.++|+++.+|..++.+. .++.|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap------~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP------REQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc------hhhcc
Confidence 4567789999987665544 34456789999999999877654 44456778999999999886431 26789
Q ss_pred EEEEc-----CCccchHHHHHHHHccCCCCcEEEE
Q 024097 198 FAFVD-----AEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 198 lV~~d-----~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+++.. ++-+--++.+.-+.+.|||.|+.|-
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 88743 2344467889999999999987664
No 266
>PHA01634 hypothetical protein
Probab=97.31 E-value=0.00077 Score=51.12 Aligned_cols=75 Identities=20% Similarity=0.182 Sum_probs=55.7
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.++++|+|||++.|.++++++..- ..+|+++|.++...+..+++++....-++.... + ++.. +-++||
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~-~---eW~~------~Y~~~D 94 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMK-G---EWNG------EYEDVD 94 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeec-c---cccc------cCCCcc
Confidence 367899999999999999998752 358999999999999999988766543332222 1 1111 147899
Q ss_pred EEEEcCC
Q 024097 198 FAFVDAE 204 (272)
Q Consensus 198 lV~~d~~ 204 (272)
+..+|..
T Consensus 95 i~~iDCe 101 (156)
T PHA01634 95 IFVMDCE 101 (156)
T ss_pred eEEEEcc
Confidence 9999865
No 267
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.27 E-value=0.001 Score=56.51 Aligned_cols=89 Identities=11% Similarity=0.145 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhc-CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097 105 PDQAQLLAMLVQIL-GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (272)
Q Consensus 105 ~~~~~~l~~l~~~~-~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 183 (272)
+....+...+.... .+.+|+|||||.=-.++.+... +++..++|+|++..+++.....+...+.. .++...|....
T Consensus 90 ~~Ld~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~ 166 (251)
T PF07091_consen 90 PNLDEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSD 166 (251)
T ss_dssp GGHHHHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTS
T ss_pred hhHHHHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeecc
Confidence 34555666655543 4789999999998888876654 34689999999999999999999888875 56666666554
Q ss_pred HHHHHhCCCCCceEEEEEcC
Q 024097 184 LKALILNGEASSYDFAFVDA 203 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~ 203 (272)
.+ ....|+.++--
T Consensus 167 ~~-------~~~~DlaLllK 179 (251)
T PF07091_consen 167 PP-------KEPADLALLLK 179 (251)
T ss_dssp HT-------TSEESEEEEET
T ss_pred CC-------CCCcchhhHHH
Confidence 33 46789988643
No 268
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.21 E-value=0.00064 Score=55.40 Aligned_cols=113 Identities=9% Similarity=0.044 Sum_probs=66.6
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHH------HHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEV------AKKYYERAGVSHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~------a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 188 (272)
....++.+|+|+=.|.|++|.-++..+++.+.|+++-..+...-. .+...++.... +++.+-.+.....
T Consensus 44 aGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-N~e~~~~~~~A~~---- 118 (238)
T COG4798 44 AGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-NVEVIGKPLVALG---- 118 (238)
T ss_pred eccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhh-hhhhhCCcccccC----
Confidence 345678999999999999999999999888999988765431110 01111111111 2333322221111
Q ss_pred hCCCCCceEEEEEcC--------C--ccchHHHHHHHHccCCCCcEEEEeCC-CCCCc
Q 024097 189 LNGEASSYDFAFVDA--------E--KRMYQEYFELLLQLIRVGGIIVIDNV-LWHGK 235 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~--------~--~~~~~~~l~~~~~lLkpgG~lvi~d~-~~~g~ 235 (272)
..+..|+++... . .....++...+++.|||||++++.|- ...|.
T Consensus 119 ---~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~ 173 (238)
T COG4798 119 ---APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGS 173 (238)
T ss_pred ---CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCC
Confidence 134555555321 1 22345678888999999999887553 34443
No 269
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.19 E-value=0.00039 Score=64.01 Aligned_cols=115 Identities=23% Similarity=0.221 Sum_probs=93.1
Q ss_pred HHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097 112 AMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (272)
Q Consensus 112 ~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 191 (272)
.......++-+|||.=+++|.-++..++.++.-.+|++-|.++..++..++|++.++..+.++..++|+.-..-... .
T Consensus 102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~--~ 179 (525)
T KOG1253|consen 102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHP--M 179 (525)
T ss_pred chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcc--c
Confidence 33445567789999999999999999999986678999999999999999999999888889999999876543221 0
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
-...||+|=+|.- .....|++.+.+.++.||++.+.-
T Consensus 180 ~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 180 VAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEe
Confidence 1368999988754 334568999999999999999854
No 270
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.18 E-value=0.00047 Score=58.29 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=53.9
Q ss_pred HHHHHHhhcCC--CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh---CC-----CCCEEEEEcC
Q 024097 110 LLAMLVQILGA--QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA---GV-----SHKVKIKHGL 179 (272)
Q Consensus 110 ~l~~l~~~~~~--~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---~~-----~~~v~~~~~d 179 (272)
.+...+...++ .+|||.-+|-|.-++.++.. +++|+++|.||-.....+.-++++ .. ..|++++++|
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 34444444444 38999999999999998864 579999999998877666544432 11 1479999999
Q ss_pred hhHHHHHHHhCCCCCceEEEEEcCC
Q 024097 180 AADSLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 180 ~~~~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
+.+.+... .++||+|++|.-
T Consensus 141 ~~~~L~~~-----~~s~DVVY~DPM 160 (234)
T PF04445_consen 141 ALEYLRQP-----DNSFDVVYFDPM 160 (234)
T ss_dssp CCCHCCCH-----SS--SEEEE--S
T ss_pred HHHHHhhc-----CCCCCEEEECCC
Confidence 99887622 589999999864
No 271
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.16 E-value=0.0036 Score=55.06 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=72.1
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~ 193 (272)
....+.+||-+|+| .|..+...|++++ ..+|+.+|+++..++.|++ + |...-......+..+.+.+..++. ..
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~ 240 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGK 240 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhccc
Confidence 34577899999999 5888999999987 6799999999999999988 4 543211111222123333333332 23
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
..+|+.|-... ....++.....+|+||.+++-.
T Consensus 241 ~~~d~~~dCsG---~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 241 KQPDVTFDCSG---AEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred cCCCeEEEccC---chHHHHHHHHHhccCCEEEEec
Confidence 56999885443 2335667788899999977753
No 272
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.05 E-value=0.00028 Score=60.68 Aligned_cols=109 Identities=14% Similarity=0.177 Sum_probs=64.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC---------------------------C
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS---------------------------H 171 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~---------------------------~ 171 (272)
++.++||||||.-..- +..+.+.--+|+..|..+...+..++-+++.+.- .
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 5679999999974432 2222222247999999998887776665442110 1
Q ss_pred CEE-EEEcChhHHHHHHHhC-C-CCCceEEEEEcC-------CccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 172 KVK-IKHGLAADSLKALILN-G-EASSYDFAFVDA-------EKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 172 ~v~-~~~~d~~~~~~~~~~~-~-~~~~fDlV~~d~-------~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
.|+ ++.+|.....+ + .. . .+.+||.|++.. +...+...++++.++|||||.|++-.++
T Consensus 134 ~Vk~Vv~cDV~~~~p-l-~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNP-L-DPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp HEEEEEE--TTSSST-T-TTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhceEEEeeccCCCC-C-CccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 122 44455543211 0 00 0 123599998643 3556888899999999999999997766
No 273
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.98 E-value=0.0061 Score=54.46 Aligned_cols=98 Identities=22% Similarity=0.285 Sum_probs=69.5
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
...++++|+-+|+| .|..+..+|+++. ++|+++|.+++..+.|++. |-. .++...-.+..+.. .+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l----GAd---~~i~~~~~~~~~~~-----~~ 228 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL----GAD---HVINSSDSDALEAV-----KE 228 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh----CCc---EEEEcCCchhhHHh-----Hh
Confidence 45578899988877 5667888888875 8999999999998888773 332 33332222333333 23
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
.||+|+.-.. ...++...+.|++||.+++-.+.
T Consensus 229 ~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 229 IADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred hCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence 4999987655 34577888899999999986554
No 274
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.97 E-value=0.0019 Score=54.39 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=74.8
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
.+.++.+||=+|+++|.+...+...+.+.+-|+++|.++..-+.. +.-+.-..+|-.+..|+.---+.- ..-..
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL---~nmAkkRtNiiPIiEDArhP~KYR---mlVgm 226 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDL---INMAKKRTNIIPIIEDARHPAKYR---MLVGM 226 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHH---HHHhhccCCceeeeccCCCchhee---eeeee
Confidence 456889999999999999999999998899999999998543222 221222235666767775421110 01357
Q ss_pred eEEEEEcCCccchHHHH-HHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAEKRMYQEYF-ELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l-~~~~~lLkpgG~lvi~ 228 (272)
.|+||.|...++...++ -++...||+||-+++.
T Consensus 227 VDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 227 VDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred EEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence 89999998877655544 3456789999998874
No 275
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.0045 Score=51.83 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=64.9
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCC----Cc----EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH--HHHHHH
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPE----SG----CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD--SLKALI 188 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~----~~----~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~ 188 (272)
.-++|+|+.+..|.|+..+.+.+-. .+ ++++||+.+- +... .|.-+++|... .....+
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~-GV~qlq~DIT~~stae~Ii 108 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIE-GVIQLQGDITSASTAEAII 108 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccC-ceEEeecccCCHhHHHHHH
Confidence 3479999999999999999987621 21 3999999763 2333 36667777643 222222
Q ss_pred hCCCCCceEEEEEcCC-----ccchHHH---------HHHHHccCCCCcEEEEe
Q 024097 189 LNGEASSYDFAFVDAE-----KRMYQEY---------FELLLQLIRVGGIIVID 228 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~-----~~~~~~~---------l~~~~~lLkpgG~lvi~ 228 (272)
...+.++.|+|++|+. .++..+| |.-...+|+|||.+|.-
T Consensus 109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 2223468999999975 2333333 33335789999999864
No 276
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.00083 Score=59.44 Aligned_cols=108 Identities=23% Similarity=0.267 Sum_probs=67.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
..+++|||+|.|.|....++-..+|.-..++-+|.|+..-++.....+.... .+.....+|+....-.+ +....|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~l---p~ad~yt 187 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSL---PAADLYT 187 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCC---Cccceee
Confidence 4678999999999987777667777555788889888665554433322222 22233333333321111 1136788
Q ss_pred EEEEcCC------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097 198 FAFVDAE------KRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 198 lV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
++++... ......+++.++.++.|||.|||-+
T Consensus 188 l~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 188 LAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 8875322 2234458899999999999999854
No 277
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.89 E-value=0.0023 Score=58.27 Aligned_cols=59 Identities=20% Similarity=0.343 Sum_probs=51.4
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
.|||||+|||..++..+++-. -.||++|.-..|.+.|++...++|+.++|+++.-...+
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 689999999999998887643 47999999999999999999999999999988655443
No 278
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0056 Score=54.71 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=78.4
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCC---CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH-hC
Q 024097 115 VQILGAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI-LN 190 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~ 190 (272)
+...++.+|||+.+..|.-+..+.+.+- ..+.|++=|.++..+...+......... .+.+...++........ ..
T Consensus 151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccC
Confidence 4567889999999999999999988764 2358999999999888877776544432 34444444432211110 11
Q ss_pred C--CCCceEEEEEcCCc--------------c------------chHHHHHHHHccCCCCcEEEEeCCC
Q 024097 191 G--EASSYDFAFVDAEK--------------R------------MYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 191 ~--~~~~fDlV~~d~~~--------------~------------~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
+ +...||-|++|.+. . -...++....++||+||.+|...+.
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 1 23689999998541 0 0234566778999999999987654
No 279
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.79 E-value=0.017 Score=52.18 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=71.5
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCCCc
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS 195 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~ 195 (272)
.++.+|+-+||| .|..+..+++..+ ..+|+.+|.+++.++.|++... .+.+..... +........ .....
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g----~~~~~~~~~~~~~~~~~~~---t~g~g 238 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGG----ADVVVNPSEDDAGAEILEL---TGGRG 238 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCC----CeEeecCccccHHHHHHHH---hCCCC
Confidence 344589999999 4888888888876 6799999999999999987542 111111111 222222122 11236
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g 234 (272)
+|++|-... ....++.+.++++|||.+++-.+.-..
T Consensus 239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 999996655 445788899999999999986655333
No 280
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=96.54 E-value=0.0039 Score=53.81 Aligned_cols=106 Identities=21% Similarity=0.165 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
..=|.+.+++.... .+..++|+|||.|-.+. ..+...++++|++...+..+++ .+ ......+|++
T Consensus 31 ~~Wp~v~qfl~~~~---~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~----~~---~~~~~~ad~l 95 (293)
T KOG1331|consen 31 APWPMVRQFLDSQP---TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKR----SG---GDNVCRADAL 95 (293)
T ss_pred CccHHHHHHHhccC---CcceeeecccCCcccCc-----CCCcceeeecchhhhhcccccc----CC---Cceeehhhhh
Confidence 33466666666543 36789999999995432 1135689999999887776654 22 1245666666
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCc------cchHHHHHHHHccCCCCcEEEEe
Q 024097 182 DSLKALILNGEASSYDFAFVDAEK------RMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~------~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..... +.+||.++..+.. ......++++.+.|+|||...+-
T Consensus 96 ~~p~~------~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 96 KLPFR------EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred cCCCC------CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 54322 5789998765442 23456799999999999987763
No 281
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.013 Score=45.72 Aligned_cols=114 Identities=13% Similarity=0.064 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (272)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 184 (272)
.++.+-...++...+..+.+|+|+|.|...+..++.. --.-+|+|++|-.+.+++-..-+.|...+.+|..-|....
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~- 134 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV- 134 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc-
Confidence 3344444445555666789999999999999888763 1357999999999999988777888888888886666442
Q ss_pred HHHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 185 KALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 185 ~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+ -..|..|++-+........-.++..-+..|..++..
T Consensus 135 -d------l~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vvac 171 (199)
T KOG4058|consen 135 -D------LRDYRNVVIFGAESVMPDLEDKLRTELPANTRVVAC 171 (199)
T ss_pred -c------ccccceEEEeehHHHHhhhHHHHHhhCcCCCeEEEE
Confidence 1 245555655555444444455566677788887764
No 282
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=96.51 E-value=0.0052 Score=54.39 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHH-------HHHHHHHHhCCCC-CE
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE-------VAKKYYERAGVSH-KV 173 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~-------~a~~~~~~~~~~~-~v 173 (272)
.+.++..-+++.++...+++.|.|--.|||......|.- ++.|+|.||+-.++. -.+.|++..|..+ -+
T Consensus 191 SmDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fl 267 (421)
T KOG2671|consen 191 SMDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFL 267 (421)
T ss_pred ccchhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhh
Confidence 456777777777888889999999999999888777653 589999999987776 3567888888654 35
Q ss_pred EEEEcChhHHHHHHHhCCCCCceEEEEEcCCc------------------------------c------chHHHHHHHHc
Q 024097 174 KIKHGLAADSLKALILNGEASSYDFAFVDAEK------------------------------R------MYQEYFELLLQ 217 (272)
Q Consensus 174 ~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~------------------------------~------~~~~~l~~~~~ 217 (272)
.+..+|..... +.. ...||.|++|.+- . .+-..+.-..+
T Consensus 268 dvl~~D~sn~~--~rs---n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~ 342 (421)
T KOG2671|consen 268 DVLTADFSNPP--LRS---NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSR 342 (421)
T ss_pred heeeecccCcc--hhh---cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHh
Confidence 67777775421 111 4689999998640 0 01234555568
Q ss_pred cCCCCcEEEE
Q 024097 218 LIRVGGIIVI 227 (272)
Q Consensus 218 lLkpgG~lvi 227 (272)
.|..||.+++
T Consensus 343 ~L~~ggrlv~ 352 (421)
T KOG2671|consen 343 RLVDGGRLVF 352 (421)
T ss_pred hhhcCceEEE
Confidence 9999999986
No 283
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.11 Score=44.29 Aligned_cols=112 Identities=17% Similarity=0.134 Sum_probs=78.1
Q ss_pred HHhhcCCCEEEEEcCccCHHHHHHHHHCCCC---cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097 114 LVQILGAQRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 114 l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 190 (272)
++....+...+|+|+|+-.-+..+...+.+. .+++.+|++...++...+.+...-..-.+.-+.+|....+..+..
T Consensus 73 ia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~- 151 (321)
T COG4301 73 IASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPR- 151 (321)
T ss_pred HHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccC-
Confidence 4455678899999999999999988887532 589999999998876554444332222366677777666655531
Q ss_pred CCCCceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEe
Q 024097 191 GEASSYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 191 ~~~~~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+.==++|+... ......|+..+...|+||-++++-
T Consensus 152 --~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 152 --GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred --CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEe
Confidence 123334454432 445677999999999999998874
No 284
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.31 E-value=0.01 Score=45.12 Aligned_cols=92 Identities=21% Similarity=0.309 Sum_probs=61.9
Q ss_pred ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccch
Q 024097 129 YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMY 208 (272)
Q Consensus 129 G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~ 208 (272)
|.|..+..+++..+ .+|+++|.++...+.+++ .|...-+.....|..+.+..+ .....+|+||-... .
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~----~Ga~~~~~~~~~~~~~~i~~~---~~~~~~d~vid~~g---~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKE----LGADHVIDYSDDDFVEQIREL---TGGRGVDVVIDCVG---S 68 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHH----TTESEEEETTTSSHHHHHHHH---TTTSSEEEEEESSS---S
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHh----hcccccccccccccccccccc---cccccceEEEEecC---c
Confidence 46889999999876 899999999998877765 453211111122233333333 11257999986554 2
Q ss_pred HHHHHHHHccCCCCcEEEEeCCCC
Q 024097 209 QEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 209 ~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
...++....+|++||.+++-...-
T Consensus 69 ~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred HHHHHHHHHHhccCCEEEEEEccC
Confidence 457888999999999999875554
No 285
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.29 E-value=0.00063 Score=55.96 Aligned_cols=94 Identities=15% Similarity=0.104 Sum_probs=63.4
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
.+.++||+|+|.|-.+..++-.+. +|+++|.|..|....++ .+. .+. ...+.... +-+||+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~k----k~y----nVl--~~~ew~~t------~~k~dl 172 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKK----KNY----NVL--TEIEWLQT------DVKLDL 172 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhh----cCC----cee--eehhhhhc------Cceeeh
Confidence 457999999999999998887654 68999999888765433 232 111 12233221 347898
Q ss_pred EEEcCC---ccchHHHHHHHHccCCC-CcEEEEeCCC
Q 024097 199 AFVDAE---KRMYQEYFELLLQLIRV-GGIIVIDNVL 231 (272)
Q Consensus 199 V~~d~~---~~~~~~~l~~~~~lLkp-gG~lvi~d~~ 231 (272)
|.+-.. .-+....++.++.+|+| +|.+|+.-++
T Consensus 173 i~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL 209 (288)
T KOG3987|consen 173 ILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL 209 (288)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence 875332 22355678899999998 8888876544
No 286
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.29 E-value=0.0027 Score=55.10 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=71.0
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
.+..|+|+-+|-||+++.+.-..+ ...|+++|.+|..++..+++++.++..++..++.||-...-+ ....|-
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~-------~~~Adr 265 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP-------RLRADR 265 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc-------cccchh
Confidence 447899999999999995544333 468999999999999999999988887777777777654322 356777
Q ss_pred EEEcCCccchHHHHHHHHccCCC-Cc-EEEEeCCC
Q 024097 199 AFVDAEKRMYQEYFELLLQLIRV-GG-IIVIDNVL 231 (272)
Q Consensus 199 V~~d~~~~~~~~~l~~~~~lLkp-gG-~lvi~d~~ 231 (272)
|.+..-+..-.. +-.+.+.||| || ++-|+...
T Consensus 266 VnLGLlPSse~~-W~~A~k~Lk~eggsilHIHenV 299 (351)
T KOG1227|consen 266 VNLGLLPSSEQG-WPTAIKALKPEGGSILHIHENV 299 (351)
T ss_pred eeeccccccccc-hHHHHHHhhhcCCcEEEEeccc
Confidence 776543322222 2233445554 55 66666543
No 287
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.18 E-value=0.084 Score=48.22 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=68.7
Q ss_pred HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC-hhHHHHHHHhCC
Q 024097 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNG 191 (272)
Q Consensus 114 l~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~ 191 (272)
.....++.+||.+|+|. |..+..+++..+ ..++++++.+++..+.+++.. +. ..+.....+ ..+.+..+ .
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~---~ 250 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALREL---T 250 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHH---c
Confidence 34455678999999987 888888998865 346999999999888877642 21 112222221 22222222 1
Q ss_pred CCCceEEEEEcCCc------------------cchHHHHHHHHccCCCCcEEEEeC
Q 024097 192 EASSYDFAFVDAEK------------------RMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 192 ~~~~fDlV~~d~~~------------------~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
....+|+||-.... .+....++.+.+.|+++|.++.-.
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 12468988753221 112456788899999999998754
No 288
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.16 E-value=0.072 Score=44.35 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=64.5
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHH-------------------------------
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYER------------------------------- 166 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~------------------------------- 166 (272)
.+-++-|-.||.|+..--+.-..++ -..|++-|+++++++.|++|+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 5568999999999987766655432 24799999999999999988652
Q ss_pred ----------hCCCCCEEEEEcChhHHHH--HHHhCCCCCceEEEEEcCC-------c-----cchHHHHHHHHccCCCC
Q 024097 167 ----------AGVSHKVKIKHGLAADSLK--ALILNGEASSYDFAFVDAE-------K-----RMYQEYFELLLQLIRVG 222 (272)
Q Consensus 167 ----------~~~~~~v~~~~~d~~~~~~--~~~~~~~~~~fDlV~~d~~-------~-----~~~~~~l~~~~~lLkpg 222 (272)
.|-.....+...|..+.-. .. .. ....|+|+.|-+ . .....+++.+...|.++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~-~~--~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~ 207 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVL-DA--GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPER 207 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHH-HT--T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhh-cc--CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCC
Confidence 1112235677777665321 11 11 234699998854 1 12567899999999777
Q ss_pred cEEEEeC
Q 024097 223 GIIVIDN 229 (272)
Q Consensus 223 G~lvi~d 229 (272)
+++++.|
T Consensus 208 sVV~v~~ 214 (246)
T PF11599_consen 208 SVVAVSD 214 (246)
T ss_dssp -EEEEEE
T ss_pred cEEEEec
Confidence 8888743
No 289
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.02 E-value=0.016 Score=48.35 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=60.9
Q ss_pred CCCHHHHHHHHHHHhhcC----CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE
Q 024097 102 QVSPDQAQLLAMLVQILG----AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH 177 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~----~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~ 177 (272)
..+....+++........ ..++|||||-+......-.. --.|+.||+++.. -.+.+
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~q 89 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQ 89 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCcee
Confidence 345555555555443322 25999999976654433221 2369999998631 23455
Q ss_pred cChhHHHHHHHhCCCCCceEEEEEcC------CccchHHHHHHHHccCCCCcE
Q 024097 178 GLAADSLKALILNGEASSYDFAFVDA------EKRMYQEYFELLLQLIRVGGI 224 (272)
Q Consensus 178 ~d~~~~~~~~~~~~~~~~fDlV~~d~------~~~~~~~~l~~~~~lLkpgG~ 224 (272)
.|+.+.. ....+.+.||+|.+.- .....-+.+..+.+.|+|+|.
T Consensus 90 qDFm~rp---lp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 90 QDFMERP---LPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eccccCC---CCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 5555531 1111357999997542 233455688999999999999
No 290
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.00 E-value=0.049 Score=48.82 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=60.8
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
.++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++ .|...-+.....+.. ..... .+.+
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~----~~~~~--~g~~ 236 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLD----HYKAE--KGYF 236 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHH----HHhcc--CCCC
Confidence 357889988875 4556666777654 2379999999988887765 343211111111221 11111 2458
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
|+||-.... ...++.+.+.|++||.++.-..
T Consensus 237 D~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSGH---PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCCC---HHHHHHHHHHhhcCCEEEEEcc
Confidence 988854432 2356778889999999997653
No 291
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.76 E-value=0.028 Score=41.94 Aligned_cols=89 Identities=22% Similarity=0.228 Sum_probs=58.9
Q ss_pred CccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCceEEEEEcCC
Q 024097 128 VYTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 128 ~G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~fDlV~~d~~ 204 (272)
||.|..+..+++.+...+ +|+.+|.+++.++.+++ .+ +.++.||+.+. +... +-...|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~----~~~i~gd~~~~~~l~~a----~i~~a~~vv~~~~ 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG----VEVIYGDATDPEVLERA----GIEKADAVVILTD 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT----SEEEES-TTSHHHHHHT----TGGCESEEEEESS
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc----cccccccchhhhHHhhc----CccccCEEEEccC
Confidence 566889999888875556 89999999998776654 23 67899999763 2322 2367888888765
Q ss_pred ccchHHHHHHHHccCCCCcEEEEe
Q 024097 205 KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 205 ~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.....-..-...+.+.|...+++.
T Consensus 72 ~d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 72 DDEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp SHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHHHHHHCCCCeEEEE
Confidence 443333344445666777777753
No 292
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.75 E-value=0.13 Score=48.79 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=68.4
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc---------------Chh
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---------------LAA 181 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---------------d~~ 181 (272)
.++.+|+-+|+| .|..++..++.++ ++|+++|.+++..+.+++ .|.. .+.+-.. +..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~-~v~i~~~e~~~~~~gya~~~s~~~~ 235 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE-FLELDFEEEGGSGDGYAKVMSEEFI 235 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe-EEEeccccccccccchhhhcchhHH
Confidence 468899999999 5778888888875 589999999998887766 3422 0111100 111
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCccc--hHHH-HHHHHccCCCCcEEEEeCCCCCC
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKRM--YQEY-FELLLQLIRVGGIIVIDNVLWHG 234 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~~--~~~~-l~~~~~lLkpgG~lvi~d~~~~g 234 (272)
+........ ....+|+||.....+. .+.. .+...+.+||||+++.-.+...|
T Consensus 236 ~~~~~~~~~-~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG 290 (509)
T PRK09424 236 KAEMALFAE-QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGG 290 (509)
T ss_pred HHHHHHHHh-ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCC
Confidence 100111010 0146899997655322 2334 58999999999998875554344
No 293
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.74 E-value=0.053 Score=46.41 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=60.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHH-----HHHhCCCCCEEEEEcC---hhHHHHHHHhC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY-----YERAGVSHKVKIKHGL---AADSLKALILN 190 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~-----~~~~~~~~~v~~~~~d---~~~~~~~~~~~ 190 (272)
...+|||+|+|+|..++.++... .++|+..|...- +...+.+ .+...+...+.+..-+ ..+....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~---- 158 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR---- 158 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence 56789999999998888888764 478888888543 3333222 2222222234443332 2222111
Q ss_pred CCCCc-eEEEEEcCC---ccchHHHHHHHHccCCCCcEEEEe
Q 024097 191 GEASS-YDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 191 ~~~~~-fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
... ||+|+.... .+........+..+|..+|++.+.
T Consensus 159 --~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 159 --LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred --cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 133 899885432 444566677777888888855553
No 294
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=95.65 E-value=0.092 Score=47.12 Aligned_cols=94 Identities=18% Similarity=0.097 Sum_probs=58.2
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
.++.+||-+|+| .|..+..+++......+|+++|.+++..+.+++ .+. . .. ..+. .. ...+
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~---~-~~---~~~~-~~------~~g~ 223 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE---T-YL---IDDI-PE------DLAV 223 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc---e-ee---hhhh-hh------ccCC
Confidence 467899999975 243445556643214689999999988777654 221 1 11 1111 11 1258
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
|+||-..........++...++|++||.+++-.
T Consensus 224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred cEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence 988743332223456888899999999998754
No 295
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=95.63 E-value=0.05 Score=47.48 Aligned_cols=95 Identities=16% Similarity=0.094 Sum_probs=62.5
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~ 201 (272)
+|+|+.||.|..+..+.+. + -..+.++|+++.+++..+.|+.. .++.+|..+....-. ...+|+++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di~~~~~~~~----~~~~D~l~~ 68 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPN-------KLIEGDITKIDEKDF----IPDIDLLTG 68 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCC-------CCccCccccCchhhc----CCCCCEEEe
Confidence 6999999999998888764 2 23579999999999888777632 155666665433210 256999987
Q ss_pred cCCc------------cc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 024097 202 DAEK------------RM-----YQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 202 d~~~------------~~-----~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
..+. .+ ...++ .+.+.++|. ++++.|+.
T Consensus 69 gpPCq~fS~ag~~~~~~d~r~~L~~~~~-~~i~~~~P~-~~v~ENV~ 113 (275)
T cd00315 69 GFPCQPFSIAGKRKGFEDTRGTLFFEII-RILKEKKPK-YFLLENVK 113 (275)
T ss_pred CCCChhhhHHhhcCCCCCchHHHHHHHH-HHHHhcCCC-EEEEEcCc
Confidence 6531 11 11222 334556774 78888885
No 296
>PRK13699 putative methylase; Provisional
Probab=95.61 E-value=0.022 Score=48.31 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=39.9
Q ss_pred EEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc------------------chHHHHHHHHccCCCCcEEEE
Q 024097 173 VKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------------------MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 173 v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~------------------~~~~~l~~~~~lLkpgG~lvi 227 (272)
.++++||+.+.+..+. ++++|+||.|.+-. ....++.++.++|||||.+++
T Consensus 2 ~~l~~gD~le~l~~lp----d~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 2 SRFILGNCIDVMARFP----DNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred CeEEechHHHHHHhCC----ccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3688999999887763 58999999996521 124567888999999998876
No 297
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.55 E-value=0.021 Score=43.70 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=39.7
Q ss_pred CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCC------ccchHHHHHHHHccCCCCcEEEEe
Q 024097 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAE------KRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 172 ~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
++++..||+.+.++.+ ...||+||.|+- .-...++++.+.++++|||++..-
T Consensus 32 ~L~L~~gDa~~~l~~l-----~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~Ty 89 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQL-----DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLATY 89 (124)
T ss_dssp EEEEEES-HHHHHHHB------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEES
T ss_pred EEEEEEcHHHHHHHhC-----cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEEe
Confidence 4678899999998887 579999999964 223578999999999999999864
No 298
>PRK11524 putative methyltransferase; Provisional
Probab=95.49 E-value=0.053 Score=47.57 Aligned_cols=56 Identities=5% Similarity=-0.006 Sum_probs=44.6
Q ss_pred HHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH
Q 024097 108 AQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER 166 (272)
Q Consensus 108 ~~~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~ 166 (272)
.+++..++.. .++..|||--+|+|..+++..+ + +-+.+|+|++++.++.|++++..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~-l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKA-S--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHH-c--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 4566666654 4788999999999987776555 3 34899999999999999999853
No 299
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.31 E-value=0.057 Score=44.98 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHH
Q 024097 105 PDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162 (272)
Q Consensus 105 ~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~ 162 (272)
+.-.+++..++.. .++..|||.-||+|..+.+..+ ++ -+.+|+|++++.++.|++
T Consensus 175 ~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~-l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEE-LG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHH-TT---EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHH-cC--CeEEEEeCCHHHHHHhcC
Confidence 3344555555543 4678999999999987776665 33 489999999999999875
No 300
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=95.30 E-value=0.51 Score=40.86 Aligned_cols=109 Identities=11% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--CCCEEEEEcChhHH-HHHHHhCC-CCCc
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAADS-LKALILNG-EASS 195 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~-~~~~~~~~-~~~~ 195 (272)
...|+.+|||.=.-...+. .+.+.+++=+|. |+.++.-++.+...+. ..+.+++..|..+. ...+...+ +.+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLP--WPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcC--CCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 4579999997654444332 232344544444 5566666677765443 45788999988642 23333322 2233
Q ss_pred eEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 196 YDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 196 fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
.-++++.+. ......+++.+.+...||+.|+++-+.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~ 199 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR 199 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 345554443 445667888888888899999998543
No 301
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.17 E-value=0.18 Score=45.45 Aligned_cols=104 Identities=19% Similarity=0.262 Sum_probs=61.7
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
...++.+||-.|+| .|..+..+++..+ ..+|+++|.+++..+.+++ .|...-+.....+..+.+.... ...
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~---~~~ 244 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT---GGF 244 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh---CCC
Confidence 34567899988875 3555566777653 2259999999988777754 3432112222223323222221 124
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
.+|+||-.... ...++.+.+.+++||.+++-..
T Consensus 245 g~d~vid~~g~---~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 245 GADVVIDAVGR---PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCCEEEECCCC---HHHHHHHHHHhccCCEEEEECC
Confidence 58988743322 2346677889999999987544
No 302
>PRK11524 putative methyltransferase; Provisional
Probab=95.12 E-value=0.042 Score=48.17 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=40.6
Q ss_pred CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc------c-------------hHHHHHHHHccCCCCcEEEEe
Q 024097 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR------M-------------YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 172 ~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~------~-------------~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+++++|+.+.+..+. +++||+||+|.+.. . ...++..+.++|||||.|++.
T Consensus 8 ~~~i~~gD~~~~l~~l~----~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIP----SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcc----cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45789999999776552 57999999997621 0 135778889999999999874
No 303
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.04 E-value=0.012 Score=54.62 Aligned_cols=98 Identities=11% Similarity=0.081 Sum_probs=58.6
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
.-++|+|..+|.|+++.+|.+. .|..+...|..-.-.-..+-..|+-. +..|..+.++.. +.+||+
T Consensus 365 ~iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGLIG----~yhDWCE~fsTY-----PRTYDL 430 (506)
T PF03141_consen 365 RIRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGLIG----VYHDWCEAFSTY-----PRTYDL 430 (506)
T ss_pred ceeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhcccch----hccchhhccCCC-----Ccchhh
Confidence 4468999999999999888753 24444444321100111111123321 223444433332 578999
Q ss_pred EEEcCC------ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 199 AFVDAE------KRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 199 V~~d~~------~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
|-.++. .-.....+-++-|+|||||.++|.|-
T Consensus 431 lHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~ 468 (506)
T PF03141_consen 431 LHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT 468 (506)
T ss_pred eehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc
Confidence 977654 23356677788899999999999643
No 304
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.01 E-value=0.27 Score=43.44 Aligned_cols=99 Identities=21% Similarity=0.293 Sum_probs=61.5
Q ss_pred hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
..++.+||..|+| .|..+..+++.. +.+|++++.+++..+.+++ .+....+.....+..+.+ ... ....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~---~~~~ 232 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG---LGGG 232 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh---cCCC
Confidence 4566788888876 477777788775 4689999999987776644 344221111111121222 111 2357
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|+|+..... ...++.+.+.|+++|.++.-
T Consensus 233 ~D~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 233 FDVIFDFVGT---QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred ceEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 9988743322 34677888999999999864
No 305
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.96 E-value=0.18 Score=45.71 Aligned_cols=102 Identities=24% Similarity=0.304 Sum_probs=60.9
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
...++.+||-+|+| .|..+..+++..+ . +|+++|.+++..+.+++ .|...-+.....+..+.+.... .
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G--~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~----~ 257 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAG--ASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT----G 257 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh----C
Confidence 34567888888875 3445566676653 4 69999999988877754 3442111111122222222221 2
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
+.+|+||-.... ...++.+.+.|++||.++.-..
T Consensus 258 ~g~d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 258 GGVDYAFEMAGS---VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred CCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEEcc
Confidence 368988853322 2357777889999999987543
No 306
>PRK13699 putative methylase; Provisional
Probab=94.77 E-value=0.12 Score=43.72 Aligned_cols=56 Identities=9% Similarity=0.000 Sum_probs=43.3
Q ss_pred HHHHHHHh--hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh
Q 024097 109 QLLAMLVQ--ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA 167 (272)
Q Consensus 109 ~~l~~l~~--~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~ 167 (272)
+++..++. ..++..|||--||+|..+.+..+. +-+++|+|++++..+.+.++++..
T Consensus 151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence 44444443 347789999999999887776653 358999999999999999988653
No 307
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=94.71 E-value=0.25 Score=44.35 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=61.2
Q ss_pred hhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
...++.+||-+|+|. |..+..+++..+ .+|++++.+++..+.+++ .|...-+.....+..+............
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~t~~~ 236 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAFAKAR 236 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhhcccC
Confidence 345678999999864 666677777754 589999999988877754 3432212211111112222221111112
Q ss_pred ceE----EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 195 SYD----FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 195 ~fD----lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
.+| +|| +..- ....++.+.++|++||.+++-...
T Consensus 237 g~d~~~d~v~-d~~g--~~~~~~~~~~~l~~~G~iv~~G~~ 274 (349)
T TIGR03201 237 GLRSTGWKIF-ECSG--SKPGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CCCCCcCEEE-ECCC--ChHHHHHHHHHHhcCCeEEEECcC
Confidence 354 454 3321 123566778889999999876544
No 308
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.67 E-value=0.51 Score=42.47 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=64.2
Q ss_pred HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCC
Q 024097 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG 191 (272)
Q Consensus 115 ~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~ 191 (272)
....++.+||=.|+ |.|..+..+++.. +.+|++++.+++..+.+++. .|...-+..... +..+.+... .
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---~ 225 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRY---F 225 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHH---C
Confidence 34557789999987 3677888888876 46899999988876665432 354321221111 232323222 1
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
.+.+|+||-.... ..+..+.+.|++||.+++-.
T Consensus 226 -~~gvD~v~d~vG~----~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 226 -PEGIDIYFDNVGG----DMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred -CCCcEEEEECCCH----HHHHHHHHHhccCCEEEEEC
Confidence 2468988843321 35778889999999998654
No 309
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.50 E-value=0.45 Score=41.97 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=70.3
Q ss_pred CCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 120 ~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
+.+|.-||.| .|..+..+|-.+ ++.|+-+|+|.+.++.....+ ..|++....+...+.... .+.|+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v------~~aDl 234 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV------KKADL 234 (371)
T ss_pred CccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh------hhccE
Confidence 4567778877 577787788765 489999999998887766654 247888887776655544 57898
Q ss_pred EEEc---CCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 199 AFVD---AEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 199 V~~d---~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
|+-. .......-..++..+.+|||++|+=-.+...|.
T Consensus 235 vIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc 274 (371)
T COG0686 235 VIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGC 274 (371)
T ss_pred EEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCc
Confidence 8732 222333345777888999999876433444443
No 310
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.45 E-value=0.27 Score=46.58 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=59.9
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE---------------cChh
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH---------------GLAA 181 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~---------------~d~~ 181 (272)
.++.+|+-+|+| .|..+..+++.++ +.|+.+|.+++..+.+++ .|.. .+++-. .+..
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHH
Confidence 356899999998 4667777777764 679999999997776654 2321 111111 0111
Q ss_pred HHHHHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCCCCcEEEE
Q 024097 182 DSLKALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+....+..+ .-..+|+||.... .+...-..++..+.+|||++++-
T Consensus 235 ~~~~~~~~e-~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAA-QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHH-HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 101111110 0256999986552 22222256777899999998763
No 311
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.22 Score=44.81 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=39.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHCC-------CCcEEEEEeCChhHHHHHHHHHHHh
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLP-------ESGCLVACERDARSLEVAKKYYERA 167 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~-------~~~~v~~iD~s~~~~~~a~~~~~~~ 167 (272)
+-.++|||.|+|..+.-+++.+. ...++.-||+|++..+.-++.++..
T Consensus 78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 45899999999999988877652 2468999999999998888887654
No 312
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.40 E-value=0.21 Score=42.12 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=56.5
Q ss_pred CCEEEEEcCccCHHHHHHH-HHCCCCcEEEEEeCChhHHHHHHHHHHHh-CCCCCEEEEEcC-hhHHHHHHHhCCCCCce
Q 024097 120 AQRCIEVGVYTGYSSLAIA-LVLPESGCLVACERDARSLEVAKKYYERA-GVSHKVKIKHGL-AADSLKALILNGEASSY 196 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la-~~~~~~~~v~~iD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d-~~~~~~~~~~~~~~~~f 196 (272)
.-++||||+|. ..++=. -...-+.+++|.|+++..++.|+.++..+ ++...++++... ...+++.... -.+.|
T Consensus 79 ~i~~LDIGvGA--nCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig--~nE~y 154 (292)
T COG3129 79 NIRILDIGVGA--NCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG--KNERY 154 (292)
T ss_pred ceEEEeeccCc--ccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc--cccee
Confidence 34789998864 333321 11122568999999999999999998876 676677776443 2223332211 14789
Q ss_pred EEEEEcCCccchHH
Q 024097 197 DFAFVDAEKRMYQE 210 (272)
Q Consensus 197 DlV~~d~~~~~~~~ 210 (272)
|++.++.+.....+
T Consensus 155 d~tlCNPPFh~s~~ 168 (292)
T COG3129 155 DATLCNPPFHDSAA 168 (292)
T ss_pred eeEecCCCcchhHH
Confidence 99999988555433
No 313
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.31 E-value=0.39 Score=42.72 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=58.9
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
...++.+||=+|+| .|..+..+++..+ .+ |++++.+++..+.+++ .|...-+.....+ .+.+.... ..
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G--~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~---~~ 229 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALG--AEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT---SG 229 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh---CC
Confidence 44567899988864 3445555666654 55 9999999887776644 3442111111112 12222221 12
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
..+|+||-.... ...+....+.|+++|.+++-.
T Consensus 230 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 262 (339)
T cd08239 230 AGADVAIECSGN---TAARRLALEAVRPWGRLVLVG 262 (339)
T ss_pred CCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEEc
Confidence 469988854332 234566778899999998643
No 314
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=94.29 E-value=0.17 Score=45.66 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHH
Q 024097 107 QAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKK 162 (272)
Q Consensus 107 ~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~ 162 (272)
..+++..+....+-..|+|+|.|.|+.+..++-.. +-.|.+||-|....+.|++
T Consensus 141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 34555556666677899999999999999998765 5799999999777766654
No 315
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.18 E-value=0.61 Score=39.45 Aligned_cols=98 Identities=22% Similarity=0.313 Sum_probs=60.6
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
.++.+||-.|+|. |..+..+++.. +.+|++++.+++..+.+++ .+...-+.....+..+.+. . ...+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~-~---~~~~~~ 202 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKE----LGADHVIDYKEEDLEEELR-L---TGGGGA 202 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceeccCCcCCHHHHHH-H---hcCCCC
Confidence 5678999999885 66666777765 4789999999877666543 2322111111111212111 1 113679
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|+++...... ..++.+.+.|+++|.++.-
T Consensus 203 d~vi~~~~~~---~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 203 DVVIDAVGGP---ETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred CEEEECCCCH---HHHHHHHHhcccCCEEEEE
Confidence 9998654321 3567778889999998864
No 316
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.15 E-value=0.22 Score=46.31 Aligned_cols=98 Identities=7% Similarity=0.032 Sum_probs=66.8
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~ 201 (272)
+++.+|||.--.+..+-+.. --.|+.+|+|+-.++.+..... ......++...|.....- ++++||+|+.
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~f------edESFdiVId 120 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVF------EDESFDIVID 120 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccC------CCcceeEEEe
Confidence 89999999887666655532 2369999999999887765442 122346777777755322 2688998875
Q ss_pred cCC-------------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097 202 DAE-------------KRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 202 d~~-------------~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
-+. .......+.++.++|++||..+.--
T Consensus 121 kGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 121 KGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred cCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 332 1123456788899999999866543
No 317
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=94.10 E-value=0.28 Score=43.25 Aligned_cols=103 Identities=16% Similarity=0.101 Sum_probs=59.0
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCC----------------------------
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK---------------------------- 172 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~---------------------------- 172 (272)
-+||--|||.|..+..++.... .+-|=|.|--|+-...=.+......++
T Consensus 152 i~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 152 IRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred ceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 4789999999999999997532 333445555444322211111111111
Q ss_pred -----------EEEEEcChhHHHHHHHhCCCCCceEEEEEcC---CccchHHHHHHHHccCCCCcEEEEeC
Q 024097 173 -----------VKIKHGLAADSLKALILNGEASSYDFAFVDA---EKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 173 -----------v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~---~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
..+-.||+.+..+.- ...+.||+|+... ..++..++++.+.++|+|||+.|=-.
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s---~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlG 296 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTS---SGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLG 296 (369)
T ss_pred cccccCCCCCCccccccceeEEecCc---CCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEecc
Confidence 122234444432210 0124689886432 24567889999999999999988543
No 318
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=94.06 E-value=0.99 Score=35.42 Aligned_cols=101 Identities=17% Similarity=0.240 Sum_probs=53.7
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
.-|||+|-|.|..=-.+-+.+| +-+|+.+|..-.... ....+.-.++.||+.+.++.+..- ..+.-++-
T Consensus 30 G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~tl~~~~~~--g~~a~laH 98 (160)
T PF12692_consen 30 GPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP--------SSTPPEEDLILGDIRETLPALARF--GAGAALAH 98 (160)
T ss_dssp S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G--------GG---GGGEEES-HHHHHHHHHHH---S-EEEEE
T ss_pred CceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC--------CCCCchHheeeccHHHHhHHHHhc--CCceEEEE
Confidence 5799999999999999999998 779999998532211 111122468999999988773211 23444444
Q ss_pred EcCCcc---chHH---H-HHHHHccCCCCcEEEEeCCCC
Q 024097 201 VDAEKR---MYQE---Y-FELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 201 ~d~~~~---~~~~---~-l~~~~~lLkpgG~lvi~d~~~ 232 (272)
.|-... .... . -..+..+|.|||+++-..-+.
T Consensus 99 aD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 99 ADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp E----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred eecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 443321 1111 2 233458999999999876554
No 319
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.01 E-value=0.57 Score=41.85 Aligned_cols=108 Identities=24% Similarity=0.283 Sum_probs=69.1
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~ 193 (272)
+..++.+|.-+||| .|..++.-|+... ..+++++|++++.++.|++ .|..+-+.-... |..+.+..+- +
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~----fGAT~~vn~~~~~~vv~~i~~~T----~ 252 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKK----FGATHFVNPKEVDDVVEAIVELT----D 252 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHh----cCCceeecchhhhhHHHHHHHhc----C
Confidence 44577899999997 5777777777665 6799999999999998877 454432222222 3444444442 2
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
+..|.+|-... ....++..+..+.++|..++-.+--.|.
T Consensus 253 gG~d~~~e~~G---~~~~~~~al~~~~~~G~~v~iGv~~~~~ 291 (366)
T COG1062 253 GGADYAFECVG---NVEVMRQALEATHRGGTSVIIGVAGAGQ 291 (366)
T ss_pred CCCCEEEEccC---CHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 36777764322 2225666666677789888865554443
No 320
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=93.92 E-value=0.16 Score=48.47 Aligned_cols=100 Identities=11% Similarity=0.134 Sum_probs=63.0
Q ss_pred hcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH-----HHHHHHhCC
Q 024097 117 ILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD-----SLKALILNG 191 (272)
Q Consensus 117 ~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----~~~~~~~~~ 191 (272)
+.+...|||+||..|.|....++.+|.++-|+|+|+.|-. ... ++...+.|... -+.....
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~-~c~t~v~dIttd~cr~~l~k~l~-- 107 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIP-NCDTLVEDITTDECRSKLRKILK-- 107 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCC-ccchhhhhhhHHHHHHHHHHHHH--
Confidence 4467789999999999999999999988899999997731 111 22222233221 1122221
Q ss_pred CCCceEEEEEcCCcc----c----------hHHHHHHHHccCCCCcEEEEeCCCC
Q 024097 192 EASSYDFAFVDAEKR----M----------YQEYFELLLQLIRVGGIIVIDNVLW 232 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~----~----------~~~~l~~~~~lLkpgG~lvi~d~~~ 232 (272)
..+.|+|+.|+.+. + ....+..+...|+.||.+ ++.+..
T Consensus 108 -t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~f-vtkvfr 160 (780)
T KOG1098|consen 108 -TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTF-VTKVFR 160 (780)
T ss_pred -hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcc-cccccc
Confidence 34669999887522 1 122344455778999994 444443
No 321
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.89 E-value=0.66 Score=41.52 Aligned_cols=103 Identities=17% Similarity=0.252 Sum_probs=65.8
Q ss_pred HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 115 ~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
....++++||-.|. |.|..++.||++++ +.++++--+++..+.++ ..|-..-+.+...|..+...++. +
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~~~~v~~~t---~ 208 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELLK----ELGADHVINYREEDFVEQVRELT---G 208 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHHH----hcCCCEEEcCCcccHHHHHHHHc---C
Confidence 33556889999984 45667788898875 36677776665554443 34544345555566655554442 1
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
...+|+|+-.... ..+....+.|+++|.++.-..
T Consensus 209 g~gvDvv~D~vG~----~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 209 GKGVDVVLDTVGG----DTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CCCceEEEECCCH----HHHHHHHHHhccCCEEEEEec
Confidence 2469998854332 356668888999999987544
No 322
>PLN02740 Alcohol dehydrogenase-like
Probab=93.89 E-value=0.57 Score=42.66 Aligned_cols=103 Identities=14% Similarity=0.215 Sum_probs=60.7
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE--cChhHHHHHHHhCC
Q 024097 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNG 191 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~ 191 (272)
....++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 265 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT--- 265 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh---
Confidence 345577899999875 3445566676654 2269999999988877754 45432121111 11222222221
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeC
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN 229 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d 229 (272)
.+.+|+||-.... ...+......+++| |.+++-.
T Consensus 266 -~~g~dvvid~~G~---~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 266 -GGGVDYSFECAGN---VEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred -CCCCCEEEECCCC---hHHHHHHHHhhhcCCCEEEEEc
Confidence 1269988754332 23566777788886 8877643
No 323
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.85 E-value=0.34 Score=43.53 Aligned_cols=96 Identities=14% Similarity=0.182 Sum_probs=58.6
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeC---ChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACER---DARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~---s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
.++.+||-+|+| .|..+..+++..+ .+|++++. +++..+.+++ .|.. .+.....+..+ .. . .
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga~-~v~~~~~~~~~-~~-~-----~ 236 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGAT-YVNSSKTPVAE-VK-L-----V 236 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCCE-EecCCccchhh-hh-h-----c
Confidence 467899999886 3666677777754 58999987 5666555543 4432 12111111111 11 0 2
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
+.+|+||-.... ...+....+.|++||.+++-..
T Consensus 237 ~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 237 GEFDLIIEATGV---PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCCCEEEECcCC---HHHHHHHHHHccCCcEEEEEec
Confidence 569988854432 2357788899999999987543
No 324
>PTZ00357 methyltransferase; Provisional
Probab=93.85 E-value=0.34 Score=47.13 Aligned_cols=103 Identities=12% Similarity=0.084 Sum_probs=66.0
Q ss_pred EEEEEcCccCHHHHHHHHH---CCCCcEEEEEeCChhHHHHHHHHHH-HhCC-------CCCEEEEEcChhHHHHHHHhC
Q 024097 122 RCIEVGVYTGYSSLAIALV---LPESGCLVACERDARSLEVAKKYYE-RAGV-------SHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~---~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~-------~~~v~~~~~d~~~~~~~~~~~ 190 (272)
.|+-+|+|.|-+.-...++ .+...+|++||.|+..+.....+.. ...+ .++|+++..|..++.......
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5888999999876655444 3445689999999776555544432 2233 356999999998863210000
Q ss_pred -----CCCCceEEEEEc-----CCccchHHHHHHHHccCCC----CcE
Q 024097 191 -----GEASSYDFAFVD-----AEKRMYQEYFELLLQLIRV----GGI 224 (272)
Q Consensus 191 -----~~~~~fDlV~~d-----~~~~~~~~~l~~~~~lLkp----gG~ 224 (272)
..-+++|+|+.. ++-+--++.|.-+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 001479999853 2233456777777788876 775
No 325
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=93.73 E-value=0.74 Score=41.15 Aligned_cols=103 Identities=14% Similarity=0.216 Sum_probs=59.2
Q ss_pred hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
..++.+||=.|+| .|..+..+++..+ ...|++++.+++..+.+++ .|...-+.....+ .+.+.... ....
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~---~~~~ 228 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL---RELR 228 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh---cCCC
Confidence 3467899988875 3445566677654 2247899999987776643 3432111111112 12122221 1246
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
+|.+++|..-. ...+....+.|++||.+++-..
T Consensus 229 ~d~~v~d~~G~--~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 229 FDQLILETAGV--PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred CCeEEEECCCC--HHHHHHHHHHhhcCCEEEEEcc
Confidence 78455554322 2367778899999999997544
No 326
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.70 E-value=0.45 Score=42.00 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=61.7
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~ 201 (272)
+++|+-||.|..++.+.++- --.+.++|+++.+.+.-+.|+. ....+|..+....... +.+|+++.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~----~~~D~l~g 67 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP----KDVDLLIG 67 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH----HT-SEEEE
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc----ccceEEEe
Confidence 79999999999999988752 2368999999999888888873 7788888775433221 15899886
Q ss_pred cCC---------------ccc--hHHHHHHHHccCCCCcEEEEeCCC
Q 024097 202 DAE---------------KRM--YQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 202 d~~---------------~~~--~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
..+ ... +..++ .+.+.++| -++++.||.
T Consensus 68 gpPCQ~fS~ag~~~~~~d~r~~L~~~~~-~~v~~~~P-k~~~~ENV~ 112 (335)
T PF00145_consen 68 GPPCQGFSIAGKRKGFDDPRNSLFFEFL-RIVKELKP-KYFLLENVP 112 (335)
T ss_dssp E---TTTSTTSTHHCCCCHTTSHHHHHH-HHHHHHS--SEEEEEEEG
T ss_pred ccCCceEeccccccccccccchhhHHHH-HHHhhccc-eEEEecccc
Confidence 432 011 22233 33455678 568888884
No 327
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=93.57 E-value=0.21 Score=39.28 Aligned_cols=43 Identities=21% Similarity=0.219 Sum_probs=28.6
Q ss_pred EEcCccC--HHHHHHH-HHCCCCcEEEEEeCChhHHHHHHHH--HHHh
Q 024097 125 EVGVYTG--YSSLAIA-LVLPESGCLVACERDARSLEVAKKY--YERA 167 (272)
Q Consensus 125 EiG~G~G--~~~~~la-~~~~~~~~v~~iD~s~~~~~~a~~~--~~~~ 167 (272)
|||++.| ..+..++ +...+.++|+++|.+|..++..+++ +...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~ 48 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN 48 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence 8999999 6666654 2455578999999999999998888 5444
No 328
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.56 E-value=0.86 Score=41.57 Aligned_cols=106 Identities=11% Similarity=0.245 Sum_probs=62.4
Q ss_pred CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC------C-
Q 024097 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------E- 192 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~------~- 192 (272)
.+|--||- ||.++.+|-.+. .+.+|+|+|+++..++.... | +..+..-+..+.+......+ +
T Consensus 10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~ 79 (436)
T COG0677 10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP 79 (436)
T ss_pred eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence 45555655 566666555443 24689999999987764422 2 23333333333233222211 1
Q ss_pred --CCceEEEEEcCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097 193 --ASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV 236 (272)
Q Consensus 193 --~~~fDlV~~d~~----------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~ 236 (272)
-...|++++.-+ ........+.+.+.|++|-.+++....++|..
T Consensus 80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTT 135 (436)
T COG0677 80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTT 135 (436)
T ss_pred hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcH
Confidence 125677765432 11234556677899999999999999999963
No 329
>PLN02827 Alcohol dehydrogenase-like
Probab=93.55 E-value=0.64 Score=42.37 Aligned_cols=102 Identities=17% Similarity=0.179 Sum_probs=59.1
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE--cChhHHHHHHHhCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNGE 192 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~ 192 (272)
...++.+||-.|+| .|..+..+++..+ ...|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~---- 260 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT---- 260 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh----
Confidence 34567899988874 3445555666654 2368999999887776644 45421111111 12222222221
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeC
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDN 229 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d 229 (272)
.+.+|+||-.... ...+..+.+.+++| |.+++-.
T Consensus 261 ~~g~d~vid~~G~---~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 261 GGGADYSFECVGD---TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCCCEEEECCCC---hHHHHHHHHhhccCCCEEEEEC
Confidence 2368988753332 23467778889998 9998643
No 330
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=93.54 E-value=0.19 Score=43.24 Aligned_cols=47 Identities=19% Similarity=0.077 Sum_probs=37.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCC-------CcEEEEEeCChhHHHHHHHHHHH
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPE-------SGCLVACERDARSLEVAKKYYER 166 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~-------~~~v~~iD~s~~~~~~a~~~~~~ 166 (272)
+-+|+|+|+|+|..+.-+++.+.. ..+++.||+||.+.+.-++.+..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 369999999999999999887652 25899999999999888887754
No 331
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=93.47 E-value=1.5 Score=35.08 Aligned_cols=107 Identities=21% Similarity=0.176 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHhh--cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 103 VSPDQAQLLAMLVQI--LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~--~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
-+..+.+.|...+.. .+..+|+=|||=+-+..+.- ...+..+++..|++... ...+ +. +|+.=|.
T Consensus 7 Ys~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~--~~-~F~fyD~ 73 (162)
T PF10237_consen 7 YSDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFG--GD-EFVFYDY 73 (162)
T ss_pred cCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcC--Cc-ceEECCC
Confidence 356666666665554 35579999998554444332 12336689999998743 3322 22 3333333
Q ss_pred hH--HHH-HHHhCCCCCceEEEEEcCCcc---chHHHHHHHHccCCCCcEEEE
Q 024097 181 AD--SLK-ALILNGEASSYDFAFVDAEKR---MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 181 ~~--~~~-~~~~~~~~~~fDlV~~d~~~~---~~~~~l~~~~~lLkpgG~lvi 227 (272)
.+ .++ .+ .++||+|++|.+.- -.....+.+.-++++++.+++
T Consensus 74 ~~p~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~ 121 (162)
T PF10237_consen 74 NEPEELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL 121 (162)
T ss_pred CChhhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence 22 222 22 47999999999842 123334555566678777775
No 332
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=93.43 E-value=0.96 Score=40.32 Aligned_cols=94 Identities=17% Similarity=0.168 Sum_probs=59.5
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
....++.+||-.|+| .|..+..+++.. +.+|++++.+++..+.+++ .|...-+. ..+. ..
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~vi~-----~~~~--------~~ 221 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAASAGG-----AYDT--------PP 221 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCceecc-----cccc--------Cc
Confidence 344567899999864 344556667665 4689999999887766655 45432111 1110 02
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
+.+|+++..... ...+....+.|++||.+++-..
T Consensus 222 ~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 222 EPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence 457876643322 2367888899999999988554
No 333
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=93.41 E-value=1.3 Score=39.04 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=62.8
Q ss_pred HHhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097 114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (272)
Q Consensus 114 l~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 191 (272)
.....++.+||=.|. +.|..+..+++.. +.+|++++.+++..+.+++ .|...-+.....+..+.+... .
T Consensus 138 ~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~---~ 208 (329)
T cd08294 138 ICKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA---A 208 (329)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH---C
Confidence 344557789988874 4666777788876 4689999998887766654 354321222112222222222 1
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
...+|+||-... . ..++...+.|+++|.++.-
T Consensus 209 -~~gvd~vld~~g-~---~~~~~~~~~l~~~G~iv~~ 240 (329)
T cd08294 209 -PDGIDCYFDNVG-G---EFSSTVLSHMNDFGRVAVC 240 (329)
T ss_pred -CCCcEEEEECCC-H---HHHHHHHHhhccCCEEEEE
Confidence 246998884322 1 3567888999999999863
No 334
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.38 E-value=1 Score=39.02 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=59.8
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
.++++||-+|+| .|..+..+++..+ ..+|+++|.+++..+.+++ .|... .+...+..+.+..+. ....+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~--~i~~~~~~~~~~~~~---~~~g~ 188 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATA--LAEPEVLAERQGGLQ---NGRGV 188 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcE--ecCchhhHHHHHHHh---CCCCC
Confidence 367899988875 3555566677653 2249999999887776655 34321 111111111122111 12468
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
|+||-.... ...++.+.+.|+++|.++.-...
T Consensus 189 d~vid~~G~---~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 189 DVALEFSGA---TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CEEEECCCC---hHHHHHHHHHhcCCCEEEEeccC
Confidence 988753322 23577788899999999976544
No 335
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.30 E-value=1.7 Score=38.40 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=62.2
Q ss_pred HHhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhC
Q 024097 114 LVQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILN 190 (272)
Q Consensus 114 l~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~ 190 (272)
.....++.+||=.|. |.|..+..+++.. +.++++++.+++..+.+++ .|...-+..... +..+.....
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~--- 203 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA--- 203 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh---
Confidence 344567789998884 4677777788875 4689999998887766643 454211111111 122222222
Q ss_pred CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+.+|+||-.... ..++...+.|++||.++.-
T Consensus 204 -~~~gvdvv~d~~G~----~~~~~~~~~l~~~G~iv~~ 236 (325)
T TIGR02825 204 -SPDGYDCYFDNVGG----EFSNTVIGQMKKFGRIAIC 236 (325)
T ss_pred -CCCCeEEEEECCCH----HHHHHHHHHhCcCcEEEEe
Confidence 12469988843221 2457788999999999864
No 336
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.27 E-value=0.99 Score=39.88 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=70.0
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCC--CCCEEEEEcChhH--HHHHHHhCC-CCC
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGV--SHKVKIKHGLAAD--SLKALILNG-EAS 194 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~--~~~~~~~~~-~~~ 194 (272)
...|+-+|||-= |...---.+++.+|+-+|. |+.++.=++.++..+. ..+.+++..|..+ +...+.+.| +.+
T Consensus 93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 578999999654 3332211233456666666 7788877777776653 2368999999883 455555444 334
Q ss_pred ceEEEEEcCC-----ccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 195 SYDFAFVDAE-----KRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 195 ~fDlV~~d~~-----~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
.--++++.+. .+....++..+..+..||..++++-.
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~ 210 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS 210 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 4445555443 45577889999999989888777643
No 337
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=93.25 E-value=0.14 Score=45.03 Aligned_cols=97 Identities=20% Similarity=0.233 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhhcC-CC-E---EEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097 106 DQAQLLAMLVQILG-AQ-R---CIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL 179 (272)
Q Consensus 106 ~~~~~l~~l~~~~~-~~-~---VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 179 (272)
....++..|+...+ ++ + =+|||+ |.+.++.+... ..+...+++|+++..+..|++++.++++.+++.+++..
T Consensus 84 nYihwI~DLLss~q~~k~~i~~GiDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~ 161 (419)
T KOG2912|consen 84 NYIHWIEDLLSSQQSDKSTIRRGIDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVE 161 (419)
T ss_pred hhHHHHHHHhhcccCCCcceeeeeeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEec
Confidence 34455566665442 22 2 257765 55666655432 22467899999999999999999999999999988876
Q ss_pred hhHH-HHHHHhCCCCCceEEEEEcCC
Q 024097 180 AADS-LKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 180 ~~~~-~~~~~~~~~~~~fDlV~~d~~ 204 (272)
..+. +.+......+..||++.++.+
T Consensus 162 ~~ktll~d~~~~~~e~~ydFcMcNPP 187 (419)
T KOG2912|consen 162 PQKTLLMDALKEESEIIYDFCMCNPP 187 (419)
T ss_pred chhhcchhhhccCccceeeEEecCCc
Confidence 5442 222211111345898888765
No 338
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.21 E-value=1.2 Score=39.77 Aligned_cols=104 Identities=23% Similarity=0.302 Sum_probs=62.2
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
...++++||-.|+| .|..+..+++..+ ...+++++.+++..+.+++ .|...-+.....+..+.+..+. ...
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~ 234 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT---GGK 234 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh---CCC
Confidence 44567889888865 4556666777654 2369999999887766654 4542212222222222222221 124
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
.+|+++-.... ...+..+.+.|+++|.++.-..
T Consensus 235 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 235 GVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred CCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence 69988854332 2357788889999999886443
No 339
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.20 E-value=1.2 Score=39.66 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=58.5
Q ss_pred CEEEEEcC--ccCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 121 QRCIEVGV--YTGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 121 ~~VLEiG~--G~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.+||=.|+ |.|..+..+++..+ . +|++++.+++..+.+++. .|...-+.....+..+.+..+ . ...+|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G--~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~---~-~~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLG--CSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLREL---C-PEGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHH---C-CCCce
Confidence 78988885 46777777888764 5 799999988776665543 354321221122232323322 1 24699
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+||-.... ..++.+.+.|+++|.++.
T Consensus 227 ~vid~~g~----~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 227 VYFDNVGG----EISDTVISQMNENSHIIL 252 (345)
T ss_pred EEEECCCc----HHHHHHHHHhccCCEEEE
Confidence 88843221 135778889999999986
No 340
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.17 E-value=3.3 Score=33.86 Aligned_cols=103 Identities=15% Similarity=0.274 Sum_probs=54.8
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHH------------HHHhCCCCCEEEEEcChhHHHHHHH
Q 024097 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKY------------YERAGVSHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~------------~~~~~~~~~v~~~~~d~~~~~~~~~ 188 (272)
+|--||.| +.++.+|..+. .+.+|+++|++++.++..++- +++..-..++++. .|..+.+
T Consensus 2 ~I~ViGlG--yvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai---- 74 (185)
T PF03721_consen 2 KIAVIGLG--YVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI---- 74 (185)
T ss_dssp EEEEE--S--TTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred EEEEECCC--cchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence 56667665 44444333332 246999999999877655421 1111111233332 2222222
Q ss_pred hCCCCCceEEEEEcCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCcc
Q 024097 189 LNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGKV 236 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~----------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~~ 236 (272)
...|++|+.-+ ........+.+.+.+++|-++++......|..
T Consensus 75 -----~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt 127 (185)
T PF03721_consen 75 -----KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTT 127 (185)
T ss_dssp -----HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHH
T ss_pred -----hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeee
Confidence 34688887543 12245667888899999999999888887753
No 341
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.17 E-value=1.6 Score=38.82 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=62.9
Q ss_pred HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCC
Q 024097 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNG 191 (272)
Q Consensus 115 ~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~ 191 (272)
....++.+||=.|+ |.|..+..+++.. +.++++++.+++..+.+++. .|...-+..... +..+.+... .
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~---~ 218 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRY---F 218 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHh---C
Confidence 44567789998886 4666777788875 46899999888876666543 344321221111 232222222 1
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
...+|+||-... . ..++.+.+.|+++|.++.-
T Consensus 219 -~~gvd~v~d~~g-~---~~~~~~~~~l~~~G~iv~~ 250 (338)
T cd08295 219 -PNGIDIYFDNVG-G---KMLDAVLLNMNLHGRIAAC 250 (338)
T ss_pred -CCCcEEEEECCC-H---HHHHHHHHHhccCcEEEEe
Confidence 246998884322 1 4577888999999999863
No 342
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.86 E-value=1.2 Score=40.69 Aligned_cols=104 Identities=13% Similarity=0.083 Sum_probs=57.8
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
++.+|+=+|+| .|..+...++.++ .+|+.+|.+++..+.+...+ +. .+.....+..+ +... -..+|
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~~~-l~~~-----l~~aD 232 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEF---GG--RIHTRYSNAYE-IEDA-----VKRAD 232 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCHHH-HHHH-----HccCC
Confidence 55679999887 4556666666554 58999999987665544332 21 12222222222 2222 15689
Q ss_pred EEEEcCCc--cchHH-HHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 198 FAFVDAEK--RMYQE-YFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 198 lV~~d~~~--~~~~~-~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
+||..... ...+. +-+...+.++||++|+--.+...|.
T Consensus 233 vVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~ 273 (370)
T TIGR00518 233 LLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGC 273 (370)
T ss_pred EEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCC
Confidence 99975421 11111 2355667789988766433444443
No 343
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=92.82 E-value=1 Score=40.05 Aligned_cols=102 Identities=23% Similarity=0.318 Sum_probs=59.3
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
...++.+||-.|+| .|..+..+++..+ ..++++++.+++..+.+++ .+...-+.....+..+.+... ...+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~---~~~~ 235 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILEL---TGGR 235 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHH---cCCC
Confidence 34567788887764 3666677777654 2478888888776665543 332211122222222222222 1135
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+|++|-.... ...+....+.|+++|.++.-
T Consensus 236 ~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 266 (347)
T cd05278 236 GVDCVIEAVGF---EETFEQAVKVVRPGGTIANV 266 (347)
T ss_pred CCcEEEEccCC---HHHHHHHHHHhhcCCEEEEE
Confidence 69988843221 13677788899999998854
No 344
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=92.60 E-value=0.42 Score=42.18 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=54.4
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
++++||=+|+| .|..+..+++..+ ...|+++|.+++.++.+.+. . ++ |..+. . ...+|
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~-----~~g~D 202 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P-----RRDYR 202 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c-----CCCCC
Confidence 56788888876 4666677777764 23477888888766555431 1 11 11110 0 24689
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
+||-.... ...++.+.++|++||.+++-.
T Consensus 203 vvid~~G~---~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 203 AIYDASGD---PSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred EEEECCCC---HHHHHHHHHhhhcCcEEEEEe
Confidence 88854332 235678889999999999744
No 345
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.55 E-value=0.092 Score=38.97 Aligned_cols=40 Identities=23% Similarity=0.589 Sum_probs=28.6
Q ss_pred ceEEEEEcCC---------ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097 195 SYDFAFVDAE---------KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (272)
Q Consensus 195 ~fDlV~~d~~---------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g 234 (272)
+||+|++-.. ......+|+.++.+|+|||.+++.---|..
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~s 49 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKS 49 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHH
Confidence 4899987543 334677999999999999999998655544
No 346
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=92.22 E-value=2.2 Score=38.67 Aligned_cols=103 Identities=17% Similarity=0.226 Sum_probs=60.4
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE--cChhHHHHHHHhCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH--GLAADSLKALILNGE 192 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~~~~~~~~~~~ 192 (272)
...++.+||-+|+| .|..+..+|+..+ ..+|+++|.+++..+.+++ .|...-+.... .+..+.+..+.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---- 252 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT---- 252 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh----
Confidence 44567899999875 3556666777654 2379999999988877754 35432111111 11112222221
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 230 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~ 230 (272)
.+.+|+||-.... ...+..+.+.+++| |.+++-..
T Consensus 253 ~~g~d~vid~~G~---~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 253 DGGVDYSFECIGN---VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHhhcCCCeEEEEec
Confidence 1368988743332 23567778888886 98876443
No 347
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=92.18 E-value=2.9 Score=38.37 Aligned_cols=106 Identities=17% Similarity=0.234 Sum_probs=61.2
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~ 193 (272)
...++++||=.|+| .|..+..+++..+ ...++++|.+++..+.+++ .|.. .+.... .+..+.+..+. ..
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~-~v~~~~~~~~~~~v~~~~---~~ 252 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE-TVDLSKDATLPEQIEQIL---GE 252 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe-EEecCCcccHHHHHHHHc---CC
Confidence 34567788777775 3555566677654 2346677888877777765 3542 111111 12222222221 12
Q ss_pred CceEEEEEcCCccc-----------hHHHHHHHHccCCCCcEEEEeCC
Q 024097 194 SSYDFAFVDAEKRM-----------YQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 194 ~~fDlV~~d~~~~~-----------~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
..+|+||-...... ....++.+.+++++||.+++-.+
T Consensus 253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 253 PEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 46898885433221 12468888999999999998554
No 348
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.07 E-value=0.93 Score=35.90 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=57.2
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhC------CCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAG------VSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
+|.-||+|.+..++...-... +.+|+....+++.++..++.-.... +..++.+ ..|..+.+ ..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~---------~~ 69 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL---------ED 69 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH---------TT
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh---------Cc
Confidence 355677776665554333222 4589999999977766654322101 1123433 33443322 45
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
.|+|++.-+......+++.+.+.++++-.+++
T Consensus 70 ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 70 ADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp -SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred ccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 69999988888888999999999988777775
No 349
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=91.89 E-value=2.5 Score=37.48 Aligned_cols=101 Identities=18% Similarity=0.313 Sum_probs=61.9
Q ss_pred HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
....++.+||-.|+|. |..+..+++.. +.+++++..+++..+.+++ .+..+-+.....+..+.+.... ..
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~~ 225 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT---DG 225 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh---CC
Confidence 3445678999998763 66777788775 4789999888887766643 3332212222222223222221 13
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
..+|+++-.... ...+..+.+.|+++|.++.
T Consensus 226 ~~vd~vld~~g~---~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 226 EGADVVIDATGN---PASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCEEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 468998864322 2356778889999999885
No 350
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=91.85 E-value=0.13 Score=47.08 Aligned_cols=64 Identities=19% Similarity=0.041 Sum_probs=56.2
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCC-EEEEEcChhHHH
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHK-VKIKHGLAADSL 184 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~ 184 (272)
.++..|.|+.||.|-.++..+.. +++|++-|.+++++++.+.++..+.+... ++++..|+.+.+
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 46788999999999999988874 58999999999999999999988777665 999999998876
No 351
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=91.69 E-value=2.4 Score=38.06 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=56.3
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 119 GAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
++.+||=.|+| .|..+..+++..+ . +|++++.+++..+.++ ..|...-+.....+..+....+........+
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G--~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~ 250 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAG--ARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDITGGRGA 250 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHhCCCCC
Confidence 66788888754 3444455666654 5 8999998887666553 2454321111111111111111111113469
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|+||-.... ...+....+.|+++|.++.-
T Consensus 251 d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 279 (361)
T cd08231 251 DVVIEASGH---PAAVPEGLELLRRGGTYVLV 279 (361)
T ss_pred cEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence 988854322 23567778899999999864
No 352
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.57 E-value=0.26 Score=44.48 Aligned_cols=98 Identities=22% Similarity=0.259 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+.....-+.++++...++.+|+|+.|-.|..|..++....+.+++.++|.+++..+..++.+..+|... ++...+|+.
T Consensus 196 ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~ 274 (413)
T KOG2360|consen 196 ILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFL 274 (413)
T ss_pred EEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-ccccccccc
Confidence 4445555667777777788999999999999999999988878999999999999999999999999864 777788887
Q ss_pred HHHHHHHhCCCCCceEEEEEcCC
Q 024097 182 DSLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
.. .... .-.....|++|+.
T Consensus 275 ~t-~~~~---~~~~v~~iL~Dps 293 (413)
T KOG2360|consen 275 NT-ATPE---KFRDVTYILVDPS 293 (413)
T ss_pred CC-CCcc---cccceeEEEeCCC
Confidence 64 2110 0134456677654
No 353
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.56 E-value=1.7 Score=40.24 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=56.6
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..+++|+-+|+|. |......++.. +++|+.+|.++...+.|++ .|. +.. +..+ .+ ..+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e---~v------~~a 258 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE---AV------KEG 258 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH---HH------cCC
Confidence 3688999999984 55555556655 4689999999987766654 343 222 1111 11 357
Q ss_pred EEEEEcCCccchHHHHHH-HHccCCCCcEEEEeC
Q 024097 197 DFAFVDAEKRMYQEYFEL-LLQLIRVGGIIVIDN 229 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~-~~~lLkpgG~lvi~d 229 (272)
|+||..... ...+.. ..+.+|+||+++.-.
T Consensus 259 DVVI~atG~---~~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 259 DIFVTTTGN---KDIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred CEEEECCCC---HHHHHHHHHhcCCCCcEEEEeC
Confidence 988865432 234554 488999999987643
No 354
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=91.53 E-value=0.7 Score=40.81 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=68.3
Q ss_pred CCEEEEEcCccCHHHHHHHHHC-------------------CCCcEEEEEeCCh--hHHHHHHHHHHHh----------C
Q 024097 120 AQRCIEVGVYTGYSSLAIALVL-------------------PESGCLVACERDA--RSLEVAKKYYERA----------G 168 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~-------------------~~~~~v~~iD~s~--~~~~~a~~~~~~~----------~ 168 (272)
..+||-||.|.|.-..+++..+ ++...++.||+.+ ..+......+... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3699999999999888877766 0124899999975 3333333333322 0
Q ss_pred C----CC--CEEEEEcChhHHHH-HHHhCCCCCceEEEEEc--------CCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 169 V----SH--KVKIKHGLAADSLK-ALILNGEASSYDFAFVD--------AEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 169 ~----~~--~v~~~~~d~~~~~~-~~~~~~~~~~fDlV~~d--------~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
+ .+ +++|.+.|++.... ++...-.....|+|-+- ........|+..+-..++||.+++|-|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 1 11 47889999876432 21111011235555211 1255677899999999999999988553
No 355
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=91.51 E-value=2.8 Score=37.88 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=61.0
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc--ChhHHHHHHHhCC
Q 024097 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG 191 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~ 191 (272)
....++.+||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~--- 253 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT--- 253 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh---
Confidence 344567899988864 3445566677654 2279999999988776654 454321111111 1222222221
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 230 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~ 230 (272)
.+.+|+||-.... ...+..+.+.|+++ |.++.-..
T Consensus 254 -~~g~d~vid~~g~---~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 254 -DGGVDYTFECIGN---VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred -CCCCcEEEECCCC---hHHHHHHHHhhccCCCeEEEEcc
Confidence 2368988853322 23567778889887 88886543
No 356
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=91.48 E-value=0.93 Score=41.50 Aligned_cols=83 Identities=19% Similarity=0.160 Sum_probs=51.5
Q ss_pred CEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCce
Q 024097 121 QRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY 196 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~f 196 (272)
++||-|||| ..+...+..+. .+.+|+..|.+++..+.+..... .+++..+-|+.+. +..++ ..+
T Consensus 2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li-----~~~ 69 (389)
T COG1748 2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI-----KDF 69 (389)
T ss_pred CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH-----hcC
Confidence 579999994 44444444432 13699999999887766655431 2688888887663 33332 456
Q ss_pred EEEEEcCCccchHHHHHHH
Q 024097 197 DFAFVDAEKRMYQEYFELL 215 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~ 215 (272)
|+|+...+......+++.|
T Consensus 70 d~VIn~~p~~~~~~i~ka~ 88 (389)
T COG1748 70 DLVINAAPPFVDLTILKAC 88 (389)
T ss_pred CEEEEeCCchhhHHHHHHH
Confidence 9998766544333444443
No 357
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.46 E-value=1 Score=40.14 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=59.0
Q ss_pred EEEEcCccCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE
Q 024097 123 CIEVGVYTGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFV 201 (272)
Q Consensus 123 VLEiG~G~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~ 201 (272)
|+|+.||.|..+..+.++ +.+ +.++|+++.+.+.-+.|+. + .++.+|..+....- ...+|+++.
T Consensus 1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~-----~~~~dvl~g 65 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD-----IPDFDILLG 65 (315)
T ss_pred CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh-----CCCcCEEEe
Confidence 689999999999988764 344 5789999998887777652 1 34567776654321 245898875
Q ss_pred cCC------------ccc-----hHHHHHHHHccCCCCcEEEEeCCC
Q 024097 202 DAE------------KRM-----YQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 202 d~~------------~~~-----~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
..+ ..+ ...++ .+.+.++| -++++.|+.
T Consensus 66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~-r~i~~~~P-~~~v~ENV~ 110 (315)
T TIGR00675 66 GFPCQPFSIAGKRKGFEDTRGTLFFEIV-RILKEKKP-KFFLLENVK 110 (315)
T ss_pred cCCCcccchhcccCCCCCchhhHHHHHH-HHHhhcCC-CEEEeeccH
Confidence 432 011 11222 23345677 478888885
No 358
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=91.40 E-value=5.3 Score=35.46 Aligned_cols=95 Identities=17% Similarity=0.171 Sum_probs=52.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCChhHH-HHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLP--ESGCLVACERDARSL-EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s~~~~-~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
..+++|+-||+ |..+..+++.+. ...+|+.++.+++.. +.+++ .+. ... +..+....+ .
T Consensus 176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~----~g~----~~~--~~~~~~~~l------~ 237 (311)
T cd05213 176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE----LGG----NAV--PLDELLELL------N 237 (311)
T ss_pred ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH----cCC----eEE--eHHHHHHHH------h
Confidence 46789999988 445555444432 135799999998654 33332 232 222 122222222 4
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
.+|+||...........+..+.+..+.++.+++|-.
T Consensus 238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 579999876654443444444443334677888744
No 359
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.32 E-value=1.5 Score=38.67 Aligned_cols=88 Identities=16% Similarity=0.216 Sum_probs=50.0
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCC---cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
++|.=||+|. .+..++..+... .+|+++|.+++..+.+++ .+... . ...+..+ . -...|
T Consensus 7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~----~-----~~~aD 68 (307)
T PRK07502 7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAE----A-----VKGAD 68 (307)
T ss_pred cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHH----H-----hcCCC
Confidence 4788888764 444444433212 379999999887665543 33211 1 1111111 1 14568
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV 226 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lv 226 (272)
+|++..+......+++.+...+++|++++
T Consensus 69 vViiavp~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 69 LVILCVPVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred EEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 88887765555666677777777776443
No 360
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.29 E-value=2.6 Score=36.73 Aligned_cols=103 Identities=17% Similarity=0.242 Sum_probs=72.4
Q ss_pred cCCCEEEEEcCccCHHHHHHHHH-CCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALV-LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..++.|+-+| ---..+++++.. +| -+|..+|+++..+....+..++.|.. +++.+.-|....+|+-. ...|
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~----~~kF 222 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL----KRKF 222 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH----HhhC
Confidence 3567899999 444555554432 33 58999999999999999999888986 48888888777555432 3789
Q ss_pred EEEEEcCC--ccchHHHHHHHHccCCCC---cEEEEe
Q 024097 197 DFAFVDAE--KRMYQEYFELLLQLIRVG---GIIVID 228 (272)
Q Consensus 197 DlV~~d~~--~~~~~~~l~~~~~lLkpg---G~lvi~ 228 (272)
|+++.|.+ ......|+..=...|+.- |++-+.
T Consensus 223 DvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT 259 (354)
T COG1568 223 DVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGIT 259 (354)
T ss_pred CeeecCchhhHHHHHHHHhccHHHhcCCCccceEeee
Confidence 99888876 334555666555666665 666553
No 361
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=91.19 E-value=2.1 Score=39.37 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=60.8
Q ss_pred hcCCCEEEEEc-Cc-cCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHh----CCCCCEEEEE----cChhHHHH
Q 024097 117 ILGAQRCIEVG-VY-TGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERA----GVSHKVKIKH----GLAADSLK 185 (272)
Q Consensus 117 ~~~~~~VLEiG-~G-~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~----~~~~~v~~~~----~d~~~~~~ 185 (272)
..++.+|+=+| +| .|..+..+++..+. ..+|+++|.+++.++.+++.+... |.. ..++. .+..+.+.
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~--~~~i~~~~~~~~~~~v~ 250 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIE--LLYVNPATIDDLHATLM 250 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCce--EEEECCCccccHHHHHH
Confidence 34567888887 33 67777777876531 237999999999988887753211 211 12221 12222222
Q ss_pred HHHhCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 186 ALILNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 186 ~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
.+. +...+|+||..... ...+....+.++++|.+++
T Consensus 251 ~~t---~g~g~D~vid~~g~---~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 251 ELT---GGQGFDDVFVFVPV---PELVEEADTLLAPDGCLNF 286 (410)
T ss_pred HHh---CCCCCCEEEEcCCC---HHHHHHHHHHhccCCeEEE
Confidence 221 12468988865432 3457778889998886554
No 362
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=91.11 E-value=3.7 Score=37.44 Aligned_cols=112 Identities=17% Similarity=0.122 Sum_probs=75.0
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHH-------HHHhCC-CCCEEEEEcChhHH--HH
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKY-------YERAGV-SHKVKIKHGLAADS--LK 185 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~-------~~~~~~-~~~v~~~~~d~~~~--~~ 185 (272)
...+.....|+|+|.|......+.... ...-+|+++.....+.|..+ .+..|- .+.++.+++++.+. ..
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 345678899999999999888877654 34568888877665555332 222343 34588889988763 22
Q ss_pred HHHhCCCCCceEEEEEcCCccc--hHHHHHHHHccCCCCcEEEEeCCCCC
Q 024097 186 ALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIVIDNVLWH 233 (272)
Q Consensus 186 ~~~~~~~~~~fDlV~~d~~~~~--~~~~l~~~~~lLkpgG~lvi~d~~~~ 233 (272)
.+ ....++||++...-+ ..--+++++.-+++|-.|+-.+-+..
T Consensus 268 eI-----~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~~ 312 (419)
T KOG3924|consen 268 EI-----QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLVP 312 (419)
T ss_pred HH-----hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEeccccccc
Confidence 23 356789998765222 22234577888899999998766654
No 363
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.91 E-value=1.4 Score=35.50 Aligned_cols=100 Identities=21% Similarity=0.165 Sum_probs=60.6
Q ss_pred EcCccCHHHHHHHHHCCCCcEEEEEeCCh--hHHHH---HHHHHHHhCCCCCEEEE-EcChhHHHHHHHhCCCCCceEEE
Q 024097 126 VGVYTGYSSLAIALVLPESGCLVACERDA--RSLEV---AKKYYERAGVSHKVKIK-HGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 126 iG~G~G~~~~~la~~~~~~~~v~~iD~s~--~~~~~---a~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
||=|.=.+++.|++..+...+++++-.+. +..+. +.++++..... .+++. --|+........ .....||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~-g~~V~~~VDat~l~~~~~--~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELREL-GVTVLHGVDATKLHKHFR--LKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhc-CCccccCCCCCccccccc--ccCCcCCEE
Confidence 67777778888998876455666655544 33222 33455444222 23333 335544332220 024789999
Q ss_pred EEcCCcc----------------chHHHHHHHHccCCCCcEEEEe
Q 024097 200 FVDAEKR----------------MYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 200 ~~d~~~~----------------~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+-+.+.. -...+|+.+.++|+++|.|.+.
T Consensus 80 iFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT 124 (166)
T PF10354_consen 80 IFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT 124 (166)
T ss_pred EEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9775521 1356888889999999999986
No 364
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.90 E-value=4.9 Score=37.25 Aligned_cols=105 Identities=10% Similarity=0.175 Sum_probs=57.4
Q ss_pred CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC------CC
Q 024097 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG------EA 193 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~------~~ 193 (272)
++|.=||.|. .+..+|..+. .+.+|+++|++++.++..+ .+. +.+...+..+.+......+ ..
T Consensus 4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~-----~g~---~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTIN-----RGE---IHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHH-----CCC---CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 4677777764 3333333332 2468999999998776422 121 2222222222222111100 01
Q ss_pred CceEEEEEcCCc----------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 194 SSYDFAFVDAEK----------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 194 ~~fDlV~~d~~~----------~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
...|+||+..+. ......++.+.+.+++|.++|.......|.
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgt 125 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGA 125 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCH
Confidence 256899876553 234555677888899988887766655553
No 365
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=90.84 E-value=1.3 Score=33.88 Aligned_cols=95 Identities=13% Similarity=0.051 Sum_probs=47.5
Q ss_pred HHHHhhcCCCEEEEEcCccCHHH-HHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhC
Q 024097 112 AMLVQILGAQRCIEVGVYTGYSS-LAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 112 ~~l~~~~~~~~VLEiG~G~G~~~-~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 190 (272)
..++...+..+|+|+|.|.=... ..|.+. +..|+++|+++. ... . .+.++.-|..+--..+
T Consensus 6 ~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a~-~----g~~~v~DDif~P~l~i--- 67 (127)
T PF03686_consen 6 EYIARLNNYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KAP-E----GVNFVVDDIFNPNLEI--- 67 (127)
T ss_dssp HHHHHHS-SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S----------------STTEE---SSS--HHH---
T ss_pred HHHHHhCCCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------ccc-c----CcceeeecccCCCHHH---
Confidence 33444556679999999875544 344443 479999999986 111 2 3667777776622222
Q ss_pred CCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 191 GEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 191 ~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
-...|+|++--+.......+-.+.+. -|.-+++.
T Consensus 68 --Y~~a~lIYSiRPP~El~~~il~lA~~--v~adlii~ 101 (127)
T PF03686_consen 68 --YEGADLIYSIRPPPELQPPILELAKK--VGADLIIR 101 (127)
T ss_dssp --HTTEEEEEEES--TTSHHHHHHHHHH--HT-EEEEE
T ss_pred --hcCCcEEEEeCCChHHhHHHHHHHHH--hCCCEEEE
Confidence 15789999876655555555555543 34455554
No 366
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=90.69 E-value=0.81 Score=32.65 Aligned_cols=85 Identities=15% Similarity=0.201 Sum_probs=52.3
Q ss_pred EEEEcCccCHHHHHHHHHCC-CC---cEEE-EEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 123 CIEVGVYTGYSSLAIALVLP-ES---GCLV-ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 123 VLEiG~G~G~~~~~la~~~~-~~---~~v~-~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
|.=||+ |..+..+++.+- .+ .+|+ +.+.+++..+...+.+ + +.+...+..+... ..|
T Consensus 2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~---------~ad 63 (96)
T PF03807_consen 2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ---------EAD 63 (96)
T ss_dssp EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH---------HTS
T ss_pred EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc---------cCC
Confidence 334554 666666665542 12 5888 5599998776555433 2 3444434545443 469
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIV 226 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lv 226 (272)
+||+........+.++.+ ..+.++..++
T Consensus 64 vvilav~p~~~~~v~~~i-~~~~~~~~vi 91 (96)
T PF03807_consen 64 VVILAVKPQQLPEVLSEI-PHLLKGKLVI 91 (96)
T ss_dssp EEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred EEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence 999998888888888888 6666666554
No 367
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=90.64 E-value=3.4 Score=37.28 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=59.7
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc--ChhHHHHHHHhCC
Q 024097 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNG 191 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~ 191 (272)
....++.+||=.|+| .|..+..+++..+ ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~--- 254 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT--- 254 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence 345577899988864 3445555666654 2379999999988777644 454211111110 1112222221
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 230 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~ 230 (272)
.+.+|+++-.... ...+..+.+.+++| |.+++-..
T Consensus 255 -~~~~d~vid~~G~---~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 255 -GGGVDYSFECTGN---IDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred -CCCCCEEEECCCC---hHHHHHHHHHhhcCCCEEEEECc
Confidence 2368977743222 23566677888996 99887544
No 368
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=90.59 E-value=4.2 Score=36.14 Aligned_cols=100 Identities=26% Similarity=0.347 Sum_probs=56.8
Q ss_pred hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
..++.+||=.|+| .|..+..+++..+ ..++++++.+++..+.+++ .+...-+.....+....+..+. ....
T Consensus 164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~---~~~~ 235 (345)
T cd08286 164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT---DGRG 235 (345)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh---CCCC
Confidence 3456777766653 2334444566543 2578999998877665553 3443222322223322222221 1346
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+|+|+-... ....++.+.+.|+++|.++.
T Consensus 236 ~d~vld~~g---~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 236 VDVVIEAVG---IPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCEEEECCC---CHHHHHHHHHhccCCcEEEE
Confidence 998874322 22357778899999999985
No 369
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=90.56 E-value=3.1 Score=37.05 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=60.0
Q ss_pred HHhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcCh---hHHHHHHH
Q 024097 114 LVQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLA---ADSLKALI 188 (272)
Q Consensus 114 l~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~ 188 (272)
.....++.+||-.|+|. |..+..+++..+ .+ |++++.+++..+.+++ .+...-+.....+. .+.+....
T Consensus 157 ~~~~~~g~~vlI~g~g~vG~~a~~lak~~G--~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 157 RAGVRPGDTVLVFGAGPIGLLTAAVAKAFG--ATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh
Confidence 34455678888777654 666677777754 45 8999888877766644 23321111111121 11122211
Q ss_pred hCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
....+|+|+-.... ...+....+.|+++|.++.-
T Consensus 231 ---~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 264 (343)
T cd05285 231 ---GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLV 264 (343)
T ss_pred ---CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 13459988854332 12567788899999998864
No 370
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.40 E-value=1.9 Score=38.31 Aligned_cols=109 Identities=15% Similarity=0.161 Sum_probs=65.9
Q ss_pred HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE--EcChhHHHHHHHhCC
Q 024097 115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALILNG 191 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~ 191 (272)
+...++.+|.-+|+|. |.....-++..+ .+++++||++++..+.|++ .|..+-+.-. .....+.+.+.-
T Consensus 188 Akv~~GstvAVfGLG~VGLav~~Gaka~G-AsrIIgvDiN~~Kf~~ak~----fGaTe~iNp~d~~~~i~evi~EmT--- 259 (375)
T KOG0022|consen 188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAG-ASRIIGVDINPDKFEKAKE----FGATEFINPKDLKKPIQEVIIEMT--- 259 (375)
T ss_pred cccCCCCEEEEEecchHHHHHHHhHHhcC-cccEEEEecCHHHHHHHHh----cCcceecChhhccccHHHHHHHHh---
Confidence 4456788999999875 444444555544 6799999999999998876 4544322222 112444444442
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCCCCCCc
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNVLWHGK 235 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~~~~g~ 235 (272)
++.+|+-|-... ..+.+.+++...++| |.-++-.+.-.|.
T Consensus 260 -dgGvDysfEc~G---~~~~m~~al~s~h~GwG~sv~iGv~~~~~ 300 (375)
T KOG0022|consen 260 -DGGVDYSFECIG---NVSTMRAALESCHKGWGKSVVIGVAAAGQ 300 (375)
T ss_pred -cCCceEEEEecC---CHHHHHHHHHHhhcCCCeEEEEEecCCCc
Confidence 467888883322 223455555556677 7666655554444
No 371
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=90.38 E-value=3.2 Score=37.07 Aligned_cols=104 Identities=13% Similarity=0.144 Sum_probs=61.0
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
....++.+||=.|+| .|..+..+++.. +. +|++++.+++..+.+++ .|...-+.....+..+.+.... .
T Consensus 168 ~~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~---~ 238 (351)
T cd08233 168 SGFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT---G 238 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh---C
Confidence 344567788888754 344555566664 35 89999999888777654 3432212222223333222221 1
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
...+|+|+-.... ...++.+.+.|+++|.++.-..
T Consensus 239 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 239 GGGVDVSFDCAGV---QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHhccCCCEEEEEcc
Confidence 2459998854332 2356778889999999887443
No 372
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=90.38 E-value=1.1 Score=38.35 Aligned_cols=114 Identities=21% Similarity=0.295 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH
Q 024097 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL 184 (272)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 184 (272)
+....++..+-..+.... +..=.|+=.++..+ +.+.-+.+.+|+.+.-.+..++++.. ..++++++.|..+.+
T Consensus 44 ~~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~l---lR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l 116 (245)
T PF04378_consen 44 PALQPYLDAVRALNPDGE-LRFYPGSPAIAARL---LREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGL 116 (245)
T ss_dssp GGGHHHHHHHHHHSSSSS---EEE-HHHHHHHH---S-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHH
T ss_pred HHHHHHHHHHHHhccCCC-cCcCCCCHHHHHHh---CCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhh
Confidence 344455555544443333 33333333333333 34467999999999999888887753 247999999999977
Q ss_pred HHHHhCCCCCceEEEEEcCC---ccchHHHHHHHHccCC--CCcEEEE
Q 024097 185 KALILNGEASSYDFAFVDAE---KRMYQEYFELLLQLIR--VGGIIVI 227 (272)
Q Consensus 185 ~~~~~~~~~~~fDlV~~d~~---~~~~~~~l~~~~~lLk--pgG~lvi 227 (272)
..+... ...=-+|+||.+ +.++....+.+.+.++ +.|++++
T Consensus 117 ~allPP--~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~i 162 (245)
T PF04378_consen 117 KALLPP--PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAI 162 (245)
T ss_dssp HHH-S---TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred hhhCCC--CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEE
Confidence 665432 234569999986 4455555555544444 5676654
No 373
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=90.26 E-value=1.7 Score=38.88 Aligned_cols=99 Identities=18% Similarity=0.101 Sum_probs=65.4
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC-ceEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS-SYDF 198 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~-~fDl 198 (272)
..+++|+-||.|...+.+..+- ---+.++|+++.+++.-+.|+.. -.++..|..+....-. .. .+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~----~~~~~Dv 70 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL----RKSDVDV 70 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc----cccCCCE
Confidence 3589999999999998888752 23589999999988877776632 3556666665433211 12 7898
Q ss_pred EEEcCCc--------c--------chHHHHHHHHccCCCCcEEEEeCCC
Q 024097 199 AFVDAEK--------R--------MYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 199 V~~d~~~--------~--------~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
++-..+. . ...-.+.++...++| -.+++.||-
T Consensus 71 ligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~ 118 (328)
T COG0270 71 LIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK 118 (328)
T ss_pred EEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence 8754331 1 111234445667788 889999885
No 374
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=90.24 E-value=2.6 Score=39.19 Aligned_cols=104 Identities=14% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHH--------HhCCCCCEEEEEcChhHHHHHHHhC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYE--------RAGVSHKVKIKHGLAADSLKALILN 190 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~--------~~~~~~~v~~~~~d~~~~~~~~~~~ 190 (272)
++++|-=||. |+.++.+|..+..+.+|+++|++++.++..++... +.....++.+. .+. +. .
T Consensus 5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t-~~~-~~---~--- 74 (425)
T PRK15182 5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFT-SEI-EK---I--- 74 (425)
T ss_pred CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEE-eCH-HH---H---
Confidence 3456766655 77777777777656789999999988776552110 00000111111 111 11 1
Q ss_pred CCCCceEEEEEcCCcc-------c---hHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 191 GEASSYDFAFVDAEKR-------M---YQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 191 ~~~~~fDlV~~d~~~~-------~---~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
...|++|+.-+.+ + .....+.+.+.|++|.++|......+|.
T Consensus 75 ---~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgt 126 (425)
T PRK15182 75 ---KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGC 126 (425)
T ss_pred ---cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcc
Confidence 4568888654321 2 2223456678899988888877776664
No 375
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.18 E-value=4.1 Score=33.75 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=48.6
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
...+|+=+|||. |......+...+ -++++.+|.+. ...+.+.+.++..+..-+++.+..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 98 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE 98 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence 567899999973 443333333333 36899999872 334455566655443323444443
Q ss_pred ChhH-HHHHHHhCCCCCceEEEEEcCCccchHHHHHHH
Q 024097 179 LAAD-SLKALILNGEASSYDFAFVDAEKRMYQEYFELL 215 (272)
Q Consensus 179 d~~~-~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~ 215 (272)
...+ .+..+ -..||+|+...+.......+.+.
T Consensus 99 ~i~~~~~~~~-----~~~~D~Vi~~~d~~~~r~~l~~~ 131 (202)
T TIGR02356 99 RVTAENLELL-----INNVDLVLDCTDNFATRYLINDA 131 (202)
T ss_pred cCCHHHHHHH-----HhCCCEEEECCCCHHHHHHHHHH
Confidence 3322 22222 25799998655433333334433
No 376
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.17 E-value=1.7 Score=40.02 Aligned_cols=102 Identities=14% Similarity=0.209 Sum_probs=54.6
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHH---hCC-----CCCEEEEEc-ChhHHHHHHHhCCC
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYER---AGV-----SHKVKIKHG-LAADSLKALILNGE 192 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~---~~~-----~~~v~~~~~-d~~~~~~~~~~~~~ 192 (272)
+|-=||+ |+.+..++..+..+.+|+++|++++.++..++.... .++ ..+.++... +..+.
T Consensus 2 kI~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~--------- 70 (388)
T PRK15057 2 KITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA--------- 70 (388)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh---------
Confidence 3444555 555555554443356899999999998776652110 000 011222211 11111
Q ss_pred CCceEEEEEcCCcc-----------chHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 193 ASSYDFAFVDAEKR-----------MYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 193 ~~~fDlV~~d~~~~-----------~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
....|+||+.-+.. .....++.+.+ +++|.++|......+|.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgt 123 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGF 123 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCch
Confidence 13568888754421 23344566666 68888887776666654
No 377
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.07 E-value=4.4 Score=36.51 Aligned_cols=103 Identities=16% Similarity=0.292 Sum_probs=59.7
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc--ChhHHHHHHHhCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNGE 192 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~ 192 (272)
...++.+||=+|+| .|..+..+++..+ ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~---- 251 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT---- 251 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh----
Confidence 34567899988874 3445556677654 2379999999888777644 344221111111 1122222221
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCC-cEEEEeCC
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVG-GIIVIDNV 230 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpg-G~lvi~d~ 230 (272)
...+|+||-.... ...+....+.++++ |.++.-..
T Consensus 252 ~~g~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 252 GGGVDYSFECTGN---ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCCCEEEECCCC---hHHHHHHHHhcccCCCEEEEEcC
Confidence 2468988843322 23567788889885 88876544
No 378
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.96 E-value=6.7 Score=32.57 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=61.3
Q ss_pred CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--CC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--EA 193 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~~ 193 (272)
++++||-.|++ |..+..+++.+ ..+.+|++++.+++..+...+.+... .++.++.+|..+. +..+.+.. .-
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45789988875 55666666655 34679999999987665554444322 2578888887642 11111100 02
Q ss_pred CceEEEEEcCCcc------c--------------hHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAEKR------M--------------YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~~~------~--------------~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+.+|.++...... . ....++.+.+.++++|.+++-
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ 134 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV 134 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence 4578887654311 0 112244555667778876654
No 379
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=89.79 E-value=3.1 Score=35.59 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=57.6
Q ss_pred HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097 115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
....++.+||-.|+|. |..+..+++..+ .+ |++++.+++..+.+++ .|..+.+... .+.. . .
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~----~g~~~~~~~~----~~~~--~----~ 156 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEA----LGPADPVAAD----TADE--I----G 156 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHH----cCCCcccccc----chhh--h----c
Confidence 3445678888888764 666677777764 45 9999999888776554 2311111111 0000 0 1
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
...+|+||..... ...++...+.|+++|.++.
T Consensus 157 ~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 157 GRGADVVIEASGS---PSALETALRLLRDRGRVVL 188 (277)
T ss_pred CCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence 3568988854332 2356777888999998875
No 380
>PRK06940 short chain dehydrogenase; Provisional
Probab=89.60 E-value=4.6 Score=34.87 Aligned_cols=80 Identities=20% Similarity=0.167 Sum_probs=50.5
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC-CCCCceE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN-GEASSYD 197 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-~~~~~fD 197 (272)
+.+|=.|+ |..+..+++.+..+.+|+.++.+++..+...+.++..+ .++.++.+|..+. +..+... .+.+.+|
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id 78 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT 78 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence 35565564 56888888888667899999998876665555554333 3577888887552 1222111 0125789
Q ss_pred EEEEcCC
Q 024097 198 FAFVDAE 204 (272)
Q Consensus 198 lV~~d~~ 204 (272)
.++..+.
T Consensus 79 ~li~nAG 85 (275)
T PRK06940 79 GLVHTAG 85 (275)
T ss_pred EEEECCC
Confidence 9987654
No 381
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=89.59 E-value=2.1 Score=36.96 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=47.3
Q ss_pred HHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCccchHHHHH
Q 024097 134 SLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEKRMYQEYFE 213 (272)
Q Consensus 134 ~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~ 213 (272)
++.+.+. +...+|+++|.+++..+.|++ .|..+. ...+ .+ .+ ..+|+|++..+......+++
T Consensus 2 A~aL~~~-g~~~~v~g~d~~~~~~~~a~~----~g~~~~---~~~~-~~---~~------~~~DlvvlavP~~~~~~~l~ 63 (258)
T PF02153_consen 2 ALALRKA-GPDVEVYGYDRDPETLEAALE----LGIIDE---ASTD-IE---AV------EDADLVVLAVPVSAIEDVLE 63 (258)
T ss_dssp HHHHHHT-TTTSEEEEE-SSHHHHHHHHH----TTSSSE---EESH-HH---HG------GCCSEEEE-S-HHHHHHHHH
T ss_pred hHHHHhC-CCCeEEEEEeCCHHHHHHHHH----CCCeee---ccCC-Hh---Hh------cCCCEEEEcCCHHHHHHHHH
Confidence 3444444 336799999999998877654 455432 1111 12 22 45799999988888888999
Q ss_pred HHHccCCCCcEEEEe
Q 024097 214 LLLQLIRVGGIIVID 228 (272)
Q Consensus 214 ~~~~lLkpgG~lvi~ 228 (272)
++.+.+++|+ +++|
T Consensus 64 ~~~~~~~~~~-iv~D 77 (258)
T PF02153_consen 64 EIAPYLKPGA-IVTD 77 (258)
T ss_dssp HHHCGS-TTS-EEEE
T ss_pred HhhhhcCCCc-EEEE
Confidence 9999888875 4444
No 382
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=89.57 E-value=2.6 Score=37.34 Aligned_cols=95 Identities=21% Similarity=0.274 Sum_probs=56.9
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
++.+||-.|+|. |..+..+++..+ -.++++++.+++..+.+++ .+.. .++..+-.. +..... ..+.+|
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G-~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~--~~~~vd 233 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAG-AAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA--DKGDFD 233 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc--cCCCcc
Confidence 678888888764 556666777653 1279999998887765544 2332 122111111 111111 124599
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+++-.... ...++.+.+.|+++|.++.
T Consensus 234 ~vld~~g~---~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 234 VVFEASGA---PAALASALRVVRPGGTVVQ 260 (339)
T ss_pred EEEECCCC---HHHHHHHHHHHhcCCEEEE
Confidence 98854332 2357778899999999885
No 383
>PRK08114 cystathionine beta-lyase; Provisional
Probab=89.42 E-value=17 Score=33.45 Aligned_cols=131 Identities=14% Similarity=0.188 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCC-hhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERD-ARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
-+|....+-..+.....+...+-+.+|++.....+...+.++.+|++.+.. .......++.+++.|.. ++++...-.
T Consensus 60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~--v~~vd~~d~ 137 (395)
T PRK08114 60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVT--TTWFDPLIG 137 (395)
T ss_pred CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcE--EEEECCCCH
Confidence 346555566666666677788889998888777666666667788776532 34455555666666652 555532212
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCccc--hHHHHHHHHccCC---CCcEEEEeCCCCCCcccCC
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIR---VGGIIVIDNVLWHGKVADQ 239 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~~--~~~~l~~~~~lLk---pgG~lvi~d~~~~g~~~~~ 239 (272)
+.+.... ...-.+|++...... ....++.+.++.+ +|-.+++||+...+...+|
T Consensus 138 ~~l~~~l----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~~~p 196 (395)
T PRK08114 138 ADIAKLI----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVLFKA 196 (395)
T ss_pred HHHHHhc----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccccCH
Confidence 2233222 234578888765211 1112333333333 4578889998877765554
No 384
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.38 E-value=4.8 Score=36.26 Aligned_cols=80 Identities=15% Similarity=0.143 Sum_probs=46.8
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh---------------------hHHHHHHHHHHHhCCCCCEEEE
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK 176 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~~~~~~v~~~ 176 (272)
...+|+=||||. |......+...+ -++++.+|.+. ...+.+++.+++.+..-+++.+
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 456899999973 333322222222 35899999874 2345566677666554456666
Q ss_pred EcChh-HHHHHHHhCCCCCceEEEEEcCC
Q 024097 177 HGLAA-DSLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 177 ~~d~~-~~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
..+.. +.+..+ -..+|+|+...+
T Consensus 102 ~~~~~~~~~~~~-----~~~~DlVid~~D 125 (338)
T PRK12475 102 VTDVTVEELEEL-----VKEVDLIIDATD 125 (338)
T ss_pred eccCCHHHHHHH-----hcCCCEEEEcCC
Confidence 65553 223333 256899886554
No 385
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.25 E-value=1.2 Score=39.36 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=53.5
Q ss_pred CEEEEEcCcc--CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC----CCEEEEEcChhHHHHHHHhCCCCC
Q 024097 121 QRCIEVGVYT--GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS----HKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 121 ~~VLEiG~G~--G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~----~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
++|+=+|+|. |+++..|++. +..|+.++.+++.++..++. .|+. ............ + ...+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~--~-----~~~~ 69 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET--A-----DAAE 69 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC--c-----cccc
Confidence 4788899873 4444555542 45799999987555444331 1221 000010000000 0 0135
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
.||+||+..-..+....++.+.+++.++..++.
T Consensus 70 ~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~ 102 (305)
T PRK05708 70 PIHRLLLACKAYDAEPAVASLAHRLAPGAELLL 102 (305)
T ss_pred ccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence 899999876555566778888889988886653
No 386
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=89.21 E-value=0.33 Score=40.62 Aligned_cols=88 Identities=13% Similarity=0.024 Sum_probs=62.5
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC-CC
Q 024097 115 VQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG-EA 193 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-~~ 193 (272)
+...++...+|.--|.|..+..+.+..+ ..++++.|.+|-+.+.|+...... ...++..+.+.+.....-+.+.+ .+
T Consensus 39 lspv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s~el-~~~~l~a~Lg~Fs~~~~l~~~~gl~~ 116 (303)
T KOG2782|consen 39 LSPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHSDEL-MHPTLKAVLGNFSYIKSLIADTGLLD 116 (303)
T ss_pred cCCCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhhHhh-cchhHHHHHhhhHHHHHHHHHhCCCc
Confidence 3445778999999999999999999987 688999999999988887765422 22344445555544322223333 46
Q ss_pred CceEEEEEcCC
Q 024097 194 SSYDFAFVDAE 204 (272)
Q Consensus 194 ~~fDlV~~d~~ 204 (272)
..+|-|++|..
T Consensus 117 ~~vDGiLmDlG 127 (303)
T KOG2782|consen 117 VGVDGILMDLG 127 (303)
T ss_pred CCcceEEeecC
Confidence 78999998765
No 387
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.21 E-value=5.9 Score=35.76 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=54.8
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
.++++||-.|+| .|..+..+++.. +.++++++.+++....+ .+..|... .+...+. +.+... .+.+
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~---~~~~Ga~~--vi~~~~~-~~~~~~-----~~~~ 248 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEA---INRLGADS--FLVSTDP-EKMKAA-----IGTM 248 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhH---HHhCCCcE--EEcCCCH-HHHHhh-----cCCC
Confidence 467788888875 455666677765 46788888876543222 12244321 1111111 122222 1358
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
|+||-... ....++.+.+.|++||.++.-.
T Consensus 249 D~vid~~g---~~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 249 DYIIDTVS---AVHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred CEEEECCC---CHHHHHHHHHHhcCCcEEEEeC
Confidence 98884322 2235777889999999998643
No 388
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=89.13 E-value=7.7 Score=34.21 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=60.1
Q ss_pred HHhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCC
Q 024097 114 LVQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNG 191 (272)
Q Consensus 114 l~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~ 191 (272)
.....++.+||=.|+| .|..+..+++... +.++++++.+++..+.+++ .|...-+.... .+..+.+...
T Consensus 157 ~~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~---- 227 (338)
T PRK09422 157 VSGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK---- 227 (338)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh----
Confidence 3445567889888854 3445555666532 5689999999988777743 34421111110 1111222222
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+.+|.++.+... ...++.+.+.|+++|.++.-
T Consensus 228 -~~~~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~ 260 (338)
T PRK09422 228 -TGGAHAAVVTAVA---KAAFNQAVDAVRAGGRVVAV 260 (338)
T ss_pred -cCCCcEEEEeCCC---HHHHHHHHHhccCCCEEEEE
Confidence 1357877766432 24578889999999998863
No 389
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=89.09 E-value=4 Score=36.79 Aligned_cols=101 Identities=15% Similarity=0.206 Sum_probs=59.4
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
...++.+||-.|+| .|..+..+++..+ ..++++++.+++..+.+++ .+...-+.....+..+.+.... ..
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~ 253 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT----GG 253 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh----CC
Confidence 34567888888765 3556666777764 2369999999887766644 3432111111112222222221 24
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+|+|+-..... ..+..+.+.|+++|.++.-
T Consensus 254 ~~d~vld~~g~~---~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 254 GVDYALDTTGVP---AVIEQAVDALAPRGTLALV 284 (365)
T ss_pred CCcEEEECCCCc---HHHHHHHHHhccCCEEEEe
Confidence 689887543221 3567788889999998863
No 390
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=88.97 E-value=8.5 Score=35.36 Aligned_cols=131 Identities=16% Similarity=0.207 Sum_probs=77.8
Q ss_pred CCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeC-ChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 103 VSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACER-DARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 103 ~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~-s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
-+|....+-..+.....+..++=..+|.+..+..+...++++.+|+..+. -.......++.+...|+. +.++..+-.
T Consensus 53 gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~--v~~~d~~d~ 130 (386)
T PF01053_consen 53 GNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE--VTFVDPTDL 130 (386)
T ss_dssp C-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--EEEESTTSH
T ss_pred ccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--EEEeCchhH
Confidence 45666666667777777888888999888887777777776778877764 344455566666666643 555544223
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCC--cEEEEeCCCCCCcccCC
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVG--GIIVIDNVLWHGKVADQ 239 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpg--G~lvi~d~~~~g~~~~~ 239 (272)
+.+.... ....++||+..+.. .....++.+.++.+.. -.+++||..-.+...+|
T Consensus 131 ~~l~~~l----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~~~p 188 (386)
T PF01053_consen 131 EALEAAL----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYNQNP 188 (386)
T ss_dssp HHHHHHH----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTTC-G
T ss_pred HHHHhhc----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceeeecc
Confidence 3333332 35789999876522 2223355555555554 47778887755544444
No 391
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=88.97 E-value=3.1 Score=36.38 Aligned_cols=90 Identities=24% Similarity=0.269 Sum_probs=53.7
Q ss_pred CEEEEEcCccCHHHHHHHHHCC---CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
++|+=+|. |..+.++++.+. ....+++.|.+....+.+.+ .|..+ ...+... ... ....|
T Consensus 4 ~~v~IvG~--GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d----~~~~~~~-~~~------~~~aD 66 (279)
T COG0287 4 MKVGIVGL--GLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVID----ELTVAGL-AEA------AAEAD 66 (279)
T ss_pred cEEEEECC--chHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCccc----ccccchh-hhh------cccCC
Confidence 46777775 555555555443 23456788887766554432 33322 1111100 111 25689
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+||+..+.....++++++.+.|++|. ++.|
T Consensus 67 ~VivavPi~~~~~~l~~l~~~l~~g~-iv~D 96 (279)
T COG0287 67 LVIVAVPIEATEEVLKELAPHLKKGA-IVTD 96 (279)
T ss_pred EEEEeccHHHHHHHHHHhcccCCCCC-EEEe
Confidence 99999998888889999988888866 4444
No 392
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=88.91 E-value=8.3 Score=33.09 Aligned_cols=117 Identities=15% Similarity=0.168 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 102 QVSPDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 102 ~~~~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
.+.+....++..+-..+++.+ |..=+|+-..+..+.+. .-++..+|..|+-....+++|. + ..++++..+|..
T Consensus 72 ~lpa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~--~-d~~vrv~~~DG~ 144 (279)
T COG2961 72 DLPAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA--G-DRRVRVLRGDGF 144 (279)
T ss_pred CchHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC--C-CcceEEEecCcH
Confidence 456677777777766666655 77778877776666653 5599999999999998888885 2 347999999988
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCc---cchHHHHHHHHccCC--CCcEEEE
Q 024097 182 DSLKALILNGEASSYDFAFVDAEK---RMYQEYFELLLQLIR--VGGIIVI 227 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~---~~~~~~l~~~~~lLk--pgG~lvi 227 (272)
..+...+.. .+.=-+|++|.+. .+|....+.+.+.++ ++|+.+|
T Consensus 145 ~~l~a~LPP--~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai 193 (279)
T COG2961 145 LALKAHLPP--KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI 193 (279)
T ss_pred HHHhhhCCC--CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 766544322 2445799999883 345444444443333 4555554
No 393
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.67 E-value=5.6 Score=33.54 Aligned_cols=90 Identities=13% Similarity=0.111 Sum_probs=49.6
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCC-------------------hhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERD-------------------ARSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s-------------------~~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
...+|+=+||| .|......+...+ -++++.+|.+ ....+.+++++++.+..-+++.+..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~ 98 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE 98 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence 45689999997 3443333333334 4678888543 3345666777766654434666554
Q ss_pred Chh-HHHHHHHhCCCCCceEEEEEcCCccchHHHHHH
Q 024097 179 LAA-DSLKALILNGEASSYDFAFVDAEKRMYQEYFEL 214 (272)
Q Consensus 179 d~~-~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~ 214 (272)
... +....+ -..+|+|+...+.......+.+
T Consensus 99 ~i~~~~~~~~-----~~~~DvVi~~~d~~~~r~~l~~ 130 (228)
T cd00757 99 RLDAENAEEL-----IAGYDLVLDCTDNFATRYLIND 130 (228)
T ss_pred eeCHHHHHHH-----HhCCCEEEEcCCCHHHHHHHHH
Confidence 442 222333 2469999976553333333443
No 394
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=88.64 E-value=5.5 Score=34.41 Aligned_cols=99 Identities=16% Similarity=0.181 Sum_probs=66.1
Q ss_pred hhcCCCEEEEE--cCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 116 QILGAQRCIEV--GVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEi--G~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
+..++..||-- ..|.|.....+++.. +.+++++--+.+..++|++ +|..+-|.....|..+....+. ..
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~ake----nG~~h~I~y~~eD~v~~V~kiT---ng 213 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKE----NGAEHPIDYSTEDYVDEVKKIT---NG 213 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHh----cCCcceeeccchhHHHHHHhcc---CC
Confidence 44567777654 345666666777765 4788888888888777766 5666667777666666554431 23
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
...|.++-.-.+. .++.-+..||++|.+|-
T Consensus 214 KGVd~vyDsvG~d----t~~~sl~~Lk~~G~mVS 243 (336)
T KOG1197|consen 214 KGVDAVYDSVGKD----TFAKSLAALKPMGKMVS 243 (336)
T ss_pred CCceeeeccccch----hhHHHHHHhccCceEEE
Confidence 5688887443333 36667788999999985
No 395
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=88.58 E-value=6.1 Score=35.61 Aligned_cols=102 Identities=18% Similarity=0.272 Sum_probs=58.4
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc--ChhHHHHHHHhCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG--LAADSLKALILNGE 192 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~--d~~~~~~~~~~~~~ 192 (272)
...++.+||=.|+| .|..+..+++..+ ...|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~---- 250 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT---- 250 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh----
Confidence 44567888888764 3444455666654 2358899988887766643 344321222222 2222222221
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCC-CCcEEEEeC
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIR-VGGIIVIDN 229 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLk-pgG~lvi~d 229 (272)
.+.+|+|+-.... ...+..+.+.|+ ++|.++.-.
T Consensus 251 ~~~~d~vid~~g~---~~~~~~~~~~l~~~~G~~v~~g 285 (365)
T cd05279 251 DGGVDYAFEVIGS---ADTLKQALDATRLGGGTSVVVG 285 (365)
T ss_pred CCCCcEEEECCCC---HHHHHHHHHHhccCCCEEEEEe
Confidence 2468988843221 245677888899 999998643
No 396
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.55 E-value=2.3 Score=37.82 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=60.2
Q ss_pred cCCCEEEEEcC-ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGV-YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~-G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
.++++|--+|. |-|..+..+|++++ .+|+++|.+...-+.+ ++..|-+.-+.+. .| .+..... .+..
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea---~~~LGAd~fv~~~-~d-~d~~~~~-----~~~~ 247 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEA---IKSLGADVFVDST-ED-PDIMKAI-----MKTT 247 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHH---HHhcCcceeEEec-CC-HHHHHHH-----HHhh
Confidence 36778777774 47999999999985 8999999997544433 4445654322222 11 2333333 1344
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
|.++.... .-....++.+.++||++|.+|+-.+
T Consensus 248 dg~~~~v~-~~a~~~~~~~~~~lk~~Gt~V~vg~ 280 (360)
T KOG0023|consen 248 DGGIDTVS-NLAEHALEPLLGLLKVNGTLVLVGL 280 (360)
T ss_pred cCcceeee-eccccchHHHHHHhhcCCEEEEEeC
Confidence 44432111 0022346777889999999998543
No 397
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.17 E-value=3 Score=36.36 Aligned_cols=87 Identities=17% Similarity=0.108 Sum_probs=50.8
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
+|.=||+| ..+..++..+. .+.+|+++|.+++..+.+.+ .+. +.....+. + . -...|+||
T Consensus 2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~----~g~---~~~~~~~~-~---~------~~~aDlVi 62 (279)
T PRK07417 2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIE----RGL---VDEASTDL-S---L------LKDCDLVI 62 (279)
T ss_pred eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----CCC---cccccCCH-h---H------hcCCCEEE
Confidence 45667764 45444444432 24589999999887766543 222 11111111 1 1 14578998
Q ss_pred EcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 201 VDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 201 ~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+..+.....+.++.+.+.++++. ++.|
T Consensus 63 lavp~~~~~~~~~~l~~~l~~~~-ii~d 89 (279)
T PRK07417 63 LALPIGLLLPPSEQLIPALPPEA-IVTD 89 (279)
T ss_pred EcCCHHHHHHHHHHHHHhCCCCc-EEEe
Confidence 88776666677777777777764 4443
No 398
>PRK08655 prephenate dehydrogenase; Provisional
Probab=88.04 E-value=3.6 Score=38.40 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=47.1
Q ss_pred EEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
+|.=|| |.|..+..++..+.. +.+|+++|.+++..... ....+. .+ ..+..+. -...|+||
T Consensus 2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~---a~~~gv----~~-~~~~~e~---------~~~aDvVI 63 (437)
T PRK08655 2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEV---AKELGV----EY-ANDNIDA---------AKDADIVI 63 (437)
T ss_pred EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHHH---HHHcCC----ee-ccCHHHH---------hccCCEEE
Confidence 566676 346666666665432 45899999987654221 111232 11 1122111 13568888
Q ss_pred EcCCccchHHHHHHHHccCCCCcE
Q 024097 201 VDAEKRMYQEYFELLLQLIRVGGI 224 (272)
Q Consensus 201 ~d~~~~~~~~~l~~~~~lLkpgG~ 224 (272)
+..+.......++.+.+.+++|.+
T Consensus 64 lavp~~~~~~vl~~l~~~l~~~~i 87 (437)
T PRK08655 64 ISVPINVTEDVIKEVAPHVKEGSL 87 (437)
T ss_pred EecCHHHHHHHHHHHHhhCCCCCE
Confidence 776655556667777777776653
No 399
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.80 E-value=5.1 Score=37.25 Aligned_cols=96 Identities=19% Similarity=0.141 Sum_probs=57.5
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
.++|+=+|+ |..+..+++.+.. +..|+.+|.+++.++..++.. ..+.++.||+.+. ..+.. .+-..+|.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~-~~L~~-~~~~~a~~ 300 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQ-ELLEE-EGIDEADA 300 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCH-HHHHh-cCCccCCE
Confidence 567888777 7777777777643 568999999999877655532 1367899998653 11211 12467888
Q ss_pred EEEcCCccchHHHHHHHHccCCCCcEE
Q 024097 199 AFVDAEKRMYQEYFELLLQLIRVGGII 225 (272)
Q Consensus 199 V~~d~~~~~~~~~l~~~~~lLkpgG~l 225 (272)
|++........-....+.+.+.+.-++
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii 327 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVI 327 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEE
Confidence 887544222222233333445454333
No 400
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.55 E-value=5.8 Score=36.85 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=56.7
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
+|+-+|+ |..+..+++.+. .+..|+.+|.+++.++.+++. . .+.++.||+.+.. .+... +-..+|.|+
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~~~-~l~~~-~~~~a~~vi 70 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSSPD-VLREA-GAEDADLLI 70 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCCHH-HHHHc-CCCcCCEEE
Confidence 5676766 788888888764 356899999999876655431 1 3788889886521 11111 135788888
Q ss_pred EcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 201 VDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 201 ~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+..........+....+.+.|.-.+++
T Consensus 71 ~~~~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 71 AVTDSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred EecCChHHHHHHHHHHHHhcCCCeEEE
Confidence 765433333334344445534433333
No 401
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.55 E-value=6.5 Score=34.68 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=53.6
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.+++|+=||+|. |......++.+ +.+|+.+|.+++..+.++ ..+. ++. +. +.+... -..+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~--~~-~~l~~~-----l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPF--HL-SELAEE-----VGKID 212 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eee--cH-HHHHHH-----hCCCC
Confidence 578999999863 33333334433 469999999977544433 2332 222 11 222222 25789
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
+||...+.. -.-+...+.++||++ ++|-...+|.
T Consensus 213 iVI~t~p~~---~i~~~~l~~~~~g~v-IIDla~~pgg 246 (296)
T PRK08306 213 IIFNTIPAL---VLTKEVLSKMPPEAL-IIDLASKPGG 246 (296)
T ss_pred EEEECCChh---hhhHHHHHcCCCCcE-EEEEccCCCC
Confidence 999754321 233556677888764 5554444444
No 402
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=87.50 E-value=0.98 Score=33.48 Aligned_cols=33 Identities=9% Similarity=-0.035 Sum_probs=24.5
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCCh
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA 154 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~ 154 (272)
+....+|||||.|...--|.+. +.+=.|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence 4557999999999887766652 45668888743
No 403
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=87.50 E-value=5.1 Score=35.48 Aligned_cols=98 Identities=17% Similarity=0.168 Sum_probs=57.5
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
....+.+||=.|+| .|..+..+++.. +.+++.++.+++..+.+++ .|...-+.....+..+.+... .
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~------~ 227 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL------G 227 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc------C
Confidence 44567789888854 344555566665 4689999999887766643 343211111111222222211 3
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+|+++.... ....++...+.|+++|.++.-
T Consensus 228 ~~d~vi~~~g---~~~~~~~~~~~l~~~G~~v~~ 258 (333)
T cd08296 228 GAKLILATAP---NAKAISALVGGLAPRGKLLIL 258 (333)
T ss_pred CCCEEEECCC---chHHHHHHHHHcccCCEEEEE
Confidence 5898874321 124577788899999998863
No 404
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=87.44 E-value=12 Score=33.26 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=56.3
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
.++.+||-.|+| .|..+..+++..+ .+ |++++.+++..+.+++ .+...-+.....+..+.+..+. +...
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G--~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~---~~~~ 230 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASG--AYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT---DGEG 230 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc---CCCC
Confidence 456777766654 3555566677653 54 8888887766655543 3432112222223333222221 1356
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|+|+-.... ...+..+.+.|+++|.++.-
T Consensus 231 ~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~ 260 (340)
T TIGR00692 231 VDVFLEMSGA---PKALEQGLQAVTPGGRVSLL 260 (340)
T ss_pred CCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence 8988864332 23567788889999988764
No 405
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.30 E-value=2 Score=41.82 Aligned_cols=95 Identities=19% Similarity=0.091 Sum_probs=57.4
Q ss_pred CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
.+|+= ||.|..+..+++.+. .+.+++.+|.|++.++.+++ .| ..++.||+.+. +...+.+-++.|.+
T Consensus 401 ~~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~--~~L~~agi~~A~~v 468 (601)
T PRK03659 401 PQVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQL--ELLRAAGAEKAEAI 468 (601)
T ss_pred CCEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCH--HHHHhcCCccCCEE
Confidence 35665 455777777776653 34689999999998887654 23 57899998762 22222223577888
Q ss_pred EEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 200 FVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
++..+........-...+.+.|...++.
T Consensus 469 v~~~~d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 469 VITCNEPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred EEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence 7654433222223233445667766665
No 406
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.26 E-value=7.7 Score=33.87 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=53.6
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHh--------CCC---------CCEEEEEcChhHH
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERA--------GVS---------HKVKIKHGLAADS 183 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------~~~---------~~v~~~~~d~~~~ 183 (272)
++|.=||+|.=..++...-.. .+.+|+.+|.+++.++.+++.+++. ... .++++. .|..+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a 81 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEA 81 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHH
Confidence 467778886433333322221 2568999999999888877654321 110 123322 222211
Q ss_pred HHHHHhCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCCcEEEE
Q 024097 184 LKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpgG~lvi 227 (272)
-...|+||...+.. ....+++.+.+.++++.+|+.
T Consensus 82 ---------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 82 ---------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred ---------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 14568888765522 345667777777777665543
No 407
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.18 E-value=8 Score=29.07 Aligned_cols=88 Identities=9% Similarity=0.016 Sum_probs=53.9
Q ss_pred HHHhhcCCCEEEEEcCccCH-HHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097 113 MLVQILGAQRCIEVGVYTGY-SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (272)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~-~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 191 (272)
.++......+|+|+|.|.=. .+..++++ +..++++|+++. ..+ .-++++.-|..+---.+
T Consensus 7 ~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~----------~a~--~g~~~v~DDitnP~~~i---- 67 (129)
T COG1255 7 YIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK----------TAP--EGLRFVVDDITNPNISI---- 67 (129)
T ss_pred HHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc----------cCc--ccceEEEccCCCccHHH----
Confidence 34445566799999987543 33344443 468999999875 122 23788888876521111
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCC
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIR 220 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLk 220 (272)
-...|+|++--+.+.....+-.+.+.++
T Consensus 68 -Y~~A~lIYSiRpppEl~~~ildva~aVg 95 (129)
T COG1255 68 -YEGADLIYSIRPPPELQSAILDVAKAVG 95 (129)
T ss_pred -hhCccceeecCCCHHHHHHHHHHHHhhC
Confidence 2467999987665555555555555443
No 408
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=87.15 E-value=10 Score=33.60 Aligned_cols=101 Identities=23% Similarity=0.313 Sum_probs=58.6
Q ss_pred HhhcCCCEEEEEcCcc-CHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097 115 VQILGAQRCIEVGVYT-GYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~-G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
....++.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.+++ .+...-+...... .+.+.... .
T Consensus 155 ~~~~~~~~vlI~g~g~~g~~~~~lA~~~G--~~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~-~~~~~~~~---~ 224 (343)
T cd08236 155 AGITLGDTVVVIGAGTIGLLAIQWLKILG--AKRVIAVDIDDEKLAVARE----LGADDTINPKEED-VEKVRELT---E 224 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcCCHHHHHHHHH----cCCCEEecCcccc-HHHHHHHh---C
Confidence 3445677888888754 666677777754 44 9999888776655532 3432111111111 12222221 1
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
...+|+++-.... ...+..+.+.|+++|.++.-
T Consensus 225 ~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 257 (343)
T cd08236 225 GRGADLVIEAAGS---PATIEQALALARPGGKVVLV 257 (343)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 2459988854321 23567788899999998754
No 409
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.00 E-value=1.9 Score=38.29 Aligned_cols=34 Identities=12% Similarity=0.180 Sum_probs=25.7
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
..+|+||+........+.++.+..++++++.++.
T Consensus 71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence 6799999876655566677888888888887653
No 410
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=86.97 E-value=6.5 Score=35.37 Aligned_cols=99 Identities=23% Similarity=0.338 Sum_probs=56.1
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
.++.+||-.|+| .|..+..+++..+ .+ +++++.+++..+.+++ .+...-+.....+..+.+.... ....
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~---~~~~ 256 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT---GGRG 256 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh---CCCC
Confidence 456788766654 4555566676654 45 9999988877665543 3432111111112222222221 1356
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|+|+-..... ..++.+.+.|+++|.++.-
T Consensus 257 ~d~vld~vg~~---~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 257 VDVVVEALGKP---ETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred CCEEEEeCCCH---HHHHHHHHHHhcCCEEEEE
Confidence 99888432221 2567788899999998853
No 411
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.97 E-value=3.1 Score=36.39 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=50.4
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCC-----CCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS-----HKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
+|+=||+|.-...+. ..+. .+..|+.++. ++.++..++ .++. ....+ ........... ...
T Consensus 2 kI~IiG~G~iG~~~a--~~L~~~g~~V~~~~r-~~~~~~~~~----~g~~~~~~~~~~~~-~~~~~~~~~~~-----~~~ 68 (305)
T PRK12921 2 RIAVVGAGAVGGTFG--GRLLEAGRDVTFLVR-PKRAKALRE----RGLVIRSDHGDAVV-PGPVITDPEEL-----TGP 68 (305)
T ss_pred eEEEECCCHHHHHHH--HHHHHCCCceEEEec-HHHHHHHHh----CCeEEEeCCCeEEe-cceeecCHHHc-----cCC
Confidence 577788875443333 2221 1457999988 655544332 2321 00111 00011111111 267
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEE
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIV 226 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lv 226 (272)
+|+||+..........++.+.+.+.++.+++
T Consensus 69 ~d~vilavk~~~~~~~~~~l~~~~~~~~~ii 99 (305)
T PRK12921 69 FDLVILAVKAYQLDAAIPDLKPLVGEDTVII 99 (305)
T ss_pred CCEEEEEecccCHHHHHHHHHhhcCCCCEEE
Confidence 8999988776677788888888888877665
No 412
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=86.72 E-value=2.4 Score=40.87 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=57.1
Q ss_pred CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
.+++=+| .|..+..+++.+. .+..++.+|.+++.++.+++ . ....+.||+.+. +..++.+-++.|.+
T Consensus 418 ~hiiI~G--~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~----g~~~i~GD~~~~--~~L~~a~i~~a~~v 485 (558)
T PRK10669 418 NHALLVG--YGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----R----GIRAVLGNAANE--EIMQLAHLDCARWL 485 (558)
T ss_pred CCEEEEC--CChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----C----CCeEEEcCCCCH--HHHHhcCccccCEE
Confidence 3555554 5778888888764 24589999999988776653 2 267899999762 22221123678877
Q ss_pred EEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 200 FVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
++..+.......+-.+.+...|...++.
T Consensus 486 iv~~~~~~~~~~iv~~~~~~~~~~~iia 513 (558)
T PRK10669 486 LLTIPNGYEAGEIVASAREKRPDIEIIA 513 (558)
T ss_pred EEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence 7653322222223233344567666665
No 413
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=86.58 E-value=11 Score=33.36 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=55.2
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 118 LGAQRCIEVGVYT-GYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
.++.+||-.|+|. |..+..+++..+ . +|++++.+++..+.+++ .+...-+.....+.. .+..+. ..+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~---~~~~ 231 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAG--ASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT---DGTG 231 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc---CCCC
Confidence 4567777767642 556666777654 4 78888777766655543 343211111111222 222221 1357
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|+||-.... ......+.+.|+++|.++.-
T Consensus 232 vd~vld~~g~---~~~~~~~~~~l~~~G~~v~~ 261 (341)
T cd05281 232 VDVVLEMSGN---PKAIEQGLKALTPGGRVSIL 261 (341)
T ss_pred CCEEEECCCC---HHHHHHHHHHhccCCEEEEE
Confidence 8988854322 23466778889999998863
No 414
>PRK10083 putative oxidoreductase; Provisional
Probab=86.51 E-value=8.5 Score=33.97 Aligned_cols=101 Identities=14% Similarity=0.106 Sum_probs=54.8
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHH-CCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097 115 VQILGAQRCIEVGVY-TGYSSLAIALV-LPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~~~~la~~-~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
....++.+||=.|+| .|..+..+++. .+ ...+++++.+++..+.+++ .|...-+.....+..+ .+...
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~---~~~~~-- 225 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPLGE---ALEEK-- 225 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHH---HHhcC--
Confidence 344567789888854 23334445553 23 2358889998887776654 3442111221112222 22111
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
...+|+||-.... ...+....+.|+++|.++.-
T Consensus 226 g~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 226 GIKPTLIIDAACH---PSILEEAVTLASPAARIVLM 258 (339)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 1235666643221 23567778899999999863
No 415
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=86.45 E-value=2.5 Score=41.36 Aligned_cols=95 Identities=17% Similarity=0.129 Sum_probs=55.6
Q ss_pred CEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFA 199 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV 199 (272)
.+|+=+|+ |..+..+++.+.. +-+++.+|.|++.++.+++ .| ..++.||+.+. +...+.+-+..|++
T Consensus 401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~--~~L~~agi~~A~~v 468 (621)
T PRK03562 401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRM--DLLESAGAAKAEVL 468 (621)
T ss_pred CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCH--HHHHhcCCCcCCEE
Confidence 57777666 5566666665432 4589999999998887754 23 57899998763 22222123578888
Q ss_pred EEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 200 FVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 200 ~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
++..+........-...+.+.|+-.++.
T Consensus 469 vv~~~d~~~n~~i~~~ar~~~p~~~iia 496 (621)
T PRK03562 469 INAIDDPQTSLQLVELVKEHFPHLQIIA 496 (621)
T ss_pred EEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 7654432222222223344456555544
No 416
>PRK08324 short chain dehydrogenase; Validated
Probab=86.25 E-value=8.4 Score=38.15 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=49.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA 193 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~ 193 (272)
.+++||-.|+ +|..+..+++.+ ..+.+|+.+|.+++..+.+.+.+... .++.++.+|..+. +....+. ...
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3478887775 455666666554 23579999999988776655544322 3588888886542 1111110 012
Q ss_pred CceEEEEEcCC
Q 024097 194 SSYDFAFVDAE 204 (272)
Q Consensus 194 ~~fDlV~~d~~ 204 (272)
+.+|+||....
T Consensus 497 g~iDvvI~~AG 507 (681)
T PRK08324 497 GGVDIVVSNAG 507 (681)
T ss_pred CCCCEEEECCC
Confidence 46899987654
No 417
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=86.12 E-value=6.4 Score=37.44 Aligned_cols=124 Identities=10% Similarity=0.086 Sum_probs=76.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhc--CCCEEEEEcCccCHHHHHHHHHCC---CCcEEEEEeCChhHHHHHHHHHHHhCCC-C
Q 024097 98 GSQMQVSPDQAQLLAMLVQIL--GAQRCIEVGVYTGYSSLAIALVLP---ESGCLVACERDARSLEVAKKYYERAGVS-H 171 (272)
Q Consensus 98 ~~~~~~~~~~~~~l~~l~~~~--~~~~VLEiG~G~G~~~~~la~~~~---~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~ 171 (272)
............++..++... +...|.|.-||+|.......+.+. ....+++-+..+.+...++.++.-.+.. +
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 334455566667776666543 447899999999998876554432 1246999999999999999886555543 2
Q ss_pred CEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCcc----------------------------chHHHHHHHHccCCCCc
Q 024097 172 KVKIKHGLAADSLKALILNGEASSYDFAFVDAEKR----------------------------MYQEYFELLLQLIRVGG 223 (272)
Q Consensus 172 ~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~~----------------------------~~~~~l~~~~~lLkpgG 223 (272)
......+|.+...... ...+||.|+.+.+.. .-..++..+...|++||
T Consensus 274 t~~~~~~dtl~~~d~~----~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG 349 (501)
T TIGR00497 274 NFNIINADTLTTKEWE----NENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEG 349 (501)
T ss_pred ccCcccCCcCCCcccc----ccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCC
Confidence 2344445544321111 124688877654310 11245666778899988
Q ss_pred EE
Q 024097 224 II 225 (272)
Q Consensus 224 ~l 225 (272)
..
T Consensus 350 ~~ 351 (501)
T TIGR00497 350 TA 351 (501)
T ss_pred eE
Confidence 63
No 418
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=86.08 E-value=4.3 Score=35.60 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=48.2
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCc
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASS 195 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~ 195 (272)
++++||-.| |+|..+..+++.+- .+.+|++++.++.............+...+++++.+|..+. +.... ..
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-----~~ 76 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVV-----DG 76 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHH-----cC
Confidence 346788776 47888888887763 34588888877654322222211112234689999998752 22221 35
Q ss_pred eEEEEEcC
Q 024097 196 YDFAFVDA 203 (272)
Q Consensus 196 fDlV~~d~ 203 (272)
+|.||..+
T Consensus 77 ~d~Vih~A 84 (322)
T PLN02662 77 CEGVFHTA 84 (322)
T ss_pred CCEEEEeC
Confidence 79888654
No 419
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=86.06 E-value=10 Score=33.41 Aligned_cols=97 Identities=12% Similarity=0.094 Sum_probs=53.7
Q ss_pred CCCEEEEE--cC-ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 119 GAQRCIEV--GV-YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 119 ~~~~VLEi--G~-G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
.+..++=+ |+ +.|..+..+++.. +.++++++.+++..+.+++ .|...-+.....+..+.+.... ....
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~---~~~~ 212 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI---AKLN 212 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh---CCCC
Confidence 34455544 33 3455666677765 4689999999887776654 3433212211122322222221 1246
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|+||-..... ......+.|++||.++.-
T Consensus 213 ~d~vid~~g~~----~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 213 ATIFFDAVGGG----LTGQILLAMPYGSTLYVY 241 (324)
T ss_pred CcEEEECCCcH----HHHHHHHhhCCCCEEEEE
Confidence 89888433221 234557788999998764
No 420
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=86.05 E-value=7.2 Score=35.46 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=56.9
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc---ChhHHHHHHHhCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG---LAADSLKALILNG 191 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~~~~~~~~ 191 (272)
...++.+||=.|+| .|..++.+++..+ ..+|++++.+++..+.+++ .|...-+..... +..+.+..+.
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~--- 271 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT--- 271 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc---
Confidence 34466788877764 2334455566553 2279999998876555544 454221111111 2222222221
Q ss_pred CCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 192 EASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 192 ~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
....+|+|+-... .....++.+.+.|+++|.++.-
T Consensus 272 ~g~gvDvvld~~g--~~~~~~~~~~~~l~~~G~~v~~ 306 (384)
T cd08265 272 KGWGADIQVEAAG--APPATIPQMEKSIAINGKIVYI 306 (384)
T ss_pred CCCCCCEEEECCC--CcHHHHHHHHHHHHcCCEEEEE
Confidence 1346898874322 2234577788889999999863
No 421
>PLN02256 arogenate dehydrogenase
Probab=86.05 E-value=9.9 Score=33.68 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=50.1
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
+.++|.=||+ |..+..++..+.. +.+|+++|.++. .+.+ ...|. .. ..+..+.. ....|
T Consensus 35 ~~~kI~IIG~--G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~--------~~~aD 94 (304)
T PLN02256 35 RKLKIGIVGF--GNFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC--------EEHPD 94 (304)
T ss_pred CCCEEEEEee--CHHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh--------hCCCC
Confidence 4567888886 4555555554422 358999999863 2222 22332 22 22222221 13468
Q ss_pred EEEEcCCccchHHHHHHH-HccCCCCcEEEEe
Q 024097 198 FAFVDAEKRMYQEYFELL-LQLIRVGGIIVID 228 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~-~~lLkpgG~lvi~ 228 (272)
+||+..+......+++.+ ...+++|. +++|
T Consensus 95 vVilavp~~~~~~vl~~l~~~~l~~~~-iviD 125 (304)
T PLN02256 95 VVLLCTSILSTEAVLRSLPLQRLKRST-LFVD 125 (304)
T ss_pred EEEEecCHHHHHHHHHhhhhhccCCCC-EEEe
Confidence 888877666666777776 45677765 4444
No 422
>PLN02494 adenosylhomocysteinase
Probab=85.96 E-value=5.5 Score=37.48 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=52.7
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..+++|+-+|+|. |......++.+ +.+|+.+|.++.....+.. .|. .+. +..+.+ ...
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal---------~~A 310 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV---------SEA 310 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH---------hhC
Confidence 3578999999873 43444444444 4689999999865433322 232 222 222222 356
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|+|+........ +....+..+|+||+|+.-
T Consensus 311 DVVI~tTGt~~v--I~~e~L~~MK~GAiLiNv 340 (477)
T PLN02494 311 DIFVTTTGNKDI--IMVDHMRKMKNNAIVCNI 340 (477)
T ss_pred CEEEECCCCccc--hHHHHHhcCCCCCEEEEc
Confidence 998874432221 346778899999988864
No 423
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=85.90 E-value=2 Score=36.43 Aligned_cols=75 Identities=19% Similarity=0.221 Sum_probs=40.8
Q ss_pred ccCHHHHH--HHHHC-CCCcEEEEEeCChhHH--HHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcC
Q 024097 129 YTGYSSLA--IALVL-PESGCLVACERDARSL--EVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDA 203 (272)
Q Consensus 129 G~G~~~~~--la~~~-~~~~~v~~iD~s~~~~--~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~ 203 (272)
|.|-.|.. ++..+ ..+.+|+-+|-+|..- +..+...+...+.+++.+...+-...+....+..+...||+|++|.
T Consensus 12 GaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~a~~~~~d~VlvDl 91 (231)
T PF07015_consen 12 GAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEAAEASGFDFVLVDL 91 (231)
T ss_pred CCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHHHHhcCCCEEEEeC
Confidence 45555444 44444 2467999999888542 3332222222445567776655444444332222234699999984
No 424
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.76 E-value=8.9 Score=33.75 Aligned_cols=83 Identities=19% Similarity=0.167 Sum_probs=55.8
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE 192 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~ 192 (272)
..++.||--|.|.|. +..++..+ ..++++...|++++..+...+.+++.| ++....+|..+. +....++ .+
T Consensus 36 v~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 467789988988885 44444333 236789999999999988888887765 577777776542 2222111 13
Q ss_pred CCceEEEEEcCC
Q 024097 193 ASSYDFAFVDAE 204 (272)
Q Consensus 193 ~~~fDlV~~d~~ 204 (272)
-+..|+++.++.
T Consensus 112 ~G~V~ILVNNAG 123 (300)
T KOG1201|consen 112 VGDVDILVNNAG 123 (300)
T ss_pred cCCceEEEeccc
Confidence 478898887654
No 425
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=85.61 E-value=0.62 Score=40.51 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=31.2
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHH
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLE 158 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~ 158 (272)
..+++|||+|||.|.-++.....- ...+...|.+.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~--~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKG--AVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhc--cceeeeEecchhhee
Confidence 467899999999999988877642 257888898887763
No 426
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=85.61 E-value=22 Score=32.77 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=55.8
Q ss_pred EEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHH------------HHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097 122 RCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKK------------YYERAGVSHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 122 ~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~------------~~~~~~~~~~v~~~~~d~~~~~~~~~ 188 (272)
+|--+|+|. |..+-.+...+ +..|+++|+++..++..++ .+++.....|+++- .|..+..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fT-td~~~a~---- 74 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFT-TDYEEAV---- 74 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEE-cCHHHHH----
Confidence 455566653 33222222222 3589999999998876543 22222222334433 1222211
Q ss_pred hCCCCCceEEEEEcCC----------ccchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 189 LNGEASSYDFAFVDAE----------KRMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~----------~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
...|++|+.-+ ........+.+.+.++..-++|+-...-.|.
T Consensus 75 -----~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt 126 (414)
T COG1004 75 -----KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGT 126 (414)
T ss_pred -----hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCc
Confidence 34588887533 1223455666778888878888876666664
No 427
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=85.47 E-value=7.7 Score=31.43 Aligned_cols=94 Identities=7% Similarity=0.086 Sum_probs=50.3
Q ss_pred HHHHHHHhhcC-CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCC--CCEEEEEcChhH--H
Q 024097 109 QLLAMLVQILG-AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVS--HKVKIKHGLAAD--S 183 (272)
Q Consensus 109 ~~l~~l~~~~~-~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~--~ 183 (272)
..+...+...+ ...|+.+|||.=.-...+....+ +.+++-+|. |+.++.-++.++..+.. .+.+++.+|..+ .
T Consensus 67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~ 144 (183)
T PF04072_consen 67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSW 144 (183)
T ss_dssp HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHH
T ss_pred HHHHHhhccCCCCcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhh
Confidence 34444444434 34899999987776666665433 456666666 55666666666654321 234578888874 3
Q ss_pred HHHHHhCC-CCCceEEEEEcCC
Q 024097 184 LKALILNG-EASSYDFAFVDAE 204 (272)
Q Consensus 184 ~~~~~~~~-~~~~fDlV~~d~~ 204 (272)
...+.+.+ +.+..-++++.+.
T Consensus 145 ~~~L~~~g~~~~~ptl~i~Egv 166 (183)
T PF04072_consen 145 IDALPKAGFDPDRPTLFIAEGV 166 (183)
T ss_dssp HHHHHHCTT-TTSEEEEEEESS
T ss_pred HHHHHHhCCCCCCCeEEEEcch
Confidence 44454433 3345556666554
No 428
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=85.47 E-value=2 Score=34.33 Aligned_cols=95 Identities=15% Similarity=0.181 Sum_probs=52.0
Q ss_pred CCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEE-EEEcChhHHHHHHHhCCCCCceEE
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVK-IKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
+++++-+|+..=.. -.+|-..+ ..++.++|.++--++ + ...+++. +...|........ .++||+
T Consensus 2 ~~~g~V~GS~~Pwv-Ev~aL~~G-A~~iltveyn~L~i~---~-----~~~dr~ssi~p~df~~~~~~y-----~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWV-EVMALQHG-AAKILTVEYNKLEIQ---E-----EFRDRLSSILPVDFAKNWQKY-----AGSFDF 66 (177)
T ss_pred CceEEEEecCCchh-hHHHHHcC-CceEEEEeecccccC---c-----ccccccccccHHHHHHHHHHh-----hccchh
Confidence 56788888875433 23333333 568999998763211 0 1112222 2222232222222 478998
Q ss_pred EEEcCC--------------ccchHHHHHHHHccCCCCcEEEEeC
Q 024097 199 AFVDAE--------------KRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 199 V~~d~~--------------~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
+.+-+. .......+.++..+|||||.+++.-
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 764321 1223455777889999999999853
No 429
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=85.27 E-value=7.4 Score=34.95 Aligned_cols=101 Identities=20% Similarity=0.340 Sum_probs=58.3
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCc-EEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESG-CLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
...++.+||-.|+| .|..+..+++..+ . +|++++.+++..+.+++ .+...-+.....+....+..+. ..
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G--~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~---~~ 249 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAG--ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLT---DG 249 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHc---CC
Confidence 34566788888764 4556666777654 4 49999988877665532 3432111111112222222221 13
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+|+++-.... ...+..+.+.|+++|.++.-
T Consensus 250 ~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 250 RGADYAFEAVGR---AATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred CCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEEE
Confidence 568987743321 23567788889999998863
No 430
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=85.13 E-value=33 Score=32.45 Aligned_cols=105 Identities=9% Similarity=0.069 Sum_probs=56.3
Q ss_pred CEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHH---HhCC--------CCCEEEEEcChhHHHHHHH
Q 024097 121 QRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYE---RAGV--------SHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~---~~~~--------~~~v~~~~~d~~~~~~~~~ 188 (272)
++|.-||+|..+.....+-+- +.+.+|+++|++++.++..++... ..++ ..++++. .|..+.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t-~~~~~~----- 75 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFS-TDVEKH----- 75 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEE-cCHHHH-----
Confidence 357778776544443322221 124679999999998876543210 0000 0011111 111111
Q ss_pred hCCCCCceEEEEEcCC--c-------------cchHHHHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 189 LNGEASSYDFAFVDAE--K-------------RMYQEYFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~--~-------------~~~~~~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
-...|++|+.-+ . .......+.+.+.|++|-++++..+...|.
T Consensus 76 ----i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gt 133 (473)
T PLN02353 76 ----VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKT 133 (473)
T ss_pred ----HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCh
Confidence 134678876422 1 124556677778899988888887777774
No 431
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.10 E-value=3 Score=35.09 Aligned_cols=61 Identities=25% Similarity=0.233 Sum_probs=46.6
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
....-|.|||.|.|+.+..+..+- -.++..+|+++.++.-.+-..+ +. ..+..++++|++.
T Consensus 49 ~~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~E-Aa-~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 49 LTNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSE-AA-PGKLRIHHGDVLR 109 (326)
T ss_pred cccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhh-cC-CcceEEeccccce
Confidence 345689999999999999998752 3589999999988876665443 32 2368888888875
No 432
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=85.04 E-value=1.8 Score=37.53 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=31.9
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC----CCcEEEEEeCChhHH
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLP----ESGCLVACERDARSL 157 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~----~~~~v~~iD~s~~~~ 157 (272)
+...++|+|||.|..+.+++..++ +...++.||......
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 456899999999999999999884 246899999965433
No 433
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=84.99 E-value=6.7 Score=35.93 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=60.2
Q ss_pred EEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhH--HHHHHHHHHHhCCCCC-EEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPESGCLVACERDARS--LEVAKKYYERAGVSHK-VKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~--~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
+|+-|+=..|..+.+++..-+ +.+ +... ....++|++.+++... +++. +..+.+ .+.+|+
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~-----~~~--~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~--------~~~~d~ 109 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKP-----YSI--GDSYISELATRENLRLNGIDESSVKFL--DSTADY--------PQQPGV 109 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCC-----Cee--ehHHHHHHHHHHHHHHcCCCcccceee--cccccc--------cCCCCE
Confidence 789999999999999995322 222 2222 2345678888887543 4444 222222 356999
Q ss_pred EEEcCCccc--hHHHHHHHHccCCCCcEEEEe
Q 024097 199 AFVDAEKRM--YQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 199 V~~d~~~~~--~~~~l~~~~~lLkpgG~lvi~ 228 (272)
|++--++.. ....+..+...|.||+.+++-
T Consensus 110 vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g 141 (378)
T PRK15001 110 VLIKVPKTLALLEQQLRALRKVVTSDTRIIAG 141 (378)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence 998777443 455677788999999998753
No 434
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=84.99 E-value=10 Score=34.47 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=54.9
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhH-HHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARS-LEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~-~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
++.+||-.|+| .|..+..+|+..+ .++++++.+++. .+.+ +..|... .+...+. +.+... .+.+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a----~~lGa~~--~i~~~~~-~~v~~~-----~~~~ 243 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAI----DRLGADS--FLVTTDS-QKMKEA-----VGTM 243 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHH----HhCCCcE--EEcCcCH-HHHHHh-----hCCC
Confidence 56788888875 4555566777654 689999887643 3333 2345421 1111121 222222 1358
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
|+||-.... ...+..+.+.+++||.++.-..
T Consensus 244 D~vid~~G~---~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 244 DFIIDTVSA---EHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred cEEEECCCc---HHHHHHHHHhhcCCCEEEEEcc
Confidence 988853322 2346777889999999986543
No 435
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=84.96 E-value=11 Score=32.78 Aligned_cols=100 Identities=18% Similarity=0.199 Sum_probs=56.4
Q ss_pred hhcCCCEEEEEcCc--cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 116 QILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~G--~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
...++.+||-.|.+ .|..+..++... +.+++.++.+++..+.+++ .+... .+...+ .+....+......
T Consensus 163 ~~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~--~~~~~~-~~~~~~~~~~~~~ 233 (342)
T cd08266 163 RLRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADY--VIDYRK-EDFVREVRELTGK 233 (342)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCe--EEecCC-hHHHHHHHHHhCC
Confidence 34567789888875 455555556554 4689999988876655532 23321 121111 1111111111113
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+|+++..... ..+..+.+.++++|.++.-
T Consensus 234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~ 264 (342)
T cd08266 234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC 264 (342)
T ss_pred CCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence 468988865432 2456677888999988764
No 436
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=84.95 E-value=9 Score=33.92 Aligned_cols=100 Identities=20% Similarity=0.288 Sum_probs=56.5
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
++++||-.|+|. |..+..+++..+ ..+|++++.+++..+.+++ .|...-+.....+..+.+..+ .....+|
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~---~~~~~~d 234 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAEL---GMTEGFD 234 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHh---cCCCCCC
Confidence 567777777653 556666777654 2268888877776655443 343211111111222222222 1135689
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
+||-.... ...++.+.+.|+++|.++.-.
T Consensus 235 ~v~d~~g~---~~~~~~~~~~l~~~G~~v~~g 263 (341)
T PRK05396 235 VGLEMSGA---PSAFRQMLDNMNHGGRIAMLG 263 (341)
T ss_pred EEEECCCC---HHHHHHHHHHHhcCCEEEEEe
Confidence 88753321 235677788999999988753
No 437
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=84.89 E-value=9.2 Score=27.59 Aligned_cols=70 Identities=17% Similarity=0.117 Sum_probs=43.8
Q ss_pred CEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDFAF 200 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~ 200 (272)
++|| +-||+|.+|-.++.. .++.+++.|+. +++...+..+.... ...+|+|+
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k-------------------~~~~~~~~gi~--~~v~a~~~~~~~~~------~~~~Dvil 55 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK-------------------MNKAAEEYGVP--VKIAAGSYGAAGEK------LDDADVVL 55 (95)
T ss_pred cEEE-EECCCchhHHHHHHH-------------------HHHHHHHCCCc--EEEEEecHHHHHhh------cCCCCEEE
Confidence 4677 669999887766654 24455667764 78887777664332 25689999
Q ss_pred EcCCccchHHHHHHHHccCCC
Q 024097 201 VDAEKRMYQEYFELLLQLIRV 221 (272)
Q Consensus 201 ~d~~~~~~~~~l~~~~~lLkp 221 (272)
+...... .++++.+...+
T Consensus 56 l~pqi~~---~~~~i~~~~~~ 73 (95)
T TIGR00853 56 LAPQVAY---MLPDLKKETDK 73 (95)
T ss_pred ECchHHH---HHHHHHHHhhh
Confidence 8665443 34444444444
No 438
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.89 E-value=12 Score=33.69 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=45.2
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh---------------------hHHHHHHHHHHHhCCCCCEEEE
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA---------------------RSLEVAKKYYERAGVSHKVKIK 176 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~---------------------~~~~~a~~~~~~~~~~~~v~~~ 176 (272)
...+|+=+|||. |......+...+ -++++.+|.+. ...+.+++.+++.+..-+++.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~ 101 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAI 101 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence 456899999973 333322222223 46899999863 2334555666655543345556
Q ss_pred EcChhH-HHHHHHhCCCCCceEEEEEcCC
Q 024097 177 HGLAAD-SLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 177 ~~d~~~-~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
..+... ....+ -..||+|+...+
T Consensus 102 ~~~~~~~~~~~~-----~~~~DlVid~~D 125 (339)
T PRK07688 102 VQDVTAEELEEL-----VTGVDLIIDATD 125 (339)
T ss_pred eccCCHHHHHHH-----HcCCCEEEEcCC
Confidence 555432 22233 257899886544
No 439
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.87 E-value=8.4 Score=35.64 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=52.5
Q ss_pred cCCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..+++|+-+|+|. |......++.+ +.+|+++|.++.....+.. .|. ++. +..+. + ...
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leea---l------~~a 251 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TMEEA---A------KIG 251 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHH---H------hcC
Confidence 4688999999974 44444455544 4799999999864333321 232 222 22221 1 346
Q ss_pred EEEEEcCCccchHHHHH-HHHccCCCCcEEEEe
Q 024097 197 DFAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID 228 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~-~~~~lLkpgG~lvi~ 228 (272)
|+||..... ...+. .....+|+|++++.-
T Consensus 252 DVVItaTG~---~~vI~~~~~~~mK~GailiN~ 281 (406)
T TIGR00936 252 DIFITATGN---KDVIRGEHFENMKDGAIVANI 281 (406)
T ss_pred CEEEECCCC---HHHHHHHHHhcCCCCcEEEEE
Confidence 988764432 33444 477889999988764
No 440
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=84.86 E-value=4.2 Score=35.03 Aligned_cols=90 Identities=18% Similarity=0.262 Sum_probs=50.3
Q ss_pred CCCEEEEEcCccCH----HHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 119 GAQRCIEVGVYTGY----SSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 119 ~~~~VLEiG~G~G~----~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
..++||-+|+|+-- -+.-+-+-+|.++.++-.|+.+- . ++--..+.+|.....+ +.
T Consensus 61 ~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~--------v-----SDa~~~~~~Dc~t~~~-------~~ 120 (299)
T PF06460_consen 61 HNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY--------V-----SDADQSIVGDCRTYMP-------PD 120 (299)
T ss_dssp TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B------SSSEEEES-GGGEEE-------SS
T ss_pred cCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh--------c-----cccCCceeccccccCC-------CC
Confidence 45799999998522 34556677888888899998642 1 2223567788766433 57
Q ss_pred ceEEEEEcCC-------------ccchHHH-HHHHHccCCCCcEEEEe
Q 024097 195 SYDFAFVDAE-------------KRMYQEY-FELLLQLIRVGGIIVID 228 (272)
Q Consensus 195 ~fDlV~~d~~-------------~~~~~~~-l~~~~~lLkpgG~lvi~ 228 (272)
+||+||.|.- +...-.+ ..-+...|+-||.+++-
T Consensus 121 k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiK 168 (299)
T PF06460_consen 121 KFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIK 168 (299)
T ss_dssp -EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEE
Confidence 9999999853 1222222 33345789999999984
No 441
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.65 E-value=9.9 Score=33.11 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=52.7
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCC---CCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVS---HKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
+|+=||+|. .+..++..+. .+.+|+.++.+++.++..++ .++. ...... ....+.... ...+|
T Consensus 2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~~~~~------~~~~d 68 (304)
T PRK06522 2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLEDGEITVP-VLAADDPAE------LGPQD 68 (304)
T ss_pred EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCcccCCceeec-ccCCCChhH------cCCCC
Confidence 577788864 3444443332 24589999997766554432 2321 111100 001111111 25789
Q ss_pred EEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 198 FAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+||+..........++.+.+.+.++..++.
T Consensus 69 ~vila~k~~~~~~~~~~l~~~l~~~~~iv~ 98 (304)
T PRK06522 69 LVILAVKAYQLPAALPSLAPLLGPDTPVLF 98 (304)
T ss_pred EEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence 999877766677788888888888765553
No 442
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=84.54 E-value=5.9 Score=34.88 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=48.2
Q ss_pred CCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCce
Q 024097 120 AQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSY 196 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~f 196 (272)
+++||-.| |+|..+..+++.+- .+.+|+++..++.............+...+++++.+|..+. +.... ..+
T Consensus 5 ~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~-----~~~ 78 (325)
T PLN02989 5 GKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI-----DGC 78 (325)
T ss_pred CCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH-----cCC
Confidence 56888777 67888888887653 35688887777654333322222123234688999998763 22321 357
Q ss_pred EEEEEcC
Q 024097 197 DFAFVDA 203 (272)
Q Consensus 197 DlV~~d~ 203 (272)
|.||..+
T Consensus 79 d~vih~A 85 (325)
T PLN02989 79 ETVFHTA 85 (325)
T ss_pred CEEEEeC
Confidence 9888654
No 443
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=84.45 E-value=14 Score=33.13 Aligned_cols=97 Identities=18% Similarity=0.205 Sum_probs=56.0
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
.++.+|+-+|+| .|..+..+++.. +.++++++.+++..+.+.+ ..|... .+...+. +.+... ...+
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~~--~i~~~~~-~~~~~~-----~~~~ 245 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGADD--YLVSSDA-AEMQEA-----ADSL 245 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCcE--EecCCCh-HHHHHh-----cCCC
Confidence 456788877764 455666677765 3678888887765444332 245421 1111111 112222 2358
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEEeCC
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNV 230 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~ 230 (272)
|+||-.... ...++.+.+.|++||.++.-..
T Consensus 246 D~vid~~g~---~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 246 DYIIDTVPV---FHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred cEEEECCCc---hHHHHHHHHHhccCCEEEEECC
Confidence 988744321 2356777889999999887543
No 444
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=84.42 E-value=0.84 Score=36.59 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=32.1
Q ss_pred hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHH
Q 024097 117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKK 162 (272)
Q Consensus 117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~ 162 (272)
..++.+|+=+|.| .|..+..++..++ .+++.+|..++..+..+.
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lG--a~v~~~d~~~~~~~~~~~ 61 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLG--AEVVVPDERPERLRQLES 61 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCC--CEEEeccCCHHHHHhhhc
Confidence 3467899999998 5777788888875 799999999876655443
No 445
>PRK08507 prephenate dehydrogenase; Validated
Probab=84.24 E-value=4.5 Score=35.08 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=51.0
Q ss_pred EEEEEcCccCHHHHHHHHHCCCC---cEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPES---GCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
+|.=||+ |..+..++..+... .+|+++|.+++..+.+++ .|... . ..+.. .. .+ .|+
T Consensus 2 ~I~iIG~--G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~----~g~~~---~-~~~~~----~~-----~~-aD~ 61 (275)
T PRK08507 2 KIGIIGL--GLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE----LGLVD---E-IVSFE----EL-----KK-CDV 61 (275)
T ss_pred EEEEEcc--CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH----CCCCc---c-cCCHH----HH-----hc-CCE
Confidence 4566776 55555555544322 379999999887665532 34321 1 11221 12 13 799
Q ss_pred EEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
||+..+.......++.+.+ +++|. ++++
T Consensus 62 Vilavp~~~~~~~~~~l~~-l~~~~-iv~d 89 (275)
T PRK08507 62 IFLAIPVDAIIEILPKLLD-IKENT-TIID 89 (275)
T ss_pred EEEeCcHHHHHHHHHHHhc-cCCCC-EEEE
Confidence 9988877777778888878 77776 4444
No 446
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.16 E-value=13 Score=32.65 Aligned_cols=100 Identities=16% Similarity=0.213 Sum_probs=58.7
Q ss_pred HhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcE-EEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097 115 VQILGAQRCIEVGVY-TGYSSLAIALVLPESGC-LVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
....++.+||-+|+| .|..+..+++..+ .+ ++.++.+++..+.+++ .+.. .++..+-.+..... ...
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G--~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~--~~~ 223 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNG--ASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQK--EDN 223 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHH--Hhc
Confidence 344567899988865 3556666677653 45 8899999887766543 3432 22222111111110 011
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
...+|+++..... ...+..+.+.|+++|.++.-
T Consensus 224 ~~~vd~v~~~~~~---~~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 224 PYGFDVVIEATGV---PKTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred CCCCcEEEECCCC---hHHHHHHHHHHhcCCEEEEE
Confidence 3579999854321 24677778889999998763
No 447
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=83.92 E-value=14 Score=30.57 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=56.9
Q ss_pred HHHHHhhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHh
Q 024097 111 LAMLVQILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALIL 189 (272)
Q Consensus 111 l~~l~~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 189 (272)
+........+++||-+|+. +|..+ ++.+.+..+|+.+|+.|.+-. -+.+.++|..+ +..+
T Consensus 36 i~~~~~~~E~~~vli~G~YltG~~~---a~~Ls~~~~vtv~Di~p~~r~---------~lp~~v~Fr~~-----~~~~-- 96 (254)
T COG4017 36 IRDFLEGEEFKEVLIFGVYLTGNYT---AQMLSKADKVTVVDIHPFMRG---------FLPNNVKFRNL-----LKFI-- 96 (254)
T ss_pred hhhhhcccCcceEEEEEeeehhHHH---HHHhcccceEEEecCCHHHHh---------cCCCCccHhhh-----cCCC--
Confidence 3333344567899999987 45444 444444679999999986432 13344665533 2222
Q ss_pred CCCCCceEEEEEcCCccc-hHHHHHHHHccCCCCcEEEEeCCCCCCcccCC
Q 024097 190 NGEASSYDFAFVDAEKRM-YQEYFELLLQLIRVGGIIVIDNVLWHGKVADQ 239 (272)
Q Consensus 190 ~~~~~~fDlV~~d~~~~~-~~~~l~~~~~lLkpgG~lvi~d~~~~g~~~~~ 239 (272)
.+.+|+|+--..... .+.+ .+.+.| +++++.|.. |.+.|+
T Consensus 97 ---~G~~DlivDlTGlGG~~Pe~----L~~fnp-~vfiVEdP~--gn~~D~ 137 (254)
T COG4017 97 ---RGEVDLIVDLTGLGGIEPEF----LAKFNP-KVFIVEDPK--GNVFDV 137 (254)
T ss_pred ---CCceeEEEeccccCCCCHHH----HhccCC-ceEEEECCC--CCCCcc
Confidence 578999884332222 2333 334566 556776654 334444
No 448
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=83.92 E-value=14 Score=31.67 Aligned_cols=100 Identities=16% Similarity=0.154 Sum_probs=59.2
Q ss_pred HhhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097 115 VQILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 115 ~~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
....++.+||=.|+ +.|..+..+++.. +.++++++.+++..+.+++ .+.. .++...-.+....+.....
T Consensus 132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~ 202 (320)
T cd05286 132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREITG 202 (320)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHcC
Confidence 34456788998884 4666777777775 4789999988877665533 3432 1222211122112211112
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
...+|+++-.... .....+.+.|+++|.++.
T Consensus 203 ~~~~d~vl~~~~~----~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 203 GRGVDVVYDGVGK----DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred CCCeeEEEECCCc----HhHHHHHHhhccCcEEEE
Confidence 3469998853322 246677888999998885
No 449
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.87 E-value=17 Score=31.41 Aligned_cols=96 Identities=22% Similarity=0.327 Sum_probs=59.5
Q ss_pred hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
..++.+||-.|+ +.|..+..+++.. +.+|+++..+++..+.+++ .|.. .+-....+..+.+..+ ..
T Consensus 140 ~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~i~~~-----~~ 207 (320)
T cd08243 140 LQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLKE----LGAD-EVVIDDGAIAEQLRAA-----PG 207 (320)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCc-EEEecCccHHHHHHHh-----CC
Confidence 456788988885 4677777778775 4789999988876655532 4542 1211112222222222 25
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+|+++-... . ..++.+.+.|+++|.++.-
T Consensus 208 ~~d~vl~~~~-~---~~~~~~~~~l~~~g~~v~~ 237 (320)
T cd08243 208 GFDKVLELVG-T---ATLKDSLRHLRPGGIVCMT 237 (320)
T ss_pred CceEEEECCC-h---HHHHHHHHHhccCCEEEEE
Confidence 6998884332 1 3577788999999998864
No 450
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.79 E-value=5.5 Score=32.15 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=52.9
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCce
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSY 196 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 196 (272)
..+++|.=||+| ..+..+++.+ +-+.+|+++|.+..... .....+ + ...+..+.+. ..
T Consensus 34 l~g~tvgIiG~G--~IG~~vA~~l~~fG~~V~~~d~~~~~~~----~~~~~~----~--~~~~l~ell~---------~a 92 (178)
T PF02826_consen 34 LRGKTVGIIGYG--RIGRAVARRLKAFGMRVIGYDRSPKPEE----GADEFG----V--EYVSLDELLA---------QA 92 (178)
T ss_dssp STTSEEEEESTS--HHHHHHHHHHHHTT-EEEEEESSCHHHH----HHHHTT----E--EESSHHHHHH---------H-
T ss_pred cCCCEEEEEEEc--CCcCeEeeeeecCCceeEEecccCChhh----hccccc----c--eeeehhhhcc---------hh
Confidence 467899999885 4454444433 12479999999987544 121112 3 2224444433 46
Q ss_pred EEEEEcCCc-cchHHH-HHHHHccCCCCcEEEEeCCCCCCcccCC
Q 024097 197 DFAFVDAEK-RMYQEY-FELLLQLIRVGGIIVIDNVLWHGKVADQ 239 (272)
Q Consensus 197 DlV~~d~~~-~~~~~~-l~~~~~lLkpgG~lvi~d~~~~g~~~~~ 239 (272)
|+|++..+. +....+ =+..+..+|+|.+||= +- .|.+.++
T Consensus 93 Div~~~~plt~~T~~li~~~~l~~mk~ga~lvN--~a-RG~~vde 134 (178)
T PF02826_consen 93 DIVSLHLPLTPETRGLINAEFLAKMKPGAVLVN--VA-RGELVDE 134 (178)
T ss_dssp SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEE--SS-SGGGB-H
T ss_pred hhhhhhhccccccceeeeeeeeeccccceEEEe--cc-chhhhhh
Confidence 999887652 222122 2445678898876552 33 4555543
No 451
>PRK09028 cystathionine beta-lyase; Provisional
Probab=83.78 E-value=27 Score=32.19 Aligned_cols=121 Identities=12% Similarity=0.137 Sum_probs=65.0
Q ss_pred HHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCCh-hHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCC
Q 024097 113 MLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNG 191 (272)
Q Consensus 113 ~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 191 (272)
.++....+..++=..+|+......+...+.++.+|+..+..- .....+...+...|. .+.++..+..+.+....
T Consensus 69 ~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~l~~~l--- 143 (394)
T PRK09028 69 AIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEGIRELI--- 143 (394)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHHHHHhc---
Confidence 333333445677677777666555554566677888887653 333444444444443 24444322223333322
Q ss_pred CCCceEEEEEcCC--ccchHHHHHHHHccCCC-CcEEEEeCCCCCCcccCC
Q 024097 192 EASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGKVADQ 239 (272)
Q Consensus 192 ~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkp-gG~lvi~d~~~~g~~~~~ 239 (272)
...-.+|++..+ .......++.+.++.+. |..+++|++...+....|
T Consensus 144 -~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~~P 193 (394)
T PRK09028 144 -RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINSRP 193 (394)
T ss_pred -CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccCCc
Confidence 234578888754 22223446666666554 566777888766644444
No 452
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=83.63 E-value=8.9 Score=35.69 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=51.0
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceE
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASSYD 197 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 197 (272)
.+++|+=+|+|. |......++.+ +.+|+.+|+++.....+.. .|. ++. +..+. + ..+|
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~----~G~----~v~--~l~ea---l------~~aD 269 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAM----DGF----RVM--TMEEA---A------ELGD 269 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHh----cCC----Eec--CHHHH---H------hCCC
Confidence 678999999873 33333344444 4699999999865433321 232 222 22222 1 3579
Q ss_pred EEEEcCCccchHHHHH-HHHccCCCCcEEEEe
Q 024097 198 FAFVDAEKRMYQEYFE-LLLQLIRVGGIIVID 228 (272)
Q Consensus 198 lV~~d~~~~~~~~~l~-~~~~lLkpgG~lvi~ 228 (272)
+||..... ...+. .....+|+|++++.-
T Consensus 270 VVI~aTG~---~~vI~~~~~~~mK~GailiNv 298 (425)
T PRK05476 270 IFVTATGN---KDVITAEHMEAMKDGAILANI 298 (425)
T ss_pred EEEECCCC---HHHHHHHHHhcCCCCCEEEEc
Confidence 88865432 23454 567889999977653
No 453
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.60 E-value=12 Score=34.15 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=45.3
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCC-------------------hhHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERD-------------------ARSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s-------------------~~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
...+|+=+||| .|......+...+ -++++.+|.+ ....+.+.+.+++.+..-+++....
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~ 212 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE 212 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 56689999997 3443333333333 4689999987 3445666666765543323444443
Q ss_pred ChhH-HHHHHHhCCCCCceEEEEEcCC
Q 024097 179 LAAD-SLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 179 d~~~-~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
...+ ....+ -..+|+|+...+
T Consensus 213 ~~~~~~~~~~-----~~~~D~Vv~~~d 234 (376)
T PRK08762 213 RVTSDNVEAL-----LQDVDVVVDGAD 234 (376)
T ss_pred cCChHHHHHH-----HhCCCEEEECCC
Confidence 3322 22222 146898886544
No 454
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=83.49 E-value=26 Score=31.60 Aligned_cols=106 Identities=16% Similarity=0.167 Sum_probs=59.8
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
...++.+||-.|+| .|..+..+++..+ ..+++++|.+++..+.+++ .|. ..+.....+..+.+..+ . ..
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~~----~g~-~~v~~~~~~~~~~i~~~---~-~~ 242 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRG-ASRVYVVDHVPERLDLAES----IGA-IPIDFSDGDPVEQILGL---E-PG 242 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCC-eEeccCcccHHHHHHHh---h-CC
Confidence 34567788777775 3555566666653 2378899998877666554 342 11111111222222222 1 24
Q ss_pred ceEEEEEcCCcc--------chHHHHHHHHccCCCCcEEEEeCCC
Q 024097 195 SYDFAFVDAEKR--------MYQEYFELLLQLIRVGGIIVIDNVL 231 (272)
Q Consensus 195 ~fDlV~~d~~~~--------~~~~~l~~~~~lLkpgG~lvi~d~~ 231 (272)
.+|+++-..... +....+..+.+.|+++|.++...+.
T Consensus 243 ~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~ 287 (375)
T cd08282 243 GVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVY 287 (375)
T ss_pred CCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEecc
Confidence 689887543322 1123477888999999999866554
No 455
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.39 E-value=18 Score=30.82 Aligned_cols=84 Identities=12% Similarity=0.006 Sum_probs=46.9
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CC
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GE 192 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~ 192 (272)
.++++|-.|+++ +..+..+++.+. .+.+|+.++.+....+..++..+... ..++.++..|..+. ...+.+. ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTSDEEITACFETIKEE 84 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCCHHHHHHHHHHHHHh
Confidence 467899999873 667777777653 46788888654322222222222221 23577888887652 1222111 01
Q ss_pred CCceEEEEEcC
Q 024097 193 ASSYDFAFVDA 203 (272)
Q Consensus 193 ~~~fDlV~~d~ 203 (272)
.+++|+++...
T Consensus 85 ~g~ld~lv~na 95 (257)
T PRK08594 85 VGVIHGVAHCI 95 (257)
T ss_pred CCCccEEEECc
Confidence 26789887643
No 456
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=83.36 E-value=2.9 Score=30.10 Aligned_cols=70 Identities=21% Similarity=0.329 Sum_probs=39.5
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeCCC---CCCcccCC--------cCCCHhhHHHHHHHHHhhhCCC
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDNVL---WHGKVADQ--------MVNDAKTISIRNFNKNLMEDER 261 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d~~---~~g~~~~~--------~~~~~~~~~~~~~~~~l~~~~~ 261 (272)
...||++++|....-.+..+..+...++-||++++---- |+.. .++ ...+....-++.|.+.+.++++
T Consensus 9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~-~d~~~~~~~~~~~~~~~~~F~~rf~~~L~~~~~ 87 (92)
T PF08351_consen 9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQL-PDPFSRRLSVPPYTDVTPRFIRRFIRSLQSDPG 87 (92)
T ss_dssp T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS--BGGGHHCC--SS-B--HHHHHHHHHHHCCSTT
T ss_pred CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhc-chHHHhccccCCCCcccHHHHHHHHHHHHHCcC
Confidence 467999999987777788899999999999999873222 2211 111 1112234467778888888887
Q ss_pred eE
Q 024097 262 VS 263 (272)
Q Consensus 262 ~~ 263 (272)
+.
T Consensus 88 i~ 89 (92)
T PF08351_consen 88 II 89 (92)
T ss_dssp S-
T ss_pred Cc
Confidence 64
No 457
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=83.27 E-value=31 Score=31.48 Aligned_cols=128 Identities=15% Similarity=0.179 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCChh-HHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDAR-SLEVAKKYYERAGVSHKVKIKHGLAADS 183 (272)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 183 (272)
|....+=..+........++=..+|++.....+...+.++.+|+..+..-. ....+....+..|. +++++..+..+.
T Consensus 50 Pt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi--~v~~~d~~~~e~ 127 (377)
T TIGR01324 50 LTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGV--DITYYDPLIGED 127 (377)
T ss_pred ccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCc--EEEEECCCCHHH
Confidence 444444444444445567776777777666665555666778887765432 22333333444443 244332211122
Q ss_pred HHHHHhCCCCCceEEEEEcCC--ccchHHHHHHHHccCCC-CcEEEEeCCCCCCcccC
Q 024097 184 LKALILNGEASSYDFAFVDAE--KRMYQEYFELLLQLIRV-GGIIVIDNVLWHGKVAD 238 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~--~~~~~~~l~~~~~lLkp-gG~lvi~d~~~~g~~~~ 238 (272)
+.... .....+|++..+ .......++.+.++.+. |..+++|++...|....
T Consensus 128 l~~~i----~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~ 181 (377)
T TIGR01324 128 IATLI----QPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK 181 (377)
T ss_pred HHHhc----CCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC
Confidence 33221 245678887654 22233445666655554 56777888876665433
No 458
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.17 E-value=1.8 Score=33.65 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=52.3
Q ss_pred EEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCC----C-CEEEEEcC-hhHHHHHHHhCCCCCce
Q 024097 124 IEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVS----H-KVKIKHGL-AADSLKALILNGEASSY 196 (272)
Q Consensus 124 LEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~----~-~v~~~~~d-~~~~~~~~~~~~~~~~f 196 (272)
+=+|+ |..+..+|..+ ..+.+|+.+...+ .++. ++..++. . ...+.... ....... ...|
T Consensus 2 ~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 68 (151)
T PF02558_consen 2 LIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEA----IKEQGLTITGPDGDETVQPPIVISAPSAD------AGPY 68 (151)
T ss_dssp EEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHH----HHHHCEEEEETTEEEEEEEEEEESSHGHH------HSTE
T ss_pred EEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHh----hhheeEEEEecccceecccccccCcchhc------cCCC
Confidence 34555 55665555554 2257899999877 4443 2223321 0 11111111 1111011 3789
Q ss_pred EEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 197 DFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 197 DlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
|+||+..-..+..+.++.+.+.+.++..+++
T Consensus 69 D~viv~vKa~~~~~~l~~l~~~~~~~t~iv~ 99 (151)
T PF02558_consen 69 DLVIVAVKAYQLEQALQSLKPYLDPNTTIVS 99 (151)
T ss_dssp SEEEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred cEEEEEecccchHHHHHHHhhccCCCcEEEE
Confidence 9999987766778889999999999976664
No 459
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=82.96 E-value=3 Score=35.82 Aligned_cols=106 Identities=18% Similarity=0.152 Sum_probs=67.9
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCCC-----------CcEEEEEeCChhHHHHHH-------------HHHH---------
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLPE-----------SGCLVACERDARSLEVAK-------------KYYE--------- 165 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~~-----------~~~v~~iD~s~~~~~~a~-------------~~~~--------- 165 (272)
+.-.|+|+|-|+|...+...+..+. .-++++++.+|....... +...
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 3447999999999988777665431 135788888774322111 1110
Q ss_pred ----HhCCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEEcCCc------cchHHHHHHHHccCCCCcEEEE
Q 024097 166 ----RAGVSHKVKIKHGLAADSLKALILNGEASSYDFAFVDAEK------RMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 166 ----~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~d~~~------~~~~~~l~~~~~lLkpgG~lvi 227 (272)
..| .-...+..||+.+.++..... .+.+|+.|.|+-. -+..+++..+.+..++||.+.-
T Consensus 138 ~r~~~~g-~~~l~l~~gd~~~~~p~~~~~--~~~~dAwflDgFsP~kNP~mW~~e~l~~~a~~~~~~~~l~t 206 (252)
T COG4121 138 AAAVRHG-LLLLGLVIGDAGDGIPPVPRR--RPGTDAWFLDGFRPVKNPEMWEDELLNLMARIPYRDPTLAT 206 (252)
T ss_pred HHhhhcc-hheeeeeeeehhhcCCccccc--ccCccEEecCCccccCChhhccHHHHHHHHhhcCCCCceec
Confidence 012 124677888888776654111 0179999998641 1356788999999999999875
No 460
>PRK08818 prephenate dehydrogenase; Provisional
Probab=82.91 E-value=5.7 Score=36.25 Aligned_cols=32 Identities=16% Similarity=0.002 Sum_probs=21.0
Q ss_pred CEEEEEcCccCHHHHHHHHHCC--CCcEEEEEeCC
Q 024097 121 QRCIEVGVYTGYSSLAIALVLP--ESGCLVACERD 153 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~--~~~~v~~iD~s 153 (272)
.+|.=||. +|..+-++++.+. .+.+|+++|.+
T Consensus 5 ~~I~IIGl-~GliGgslA~alk~~~~~~V~g~D~~ 38 (370)
T PRK08818 5 PVVGIVGS-AGAYGRWLARFLRTRMQLEVIGHDPA 38 (370)
T ss_pred CEEEEECC-CCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 47888884 3555555555543 25689999985
No 461
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=82.87 E-value=9.6 Score=29.07 Aligned_cols=89 Identities=13% Similarity=0.145 Sum_probs=51.4
Q ss_pred CCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEcC
Q 024097 120 AQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGL 179 (272)
Q Consensus 120 ~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d 179 (272)
..+|+=+||| .|......+...+ -++++-+|.+. ...+.+++.+.+....-+++.+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 3589999996 4443333332223 46888888542 2346677777776655567777776
Q ss_pred hh-HHHHHHHhCCCCCceEEEEEcCCccchHHHHHH
Q 024097 180 AA-DSLKALILNGEASSYDFAFVDAEKRMYQEYFEL 214 (272)
Q Consensus 180 ~~-~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~ 214 (272)
.. +....+. ..+|+||...+.......+.+
T Consensus 81 ~~~~~~~~~~-----~~~d~vi~~~d~~~~~~~l~~ 111 (135)
T PF00899_consen 81 IDEENIEELL-----KDYDIVIDCVDSLAARLLLNE 111 (135)
T ss_dssp CSHHHHHHHH-----HTSSEEEEESSSHHHHHHHHH
T ss_pred cccccccccc-----cCCCEEEEecCCHHHHHHHHH
Confidence 62 3334432 478999876554333333333
No 462
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=82.87 E-value=17 Score=30.35 Aligned_cols=95 Identities=19% Similarity=0.165 Sum_probs=51.8
Q ss_pred EEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHH-HhCCCC-CEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 122 RCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYE-RAGVSH-KVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~-~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
+|.=|| |+|..+..++..+.. +.+|+.++.+++..+...+... ..+... ...+...+..+. . ...|+
T Consensus 2 kI~IIG-G~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea---~------~~aDv 71 (219)
T TIGR01915 2 KIAVLG-GTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEA---A------KRADV 71 (219)
T ss_pred EEEEEc-CCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHH---H------hcCCE
Confidence 466676 345555555555422 3588889998877655443221 111100 112222222222 1 45799
Q ss_pred EEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 199 AFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 199 V~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
||+..........++.+...++. .++++
T Consensus 72 Vilavp~~~~~~~l~~l~~~l~~--~vvI~ 99 (219)
T TIGR01915 72 VILAVPWDHVLKTLESLRDELSG--KLVIS 99 (219)
T ss_pred EEEECCHHHHHHHHHHHHHhccC--CEEEE
Confidence 99987777677777777665643 55554
No 463
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=82.76 E-value=21 Score=30.71 Aligned_cols=100 Identities=18% Similarity=0.320 Sum_probs=57.8
Q ss_pred hhcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 116 QILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
...++.+|+-.|| +.|..+..+++.. +.+++.++.+++..+.+++ .+...-+.....+..+.+... ...
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~---~~~ 206 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKAL---TGG 206 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHH---cCC
Confidence 3446789998997 3555556666654 4689999998877665533 343211111111222222222 113
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+|+++..... ..+..+.+.++++|.++.-
T Consensus 207 ~~~d~v~~~~g~----~~~~~~~~~~~~~g~~v~~ 237 (323)
T cd08241 207 RGVDVVYDPVGG----DVFEASLRSLAWGGRLLVI 237 (323)
T ss_pred CCcEEEEECccH----HHHHHHHHhhccCCEEEEE
Confidence 468988753322 2456677888999988753
No 464
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=82.66 E-value=11 Score=31.83 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=46.8
Q ss_pred CEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHH-HHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCceEE
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKK-YYERAGVSHKVKIKHGLAADSLKALILNGEASSYDF 198 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDl 198 (272)
++++=+||| ..+..+|+.+.. +..|+.+|.+++.++.... .+ -...+++|+.+. ..+...+-..+|.
T Consensus 1 m~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~--~~L~~agi~~aD~ 69 (225)
T COG0569 1 MKIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDE--DVLEEAGIDDADA 69 (225)
T ss_pred CEEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCH--HHHHhcCCCcCCE
Confidence 356777775 566666666543 3589999999987655222 11 367888888762 1122223468999
Q ss_pred EEEcCCcc
Q 024097 199 AFVDAEKR 206 (272)
Q Consensus 199 V~~d~~~~ 206 (272)
++......
T Consensus 70 vva~t~~d 77 (225)
T COG0569 70 VVAATGND 77 (225)
T ss_pred EEEeeCCC
Confidence 98765543
No 465
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.63 E-value=20 Score=31.25 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=53.8
Q ss_pred CEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHh-------CC-C--------CCEEEEEcChhHH
Q 024097 121 QRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERA-------GV-S--------HKVKIKHGLAADS 183 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~-------~~-~--------~~v~~~~~d~~~~ 183 (272)
++|.=||+|.= +..++..+. .+.+|+.+|.+++.++.+.+.+.+. +. . .++++. .+.
T Consensus 5 ~kI~vIGaG~m--G~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~--- 78 (292)
T PRK07530 5 KKVGVIGAGQM--GNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL--- 78 (292)
T ss_pred CEEEEECCcHH--HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH---
Confidence 46777888643 333333321 2468999999999887765543321 21 0 123322 122
Q ss_pred HHHHHhCCCCCceEEEEEcCCc--cchHHHHHHHHccCCCCcEEE
Q 024097 184 LKALILNGEASSYDFAFVDAEK--RMYQEYFELLLQLIRVGGIIV 226 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~~--~~~~~~l~~~~~lLkpgG~lv 226 (272)
..+ ...|+|+...+. .....+++.+.+.++++.+|+
T Consensus 79 -~~~------~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 79 -EDL------ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -HHh------cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 122 467988876542 224466788888888887665
No 466
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.51 E-value=21 Score=30.35 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=45.4
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 119 GAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 119 ~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
...+|+=+||| .|......+.+.+ -++++.+|.+. ...+.+++++...+..-+++.+..
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~G-Vg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSG-VGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 45689999997 4554444333333 46888888653 223455666666554434555544
Q ss_pred Chh-HHHHHHHhCCCCCceEEEEEcCC
Q 024097 179 LAA-DSLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 179 d~~-~~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
... +....+. ...||+|+...+
T Consensus 89 ~i~~~~~~~l~----~~~~D~VvdaiD 111 (231)
T cd00755 89 FLTPDNSEDLL----GGDPDFVVDAID 111 (231)
T ss_pred ecCHhHHHHHh----cCCCCEEEEcCC
Confidence 333 1222221 246999886543
No 467
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.36 E-value=20 Score=31.58 Aligned_cols=101 Identities=21% Similarity=0.229 Sum_probs=60.5
Q ss_pred hhcCCCEEEEEcCc--cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCC
Q 024097 116 QILGAQRCIEVGVY--TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~G--~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~ 193 (272)
...++.+||=.|++ .|..+..+++..+ .+++.+..+++..+.+++ .+...-+.....+..+.+.... +.
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~---~~ 232 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVEAVKELT---GG 232 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHHHHHHHh---cC
Confidence 44567889888875 5667777888764 689999998876655532 3432111111112222222221 13
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+|+++.+.... ..+..+.+.++++|.++.-
T Consensus 233 ~~vd~vl~~~~~~---~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 233 GGAHAVVVTAVSA---AAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred CCCCEEEEcCCch---HHHHHHHHHhhcCCEEEEe
Confidence 5699888544322 2466778889999999864
No 468
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=82.28 E-value=4 Score=28.26 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=21.4
Q ss_pred cCCCEEEEEcCccCHH-HHHHHHHCCCCcEEEEEeCC
Q 024097 118 LGAQRCIEVGVYTGYS-SLAIALVLPESGCLVACERD 153 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~-~~~la~~~~~~~~v~~iD~s 153 (272)
..+++||-||+-+|+- +..++..+..++..+++-..
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 4578999999999973 33466665556777777554
No 469
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=82.26 E-value=17 Score=32.09 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=57.5
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEE-cChhHHHHHHHhCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKH-GLAADSLKALILNGEA 193 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~~~~ 193 (272)
...++.+||=.|+| .|..+..+++.. +.++++++.+++..+.+++ .|...-+.... .+....+..+ . .
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~---~-~ 231 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDL---T-G 231 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHH---h-C
Confidence 34466788888853 344555566654 4689999998887766643 35422112211 1222222222 1 1
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
+.+|++|..... ...+..+.+.|+++|.++.
T Consensus 232 ~~~d~vi~~~g~---~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 232 GGAHVSVDALGI---PETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred CCCCEEEEcCCC---HHHHHHHHHHhhcCCEEEE
Confidence 279988853221 2356678889999998875
No 470
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=82.24 E-value=15 Score=32.18 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=57.5
Q ss_pred hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
..++.+||=.|. +.|..+..+++.. +.++++++.++...+.+++. .+...-+.....+..+.+... . ..
T Consensus 143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~---~-~~ 213 (329)
T cd05288 143 PKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEA---A-PD 213 (329)
T ss_pred CCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHh---c-cC
Confidence 345678888874 3566667777765 46899999888766665443 233211121111222212221 1 24
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEE
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVI 227 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi 227 (272)
.+|+++-.... ..++.+.+.|+++|.++.
T Consensus 214 ~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 214 GIDVYFDNVGG----EILDAALTLLNKGGRIAL 242 (329)
T ss_pred CceEEEEcchH----HHHHHHHHhcCCCceEEE
Confidence 68988743221 357778888999998875
No 471
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=82.11 E-value=1.2 Score=41.41 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=60.6
Q ss_pred cCCCEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEc-ChhHHHHHHHhCCCCCc
Q 024097 118 LGAQRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDARSLEVAKKYYERAGVSHKVKIKHG-LAADSLKALILNGEASS 195 (272)
Q Consensus 118 ~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~~~~~~~ 195 (272)
..+..+.|+|.|.|.-.-.+....+. .-.++.||.+..|......+.+........ ++.. -..+ ..........
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~-~v~~~~~~r---~~~pi~~~~~ 274 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEP-IVRKLVFHR---QRLPIDIKNG 274 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCch-hccccchhc---ccCCCCcccc
Confidence 45678888887766433332222221 246999999999998888777641111111 1111 1111 1111112356
Q ss_pred eEEEEEcCC------ccchHH-HHHHHHccCCCCcEEEEeCCCCCCc
Q 024097 196 YDFAFVDAE------KRMYQE-YFELLLQLIRVGGIIVIDNVLWHGK 235 (272)
Q Consensus 196 fDlV~~d~~------~~~~~~-~l~~~~~lLkpgG~lvi~d~~~~g~ 235 (272)
||+|++.+. ...... .-....+..++|+.+|+ +++|.
T Consensus 275 yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi---Ie~g~ 318 (491)
T KOG2539|consen 275 YDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI---IEKGT 318 (491)
T ss_pred eeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE---EecCC
Confidence 999998653 111222 23344578899999987 45554
No 472
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=82.04 E-value=16 Score=33.29 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=22.6
Q ss_pred CEEEEEcCccCHHHHHHHHHCCC-CcEEEEEeCCh
Q 024097 121 QRCIEVGVYTGYSSLAIALVLPE-SGCLVACERDA 154 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~~~-~~~v~~iD~s~ 154 (272)
++|.-|| |.|..+..++..+.. +..|+++|.++
T Consensus 99 ~~I~IiG-G~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVG-GKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEc-CCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 5788887 456666666666532 45799999864
No 473
>PRK06914 short chain dehydrogenase; Provisional
Probab=82.01 E-value=31 Score=29.41 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=51.0
Q ss_pred CCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--H---HHHhCCCC
Q 024097 120 AQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--K---ALILNGEA 193 (272)
Q Consensus 120 ~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~---~~~~~~~~ 193 (272)
.+++|-.|+ +|..+..+++.+ ..+.+|++++.+++..+...+.....+...+++++.+|..+.. . ..... -
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~--~ 79 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKE--I 79 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHh--c
Confidence 457787774 555677766554 3457899999988776665555544444456888888886532 1 11111 2
Q ss_pred CceEEEEEcC
Q 024097 194 SSYDFAFVDA 203 (272)
Q Consensus 194 ~~fDlV~~d~ 203 (272)
++.|.|+..+
T Consensus 80 ~~id~vv~~a 89 (280)
T PRK06914 80 GRIDLLVNNA 89 (280)
T ss_pred CCeeEEEECC
Confidence 5689888654
No 474
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=82.00 E-value=43 Score=30.97 Aligned_cols=124 Identities=17% Similarity=0.183 Sum_probs=73.6
Q ss_pred HHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEe-CChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097 110 LLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACE-RDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 110 ~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD-~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 188 (272)
+-..+........++-.-+|....+..+...++.+.++++.+ .--.-..+.++...+.|.. ..++..+-.+.+....
T Consensus 82 le~~iaal~ga~~~l~fsSGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie--~~~vd~~~~~~~~~~i 159 (409)
T KOG0053|consen 82 LESGIAALEGAAHALLFSSGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGE--GDFVDVDDLKKILKAI 159 (409)
T ss_pred HHHHHHHHhCCceEEEecccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCce--eeeechhhHHHHHHhh
Confidence 333444445666788888888878888887788778887776 3345566677766666653 4555443333333221
Q ss_pred hCCCCCceEEEEEcCCccc--hHHHHHHHHccC-CCCcEEEEeCCCCCCcccCC
Q 024097 189 LNGEASSYDFAFVDAEKRM--YQEYFELLLQLI-RVGGIIVIDNVLWHGKVADQ 239 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~~~~--~~~~l~~~~~lL-kpgG~lvi~d~~~~g~~~~~ 239 (272)
.+..++||+..+... ....++.+.++- ++|-.+|+||..-++-..+|
T Consensus 160 ----~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~~~p 209 (409)
T KOG0053|consen 160 ----KENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYNQDP 209 (409)
T ss_pred ----ccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccccCh
Confidence 235899998765211 111233333333 56677778888766644444
No 475
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=81.97 E-value=16 Score=32.24 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=47.8
Q ss_pred EEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEcChh
Q 024097 122 RCIEVGVY-TGYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGLAA 181 (272)
Q Consensus 122 ~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~ 181 (272)
+||=+||| .|...+..+...+ -++++.+|.+. ...+.|.+.+++.+..-+++.+..+..
T Consensus 1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 47788886 3333333222233 46888888542 224556666666554445777766665
Q ss_pred HHHHHHHhCCCCCceEEEEEcCCccchHHHHHH
Q 024097 182 DSLKALILNGEASSYDFAFVDAEKRMYQEYFEL 214 (272)
Q Consensus 182 ~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~ 214 (272)
+....+ -.+||+|+...+....+.++..
T Consensus 80 ~~~~~f-----~~~fdvVi~alDn~~aR~~in~ 107 (291)
T cd01488 80 DKDEEF-----YRQFNIIICGLDSIEARRWING 107 (291)
T ss_pred chhHHH-----hcCCCEEEECCCCHHHHHHHHH
Confidence 543333 2689999875443333334443
No 476
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.82 E-value=18 Score=31.86 Aligned_cols=93 Identities=23% Similarity=0.242 Sum_probs=51.0
Q ss_pred CEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHh-CC--C--------CCEEEEEcChhHHHHHHH
Q 024097 121 QRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERA-GV--S--------HKVKIKHGLAADSLKALI 188 (272)
Q Consensus 121 ~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~-~~--~--------~~v~~~~~d~~~~~~~~~ 188 (272)
++|.=||+|. .+..++..+ ..+.+|+.+|.+++.++.+++.+... +. . .++++. .|..+.
T Consensus 5 ~~I~vIGaG~--mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~----- 76 (311)
T PRK06130 5 QNLAIIGAGT--MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAA----- 76 (311)
T ss_pred cEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHH-----
Confidence 4677788864 333333332 12458999999999888777643211 11 0 112211 122111
Q ss_pred hCCCCCceEEEEEcCCcc--chHHHHHHHHccCCCCcEE
Q 024097 189 LNGEASSYDFAFVDAEKR--MYQEYFELLLQLIRVGGII 225 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLkpgG~l 225 (272)
-...|+||...... ....+++.+.++++++.++
T Consensus 77 ----~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii 111 (311)
T PRK06130 77 ----VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIF 111 (311)
T ss_pred ----hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEE
Confidence 14579988765533 2456677777766665544
No 477
>PLN02702 L-idonate 5-dehydrogenase
Probab=81.70 E-value=19 Score=32.27 Aligned_cols=105 Identities=17% Similarity=0.202 Sum_probs=60.0
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEE--EcChhHHHHHHHhCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIK--HGLAADSLKALILNGE 192 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~--~~d~~~~~~~~~~~~~ 192 (272)
...++.+||-+|+| .|..+..+++..+ ...+++++.+++..+.+++ .+....+.+. ..+..+.+..+... .
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 251 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFG-APRIVIVDVDDERLSVAKQ----LGADEIVLVSTNIEDVESEVEEIQKA-M 251 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCCEEEecCcccccHHHHHHHHhhh-c
Confidence 34467788888764 3556666777654 2358999988776665544 3543222221 12222222222111 1
Q ss_pred CCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 193 ASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
...+|+|+-.... ...+..+.+.|+++|.++.-.
T Consensus 252 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 252 GGGIDVSFDCVGF---NKTMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCCCEEEECCCC---HHHHHHHHHHHhcCCEEEEEc
Confidence 2468988754332 235778888999999988643
No 478
>PRK06153 hypothetical protein; Provisional
Probab=81.51 E-value=30 Score=31.84 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=47.9
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCCh----------------------hHHHHHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDA----------------------RSLEVAKKYYERAGVSHK 172 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~----------------------~~~~~a~~~~~~~~~~~~ 172 (272)
......+|+-|||| +|...+..+.+.+ -++++.+|.+. ..++.+++.+.+.+. .
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~G-VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~--~ 248 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTP-VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR--G 248 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcC-CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC--e
Confidence 34466799999998 5665555555555 56888888651 233445566655443 3
Q ss_pred EEEEEcChhH-HHHHHHhCCCCCceEEEEEcCCcc
Q 024097 173 VKIKHGLAAD-SLKALILNGEASSYDFAFVDAEKR 206 (272)
Q Consensus 173 v~~~~~d~~~-~~~~~~~~~~~~~fDlV~~d~~~~ 206 (272)
+..+.....+ ....+ ..+|+||...+..
T Consensus 249 I~~~~~~I~~~n~~~L------~~~DiV~dcvDn~ 277 (393)
T PRK06153 249 IVPHPEYIDEDNVDEL------DGFTFVFVCVDKG 277 (393)
T ss_pred EEEEeecCCHHHHHHh------cCCCEEEEcCCCH
Confidence 5544433321 22222 5789999765533
No 479
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=81.51 E-value=21 Score=31.10 Aligned_cols=99 Identities=11% Similarity=0.108 Sum_probs=58.2
Q ss_pred hcCCCEEEEEcC--ccCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcC-hhHHHHHHHhCCCC
Q 024097 117 ILGAQRCIEVGV--YTGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGL-AADSLKALILNGEA 193 (272)
Q Consensus 117 ~~~~~~VLEiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~~~~~ 193 (272)
..++.+||=.|+ +.|..+..+++..+ .+++.+..+++..+.+++ .|...-+.....+ ..+.+... ...
T Consensus 138 ~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~---~~~ 208 (334)
T PTZ00354 138 VKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKL---TGE 208 (334)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHH---hCC
Confidence 345678888874 46777777787754 567778888877666643 3442111111111 22222222 113
Q ss_pred CceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 194 SSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 194 ~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
..+|+++-... ...+..+.+.|+++|.++.-
T Consensus 209 ~~~d~~i~~~~----~~~~~~~~~~l~~~g~~i~~ 239 (334)
T PTZ00354 209 KGVNLVLDCVG----GSYLSETAEVLAVDGKWIVY 239 (334)
T ss_pred CCceEEEECCc----hHHHHHHHHHhccCCeEEEE
Confidence 46899884332 24667788899999998863
No 480
>PRK09242 tropinone reductase; Provisional
Probab=81.49 E-value=14 Score=31.09 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=51.7
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA 193 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~ 193 (272)
.++++|-.|++. ..+..+++.+. .+.+|+.++.+++..+...+.+.......++.++.+|..+. +..+... ...
T Consensus 8 ~~k~~lItGa~~-gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASK-GIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 467888888744 45666665542 36789999998877766665554432234688888887642 1111110 012
Q ss_pred CceEEEEEcCC
Q 024097 194 SSYDFAFVDAE 204 (272)
Q Consensus 194 ~~fDlV~~d~~ 204 (272)
+.+|.++....
T Consensus 87 g~id~li~~ag 97 (257)
T PRK09242 87 DGLHILVNNAG 97 (257)
T ss_pred CCCCEEEECCC
Confidence 57899886653
No 481
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.44 E-value=32 Score=29.19 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=46.7
Q ss_pred CCCEEEEEcCc-cCHHHHHHHHHCC-CCcEEEEEeCCh--hHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--
Q 024097 119 GAQRCIEVGVY-TGYSSLAIALVLP-ESGCLVACERDA--RSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN-- 190 (272)
Q Consensus 119 ~~~~VLEiG~G-~G~~~~~la~~~~-~~~~v~~iD~s~--~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~-- 190 (272)
.++++|-.|+| ++..+..+++.+. .+.+|+.++.+. +..+...+.+ + .++.++..|..+. ...+.+.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---P--EPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---C--CCCcEEeCCCCCHHHHHHHHHHHH
Confidence 46789999985 5667777777653 357898888764 3333222222 2 2466777787542 2222111
Q ss_pred CCCCceEEEEEcC
Q 024097 191 GEASSYDFAFVDA 203 (272)
Q Consensus 191 ~~~~~fDlV~~d~ 203 (272)
...+.+|+++.++
T Consensus 81 ~~~g~iD~li~nA 93 (256)
T PRK07889 81 EHVDGLDGVVHSI 93 (256)
T ss_pred HHcCCCcEEEEcc
Confidence 0136789988654
No 482
>PRK07109 short chain dehydrogenase; Provisional
Probab=81.33 E-value=21 Score=31.80 Aligned_cols=83 Identities=20% Similarity=0.119 Sum_probs=52.2
Q ss_pred CCCEEEEEcCccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA 193 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~ 193 (272)
..++||-.|+ +|..+..+++.+ ..+.+|+.++.+++.++...+.++..+ .++.++.+|..+. +....+. ..-
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 4567887775 555677776655 346799999999887776666665544 3578888887552 1111110 012
Q ss_pred CceEEEEEcCC
Q 024097 194 SSYDFAFVDAE 204 (272)
Q Consensus 194 ~~fDlV~~d~~ 204 (272)
+++|++|....
T Consensus 84 g~iD~lInnAg 94 (334)
T PRK07109 84 GPIDTWVNNAM 94 (334)
T ss_pred CCCCEEEECCC
Confidence 57898886543
No 483
>PRK05854 short chain dehydrogenase; Provisional
Probab=81.27 E-value=15 Score=32.32 Aligned_cols=84 Identities=17% Similarity=0.084 Sum_probs=52.5
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHH--HHHHhC--CCC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSL--KALILN--GEA 193 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~--~~~ 193 (272)
.++++|-.|+. |..+..+++.+. .+.+|+.+..+++..+.+.+.+....-..++.++..|..+.. ..+.+. ...
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 46788877765 456777766553 467999999998877666655544322335888888876521 111111 013
Q ss_pred CceEEEEEcC
Q 024097 194 SSYDFAFVDA 203 (272)
Q Consensus 194 ~~fDlV~~d~ 203 (272)
+..|+++.++
T Consensus 92 ~~iD~li~nA 101 (313)
T PRK05854 92 RPIHLLINNA 101 (313)
T ss_pred CCccEEEECC
Confidence 5789988764
No 484
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=81.23 E-value=18 Score=30.80 Aligned_cols=87 Identities=14% Similarity=0.089 Sum_probs=46.3
Q ss_pred EEEEEcCccCHHHHHHHHHC--CCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 122 RCIEVGVYTGYSSLAIALVL--PESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~--~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
+||=+|+| ..+..+++.+ ..-++++.+|.+. ...+.+++++++.+..-+++.+..+.
T Consensus 1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i 78 (234)
T cd01484 1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV 78 (234)
T ss_pred CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence 46778875 3443433332 1146888888543 22345566666655444566666655
Q ss_pred h---HHHHHHHhCCCCCceEEEEEcCCccchHHHHHHH
Q 024097 181 A---DSLKALILNGEASSYDFAFVDAEKRMYQEYFELL 215 (272)
Q Consensus 181 ~---~~~~~~~~~~~~~~fDlV~~d~~~~~~~~~l~~~ 215 (272)
. +....+ -..||+|+...+....+.++...
T Consensus 79 ~~~~~~~~~f-----~~~~DvVi~a~Dn~~aR~~ln~~ 111 (234)
T cd01484 79 GPEQDFNDTF-----FEQFHIIVNALDNIIARRYVNGM 111 (234)
T ss_pred ChhhhchHHH-----HhCCCEEEECCCCHHHHHHHHHH
Confidence 2 212222 26799999765533334444444
No 485
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=81.20 E-value=6.9 Score=30.05 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=44.5
Q ss_pred HhhcCCCEEEEEcCccCHHHHHHHHHC--CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCC
Q 024097 115 VQILGAQRCIEVGVYTGYSSLAIALVL--PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGE 192 (272)
Q Consensus 115 ~~~~~~~~VLEiG~G~G~~~~~la~~~--~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~ 192 (272)
.....+++||=||+| ..+..++..+ ..-.+++.+..+.+..+...+.+ + ...+++...+-.. ..+
T Consensus 7 ~~~l~~~~vlviGaG--g~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~-~~~~~~~~~~~~~--~~~----- 73 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAG--GAARAVAAALAALGAKEITIVNRTPERAEALAEEF---G-GVNIEAIPLEDLE--EAL----- 73 (135)
T ss_dssp HSTGTTSEEEEESSS--HHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---T-GCSEEEEEGGGHC--HHH-----
T ss_pred cCCcCCCEEEEECCH--HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---C-ccccceeeHHHHH--HHH-----
Confidence 334578899999985 3444333332 11346999999877655444444 2 1236666433222 222
Q ss_pred CCceEEEEEcCCccc
Q 024097 193 ASSYDFAFVDAEKRM 207 (272)
Q Consensus 193 ~~~fDlV~~d~~~~~ 207 (272)
..+|+|+...+...
T Consensus 74 -~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 -QEADIVINATPSGM 87 (135)
T ss_dssp -HTESEEEE-SSTTS
T ss_pred -hhCCeEEEecCCCC
Confidence 57999997655443
No 486
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.16 E-value=19 Score=32.70 Aligned_cols=80 Identities=13% Similarity=0.028 Sum_probs=46.0
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEc
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHG 178 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~ 178 (272)
...+||=+|||. |......+...+ -++++.+|.+. ...+.+++.+++.+..-+++.+..
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~ 105 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR 105 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence 456999999974 433333332333 46888888764 345667777776655434555444
Q ss_pred ChhH-HHHHHHhCCCCCceEEEEEcCC
Q 024097 179 LAAD-SLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 179 d~~~-~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
.... ....+ -..||+|+...+
T Consensus 106 ~i~~~~~~~~-----~~~~DvVvd~~d 127 (355)
T PRK05597 106 RLTWSNALDE-----LRDADVILDGSD 127 (355)
T ss_pred ecCHHHHHHH-----HhCCCEEEECCC
Confidence 3322 11222 257998886654
No 487
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=81.10 E-value=21 Score=31.30 Aligned_cols=96 Identities=24% Similarity=0.186 Sum_probs=57.9
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
...++.+||-+|+| .|..+..+++.. +.+|++++.+++..+.+++ .+.. .++...-.+..... .+
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~-----~~ 224 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAM--GFETVAITRSPDKRELARK----LGAD---EVVDSGAELDEQAA-----AG 224 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----hCCc---EEeccCCcchHHhc-----cC
Confidence 34566788888886 666666677765 4689999999887766533 2322 11111111111111 24
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
.+|+++..... ......+.+.|+++|.++.-
T Consensus 225 ~~d~vi~~~~~---~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 225 GADVILVTVVS---GAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred CCCEEEECCCc---HHHHHHHHHhcccCCEEEEE
Confidence 68988853221 23567778899999988864
No 488
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=81.07 E-value=25 Score=27.77 Aligned_cols=62 Identities=27% Similarity=0.180 Sum_probs=43.9
Q ss_pred CccCHHHHHHHHHC-CCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCCCCCceEEEEEcCC
Q 024097 128 VYTGYSSLAIALVL-PESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 128 ~G~G~~~~~la~~~-~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~~~~~fDlV~~d~~ 204 (272)
.|+|..+..+++.+ ..+.+|+++-.+++..+. ..+++++.+|..+. +... -..+|.||....
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----------~~~~~~~~~d~~d~~~~~~a-----l~~~d~vi~~~~ 69 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRSPSKAED----------SPGVEIIQGDLFDPDSVKAA-----LKGADAVIHAAG 69 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----------CTTEEEEESCTTCHHHHHHH-----HTTSSEEEECCH
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCchhccc----------ccccccceeeehhhhhhhhh-----hhhcchhhhhhh
Confidence 36888888888775 345799999999875433 34699999999774 2222 146898887654
No 489
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=80.89 E-value=6.8 Score=36.74 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=56.0
Q ss_pred hhcCCCEEEEEcCccCHHHHHHHHHCCC-CcEEE------EEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHH
Q 024097 116 QILGAQRCIEVGVYTGYSSLAIALVLPE-SGCLV------ACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALI 188 (272)
Q Consensus 116 ~~~~~~~VLEiG~G~G~~~~~la~~~~~-~~~v~------~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 188 (272)
....+++|+-||||+ .+...|..+.. +.+|+ ++|.+....+.|.+ .|+. ..+..+.+
T Consensus 32 ~~LkgKtIaIIGyGS--qG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~----dGF~------v~~~~Ea~---- 95 (487)
T PRK05225 32 SYLKGKKIVIVGCGA--QGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE----NGFK------VGTYEELI---- 95 (487)
T ss_pred HHhCCCEEEEEccCH--HHHHHhCCCccccceeEEeccccccccccchHHHHHh----cCCc------cCCHHHHH----
Confidence 345778999999965 44433333321 23444 44554555444433 3441 23343333
Q ss_pred hCCCCCceEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 189 LNGEASSYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 189 ~~~~~~~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
...|+|++-.+......+.+.+.+.||||..|.+.
T Consensus 96 -----~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 96 -----PQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYS 130 (487)
T ss_pred -----HhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEec
Confidence 45799988766445666779999999999999984
No 490
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=80.85 E-value=4.1 Score=37.36 Aligned_cols=62 Identities=18% Similarity=0.237 Sum_probs=47.1
Q ss_pred CCCCCEEEEEcChhHHHHHHHhCCCCCceEEEEE-cCC----ccchHHHHHHHHccCCCCcEEEEeCCCCCC
Q 024097 168 GVSHKVKIKHGLAADSLKALILNGEASSYDFAFV-DAE----KRMYQEYFELLLQLIRVGGIIVIDNVLWHG 234 (272)
Q Consensus 168 ~~~~~v~~~~~d~~~~~~~~~~~~~~~~fDlV~~-d~~----~~~~~~~l~~~~~lLkpgG~lvi~d~~~~g 234 (272)
+. +++++++++..+.+... .++++|.+++ |+. .....+.++.+.+.++|||.+++-+.....
T Consensus 273 ~~-drv~i~t~si~~~L~~~----~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 273 RL-DRVRIHTDSIEEVLRRL----PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CC-CeEEEEeccHHHHHHhC----CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 44 68999999999987754 2589998764 432 445677788899999999999987666443
No 491
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=80.81 E-value=17 Score=31.99 Aligned_cols=100 Identities=21% Similarity=0.282 Sum_probs=55.5
Q ss_pred hcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCCc
Q 024097 117 ILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEASS 195 (272)
Q Consensus 117 ~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~ 195 (272)
..++.+||=.|+| .|..+..+++..+ ..+|++++.+++..+.+++ .+... +--...+..+.+..+. ....
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~i~~~~---~~~~ 235 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAER----LGADH-VLNASDDVVEEVRELT---GGRG 235 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHHH----hCCcE-EEcCCccHHHHHHHHh---CCCC
Confidence 3456788888854 2333344555543 2689999988876655532 45421 1111111112222221 1246
Q ss_pred eEEEEEcCCccchHHHHHHHHccCCCCcEEEEe
Q 024097 196 YDFAFVDAEKRMYQEYFELLLQLIRVGGIIVID 228 (272)
Q Consensus 196 fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~ 228 (272)
+|+|+-.... ...++.+.+.|+++|.++.-
T Consensus 236 ~dvvld~~g~---~~~~~~~~~~l~~~g~~i~~ 265 (340)
T cd05284 236 ADAVIDFVGS---DETLALAAKLLAKGGRYVIV 265 (340)
T ss_pred CCEEEEcCCC---HHHHHHHHHHhhcCCEEEEE
Confidence 9988853331 23577778889999998853
No 492
>PRK08328 hypothetical protein; Provisional
Probab=80.74 E-value=24 Score=29.82 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=43.1
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh--------------------hHHHHHHHHHHHhCCCCCEEEEE
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLPESGCLVACERDA--------------------RSLEVAKKYYERAGVSHKVKIKH 177 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~--------------------~~~~~a~~~~~~~~~~~~v~~~~ 177 (272)
...+|+=+|||. |......+...+ -++++.+|.+. ...+.++++++..+..-+++...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~ 104 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV 104 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence 456899999983 444444333334 46888888542 12334445555544433455444
Q ss_pred cChhH-HHHHHHhCCCCCceEEEEEcCC
Q 024097 178 GLAAD-SLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 178 ~d~~~-~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
+...+ .+..+ -..+|+|+...+
T Consensus 105 ~~~~~~~~~~~-----l~~~D~Vid~~d 127 (231)
T PRK08328 105 GRLSEENIDEV-----LKGVDVIVDCLD 127 (231)
T ss_pred ccCCHHHHHHH-----HhcCCEEEECCC
Confidence 43322 22222 257899986544
No 493
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=80.56 E-value=25 Score=31.20 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=55.9
Q ss_pred hhcCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHhCCCCC
Q 024097 116 QILGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADSLKALILNGEAS 194 (272)
Q Consensus 116 ~~~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 194 (272)
...++.+||=.|+| .|..+..+++..+ ...+++++.+++..+.+++ .|...-+.....+..+.+..+. ...
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~---~~~ 242 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKN-PKKLIVLDLKDERLALARK----FGADVVLNPPEVDVVEKIKELT---GGY 242 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEcCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh---CCC
Confidence 34456677665553 3445566677654 3468899988876655443 3442111111122223222221 123
Q ss_pred ceEEEEEcCCccchHHHHHHHHccCCCCcEEEEeC
Q 024097 195 SYDFAFVDAEKRMYQEYFELLLQLIRVGGIIVIDN 229 (272)
Q Consensus 195 ~fDlV~~d~~~~~~~~~l~~~~~lLkpgG~lvi~d 229 (272)
.+|+++-.... ...+..+.+.++++|.++.-.
T Consensus 243 ~vdvvld~~g~---~~~~~~~~~~l~~~G~~v~~g 274 (350)
T cd08256 243 GCDIYIEATGH---PSAVEQGLNMIRKLGRFVEFS 274 (350)
T ss_pred CCCEEEECCCC---hHHHHHHHHHhhcCCEEEEEc
Confidence 58988743221 124667788999999987643
No 494
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=80.40 E-value=24 Score=27.06 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=41.1
Q ss_pred EEEEEcCccCHHHHHHHHHC--CCCcEEEEEeCCh-------------------hHHHHHHHHHHHhCCCCCEEEEEcCh
Q 024097 122 RCIEVGVYTGYSSLAIALVL--PESGCLVACERDA-------------------RSLEVAKKYYERAGVSHKVKIKHGLA 180 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~--~~~~~v~~iD~s~-------------------~~~~~a~~~~~~~~~~~~v~~~~~d~ 180 (272)
+|+=+||| ..+..+++.+ ..-++++.+|.+. ...+.+++.+++.+..-+++.+....
T Consensus 1 ~VliiG~G--glGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~ 78 (143)
T cd01483 1 RVLLVGLG--GLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGI 78 (143)
T ss_pred CEEEECCC--HHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 47778886 3333333332 1135888888651 22345566666555433455555444
Q ss_pred hHH-HHHHHhCCCCCceEEEEEcCCc
Q 024097 181 ADS-LKALILNGEASSYDFAFVDAEK 205 (272)
Q Consensus 181 ~~~-~~~~~~~~~~~~fDlV~~d~~~ 205 (272)
.+. ...+ -..||+|+...+.
T Consensus 79 ~~~~~~~~-----~~~~diVi~~~d~ 99 (143)
T cd01483 79 SEDNLDDF-----LDGVDLVIDAIDN 99 (143)
T ss_pred ChhhHHHH-----hcCCCEEEECCCC
Confidence 332 1122 2689999876554
No 495
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=80.35 E-value=29 Score=27.93 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=41.7
Q ss_pred EEEEEcCcc-CHHHHHHHHHCCCCcEEEEEeCCh------------------hHHHHHHHHHHHhCCCCCEEEEEcChhH
Q 024097 122 RCIEVGVYT-GYSSLAIALVLPESGCLVACERDA------------------RSLEVAKKYYERAGVSHKVKIKHGLAAD 182 (272)
Q Consensus 122 ~VLEiG~G~-G~~~~~la~~~~~~~~v~~iD~s~------------------~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 182 (272)
+|+-+|||. |......+...+ -++++.+|.+. ...+.+++++++.+..-+++.+.....+
T Consensus 1 ~VlViG~GglGs~ia~~La~~G-vg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSG-VGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 478889873 443333222233 35799999875 2344556666655544345555444322
Q ss_pred -HHHHHHhCCCCCceEEEEEcCC
Q 024097 183 -SLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 183 -~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
....+ -..+|+|+...+
T Consensus 80 ~~~~~~-----l~~~DlVi~~~d 97 (174)
T cd01487 80 NNLEGL-----FGDCDIVVEAFD 97 (174)
T ss_pred hhHHHH-----hcCCCEEEECCC
Confidence 22222 257999886543
No 496
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=80.34 E-value=34 Score=29.73 Aligned_cols=82 Identities=11% Similarity=0.183 Sum_probs=43.4
Q ss_pred cCCCEEEEEcCc-cCHHHHHHHHHCCCCcEEEEEeCChh-------------------HHHHHHHHHHHhCCCCCEEEEE
Q 024097 118 LGAQRCIEVGVY-TGYSSLAIALVLPESGCLVACERDAR-------------------SLEVAKKYYERAGVSHKVKIKH 177 (272)
Q Consensus 118 ~~~~~VLEiG~G-~G~~~~~la~~~~~~~~v~~iD~s~~-------------------~~~~a~~~~~~~~~~~~v~~~~ 177 (272)
....+|+=+||| .|..+...+...+ -++++.+|.+.- ..+.+++++...+..-+++.+.
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~G-Vg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTG-IGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 356789999997 3444444333333 368999987621 1234555665554443454443
Q ss_pred cChh-HHHHHHHhCCCCCceEEEEEcCC
Q 024097 178 GLAA-DSLKALILNGEASSYDFAFVDAE 204 (272)
Q Consensus 178 ~d~~-~~~~~~~~~~~~~~fDlV~~d~~ 204 (272)
.-.. +....+. ...||+|+...+
T Consensus 107 ~~i~~e~~~~ll----~~~~D~VIdaiD 130 (268)
T PRK15116 107 DFITPDNVAEYM----SAGFSYVIDAID 130 (268)
T ss_pred cccChhhHHHHh----cCCCCEEEEcCC
Confidence 2111 2222221 246999886543
No 497
>PRK07582 cystathionine gamma-lyase; Validated
Probab=80.34 E-value=45 Score=30.19 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEcCccCHHHHHHHHHCCCCcEEEEEeCCh-hHHHHHHHHHHHhCCCCCEEEEEcChhHH
Q 024097 105 PDQAQLLAMLVQILGAQRCIEVGVYTGYSSLAIALVLPESGCLVACERDA-RSLEVAKKYYERAGVSHKVKIKHGLAADS 183 (272)
Q Consensus 105 ~~~~~~l~~l~~~~~~~~VLEiG~G~G~~~~~la~~~~~~~~v~~iD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 183 (272)
|....+-..+.... +..++-+|+|+......+...+.++.+|+..+..- .....++..++..|. ++.++. ..+.
T Consensus 51 p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~--~~~~ 125 (366)
T PRK07582 51 PTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAP--TAGM 125 (366)
T ss_pred ccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEEC--CCCh
Confidence 33444444444444 44566688888766655555566667888876554 333444444444443 244443 2221
Q ss_pred HHHHHhCCCCCceEEEEEcCCcc--chHHHHHHHHccCC-CCcEEEEeCCCC
Q 024097 184 LKALILNGEASSYDFAFVDAEKR--MYQEYFELLLQLIR-VGGIIVIDNVLW 232 (272)
Q Consensus 184 ~~~~~~~~~~~~fDlV~~d~~~~--~~~~~l~~~~~lLk-pgG~lvi~d~~~ 232 (272)
.... ....++|++..+.. .....++.+.++.+ .|..+++|++..
T Consensus 126 ~~~~-----~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~ 172 (366)
T PRK07582 126 AEAA-----LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTA 172 (366)
T ss_pred HHHh-----ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCC
Confidence 1111 23567888764421 11122444444443 467788888753
No 498
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.22 E-value=23 Score=29.88 Aligned_cols=80 Identities=9% Similarity=0.039 Sum_probs=46.8
Q ss_pred CCCEEEEEcCcc-CHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhCC--C
Q 024097 119 GAQRCIEVGVYT-GYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILNG--E 192 (272)
Q Consensus 119 ~~~~VLEiG~G~-G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~~--~ 192 (272)
.++++|-.|.++ +..+..+++.+. .+.+|+.++.+....+.+++ .. ..++.++..|..+. ...+.+.- .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~----~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQK----LV-DEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHh----hc-cCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899888774 567777777663 46789988877433222222 11 13577888887642 12211110 1
Q ss_pred CCceEEEEEcC
Q 024097 193 ASSYDFAFVDA 203 (272)
Q Consensus 193 ~~~fDlV~~d~ 203 (272)
.+.+|+++.++
T Consensus 81 ~g~iD~lv~nA 91 (252)
T PRK06079 81 VGKIDGIVHAI 91 (252)
T ss_pred hCCCCEEEEcc
Confidence 25789988654
No 499
>PRK08265 short chain dehydrogenase; Provisional
Probab=80.21 E-value=22 Score=30.21 Aligned_cols=79 Identities=13% Similarity=0.085 Sum_probs=47.2
Q ss_pred CCCEEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHHHhCCCCCEEEEEcChhHH--HHHHHhC--CCC
Q 024097 119 GAQRCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYERAGVSHKVKIKHGLAADS--LKALILN--GEA 193 (272)
Q Consensus 119 ~~~~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~~--~~~ 193 (272)
.++++|-.|+ +|..+..+++.+. .+.+|+.++.+++..+...+.+ ..++.++.+|..+. +..+... ...
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 5 AGKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4568887775 4557777766652 3679999999876544333222 23588888887653 1111110 012
Q ss_pred CceEEEEEcC
Q 024097 194 SSYDFAFVDA 203 (272)
Q Consensus 194 ~~fDlV~~d~ 203 (272)
+..|.++..+
T Consensus 79 g~id~lv~~a 88 (261)
T PRK08265 79 GRVDILVNLA 88 (261)
T ss_pred CCCCEEEECC
Confidence 5689888654
No 500
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.12 E-value=26 Score=30.43 Aligned_cols=92 Identities=14% Similarity=0.129 Sum_probs=52.7
Q ss_pred EEEEEcCccCHHHHHHHHHCC-CCcEEEEEeCChhHHHHHHHHHH-------HhCC-C--------CCEEEEEcChhHHH
Q 024097 122 RCIEVGVYTGYSSLAIALVLP-ESGCLVACERDARSLEVAKKYYE-------RAGV-S--------HKVKIKHGLAADSL 184 (272)
Q Consensus 122 ~VLEiG~G~G~~~~~la~~~~-~~~~v~~iD~s~~~~~~a~~~~~-------~~~~-~--------~~v~~~~~d~~~~~ 184 (272)
+|.=||+| ..+..++..+. .+.+|+.+|++++.++.+++.++ +.+. . .++++. .|.
T Consensus 5 kI~VIG~G--~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~~~---- 77 (282)
T PRK05808 5 KIGVIGAG--TMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-TDL---- 77 (282)
T ss_pred EEEEEccC--HHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH----
Confidence 56677775 33333333321 14589999999998876554332 2221 1 122221 222
Q ss_pred HHHHhCCCCCceEEEEEcCCccc--hHHHHHHHHccCCCCcEEE
Q 024097 185 KALILNGEASSYDFAFVDAEKRM--YQEYFELLLQLIRVGGIIV 226 (272)
Q Consensus 185 ~~~~~~~~~~~fDlV~~d~~~~~--~~~~l~~~~~lLkpgG~lv 226 (272)
..+ ...|+|+....... -...++.+.+.++++.+++
T Consensus 78 ~~~------~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 78 DDL------KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred HHh------ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 111 46799988765332 2577888888888887663
Done!