BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024098
MASTPSPFPQNYTFARPQAGSISRRKPPPTRQPLPSSPSSRCCGHALSLNYPFSPREIPT
CGRKLTCKAAEVSVTEEESSASGGGGGGENWVPVVPLSALPKGERRVIIQDGETILLLWY
KDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVMEG
GASSDASAEIVFSGKAQPGVTATDVNIEEVRMVVDEDLEGFGFNVTSELINGKAAAIGFL
LLLDFELLTGKGLLKGTGFLDFIYSVAGALNK

High Scoring Gene Products

Symbol, full name Information P value
AT1G71500 protein from Arabidopsis thaliana 2.1e-65

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024098
        (272 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2825369 - symbol:AT1G71500 species:3702 "Arabi...   430  2.1e-65   3


>TAIR|locus:2825369 [details] [associations]
            symbol:AT1G71500 species:3702 "Arabidopsis thaliana"
            [GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0016491
            "oxidoreductase activity" evidence=IEA] [GO:0051537 "2 iron, 2
            sulfur cluster binding" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] [GO:0009941
            "chloroplast envelope" evidence=IDA] [GO:0009535 "chloroplast
            thylakoid membrane" evidence=IDA] [GO:0009534 "chloroplast
            thylakoid" evidence=IDA] InterPro:IPR017941 PROSITE:PS51296
            EMBL:CP002684 GO:GO:0016491 GO:GO:0009941 GO:GO:0051537
            EMBL:AC016163 Gene3D:2.102.10.10 SUPFAM:SSF50022 GO:GO:0009535
            EMBL:AY093031 EMBL:AY087227 EMBL:AY128934 EMBL:AK119109
            IPI:IPI00537413 RefSeq:NP_565018.1 UniGene:At.17909
            ProteinModelPortal:Q9C9I7 STRING:Q9C9I7 PRIDE:Q9C9I7
            EnsemblPlants:AT1G71500.1 GeneID:843491 KEGG:ath:AT1G71500
            TAIR:At1g71500 HOGENOM:HOG000243736 InParanoid:Q9C9I7 OMA:YSEGLLN
            PhylomeDB:Q9C9I7 ProtClustDB:CLSN2689144 ArrayExpress:Q9C9I7
            Genevestigator:Q9C9I7 Uniprot:Q9C9I7
        Length = 287

 Score = 430 (156.4 bits), Expect = 2.1e-65, Sum P(3) = 2.1e-65
 Identities = 76/89 (85%), Positives = 86/89 (96%)

Query:    90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGAYSEGLINAKLTQD 149
             NWVPVVPLSALPKGERRV+IQD ETILLLWYK++VFAIENRSPAEGAYSEGL+NA+LTQD
Sbjct:    80 NWVPVVPLSALPKGERRVVIQDDETILLLWYKNDVFAIENRSPAEGAYSEGLLNARLTQD 139

Query:   150 GCIVCPTTESTFDLRTGAVRDWYPNNPVM 178
             GCIVCP+T+STFDLRTG +R+WYP NPV+
Sbjct:   140 GCIVCPSTDSTFDLRTGEIREWYPKNPVL 168

 Score = 220 (82.5 bits), Expect = 2.1e-65, Sum P(3) = 2.1e-65
 Identities = 46/93 (49%), Positives = 60/93 (64%)

Query:   177 VMEGGASSDASAEIVFSGKAQPGVTATDVNIEEVRMVVDEDLEGFGFNVTSELINGKAAA 236
             + + G  ++A+AEIVFSGKAQPG+TAT+VN++EVRM+VDE  EGFGF   +E+INGKAA 
Sbjct:   194 IRDSG-KTEAAAEIVFSGKAQPGLTATNVNVDEVRMIVDEGSEGFGFTKKNEVINGKAAV 252

Query:   237 IXXXXXXXXXXXXXXXXXXXXXFLDFIYSVAGA 269
             I                     FLDF+YS + A
Sbjct:   253 IGFLLLLDFELLTGKGLLKGTGFLDFLYSASDA 285

 Score = 46 (21.3 bits), Expect = 2.1e-65, Sum P(3) = 2.1e-65
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query:     1 MASTPSP-FPQNYTFARPQAGS 21
             MA+T S   P+NY+F  P+  S
Sbjct:     1 MATTASSSLPRNYSFTTPRPSS 22


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.410    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      272       212   0.00083  112 3  11 22  0.39    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  171 KB (2100 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.20u 0.08s 16.28t   Elapsed:  00:00:02
  Total cpu time:  16.20u 0.08s 16.28t   Elapsed:  00:00:02
  Start:  Sat May 11 10:53:16 2013   End:  Sat May 11 10:53:18 2013

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