Query 024098
Match_columns 272
No_of_seqs 362 out of 2042
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 08:58:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02377 MocE_fam_FeS Rieske 99.9 2.9E-24 6.3E-29 168.1 10.5 95 90-201 1-97 (101)
2 cd03528 Rieske_RO_ferredoxin R 99.9 4E-24 8.6E-29 165.5 10.9 94 91-201 1-95 (98)
3 PRK09965 3-phenylpropionate di 99.9 8.9E-24 1.9E-28 166.7 9.9 99 89-205 1-101 (106)
4 cd03531 Rieske_RO_Alpha_KSH Th 99.9 7.3E-24 1.6E-28 169.7 9.5 105 90-206 1-107 (115)
5 cd04338 Rieske_RO_Alpha_Tic55 99.9 1.1E-23 2.4E-28 172.9 10.1 114 85-207 12-127 (134)
6 cd03548 Rieske_RO_Alpha_OMO_CA 99.9 1.6E-23 3.4E-28 172.5 10.6 114 86-206 10-124 (136)
7 cd03537 Rieske_RO_Alpha_PrnD T 99.9 1.5E-23 3.2E-28 169.9 9.8 115 89-210 2-119 (123)
8 cd04337 Rieske_RO_Alpha_Cao Ca 99.9 1.6E-23 3.4E-28 171.1 9.7 109 85-207 12-122 (129)
9 PF13806 Rieske_2: Rieske-like 99.9 3.4E-23 7.3E-28 163.1 10.1 98 90-201 1-101 (104)
10 cd03478 Rieske_AIFL_N AIFL (ap 99.9 4.4E-23 9.5E-28 159.2 10.1 92 93-201 2-94 (95)
11 cd03530 Rieske_NirD_small_Baci 99.9 4.7E-23 1E-27 159.8 9.8 93 91-201 1-95 (98)
12 cd03480 Rieske_RO_Alpha_PaO Ri 99.9 6.6E-23 1.4E-27 169.2 11.1 115 86-206 13-130 (138)
13 cd03529 Rieske_NirD Assimilato 99.9 6.9E-23 1.5E-27 160.6 10.1 97 91-201 1-100 (103)
14 PRK09511 nirD nitrite reductas 99.9 1.1E-22 2.4E-27 161.3 10.3 97 90-201 3-104 (108)
15 cd03474 Rieske_T4moC Toluene-4 99.9 1.8E-22 3.8E-27 159.3 11.0 98 91-206 1-100 (108)
16 TIGR02378 nirD_assim_sml nitri 99.9 1.6E-22 3.6E-27 158.8 9.4 99 90-202 1-102 (105)
17 cd03479 Rieske_RO_Alpha_PhDO_l 99.9 1.4E-22 3.1E-27 168.3 9.5 112 86-206 17-131 (144)
18 PF00355 Rieske: Rieske [2Fe-2 99.9 2.3E-22 5E-27 155.2 9.5 85 90-178 1-88 (97)
19 cd03532 Rieske_RO_Alpha_VanA_D 99.9 1.8E-22 3.9E-27 161.7 8.9 105 88-205 3-109 (116)
20 cd03469 Rieske_RO_Alpha_N Ries 99.9 1.8E-22 3.9E-27 161.1 8.0 109 91-206 1-112 (118)
21 PLN00095 chlorophyllide a oxyg 99.9 1.5E-21 3.3E-26 182.9 11.9 111 84-206 66-179 (394)
22 COG2146 {NirD} Ferredoxin subu 99.9 1.8E-21 4E-26 153.8 9.9 98 89-203 3-103 (106)
23 cd03472 Rieske_RO_Alpha_BPDO_l 99.8 2.1E-21 4.6E-26 158.3 8.3 84 87-175 5-91 (128)
24 cd03535 Rieske_RO_Alpha_NDO Ri 99.8 2.4E-21 5.3E-26 156.8 8.4 82 89-175 1-85 (123)
25 cd03541 Rieske_RO_Alpha_CMO Ri 99.8 4.1E-21 8.8E-26 154.6 8.9 83 90-178 1-86 (118)
26 cd03545 Rieske_RO_Alpha_OHBDO_ 99.8 2.2E-21 4.9E-26 162.2 7.4 130 69-207 7-145 (150)
27 cd03473 Rieske_CMP_Neu5Ac_hydr 99.8 6.1E-21 1.3E-25 149.8 9.2 74 96-174 13-90 (107)
28 cd03539 Rieske_RO_Alpha_S5H Th 99.8 5.6E-21 1.2E-25 156.0 8.4 82 91-177 1-85 (129)
29 PLN02281 chlorophyllide a oxyg 99.8 1.6E-20 3.5E-25 182.7 11.3 107 86-206 216-324 (536)
30 cd03467 Rieske Rieske domain; 99.8 4.6E-20 1E-24 142.8 10.7 82 91-177 1-84 (98)
31 cd03536 Rieske_RO_Alpha_DTDO T 99.8 1.7E-20 3.6E-25 151.9 8.2 111 91-206 1-115 (123)
32 cd03538 Rieske_RO_Alpha_AntDO 99.8 1.5E-20 3.2E-25 156.6 7.3 99 69-176 5-107 (146)
33 PLN02518 pheophorbide a oxygen 99.8 5.3E-20 1.1E-24 181.1 12.5 116 86-206 86-206 (539)
34 cd03542 Rieske_RO_Alpha_HBDO R 99.8 6.9E-20 1.5E-24 148.4 8.8 77 91-172 1-80 (123)
35 cd03477 Rieske_YhfW_C YhfW fam 99.8 7.4E-20 1.6E-24 140.8 8.4 78 94-178 2-81 (91)
36 cd03476 Rieske_ArOX_small Smal 99.8 1.2E-18 2.5E-23 141.8 9.2 81 92-178 4-98 (126)
37 COG4638 HcaE Phenylpropionate 99.8 1.1E-18 2.3E-23 164.8 8.1 112 86-206 23-138 (367)
38 TIGR02694 arsenite_ox_S arseni 99.7 9.4E-18 2E-22 136.9 8.7 81 92-178 7-101 (129)
39 TIGR03228 anthran_1_2_A anthra 99.7 5.5E-18 1.2E-22 163.4 6.4 101 63-173 15-119 (438)
40 TIGR03229 benzo_1_2_benA benzo 99.7 2E-17 4.2E-22 159.6 6.1 101 64-173 16-119 (433)
41 cd03470 Rieske_cytochrome_bc1 99.6 4.7E-16 1E-20 126.5 8.8 77 96-178 5-111 (126)
42 cd03471 Rieske_cytochrome_b6f 99.6 3.6E-15 7.8E-20 121.0 8.4 85 101-204 21-110 (126)
43 PRK13474 cytochrome b6-f compl 99.5 3.5E-14 7.6E-19 122.0 9.1 82 101-201 73-159 (178)
44 TIGR01416 Rieske_proteo ubiqui 99.5 5E-14 1.1E-18 120.6 9.6 84 89-178 39-159 (174)
45 cd03475 Rieske_SoxF_SoxL SoxF 99.2 4.6E-11 1E-15 101.5 9.1 54 121-179 74-144 (171)
46 PHA02337 putative high light i 99.2 1.4E-11 3E-16 77.1 2.1 33 223-255 1-33 (35)
47 COG0723 QcrA Rieske Fe-S prote 98.8 1E-08 2.2E-13 87.9 6.4 52 123-180 100-153 (177)
48 PLN00014 light-harvesting-like 98.6 1.4E-08 3.1E-13 89.1 2.7 35 225-259 160-194 (250)
49 PLN00084 photosystem II subuni 98.5 3.3E-08 7.2E-13 83.0 2.4 36 224-259 135-171 (214)
50 KOG1671 Ubiquinol cytochrome c 98.5 1.2E-07 2.5E-12 81.7 4.8 76 96-176 91-193 (210)
51 TIGR03171 soxL2 Rieske iron-su 98.4 2.2E-07 4.8E-12 85.7 5.0 60 121-181 175-263 (321)
52 KOG1336 Monodehydroascorbate/f 96.9 0.00054 1.2E-08 66.6 2.1 40 133-177 1-41 (478)
53 PLN00089 fucoxanthin-chlorophy 96.3 0.0024 5.1E-08 56.4 2.3 30 226-255 179-208 (209)
54 PLN00100 light-harvesting comp 96.3 0.0013 2.9E-08 59.1 0.7 34 225-258 161-194 (246)
55 PLN00147 light-harvesting comp 96.3 0.0018 3.9E-08 58.6 1.4 33 225-257 201-233 (252)
56 PF00504 Chloroa_b-bind: Chlor 95.9 0.0024 5.3E-08 53.4 0.2 28 220-247 129-156 (156)
57 PLN00101 Photosystem I light-h 95.8 0.0026 5.7E-08 57.4 0.2 33 225-257 201-233 (250)
58 PLN00025 photosystem II light 95.7 0.0044 9.5E-08 56.4 1.3 33 225-257 207-239 (262)
59 PF00504 Chloroa_b-bind: Chlor 95.7 0.0021 4.6E-08 53.8 -0.7 33 220-252 25-57 (156)
60 PLN00099 light-harvesting comp 95.7 0.0045 9.8E-08 55.8 1.1 32 226-257 188-220 (243)
61 PLN00048 photosystem I light h 95.5 0.0053 1.2E-07 55.9 1.0 33 225-257 211-243 (262)
62 PLN00098 light-harvesting comp 95.4 0.0062 1.3E-07 55.6 1.2 33 225-257 216-248 (267)
63 PLN00171 photosystem light-ha 95.4 0.0067 1.5E-07 56.6 1.4 32 226-257 275-306 (324)
64 PLN00048 photosystem I light h 95.4 0.0091 2E-07 54.4 2.2 32 224-255 85-116 (262)
65 PLN00101 Photosystem I light-h 95.2 0.012 2.5E-07 53.3 2.3 31 224-254 91-121 (250)
66 PLN00097 photosystem I light h 95.2 0.0069 1.5E-07 54.6 0.8 34 224-257 197-230 (244)
67 PLN00187 photosystem II light- 95.2 0.0087 1.9E-07 55.1 1.4 32 226-257 237-268 (286)
68 PLN00120 fucoxanthin-chlorophy 94.3 0.021 4.5E-07 50.2 1.6 26 226-251 170-195 (202)
69 PLN00098 light-harvesting comp 94.1 0.033 7.2E-07 50.9 2.4 33 223-255 99-131 (267)
70 PLN00097 photosystem I light h 92.9 0.059 1.3E-06 48.6 1.9 33 222-254 80-112 (244)
71 PLN02449 ferrochelatase 92.8 0.074 1.6E-06 52.5 2.7 23 234-256 463-485 (485)
72 PLN00170 photosystem II light- 92.8 0.059 1.3E-06 48.9 1.8 34 222-255 93-126 (255)
73 PLN00025 photosystem II light 92.6 0.069 1.5E-06 48.7 2.0 32 222-253 89-120 (262)
74 PLN00147 light-harvesting comp 92.2 0.089 1.9E-06 47.7 2.1 32 222-253 81-112 (252)
75 PLN00170 photosystem II light- 92.0 0.052 1.1E-06 49.2 0.4 35 224-259 221-255 (255)
76 PLN00171 photosystem light-ha 91.9 0.11 2.4E-06 48.5 2.5 33 222-254 146-178 (324)
77 PLN00187 photosystem II light- 91.7 0.072 1.6E-06 49.1 1.0 28 224-251 133-160 (286)
78 PLN00100 light-harvesting comp 87.7 0.3 6.6E-06 44.1 1.7 27 223-249 72-98 (246)
79 PLN00099 light-harvesting comp 86.9 0.39 8.5E-06 43.4 2.0 30 221-250 79-108 (243)
80 PLN00089 fucoxanthin-chlorophy 86.7 0.58 1.3E-05 41.3 2.9 33 221-253 72-104 (209)
81 PF07009 DUF1312: Protein of u 81.6 4.1 8.8E-05 32.2 5.5 68 90-163 36-106 (113)
82 PF10080 DUF2318: Predicted me 65.6 38 0.00083 26.5 7.2 61 99-165 1-66 (102)
83 PRK00420 hypothetical protein; 60.7 7 0.00015 31.2 2.2 34 127-167 22-56 (112)
84 PLN00120 fucoxanthin-chlorophy 59.1 2.9 6.2E-05 36.8 -0.2 26 222-247 62-87 (202)
85 COG1645 Uncharacterized Zn-fin 57.8 6.1 0.00013 32.4 1.5 30 127-164 27-57 (131)
86 PF09740 DUF2043: Uncharacteri 53.6 6.7 0.00014 31.2 1.0 25 136-163 75-99 (110)
87 TIGR02098 MJ0042_CXXC MJ0042 f 52.3 14 0.00029 23.1 2.2 31 130-163 4-37 (38)
88 PF09538 FYDLN_acid: Protein o 51.5 10 0.00022 30.0 1.8 30 128-164 9-39 (108)
89 PF05265 DUF723: Protein of un 45.7 14 0.00031 26.2 1.6 15 149-163 30-44 (60)
90 PF09654 DUF2396: Protein of u 42.0 12 0.00026 31.0 0.9 42 125-172 3-46 (161)
91 TIGR02652 conserved hypothetic 38.6 16 0.00034 30.4 1.0 43 124-172 5-49 (163)
92 PF02959 Tax: HTLV Tax; Inter 38.4 10 0.00023 32.6 0.0 41 129-172 25-65 (222)
93 PF00484 Pro_CA: Carbonic anhy 37.5 17 0.00036 29.8 1.1 15 154-168 139-153 (153)
94 COG4391 Uncharacterized protei 36.2 41 0.00089 24.0 2.7 17 148-164 45-61 (62)
95 COG5341 Uncharacterized protei 35.3 1.4E+02 0.003 24.4 5.9 56 106-164 62-118 (132)
96 PF07282 OrfB_Zn_ribbon: Putat 35.3 51 0.0011 23.1 3.2 32 127-163 27-58 (69)
97 PF13719 zinc_ribbon_5: zinc-r 33.3 39 0.00084 21.2 2.1 30 130-162 4-36 (37)
98 cd00382 beta_CA Carbonic anhyd 32.1 20 0.00044 28.5 0.7 17 153-169 101-117 (119)
99 PLN00416 carbonate dehydratase 31.9 22 0.00048 32.4 1.0 17 154-170 228-244 (258)
100 PRK10437 carbonic anhydrase; P 31.2 23 0.0005 31.5 1.0 18 154-171 174-191 (220)
101 cd03378 beta_CA_cladeC Carboni 30.5 25 0.00054 29.5 1.0 16 154-169 137-152 (154)
102 PF14803 Nudix_N_2: Nudix N-te 30.0 48 0.0011 20.6 2.0 30 129-160 1-31 (34)
103 COG1096 Predicted RNA-binding 29.0 1.3E+02 0.0029 26.2 5.2 55 98-160 117-174 (188)
104 PLN02755 complex I subunit 28.9 26 0.00057 25.6 0.8 36 229-264 28-63 (71)
105 cd00884 beta_CA_cladeB Carboni 28.9 26 0.00056 30.4 0.9 16 154-169 173-188 (190)
106 cd03379 beta_CA_cladeD Carboni 27.4 31 0.00066 28.3 1.1 17 153-169 124-140 (142)
107 PRK15219 carbonic anhydrase; P 27.4 28 0.00061 31.5 0.9 17 153-169 226-242 (245)
108 cd00883 beta_CA_cladeA Carboni 26.0 31 0.00068 29.5 0.9 17 153-169 164-180 (182)
109 COG0288 CynT Carbonic anhydras 24.1 37 0.0008 29.9 1.0 16 155-170 179-194 (207)
110 PF15616 TerY-C: TerY-C metal 22.7 64 0.0014 26.4 2.1 34 129-163 78-117 (131)
111 PRK13747 putative mercury resi 22.4 26 0.00057 25.9 -0.2 9 150-158 24-32 (78)
112 PLN03014 carbonic anhydrase 21.7 44 0.00095 31.9 1.0 17 155-171 308-324 (347)
113 PF04798 Baculo_19: Baculoviru 21.5 2.3E+02 0.0049 23.7 5.1 45 91-136 25-75 (146)
114 PLN03019 carbonic anhydrase 21.3 45 0.00098 31.6 1.0 19 154-172 301-319 (330)
115 PF13540 RCC1_2: Regulator of 20.9 1.9E+02 0.0042 16.9 4.0 23 108-130 4-26 (30)
No 1
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.91 E-value=2.9e-24 Score=168.07 Aligned_cols=95 Identities=21% Similarity=0.350 Sum_probs=84.8
Q ss_pred ccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCc
Q 024098 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
+|+.++.++||++|+.+.+.++|++++|+|. +|+++|++|.|||+| +|++|.+ +++.|+||||||+||++||+
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~-----~~~~i~CP~Hg~~Fdl~tG~ 75 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLV-----MDTTVECPKHAGCFDYRTGE 75 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEE-----cCCEEECCccCCEEECCCCc
Confidence 4999999999999999999999999999998 899999999999999 5999998 67899999999999999999
Q ss_pred cccCCCCCCcccCCcCCCCcceEEeecccCCCcc
Q 024098 168 VRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVT 201 (272)
Q Consensus 168 ~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i 201 (272)
|+..|+..++ ..|+++.++|.+
T Consensus 76 ~~~~p~~~~l------------~~y~v~v~~g~v 97 (101)
T TIGR02377 76 ALNPPVCVNL------------KTYPVKVVDGAV 97 (101)
T ss_pred ccCCCccCCc------------ceEeEEEECCEE
Confidence 9988865444 467777777655
No 2
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.91 E-value=4e-24 Score=165.46 Aligned_cols=94 Identities=29% Similarity=0.539 Sum_probs=83.5
Q ss_pred cEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCccc
Q 024098 91 WVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVR 169 (272)
Q Consensus 91 W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 169 (272)
|+.|+.++||++|+.+.++++|++++|+|++|+++|++|+|||+| +|++|.+ +++.|+||||||+||++||+|+
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~~~~~~a~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~fd~~~G~~~ 75 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRVDGEFYATDDLCTHGDASLSEGYV-----EGGVIECPLHGGRFDLRTGKAL 75 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEECCEEEEECCcCCCCCCCCCCCeE-----eCCEEEeCCcCCEEECCCCccc
Confidence 999999999999999999999999999999889999999999999 5998887 5789999999999999999999
Q ss_pred cCCCCCCcccCCcCCCCcceEEeecccCCCcc
Q 024098 170 DWYPNNPVMEGGASSDASAEIVFSGKAQPGVT 201 (272)
Q Consensus 170 ~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i 201 (272)
.+|+..++ ..|+++.+.|.+
T Consensus 76 ~~p~~~~L------------~~~~v~~~~g~v 95 (98)
T cd03528 76 SLPATEPL------------KTYPVKVEDGDV 95 (98)
T ss_pred CCCCCCCc------------ceEeEEEECCEE
Confidence 98865443 466777666654
No 3
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.90 E-value=8.9e-24 Score=166.66 Aligned_cols=99 Identities=26% Similarity=0.427 Sum_probs=84.9
Q ss_pred CccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCC-CEEEeCCccceEeCCCC
Q 024098 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQD-GCIVCPTTESTFDLRTG 166 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~-~~i~CP~Hg~~Fdl~tG 166 (272)
+.|+.|+.++||++|+.+.+.++ ++++|+|.+|++||++|.|||+| +|++|.+ ++ +.|+||||||+||++||
T Consensus 1 m~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~~~g~~~A~~~~CpH~g~~L~~G~~-----~~~~~i~Cp~Hg~~Fd~~tG 74 (106)
T PRK09965 1 MNRIYACPVADLPEGEALRVDTS-PVIALFNVGGEFYAIDDRCSHGNASLSEGYL-----EDDATVECPLHAASFCLRTG 74 (106)
T ss_pred CCcEEeeeHHHcCCCCeEEEeCC-CeEEEEEECCEEEEEeCcCCCCCCCCCceEE-----CCCCEEEcCCCCCEEEcCCC
Confidence 46999999999999999998887 88999999999999999999999 5999998 45 79999999999999999
Q ss_pred ccccCCCCCCcccCCcCCCCcceEEeecccCCCcccccc
Q 024098 167 AVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDV 205 (272)
Q Consensus 167 ~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv 205 (272)
+++..|+..+ +..|+++.++|.++..+
T Consensus 75 ~~~~~p~~~~------------l~~y~v~v~~g~v~v~~ 101 (106)
T PRK09965 75 KALCLPATDP------------LRTYPVHVEGGDIFIDL 101 (106)
T ss_pred CeeCCCCCCC------------cceEeEEEECCEEEEEc
Confidence 9998775433 45778888877765443
No 4
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.90 E-value=7.3e-24 Score=169.66 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=90.9
Q ss_pred ccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCCCc
Q 024098 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
.|+.|+.++||++|+.+.++++|++++|+|+ +|+++|++|.|||+|+ |++|.+ +++.|+||||||+||+ ||+
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~-----~~~~i~CP~Hg~~fd~-~G~ 74 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTV-----KGDEIACPFHDWRWGG-DGR 74 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcc-----cCCEEECCCCCCEECC-CCC
Confidence 5999999999999999999999999999998 9999999999999995 999998 6789999999999999 999
Q ss_pred cccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 168 VRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 168 ~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
|+..|.....+ ....+..|+++++.|+++....
T Consensus 75 ~~~~p~~~~~p------~~~~l~~ypv~~~~g~v~v~~~ 107 (115)
T cd03531 75 CKAIPYARRVP------PLARTRAWPTLERNGQLFVWHD 107 (115)
T ss_pred EEECCcccCCC------cccccceEeEEEECCEEEEECC
Confidence 99988543221 1124578999999998865544
No 5
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.90 E-value=1.1e-23 Score=172.93 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=94.9
Q ss_pred CCCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEe
Q 024098 85 GGGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFD 162 (272)
Q Consensus 85 ~~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fd 162 (272)
....+.|+.|+.++||++|+.+.++++|++|+|+|+ +|+++|++|.|||+| +|++|.+ .++.|+||||||+||
T Consensus 12 ~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~-----~~~~i~CP~Hgw~Fd 86 (134)
T cd04338 12 YDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQL-----IDGKLECLYHGWQFG 86 (134)
T ss_pred cccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCee-----cCCEEEccCCCCEEC
Confidence 355689999999999999989999999999999997 899999999999999 5999998 678999999999999
Q ss_pred CCCCccccCCCCCCcccCCcCCCCcceEEeecccCCCcccccccc
Q 024098 163 LRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVNI 207 (272)
Q Consensus 163 l~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~~ 207 (272)
+ ||+|+..|....... ......+..|++++..|+++.....
T Consensus 87 ~-~G~~~~~P~~~~~~~---~~~~~~l~~y~v~~~~G~V~V~~~~ 127 (134)
T cd04338 87 G-EGKCVKIPQLPADAK---IPKNACVKSYEVRDSQGVVWMWMSE 127 (134)
T ss_pred C-CCCEEECCCCCccCC---CCcccCcceEeEEEECCEEEEEcCC
Confidence 7 999999885432211 1112246899999999998766553
No 6
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.90 E-value=1.6e-23 Score=172.45 Aligned_cols=114 Identities=23% Similarity=0.267 Sum_probs=92.7
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCC
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
.....|++|+.++||++|+.+.++++|++|+|+|.+|+++|++|+|||+| +|++|.... +++.|+||||||+||++
T Consensus 10 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r~~g~v~A~~n~CpHrg~~L~~g~~~~---~~~~i~Cp~Hgw~Fdl~ 86 (136)
T cd03548 10 GFRNHWYPALFSHELEEGEPKGIQLCGEPILLRRVDGKVYALKDRCLHRGVPLSKKPECF---TKGTITCWYHGWTYRLD 86 (136)
T ss_pred CcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEecCCEEEEEeCcCcCCCCccccCcccc---cCCEEEecCCccEEeCC
Confidence 44579999999999999999999999999999999999999999999999 499885311 57899999999999999
Q ss_pred CCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 165 TGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 165 tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
||+|+.+|..++... .....+..|++++..|+++.++.
T Consensus 87 tG~~~~~~~~p~~~~----~~~~~L~~ypv~~~~g~V~v~~~ 124 (136)
T cd03548 87 DGKLVTILANPDDPL----IGRTGLKTYPVEEAKGMIFVFVG 124 (136)
T ss_pred CccEEEcccCCCccc----cccCCCceEeEEEECCEEEEEeC
Confidence 999998764322110 11124678999999998876654
No 7
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.90 E-value=1.5e-23 Score=169.93 Aligned_cols=115 Identities=12% Similarity=0.204 Sum_probs=93.0
Q ss_pred CccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCC
Q 024098 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG 166 (272)
..|++|+.++||+ ++.+.+++.|++++|+|+ +|+++|++|+|||+| +|++|.+ +++.|+||||||+|| .||
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v-----~~~~l~CpyHGw~Fd-~~G 74 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRV-----KDGCIQCPFHHWRYD-EQG 74 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEE-----eCCEEECCCCCCEEC-CCC
Confidence 4799999999996 567889999999999998 899999999999999 5999998 678999999999999 699
Q ss_pred ccccCCCCCCccc-CCcCCCCcceEEeecccCCCcccccccccee
Q 024098 167 AVRDWYPNNPVME-GGASSDASAEIVFSGKAQPGVTATDVNIEEV 210 (272)
Q Consensus 167 ~~~~~P~~~pl~~-~g~~~~~~~v~vFp~k~~~G~i~sdv~~~Ep 210 (272)
+|+..|...+..+ .........+..|++++..|++|......++
T Consensus 75 ~~~~iP~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~ 119 (123)
T cd03537 75 QCVHIPGHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQP 119 (123)
T ss_pred CEEECCCCcccccccccCCcccccccEeEEEECCEEEEEcCCCCc
Confidence 9999986433110 0011122356789999999999877665444
No 8
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.90 E-value=1.6e-23 Score=171.08 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=93.5
Q ss_pred CCCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEe
Q 024098 85 GGGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFD 162 (272)
Q Consensus 85 ~~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fd 162 (272)
....+.|++|+.++||++|+.+.++++|++++|+|+ +|+++|++|.|||+|+ |++|.+ +++.|+||||||+||
T Consensus 12 ~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~-----~~~~i~CP~Hgw~Fd 86 (129)
T cd04337 12 PGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKV-----IEGRIQCPYHGWEYD 86 (129)
T ss_pred chhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcE-----eCCEEEeCCCCCEEC
Confidence 345679999999999999999999999999999997 8999999999999995 999988 678999999999999
Q ss_pred CCCCccccCCCCCCcccCCcCCCCcceEEeecccCCCcccccccc
Q 024098 163 LRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVNI 207 (272)
Q Consensus 163 l~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~~ 207 (272)
.||+|+..|..++ ....+..|+++++.|+++.+...
T Consensus 87 -~tG~~~~~P~~~~--------~~~~l~~y~v~v~~g~V~V~~~~ 122 (129)
T cd04337 87 -GDGECTKMPSTKC--------LNVGIAALPCMEQDGMIWVWPGD 122 (129)
T ss_pred -CCCCEEeCCcCCC--------ccCCcceEeEEEECCEEEEEcCC
Confidence 6999999885431 11246788999999988766553
No 9
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.89 E-value=3.4e-23 Score=163.14 Aligned_cols=98 Identities=37% Similarity=0.676 Sum_probs=85.0
Q ss_pred ccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcC-Cc-ccccCcccccccCCCEEEeCCccceEeCCCC
Q 024098 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPA-EG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH-~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG 166 (272)
+|++||.++||++++.+.+.++|++|+|||. +|++||++|.||| ++ +|++|.+.+. ..+.+|.||+|+|+|||+||
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~-~g~~~V~CPlH~~~f~L~tG 79 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDG-NGEPCVACPLHKWRFDLRTG 79 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEEC-TTEEEEEETTTTEEEETTTT
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccC-CCCEEEECCCCCCeEECCCc
Confidence 6999999999999999999999999999999 9999999999999 56 6999999532 12348999999999999999
Q ss_pred ccccCCCCCCcccCCcCCCCcceEEeecccCCCcc
Q 024098 167 AVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVT 201 (272)
Q Consensus 167 ~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i 201 (272)
+|+..+. ..+.+||++..+|.+
T Consensus 80 ~~~~~~~-------------~~l~~ypvrv~~g~V 101 (104)
T PF13806_consen 80 ECLEDPD-------------VSLRTYPVRVEDGQV 101 (104)
T ss_dssp EESSECS-------------EBSBEEEEEECTTEE
T ss_pred CcCCCCC-------------CcEEeEEEEEECCEE
Confidence 9997542 356789998887754
No 10
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.89 E-value=4.4e-23 Score=159.19 Aligned_cols=92 Identities=29% Similarity=0.460 Sum_probs=81.1
Q ss_pred EeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCccccC
Q 024098 93 PVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDW 171 (272)
Q Consensus 93 ~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~ 171 (272)
.|+.++||++|+.+.+.++|++++|+|.+|+++|++|.|||+| +|++|.+ .++.|+||||||+||++||+|+.+
T Consensus 2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~CP~Hg~~Fdl~tG~~~~~ 76 (95)
T cd03478 2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQGGEVHAIGAKCPHYGAPLAKGVL-----TDGRIRCPWHGACFNLRTGDIEDA 76 (95)
T ss_pred ceeehhhCCCCCEEEEEeCCcEEEEEEECCEEEEEcCcCcCCCCccCCCeE-----eCCEEEcCCCCCEEECCCCcCcCC
Confidence 4789999999999999999999999999999999999999999 5999988 578999999999999999999998
Q ss_pred CCCCCcccCCcCCCCcceEEeecccCCCcc
Q 024098 172 YPNNPVMEGGASSDASAEIVFSGKAQPGVT 201 (272)
Q Consensus 172 P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i 201 (272)
|+..++ ..|+++.++|.+
T Consensus 77 p~~~~l------------~~~~v~~~~g~i 94 (95)
T cd03478 77 PALDSL------------PCYEVEVEDGRV 94 (95)
T ss_pred CccCCc------------ceEEEEEECCEE
Confidence 865443 467777766653
No 11
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.89 E-value=4.7e-23 Score=159.78 Aligned_cols=93 Identities=30% Similarity=0.562 Sum_probs=81.1
Q ss_pred cEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCcc
Q 024098 91 WVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAV 168 (272)
Q Consensus 91 W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~ 168 (272)
|+.|+.++||++|+.+.+.++|++++|+|+ +|+++|++|.|||+| +|++|.+ +++.|+||||||+||++||++
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~Fdl~~G~~ 75 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIV-----HGEYVTCPLHNWVIDLETGEA 75 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEE-----cCCEEECCCCCCEEECCCCCC
Confidence 999999999999999999999999999999 599999999999999 5999988 678999999999999999998
Q ss_pred ccCCCCCCcccCCcCCCCcceEEeecccCCCcc
Q 024098 169 RDWYPNNPVMEGGASSDASAEIVFSGKAQPGVT 201 (272)
Q Consensus 169 ~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i 201 (272)
.. |+.. .+..|+++.++|.+
T Consensus 76 ~~-p~~~------------~l~~y~v~v~~g~v 95 (98)
T cd03530 76 QG-PDEG------------CVRTFPVKVEDGRV 95 (98)
T ss_pred CC-CCCC------------ccceEeEEEECCEE
Confidence 64 3222 24577887777754
No 12
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.89 E-value=6.6e-23 Score=169.21 Aligned_cols=115 Identities=19% Similarity=0.321 Sum_probs=93.0
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe--CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEe
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWY--KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFD 162 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~--~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fd 162 (272)
+..+.|+.|+.++||++|+.+.+++.|++|+|+|+ +|+++|++|+|||+| +|++|.+. .++.|+||||||+||
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~----~~~~i~CP~Hgw~Fd 88 (138)
T cd03480 13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRID----EEGCLECPYHGWSFD 88 (138)
T ss_pred CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEc----CCCEEEeCCCCCEEC
Confidence 55689999999999999999999999999999996 899999999999999 49999873 357999999999999
Q ss_pred CCCCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 163 LRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 163 l~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
. ||+|+..|....-.. ........+..|++++..|+++....
T Consensus 89 ~-tG~~~~~P~~~~~g~-~~~~~~~~l~~ypv~v~~g~V~V~~~ 130 (138)
T cd03480 89 G-SGSCQRIPQAAEGGK-AHTSPRACVASLPTAVRQGLLFVWPG 130 (138)
T ss_pred C-CCCEEECCCCccccc-cCCCcccccceEeEEEECCEEEEecC
Confidence 5 999999885432110 00011235678999999998876654
No 13
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.89 E-value=6.9e-23 Score=160.63 Aligned_cols=97 Identities=22% Similarity=0.396 Sum_probs=82.1
Q ss_pred cEEeeeCCCCCCCCeEEEEECCeEEEEEEeCC-EEEEEcCCCcCCc-c-cccCcccccccCCCEEEeCCccceEeCCCCc
Q 024098 91 WVPVVPLSALPKGERRVIIQDGETILLLWYKD-EVFAIENRSPAEG-A-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 91 W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g-~v~A~~n~CpH~g-~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
|+.||.++||++|+.+.+.++|++++|+|+++ ++||++|.|||++ + |++|.+.+. ..+..|+||||||+||++||+
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~-~~~~~i~Cp~Hg~~Fdl~tG~ 79 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDI-GGEPVVASPLYKQHFSLKTGR 79 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEccc-CCCeEEECCCCCCEEEcCCCC
Confidence 99999999999999999999999999999955 9999999999999 6 788987321 023589999999999999999
Q ss_pred cccCCCCCCcccCCcCCCCcceEEeecccCCCcc
Q 024098 168 VRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVT 201 (272)
Q Consensus 168 ~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i 201 (272)
|+..|. ..+..|++++++|.+
T Consensus 80 ~~~~p~-------------~~l~~y~v~~~~g~v 100 (103)
T cd03529 80 CLEDED-------------VSVATFPVRVEDGEV 100 (103)
T ss_pred ccCCCC-------------ccEeeEeEEEECCEE
Confidence 998762 135678888877754
No 14
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.88 E-value=1.1e-22 Score=161.27 Aligned_cols=97 Identities=21% Similarity=0.352 Sum_probs=82.1
Q ss_pred ccEEeeeCCCCCCCCeEEEEECCeEEEEEEe--CCEEEEEcCCCcCCc-c-cccCcccccccC-CCEEEeCCccceEeCC
Q 024098 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY--KDEVFAIENRSPAEG-A-YSEGLINAKLTQ-DGCIVCPTTESTFDLR 164 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~--~g~v~A~~n~CpH~g-~-L~~G~v~~~~~~-~~~i~CP~Hg~~Fdl~ 164 (272)
+|+.||.++||++|+.+.+.++|++|+|+|. +|++||++|.|||.+ + |++|.+.+. . +..|+||||+|+||++
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~--~g~~~V~CP~H~~~Fdl~ 80 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEH--QGELWVASPLKKQRFRLS 80 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccC--CCeEEEECCCCCCEEECC
Confidence 5999999999999999999999999999994 899999999999998 5 999988321 1 1259999999999999
Q ss_pred CCccccCCCCCCcccCCcCCCCcceEEeecccCCCcc
Q 024098 165 TGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVT 201 (272)
Q Consensus 165 tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i 201 (272)
||+|+..|. . .+..||++.++|.+
T Consensus 81 TG~~~~~~~-~------------~l~typV~ve~g~V 104 (108)
T PRK09511 81 DGLCMEDEQ-F------------SVKHYDARVKDGVV 104 (108)
T ss_pred CcccCCCCC-c------------cEeeEeEEEECCEE
Confidence 999997552 1 35688888877754
No 15
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.88 E-value=1.8e-22 Score=159.34 Aligned_cols=98 Identities=23% Similarity=0.313 Sum_probs=83.2
Q ss_pred cEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCcc
Q 024098 91 WVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAV 168 (272)
Q Consensus 91 W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~ 168 (272)
|+.|+.++||++|+.+.+.++|++++|++. +|+++|++|.|||+| +|+.|.+ +++.|+||||||+||++||++
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~-----~g~~i~CP~Hg~~Fdl~~G~~ 75 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGF-----DGGVLTCRAHLWQFDADTGEG 75 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcc-----cCCEEEeCCcCCEEECCCccc
Confidence 999999999999999999998887877776 999999999999999 5999887 678999999999999999998
Q ss_pred ccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 169 RDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 169 ~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
+. |+.. .+..|+++..+|.++.+..
T Consensus 76 ~~-~~~~------------~L~~~~v~v~~g~v~v~~~ 100 (108)
T cd03474 76 LN-PRDC------------RLARYPVKVEGGDILVDTE 100 (108)
T ss_pred cC-CCCC------------ccceEeEEEECCEEEEeCC
Confidence 75 3221 3467888888887765543
No 16
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.88 E-value=1.6e-22 Score=158.84 Aligned_cols=99 Identities=18% Similarity=0.397 Sum_probs=82.4
Q ss_pred ccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCC-c-ccccCcccccccCCCEEEeCCccceEeCCCC
Q 024098 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAE-G-AYSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~-g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG 166 (272)
+|++|+.++||++|+.+.+.++|++++|+|. +|++||++|.|||+ + +|++|.+.+.. .+..|+||||||+||++||
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~-~~~~i~Cp~Hg~~Fdl~tG 79 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQ-GELWVACPLHKRNFRLEDG 79 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCC-CcEEEECCcCCCEEEcCCc
Confidence 5999999999999999999999999999998 78999999999999 6 49999874210 1124999999999999999
Q ss_pred ccccCCCCCCcccCCcCCCCcceEEeecccCCCccc
Q 024098 167 AVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTA 202 (272)
Q Consensus 167 ~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~ 202 (272)
+|+..|. ..+..|+++.++|.++
T Consensus 80 ~~~~~~~-------------~~L~~y~v~v~~g~v~ 102 (105)
T TIGR02378 80 RCLEDDS-------------GSVRTYEVRVEDGRVY 102 (105)
T ss_pred cccCCCC-------------ccEeeEeEEEECCEEE
Confidence 9997552 1356788888887664
No 17
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.88 E-value=1.4e-22 Score=168.31 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=94.6
Q ss_pred CCCCccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEe
Q 024098 86 GGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFD 162 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fd 162 (272)
...+.|+.|+.++||+ +|+.+.+.++|++++|+|+ +|+++|++|+|||+|+ |+.|.+ .++.|+||||||+||
T Consensus 17 ~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~-----~~~~i~CP~Hgw~F~ 91 (144)
T cd03479 17 LLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRV-----EECGLRCCYHGWKFD 91 (144)
T ss_pred HhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcc-----cCCEEEccCCCcEEC
Confidence 4567899999999999 7999999999999999997 9999999999999995 999988 578999999999999
Q ss_pred CCCCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 163 LRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 163 l~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
+ ||+|+..|+..+... ......+..|++++..|+++....
T Consensus 92 ~-~G~~~~~P~~~~~~~---~~~~~~l~~~~v~~~~G~I~V~~~ 131 (144)
T cd03479 92 V-DGQCLEMPSEPPDSQ---LKQKVRQPAYPVRERGGLVWAYMG 131 (144)
T ss_pred C-CCCEEECCCCccccC---CccccCcceEeEEEECCEEEEECC
Confidence 7 899999986554321 112235678999999999876654
No 18
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.88 E-value=2.3e-22 Score=155.17 Aligned_cols=85 Identities=35% Similarity=0.617 Sum_probs=72.2
Q ss_pred ccEEeeeCCCCCC-CCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCc-ccccCc-ccccccCCCEEEeCCccceEeCCCC
Q 024098 90 NWVPVVPLSALPK-GERRVIIQDGETILLLWYKDEVFAIENRSPAEG-AYSEGL-INAKLTQDGCIVCPTTESTFDLRTG 166 (272)
Q Consensus 90 ~W~~v~~~~el~~-g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G~-v~~~~~~~~~i~CP~Hg~~Fdl~tG 166 (272)
+|+.|+.++||++ |..+.+.+++..+++++.+|+++|++|.|||+| +|+.|. .. +++.|+||||||+||++||
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~~~~~v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~----~~~~i~Cp~Hg~~Fd~~tG 76 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDVGGKLVLVRRSDGEIYAFSNRCPHQGCPLSEGPFSE----DGGVIVCPCHGWRFDLDTG 76 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEETTEEEEEEETTTEEEEEESB-TTTSBBGGCSSEET----TTTEEEETTTTEEEETTTS
T ss_pred CEEEeeEHHHCCCCCCEEEEEcCCcEEEEEeCCCCEEEEEccCCccceeEcceeccc----ccCEEEeCCcCCEEeCCCc
Confidence 6999999999998 888899996666666666999999999999999 598884 21 4689999999999999999
Q ss_pred ccccCCCCCCcc
Q 024098 167 AVRDWYPNNPVM 178 (272)
Q Consensus 167 ~~~~~P~~~pl~ 178 (272)
+++.+|+..+++
T Consensus 77 ~~~~~p~~~~l~ 88 (97)
T PF00355_consen 77 ECVGGPAPRPLP 88 (97)
T ss_dssp BEEESTTCSBST
T ss_pred eEecCCCCCCcC
Confidence 999999776553
No 19
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.87 E-value=1.8e-22 Score=161.68 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=89.2
Q ss_pred CCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCC
Q 024098 88 GENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRT 165 (272)
Q Consensus 88 ~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~t 165 (272)
.+.|++|+.++||+ |+.+.+.+.|++++|+|. +|+++|++|.|||+|+ |++|.+ .++.|+||||||+|| .|
T Consensus 3 ~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~-----~~~~i~Cp~Hg~~fd-~~ 75 (116)
T cd03532 3 RNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSV-----EGGGLVCGYHGLEFD-SD 75 (116)
T ss_pred CCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcc-----cCCEEEeCCCCcEEc-CC
Confidence 35899999999999 888999999999999997 9999999999999995 999998 678999999999999 59
Q ss_pred CccccCCCCCCcccCCcCCCCcceEEeecccCCCcccccc
Q 024098 166 GAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDV 205 (272)
Q Consensus 166 G~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv 205 (272)
|+|+..|.....+ +...+..|++++..|+++...
T Consensus 76 G~~~~~p~~~~~~------~~~~l~~~~v~~~~g~v~v~~ 109 (116)
T cd03532 76 GRCVHMPGQERVP------AKACVRSYPVVERDALIWIWM 109 (116)
T ss_pred CCEEeCCCCCCCC------CccccccCCEEEECCEEEEEc
Confidence 9999988654321 123467888888888886554
No 20
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.87 E-value=1.8e-22 Score=161.09 Aligned_cols=109 Identities=26% Similarity=0.348 Sum_probs=90.6
Q ss_pred cEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCCCc
Q 024098 91 WVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 91 W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
|+.||.++||+ +|+.+.+.++|++++|+|+ +|+++|++|.|||+|+ |+.|.+. +++.|+||||||+||++ |+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~----~~~~i~Cp~Hg~~Fd~~-G~ 75 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGG----NAGRLVCPYHGWTYDLD-GK 75 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCC----CCCEEECCCCCCEECCC-Cc
Confidence 99999999999 9999999999999999998 9999999999999994 9988762 46899999999999997 99
Q ss_pred cccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 168 VRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 168 ~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
|+.+|+..+.. ........+..|++++..|.++....
T Consensus 76 ~~~~P~~~~~~--~~~~~~~~L~~~~v~~~~g~v~v~~~ 112 (118)
T cd03469 76 LVGVPREEGFP--GFDKEKLGLRTVPVEEWGGLIFVNLD 112 (118)
T ss_pred EEeCCcccccC--CCCHHHCCCeEEEEEEECCEEEEEcC
Confidence 99998765432 11112234678899998888765544
No 21
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=99.86 E-value=1.5e-21 Score=182.87 Aligned_cols=111 Identities=14% Similarity=0.127 Sum_probs=93.5
Q ss_pred CCCCCCccEEeeeCCCC-CCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccce
Q 024098 84 GGGGGENWVPVVPLSAL-PKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTEST 160 (272)
Q Consensus 84 ~~~~~~~W~~v~~~~el-~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~ 160 (272)
+....+.|++|+.++|| ++|+...+++.|++++|+|+ +|+++|++|.|||+|+ |++|.+ +++.|+||||||+
T Consensus 66 ~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v-----~~g~L~CPYHGW~ 140 (394)
T PLN00095 66 TADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKL-----VDGKAQCPYHGWE 140 (394)
T ss_pred CCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcc-----cCCEEEecCCCcE
Confidence 34556899999999999 68999999999999999998 9999999999999995 999998 6789999999999
Q ss_pred EeCCCCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 161 FDLRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 161 Fdl~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
||. +|+|+..|...+... ...+..||+++.+|+++.+..
T Consensus 141 FD~-~G~C~~iP~~~~~~~------~~~v~tYPV~e~dGlVwVw~G 179 (394)
T PLN00095 141 YET-GGECAKMPSCKKFLK------GVFADAAPVIERDGFIFLWAG 179 (394)
T ss_pred ECC-CCCEeeCCCcccccc------ccccceEEEEEECCEEEEEeC
Confidence 998 899999986533211 113467899998998865544
No 22
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.86 E-value=1.8e-21 Score=153.76 Aligned_cols=98 Identities=30% Similarity=0.550 Sum_probs=82.8
Q ss_pred CccEEeeeCCCCCCCCeEEEEECC-eEEEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCC-CEEEeCCccceEeCCC
Q 024098 89 ENWVPVVPLSALPKGERRVIIQDG-ETILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQD-GCIVCPTTESTFDLRT 165 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~~g-~~vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~-~~i~CP~Hg~~Fdl~t 165 (272)
+.|+.+|.++||+++..+.+.+.+ +.+++++.+|++||++|.|||.+ +|++|.+ ++ ..|+||+|+|+||++|
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v-----~~~~~i~Cp~H~a~Fdl~t 77 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLV-----EGDETVVCPLHGARFDLRT 77 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEe-----CCCCEEECCccCCEEEcCC
Confidence 589999999999999999998855 45555566999999999999999 5999999 44 4799999999999999
Q ss_pred CccccCCCCCCcccCCcCCCCcceEEeecccCCCcccc
Q 024098 166 GAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTAT 203 (272)
Q Consensus 166 G~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~s 203 (272)
|+|+.+|+..+ +..||++.++|.++.
T Consensus 78 G~~~~~p~~~~------------l~~y~vrve~g~v~v 103 (106)
T COG2146 78 GECLEPPAGKT------------LKTYPVRVEGGRVFV 103 (106)
T ss_pred CceecCCCCCc------------eeEEeEEEECCEEEE
Confidence 99999885431 678898888887643
No 23
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.85 E-value=2.1e-21 Score=158.30 Aligned_cols=84 Identities=11% Similarity=0.207 Sum_probs=72.9
Q ss_pred CCCccEEeeeCCCCCC-CCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeC
Q 024098 87 GGENWVPVVPLSALPK-GERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDL 163 (272)
Q Consensus 87 ~~~~W~~v~~~~el~~-g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl 163 (272)
....|+.|+.++||++ |..+.+.+++++|+|+|+ +|+++|++|.|||+|+ |++|... ++..|+||||||+||+
T Consensus 5 ~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g----~~~~i~CP~Hgw~fd~ 80 (128)
T cd03472 5 FARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAG----NAKAFTCTYHGWAYDT 80 (128)
T ss_pred hhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCC----CcCEEECCcCCeEECC
Confidence 4568999999999995 666778899999999997 9999999999999995 9888752 3468999999999997
Q ss_pred CCCccccCCCCC
Q 024098 164 RTGAVRDWYPNN 175 (272)
Q Consensus 164 ~tG~~~~~P~~~ 175 (272)
||+|+..|..+
T Consensus 81 -~G~~~~~P~~~ 91 (128)
T cd03472 81 -AGNLVNVPFEK 91 (128)
T ss_pred -CcCEEeccCcc
Confidence 89999998643
No 24
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.85 E-value=2.4e-21 Score=156.78 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=71.3
Q ss_pred CccEEeeeCCCCCC-CCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCC
Q 024098 89 ENWVPVVPLSALPK-GERRVIIQDGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRT 165 (272)
Q Consensus 89 ~~W~~v~~~~el~~-g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~t 165 (272)
..|+.|+.++||++ |..+.+.+++++++|+|+ +|+++|++|.|||+| +|++|.+. .++.|+||||||+|| .|
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~----~~~~i~Cp~Hgw~Fd-~t 75 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMG----NTSHFRCPYHGWTYR-NT 75 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccC----CCCEEECCcCCCEEC-CC
Confidence 36999999999996 667777789999999997 999999999999999 59988762 246899999999999 69
Q ss_pred CccccCCCCC
Q 024098 166 GAVRDWYPNN 175 (272)
Q Consensus 166 G~~~~~P~~~ 175 (272)
|+|+..|...
T Consensus 76 G~~~~~p~~~ 85 (123)
T cd03535 76 GRLVGVPAQQ 85 (123)
T ss_pred cCEeeCCCcc
Confidence 9999988543
No 25
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.84 E-value=4.1e-21 Score=154.57 Aligned_cols=83 Identities=13% Similarity=0.185 Sum_probs=74.5
Q ss_pred ccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCCC
Q 024098 90 NWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (272)
Q Consensus 90 ~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG 166 (272)
.|+.|+.++||+ +|+.+.++++|++|+|+|+ +|+++|+.|.|||+|+ |++|.. +++.|+||||||+||+ +|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~-----~~~~i~CP~Hgw~f~l-~G 74 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSG-----KKSCFVCPYHGWVYGL-DG 74 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCcc-----ccCEEEeCCCCCEEcC-CC
Confidence 599999999999 5778889999999999997 8999999999999995 999987 5789999999999999 89
Q ss_pred ccccCCCCCCcc
Q 024098 167 AVRDWYPNNPVM 178 (272)
Q Consensus 167 ~~~~~P~~~pl~ 178 (272)
+++..|....+.
T Consensus 75 ~l~~~P~~~~~~ 86 (118)
T cd03541 75 SLTKATQATGIQ 86 (118)
T ss_pred eEEeCCCccccc
Confidence 999998665543
No 26
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.84 E-value=2.2e-21 Score=162.23 Aligned_cols=130 Identities=15% Similarity=0.187 Sum_probs=97.0
Q ss_pred ccccccccccccCCCCCCCC-CccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccc
Q 024098 69 AAEVSVTEEESSASGGGGGG-ENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINA 144 (272)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~-~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~ 144 (272)
+++....+.+.. .... +.|+.|+.++||+ +|+.+.+.++|++|+|+|+ +|+++|+.|.|||+|+ |++|...
T Consensus 7 y~d~~~~~~E~~----~if~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~n~CpHrg~~L~~g~~g- 81 (150)
T cd03545 7 FTDRAYFDREQE----RIFRGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWVNRCAHRGALVCRERRG- 81 (150)
T ss_pred ccCHHHHHHHHH----hhhCCCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEcccCcCCCCEecccccC-
Confidence 444444444444 3554 8999999999999 5899999999999999997 8999999999999995 9887641
Q ss_pred cccCCCEEEeCCccceEeCCCCccccCCCCCCccc-CC----cCCCCcceEEeecccCCCcccccccc
Q 024098 145 KLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVME-GG----ASSDASAEIVFSGKAQPGVTATDVNI 207 (272)
Q Consensus 145 ~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~~-~g----~~~~~~~v~vFp~k~~~G~i~sdv~~ 207 (272)
.++.|+||||||+||+ +|+|+..|....+.. .| .......+..|++.+..|+++.....
T Consensus 82 ---~~~~i~CP~Hgw~Fdl-~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~ 145 (150)
T cd03545 82 ---NDGSLTCVYHQWAYDL-KGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSD 145 (150)
T ss_pred ---CCCEEECCCCCCEECC-CCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCC
Confidence 4679999999999999 699999987654421 11 11111234556777777877665543
No 27
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.84 E-value=6.1e-21 Score=149.80 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=67.3
Q ss_pred eCCCCCCCCeEEEEE-CCeEEEEEEeCCEEEEEcCCCcCCc-ccccC--cccccccCCCEEEeCCccceEeCCCCccccC
Q 024098 96 PLSALPKGERRVIIQ-DGETILLLWYKDEVFAIENRSPAEG-AYSEG--LINAKLTQDGCIVCPTTESTFDLRTGAVRDW 171 (272)
Q Consensus 96 ~~~el~~g~~~~v~~-~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G--~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~ 171 (272)
.+.||++|..+.|.+ +|++|+|++.+|++||++|.|||++ +|++| .+ +++.|+||+|+|+||++||+++..
T Consensus 13 ~l~eL~~G~~~~v~v~~g~~I~V~~~~G~~~A~~n~CpH~g~pL~~g~g~~-----~g~~V~CP~Hg~~FDLrTG~~~~~ 87 (107)
T cd03473 13 EVANLKEGINFFRNKEDGKKYIIYKSKSELKACKNQCKHQGGLFIKDIEDL-----DGRTVRCTKHNWKLDVSTMKYVNP 87 (107)
T ss_pred HHhcCCCCceEEEEecCCcEEEEEEECCEEEEEcCCCCCCCccccCCcceE-----eCCEEEeCCCCCEEEcCCCCCccC
Confidence 358999999999999 9999999999999999999999999 58884 57 688999999999999999999987
Q ss_pred CCC
Q 024098 172 YPN 174 (272)
Q Consensus 172 P~~ 174 (272)
|+.
T Consensus 88 p~~ 90 (107)
T cd03473 88 PDS 90 (107)
T ss_pred Ccc
Confidence 754
No 28
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.84 E-value=5.6e-21 Score=155.99 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=72.6
Q ss_pred cEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCCCc
Q 024098 91 WVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 91 W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
|+.|+.++||+ +|..+.+.+++++|+|+|+ +|+++|+.|.|||+|+ |++|.+. +++.|+||||||+||+ +|+
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~----~~~~l~CPyHgw~fdl-~G~ 75 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNG----NAKDFVCPYHQWNYSL-KGD 75 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccC----ccCEEECCCCCCEECC-CCC
Confidence 99999999999 5899999999999999997 8999999999999995 9887752 3468999999999999 699
Q ss_pred cccCCCCCCc
Q 024098 168 VRDWYPNNPV 177 (272)
Q Consensus 168 ~~~~P~~~pl 177 (272)
++..|....+
T Consensus 76 l~~~p~~~~~ 85 (129)
T cd03539 76 LQGVPFRRGV 85 (129)
T ss_pred Eeeccccccc
Confidence 9999866544
No 29
>PLN02281 chlorophyllide a oxygenase
Probab=99.83 E-value=1.6e-20 Score=182.70 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=93.3
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeC
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDL 163 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl 163 (272)
...+.|++|+.++||++|+.+.+++.|++|+|+|+ +|+++|+.|+|||+| +|++|.+ +++.|+||||||+||
T Consensus 216 ~lrn~Wy~Va~s~EL~~g~~~~v~llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v-----~g~~L~CPYHGW~FD- 289 (536)
T PLN02281 216 HLKNFWYPVAFTADLKHDTMVPIECFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTV-----NEGRIQCPYHGWEYS- 289 (536)
T ss_pred hhhcccEEEEEHHHCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCcCCCCcccccee-----eCCEEEeCCCCCEEC-
Confidence 34579999999999999999999999999999998 899999999999999 5999998 678999999999999
Q ss_pred CCCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 164 RTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 164 ~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
.+|+|+..|...+. ...+..||+++..|++|....
T Consensus 290 ~dG~cv~iP~~~~~--------~~~l~sYPV~e~~GlVwV~lg 324 (536)
T PLN02281 290 TDGECKKMPSTKLL--------KVKIKSLPCLEQEGMIWIWPG 324 (536)
T ss_pred CCCCEeeCCCCccc--------cCCcceEeEEEECCEEEEEeC
Confidence 59999999865432 124678999999999876654
No 30
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.83 E-value=4.6e-20 Score=142.77 Aligned_cols=82 Identities=44% Similarity=0.752 Sum_probs=74.9
Q ss_pred cEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCcc
Q 024098 91 WVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAV 168 (272)
Q Consensus 91 W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~ 168 (272)
|+.++..++|+++..+.+.+.++.++|+|. +|+++|++|.|||+| +|..|.+ .++.|+||+|||+||++||++
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~-----~~~~i~Cp~H~~~f~~~~G~~ 75 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEG-----EDGCIVCPCHGSRFDLRTGEV 75 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCcc-----CCCEEEeCCCCCEEeCCCccC
Confidence 899999999999999999999999999998 679999999999999 5888876 678999999999999999999
Q ss_pred ccCCCCCCc
Q 024098 169 RDWYPNNPV 177 (272)
Q Consensus 169 ~~~P~~~pl 177 (272)
+.+|+..++
T Consensus 76 ~~~p~~~~l 84 (98)
T cd03467 76 VSGPAPRPL 84 (98)
T ss_pred cCCCCCCCc
Confidence 998865444
No 31
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.83 E-value=1.7e-20 Score=151.90 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=85.6
Q ss_pred cEEeeeCCCCCC-CCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCc
Q 024098 91 WVPVVPLSALPK-GERRVIIQDGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 91 W~~v~~~~el~~-g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
|+.||.++||++ |....+.+++++|+|+|+ +|+++|++|.|||+| +|+.|... ....|+||||||+||+ +|+
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~----~~~~i~Cp~Hgw~fd~-~G~ 75 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGG----NTQIHVCIYHGWAFRP-NGD 75 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCC----CcCEEECCcCCCEECC-CCc
Confidence 999999999996 667777899999999997 999999999999999 59877652 2357999999999997 899
Q ss_pred cccCCCCCCcccCC-cCCCCcceEEeecccCCCccccccc
Q 024098 168 VRDWYPNNPVMEGG-ASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 168 ~~~~P~~~pl~~~g-~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
++..|..+.+..+. .......+..|++++..|+++.+..
T Consensus 76 ~~~~p~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~ 115 (123)
T cd03536 76 FIGAPVEKECMHGKMRTKAELGLHKARVTLYGGLIFATWN 115 (123)
T ss_pred EEECCccccccccCCCCHHHCCCcceeEEEECCEEEEEeC
Confidence 99998654432111 1111123566788888888876654
No 32
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.82 E-value=1.5e-20 Score=156.63 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=80.3
Q ss_pred ccccccccccccCCCCCCCCCccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cc-cCcccc
Q 024098 69 AAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YS-EGLINA 144 (272)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~-~G~v~~ 144 (272)
+++...+..++. ....+.|+.|+.++||+ +|+.+.+.++|++|+|+|+ +|+++|+.|.|||+|+ |+ .|...
T Consensus 5 y~~~~~~~~e~~----~i~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~CpHrg~~L~~~~~g~- 79 (146)
T cd03538 5 YTDPEIFALEME----RLFGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGCGN- 79 (146)
T ss_pred EcCHHHHHHHHH----HHhhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCcCCCCEeecccccc-
Confidence 344444444444 35577999999999999 7899999999999999997 8999999999999995 85 44331
Q ss_pred cccCCCEEEeCCccceEeCCCCccccCCCCCC
Q 024098 145 KLTQDGCIVCPTTESTFDLRTGAVRDWYPNNP 176 (272)
Q Consensus 145 ~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~p 176 (272)
.++.|+||||||+||+ ||+++..|....
T Consensus 80 ---~~~~i~CP~Hgw~Fd~-~G~~~~~p~~~~ 107 (146)
T cd03538 80 ---TGKFFRCPYHAWSFKT-DGSLLAIPLKKG 107 (146)
T ss_pred ---cCCEEECCCCCCEECC-CCCEEECCchhc
Confidence 3568999999999997 999999986543
No 33
>PLN02518 pheophorbide a oxygenase
Probab=99.82 E-value=5.3e-20 Score=181.11 Aligned_cols=116 Identities=20% Similarity=0.268 Sum_probs=93.8
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe--CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEe
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWY--KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFD 162 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~--~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fd 162 (272)
.-.+.|++|+.++||++|+++.+++.|++|+|+|+ +|+++|++|+|||++ +|++|.++ +++.|+||||||+||
T Consensus 86 ~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~----~~g~L~CpYHGW~Fd 161 (539)
T PLN02518 86 SWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRID----ENGHLQCSYHGWSFD 161 (539)
T ss_pred hhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceec----CCCEEEcCCCCCEEc
Confidence 34589999999999998999999999999999996 899999999999999 59999983 367999999999999
Q ss_pred CCCCccccCCCCCCcccCC--cCCCCcceEEeecccCCCccccccc
Q 024098 163 LRTGAVRDWYPNNPVMEGG--ASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 163 l~tG~~~~~P~~~pl~~~g--~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
+ +|+|+..|...+..... ...+...+..||+++..|+++....
T Consensus 162 ~-~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~ 206 (539)
T PLN02518 162 G-CGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPD 206 (539)
T ss_pred C-CCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeC
Confidence 8 69999988543221000 1122235778999999999865544
No 34
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.81 E-value=6.9e-20 Score=148.42 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=69.1
Q ss_pred cEEeeeCCCCCC-CCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCCCc
Q 024098 91 WVPVVPLSALPK-GERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 91 W~~v~~~~el~~-g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
|+.|++++||++ |+.+.+.++|++++|+|. +|+++|++|.|||+|+ |++|... .++.|+||||||+|| .||+
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~----~~~~i~CP~Hg~~Fd-~~G~ 75 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQG----NKGTFTCPFHGWTFS-NTGK 75 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCcccccccc----CCCEEECcCCCCEec-CCcc
Confidence 999999999995 678888999999999998 9999999999999995 9888752 456999999999999 6999
Q ss_pred cccCC
Q 024098 168 VRDWY 172 (272)
Q Consensus 168 ~~~~P 172 (272)
++..|
T Consensus 76 ~~~~p 80 (123)
T cd03542 76 LLKVK 80 (123)
T ss_pred EEECC
Confidence 99766
No 35
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.81 E-value=7.4e-20 Score=140.77 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=70.4
Q ss_pred eeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCCCccccC
Q 024098 94 VVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDW 171 (272)
Q Consensus 94 v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~ 171 (272)
++.++||++|+.+.+.++|++|+|+|. +|+++|++|.|||+|+ |+.|.. ++.|+||||||+|| .||+++..
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~------~~~i~CP~Hg~~Fd-~~G~~~~~ 74 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA------EKSWDCPCHGSRFS-YDGEVIEG 74 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC------CCEEECCCCCCEEC-CCCcEeeC
Confidence 678899999999999999999999998 9999999999999995 887754 46899999999999 59999999
Q ss_pred CCCCCcc
Q 024098 172 YPNNPVM 178 (272)
Q Consensus 172 P~~~pl~ 178 (272)
|+..++.
T Consensus 75 Pa~~~l~ 81 (91)
T cd03477 75 PAVSGLK 81 (91)
T ss_pred CCCCCCC
Confidence 9877665
No 36
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.77 E-value=1.2e-18 Score=141.78 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=71.2
Q ss_pred EEeeeCCCCCCCCeEEEEECC--eEEEEEEe----------CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCcc
Q 024098 92 VPVVPLSALPKGERRVIIQDG--ETILLLWY----------KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTE 158 (272)
Q Consensus 92 ~~v~~~~el~~g~~~~v~~~g--~~vvl~r~----------~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg 158 (272)
+.||.++||++|+.+.+.+.+ ++++|+|. +|+++|++|.|||+|+ |++|. +++.|+|||||
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~------~~~~v~CP~Hg 77 (126)
T cd03476 4 VKVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP------SNKTFVCPCHF 77 (126)
T ss_pred eEEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc------cCCEEEccCcC
Confidence 578999999999999999887 89999997 6999999999999995 88765 46899999999
Q ss_pred ceEeCC-CCccccCCCCCCcc
Q 024098 159 STFDLR-TGAVRDWYPNNPVM 178 (272)
Q Consensus 159 ~~Fdl~-tG~~~~~P~~~pl~ 178 (272)
|+||++ +|+++.+|+..+|.
T Consensus 78 ~~Fdl~tgG~~~~gPa~~~L~ 98 (126)
T cd03476 78 SQFDPARGGQMVSGQATQNLP 98 (126)
T ss_pred CEEeCCCCCeEEcCCCCCCCC
Confidence 999997 67999988766664
No 37
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.76 E-value=1.1e-18 Score=164.84 Aligned_cols=112 Identities=23% Similarity=0.337 Sum_probs=90.8
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCC-CEEEeCCccceEe
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQD-GCIVCPTTESTFD 162 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~-~~i~CP~Hg~~Fd 162 (272)
...+.|+.||.++||++++++.+.+.|+.++|+|+ +|+++|+.|.|||+|+ |++|.+ .+ +.|+||||||+||
T Consensus 23 ~~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d~C~HRga~Ls~g~~-----~~~~~l~CpyHgW~y~ 97 (367)
T COG4638 23 IFYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRV-----GGKGRLTCPYHGWTYD 97 (367)
T ss_pred hhhhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEeccCCCCCchhccccC-----CCCceEecCCCceEEC
Confidence 34469999999999998899999999999999999 9999999999999996 999998 45 8999999999999
Q ss_pred CCCCccccCCCC-CCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 163 LRTGAVRDWYPN-NPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 163 l~tG~~~~~P~~-~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
+ +|+|+..|.. .+. +.-........|++++..|++|....
T Consensus 98 ~-~G~~~~ip~~~~~~---~~~~~~~~l~~~~~~~~~G~Iwi~~~ 138 (367)
T COG4638 98 L-DGRLRGVPARGYPL---DFDKSEHGLKRYPVEERYGFIWIWLG 138 (367)
T ss_pred C-CCcEecCCccccCC---CCCHhhCCccccceEEEccEEEEecC
Confidence 8 7999998842 111 11101113344888999999865444
No 38
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.73 E-value=9.4e-18 Score=136.94 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=69.9
Q ss_pred EEeeeCCCCCCCCeEEEEECC--eEEEEEE----------eCCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCcc
Q 024098 92 VPVVPLSALPKGERRVIIQDG--ETILLLW----------YKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTE 158 (272)
Q Consensus 92 ~~v~~~~el~~g~~~~v~~~g--~~vvl~r----------~~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg 158 (272)
+.||+++||++|+.+.+.+.+ .+++++| .+|++||+++.|||+|+ |+++. +++.|.|||||
T Consensus 7 ~~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~------~~~~i~CP~Hg 80 (129)
T TIGR02694 7 NRVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA------DNKTFNCPCHF 80 (129)
T ss_pred eEEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc------CCCEEEcCCCC
Confidence 678999999999999999875 4788887 58999999999999994 88754 57899999999
Q ss_pred ceEeCCC-CccccCCCCCCcc
Q 024098 159 STFDLRT-GAVRDWYPNNPVM 178 (272)
Q Consensus 159 ~~Fdl~t-G~~~~~P~~~pl~ 178 (272)
|+||++| |+++.+|+..+|.
T Consensus 81 a~Fdl~tgG~~~~gP~~~~L~ 101 (129)
T TIGR02694 81 SVFDPEKGGQQVWGQATQNLP 101 (129)
T ss_pred CEECCCCCCcEECCCCCCCCC
Confidence 9999997 5999888766665
No 39
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=99.72 E-value=5.5e-18 Score=163.42 Aligned_cols=101 Identities=18% Similarity=0.197 Sum_probs=87.5
Q ss_pred cceeeeccccccccccccCCCCCCCCCccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-ccc
Q 024098 63 RKLTCKAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSE 139 (272)
Q Consensus 63 r~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~ 139 (272)
|+-+..+++...++.++. ......|+.||+.+||+ +|+.+.+.+++++|+|+|+ +|+++|+.|+|||+|+ |+.
T Consensus 15 ~v~~~~ytd~~if~~E~~----~IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~N~C~HRGa~L~~ 90 (438)
T TIGR03228 15 RIARDMFTEPELFDLEME----LIFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALVNACQHRGATLTR 90 (438)
T ss_pred ecChheECCHHHHHHHHH----HHHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEcccCCCCCCcccc
Confidence 355566888888888887 35678999999999999 5999999999999999998 9999999999999996 875
Q ss_pred -CcccccccCCCEEEeCCccceEeCCCCccccCCC
Q 024098 140 -GLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYP 173 (272)
Q Consensus 140 -G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~ 173 (272)
+.. ....++||||||+||+ +|+|+..|.
T Consensus 91 ~~~G-----n~~~~~CPYHgW~y~~-dG~L~~vp~ 119 (438)
T TIGR03228 91 VGKG-----NQSTFTCPFHAWCYKS-DGRLVKVKA 119 (438)
T ss_pred CCcc-----ccCEEEcCCCCCcccC-CCceeecCc
Confidence 554 4568999999999998 899998874
No 40
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=99.69 E-value=2e-17 Score=159.56 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=86.5
Q ss_pred ceeeeccccccccccccCCCCCCCCCccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccC
Q 024098 64 KLTCKAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEG 140 (272)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G 140 (272)
+-...+++...++.++. ......|+.||+++||+ +|+.+.+.+++++|+|+|+ +|+++|+.|.|||+|+ |++|
T Consensus 16 ~~~~~Ytd~~~f~~E~~----~IF~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af~N~C~HRga~L~~~ 91 (433)
T TIGR03229 16 CKREMFTDPELFDLEMK----HIFEGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAFINACSHRGAMLCRH 91 (433)
T ss_pred CChhhcCCHHHHHHHHH----HHhhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEEeCcCCCCCCCcccc
Confidence 33455788888888776 45677899999999999 6788889999999999998 9999999999999995 9877
Q ss_pred cccccccCCCEEEeCCccceEeCCCCccccCCC
Q 024098 141 LINAKLTQDGCIVCPTTESTFDLRTGAVRDWYP 173 (272)
Q Consensus 141 ~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~ 173 (272)
... ....|+||||||+||. ||+++..|.
T Consensus 92 ~~g----~~~~~~CPyHgW~f~~-~G~l~~vP~ 119 (433)
T TIGR03229 92 KRG----NKTTYTCPFHGWTFNN-SGKLLKVKD 119 (433)
T ss_pred ccc----CCCEEEcCCCCCEecC-CcceEeCCC
Confidence 642 3568999999999995 999999985
No 41
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.65 E-value=4.7e-16 Score=126.53 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=68.1
Q ss_pred eCCCCCCCCeEEEEECCeEEEEEEe-----------------------------CCEEEEEcCCCcCCcc-cccCccccc
Q 024098 96 PLSALPKGERRVIIQDGETILLLWY-----------------------------KDEVFAIENRSPAEGA-YSEGLINAK 145 (272)
Q Consensus 96 ~~~el~~g~~~~v~~~g~~vvl~r~-----------------------------~g~v~A~~n~CpH~g~-L~~G~v~~~ 145 (272)
++++|++|+.+.+...|++|+|+|. +++++|+.+.|||+|+ +..+..
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~--- 81 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAG--- 81 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccC---
Confidence 6799999999999999999999995 6799999999999995 655544
Q ss_pred ccCCCEEEeCCccceEeCCCCccccCCCCCCcc
Q 024098 146 LTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVM 178 (272)
Q Consensus 146 ~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~ 178 (272)
.++.+.||||||+||+ +|+.+.+|+..+|.
T Consensus 82 --~~~~~~CPcHgs~Fdl-~G~~~~gPa~~~L~ 111 (126)
T cd03470 82 --DYGGFFCPCHGSHYDA-SGRIRKGPAPLNLE 111 (126)
T ss_pred --CCCEEEecCcCCEECC-CCeEecCCCCCCCC
Confidence 4689999999999999 69999998877775
No 42
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.59 E-value=3.6e-15 Score=121.05 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=64.9
Q ss_pred CCCCeEEEE--ECCeEEEEEEeCCEE--EEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCCCccccCCCCC
Q 024098 101 PKGERRVII--QDGETILLLWYKDEV--FAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNN 175 (272)
Q Consensus 101 ~~g~~~~v~--~~g~~vvl~r~~g~v--~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~ 175 (272)
.+|....++ .++..|+|++.+|++ ||++|.|||+|+ |..+. .++.|+||+|||+|| .||+++.+|+..
T Consensus 21 ~~~~~~~~~~~~~~~~Ilv~~~dg~i~~~A~~~~CpH~G~~l~~~~------~~~~i~CP~Hg~~Fd-~tG~~~~gPa~~ 93 (126)
T cd03471 21 NPGDRSLVQGLKGDPTYLIVEEDKTIANYGINAVCTHLGCVVPWNA------AENKFKCPCHGSQYD-ATGKVVRGPAPL 93 (126)
T ss_pred CCCCeEEEEEecCCeEEEEEeCCCeEEEEEecCCCcCCCCCcCccC------CCCEEEcCCCCCEEC-CCCCEecCCCCC
Confidence 456655554 567778888889977 899999999995 77654 357999999999999 699999888765
Q ss_pred CcccCCcCCCCcceEEeecccCCCccccc
Q 024098 176 PVMEGGASSDASAEIVFSGKAQPGVTATD 204 (272)
Q Consensus 176 pl~~~g~~~~~~~v~vFp~k~~~G~i~sd 204 (272)
++ ..|+++.+.|.++..
T Consensus 94 ~L------------~~y~V~vedg~I~V~ 110 (126)
T cd03471 94 SL------------ALVHATVDDDKVVLS 110 (126)
T ss_pred CC------------ceEeEEEECCEEEEE
Confidence 55 366777767766443
No 43
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.53 E-value=3.5e-14 Score=121.98 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=65.0
Q ss_pred CCCCeEEEE-ECCeE-EEEEEeCCEE--EEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCCCccccCCCCC
Q 024098 101 PKGERRVII-QDGET-ILLLWYKDEV--FAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNN 175 (272)
Q Consensus 101 ~~g~~~~v~-~~g~~-vvl~r~~g~v--~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~ 175 (272)
++|+.+.+. +.|.. +++++.+|++ ||+++.|||+|+ |..+.. ++.+.|||||++|| .||+++.+|+..
T Consensus 73 ~~g~~~~v~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~gc~l~~~~~------~~~~~CP~Hgs~Fd-~tG~~~~gPa~~ 145 (178)
T PRK13474 73 PAGDRSLVQGLKGDPTYLVVEEDGTIASYGINAVCTHLGCVVPWNSG------ENKFQCPCHGSQYD-ATGKVVRGPAPL 145 (178)
T ss_pred CCCCcEEEEEcCCCeEEEEEeCCCEEEEEEecCCCCCCCCccccccC------CCEEEecCcCCEEC-CCCCCccCCCCC
Confidence 778877776 66766 6777779999 788999999995 876653 46999999999999 699999999877
Q ss_pred CcccCCcCCCCcceEEeecccCCCcc
Q 024098 176 PVMEGGASSDASAEIVFSGKAQPGVT 201 (272)
Q Consensus 176 pl~~~g~~~~~~~v~vFp~k~~~G~i 201 (272)
+|. .|+++.++|.+
T Consensus 146 ~L~------------~y~v~v~~g~v 159 (178)
T PRK13474 146 SLA------------LVHVTVEDDKV 159 (178)
T ss_pred CCC------------eEeEEEECCEE
Confidence 764 55666666654
No 44
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.52 E-value=5e-14 Score=120.63 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=71.8
Q ss_pred CccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-----------------------------------CCEEEEEcCCCcC
Q 024098 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWY-----------------------------------KDEVFAIENRSPA 133 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-----------------------------------~g~v~A~~n~CpH 133 (272)
.+|+.| ++++|++|+.+.+.++|++++|+|. +++++|+++.|||
T Consensus 39 ~~~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH 117 (174)
T TIGR01416 39 GAPTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTH 117 (174)
T ss_pred CCcEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCC
Confidence 368999 8999999999999999999999986 3799999999999
Q ss_pred Ccc--cccCcccccccCCCEEEeCCccceEeCCCCccccCCCCCCcc
Q 024098 134 EGA--YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVM 178 (272)
Q Consensus 134 ~g~--L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~ 178 (272)
+|+ +..+... .++.+.|||||++||+ +|+++.+|+..+|.
T Consensus 118 ~Gc~~~~~~~~~----~~~~~~CPcHgs~Fd~-~G~~~~gpa~~~L~ 159 (174)
T TIGR01416 118 LGCIPTYGPEEG----DKGGFFCPCHGSHYDT-AGRVRKGPAPLNLP 159 (174)
T ss_pred CCCccccccCCC----CCCEEEeCCCCCEECC-CCcEecCCCCCCCC
Confidence 994 4343331 2468999999999999 69999999888876
No 45
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.22 E-value=4.6e-11 Score=101.49 Aligned_cols=54 Identities=19% Similarity=0.173 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCcCCcc-ccc---------------CcccccccCCCEEEeCCccceEeCCCCc-cccCCCCCCccc
Q 024098 121 KDEVFAIENRSPAEGA-YSE---------------GLINAKLTQDGCIVCPTTESTFDLRTGA-VRDWYPNNPVME 179 (272)
Q Consensus 121 ~g~v~A~~n~CpH~g~-L~~---------------G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~-~~~~P~~~pl~~ 179 (272)
+++++|+++.|||+|+ |.. |.. +++.|.||||||+||+++|. ++.+|+.++|+.
T Consensus 74 ~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~-----~~~~i~CPcHgS~FD~~tGg~v~~GPA~~pLp~ 144 (171)
T cd03475 74 NKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLAS-----KGAVIHCCCHGSTYDPYKGGVVLTGPAPRPLPA 144 (171)
T ss_pred CCEEEEEeCcCCCCCCcccccccccccccccccccccc-----cCCEEEcCCCCCEEeCCCCCeEcCCCCCCCcCE
Confidence 6899999999999995 642 222 57899999999999998885 666788888763
No 46
>PHA02337 putative high light inducible protein
Probab=99.16 E-value=1.4e-11 Score=77.14 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=30.6
Q ss_pred eeeecccccchhHHHHHHHHHHHHHHhCCcccc
Q 024098 223 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLK 255 (272)
Q Consensus 223 ft~~aE~~ngr~amig~~~~~~~e~~tg~~~~~ 255 (272)
|+.++|.||||+||+||+++++.|++||+++-.
T Consensus 1 ft~~aE~~NGRlAMiGfv~~~~~e~~tGq~ipG 33 (35)
T PHA02337 1 MTPEAEIFNGWLAMIGFVAAVGAYATTGQIIPG 33 (35)
T ss_pred CccHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC
Confidence 678899999999999999999999999998754
No 47
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.79 E-value=1e-08 Score=87.91 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=42.6
Q ss_pred EEEEEcCCCcCCcc-ccc-CcccccccCCCEEEeCCccceEeCCCCccccCCCCCCcccC
Q 024098 123 EVFAIENRSPAEGA-YSE-GLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVMEG 180 (272)
Q Consensus 123 ~v~A~~n~CpH~g~-L~~-G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~~~ 180 (272)
++.|+...|+|+|+ ... +.- ..+.|.|||||++||. +|.++.+|+.+||...
T Consensus 100 ~~~a~~~iCtHlGC~~~~~~~~-----~~~~~~CPCHGS~yd~-~g~vv~GPA~~~L~~~ 153 (177)
T COG0723 100 EIVAYSAICTHLGCTVPWNNAG-----AEGGFFCPCHGSRYDP-DGGVVKGPAPRPLPIP 153 (177)
T ss_pred cEEEEeeeccCCCCccCcccCC-----CCCeEEccCCCCeEcC-CCCeeCCCCCCCcCCc
Confidence 56699999999996 543 122 4689999999999998 6889999999998633
No 48
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=98.64 E-value=1.4e-08 Score=89.06 Aligned_cols=35 Identities=40% Similarity=0.667 Sum_probs=33.0
Q ss_pred eecccccchhHHHHHHHHHHHHHHhCCcccccccc
Q 024098 225 VTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGF 259 (272)
Q Consensus 225 ~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~g~ 259 (272)
.++|.+|||+|||||++++++|++||+|+++|+|-
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg~ 194 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMGN 194 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHhh
Confidence 45899999999999999999999999999999975
No 49
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=98.55 E-value=3.3e-08 Score=83.05 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=32.8
Q ss_pred eeecccccchhHHHHHHHHHHHHHHh-CCcccccccc
Q 024098 224 NVTSELINGKAAAIGFLLLLDFELLT-GKGLLKGTGF 259 (272)
Q Consensus 224 t~~aE~~ngr~amig~~~~~~~e~~t-g~~~~~~~g~ 259 (272)
+..+|.||||+||+||+++++.|++| |+|+|+|+++
T Consensus 135 qK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ 171 (214)
T PLN00084 135 QKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG 171 (214)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence 34579999999999999999999999 9999999863
No 50
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.51 E-value=1.2e-07 Score=81.73 Aligned_cols=76 Identities=20% Similarity=0.284 Sum_probs=58.8
Q ss_pred eCCCCCCCCeEEEEECCeEEEEEEe---------------------------CCEEEEEcCCCcCCcccccCcccccccC
Q 024098 96 PLSALPKGERRVIIQDGETILLLWY---------------------------KDEVFAIENRSPAEGAYSEGLINAKLTQ 148 (272)
Q Consensus 96 ~~~el~~g~~~~v~~~g~~vvl~r~---------------------------~g~v~A~~n~CpH~g~L~~G~v~~~~~~ 148 (272)
.+++||+|+-..++-.|+++++-+. +-+++++...|+|.|+..-+.- + +
T Consensus 91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~A-G---d 166 (210)
T KOG1671|consen 91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANA-G---D 166 (210)
T ss_pred eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccc-c---c
Confidence 6799999999999999999988532 2346999999999996311111 1 2
Q ss_pred CCEEEeCCccceEeCCCCccccCCCCCC
Q 024098 149 DGCIVCPTTESTFDLRTGAVRDWYPNNP 176 (272)
Q Consensus 149 ~~~i~CP~Hg~~Fdl~tG~~~~~P~~~p 176 (272)
-+.+.|||||++||. +|+...+|+...
T Consensus 167 ~gg~~CPCHGSHYda-sGRIrkGPAPln 193 (210)
T KOG1671|consen 167 YGGYYCPCHGSHYDA-SGRIRKGPAPLN 193 (210)
T ss_pred cCceecccccccccc-cCceecCCCCCc
Confidence 356999999999997 899999996643
No 51
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.44 E-value=2.2e-07 Score=85.68 Aligned_cols=60 Identities=20% Similarity=0.139 Sum_probs=43.9
Q ss_pred CCEEEEEcCCCcCCcc-ccc------Ccc-------------c-----ccccC---CCEEEeCCccceEeCCC-CccccC
Q 024098 121 KDEVFAIENRSPAEGA-YSE------GLI-------------N-----AKLTQ---DGCIVCPTTESTFDLRT-GAVRDW 171 (272)
Q Consensus 121 ~g~v~A~~n~CpH~g~-L~~------G~v-------------~-----~~~~~---~~~i~CP~Hg~~Fdl~t-G~~~~~ 171 (272)
++.|.||+..|+|+|+ +.. +.+ + +. .. .+.+.|||||++||+.+ |+++.+
T Consensus 175 ~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~CPCHgS~FD~~~gg~Vv~G 253 (321)
T TIGR03171 175 NKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAA-KQANVPALIHCDCHGSTYDPYHGAAVLTG 253 (321)
T ss_pred CCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhh-hccCCCCeEECCCCCCEECCCCCCceeCC
Confidence 4779999999999995 521 000 0 00 01 24899999999999987 589999
Q ss_pred CCCCCcccCC
Q 024098 172 YPNNPVMEGG 181 (272)
Q Consensus 172 P~~~pl~~~g 181 (272)
|+.+||++.-
T Consensus 254 PA~rpLp~i~ 263 (321)
T TIGR03171 254 PTVRPLPAVI 263 (321)
T ss_pred CCCCCCCcce
Confidence 9999987443
No 52
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.85 E-value=0.00054 Score=66.63 Aligned_cols=40 Identities=25% Similarity=0.565 Sum_probs=34.7
Q ss_pred CCc-ccccCcccccccCCCEEEeCCccceEeCCCCccccCCCCCCc
Q 024098 133 AEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPV 177 (272)
Q Consensus 133 H~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl 177 (272)
|.| ||..|.. ..+.++|||||..|+++||..-+-|....+
T Consensus 1 hygapl~~g~~-----s~g~v~cpwhgacfn~~~gdiedfP~~~sl 41 (478)
T KOG1336|consen 1 HYGAPLAKGVL-----SRGRVRCPWHGACFNLSTGDIEDFPGLDSL 41 (478)
T ss_pred CCCcchhhccc-----cCCcccccccceeecCCcCchhhCcCccce
Confidence 889 5998966 679999999999999999999988866554
No 53
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=96.30 E-value=0.0024 Score=56.40 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=27.6
Q ss_pred ecccccchhHHHHHHHHHHHHHHhCCcccc
Q 024098 226 TSELINGKAAAIGFLLLLDFELLTGKGLLK 255 (272)
Q Consensus 226 ~aE~~ngr~amig~~~~~~~e~~tg~~~~~ 255 (272)
..|+.|||+||+|++..+..|.+||+|++.
T Consensus 179 ~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 179 DKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 459999999999999999999999999874
No 54
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=96.29 E-value=0.0013 Score=59.14 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=30.9
Q ss_pred eecccccchhHHHHHHHHHHHHHHhCCccccccc
Q 024098 225 VTSELINGKAAAIGFLLLLDFELLTGKGLLKGTG 258 (272)
Q Consensus 225 ~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~g 258 (272)
...|+.|||+||++++..++.+++||+|.+++|+
T Consensus 161 K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~ 194 (246)
T PLN00100 161 KVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLK 194 (246)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHH
Confidence 3569999999999999999999999999998863
No 55
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=96.27 E-value=0.0018 Score=58.63 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=30.6
Q ss_pred eecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 225 VTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 225 ~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
...|+.|||+||++++..++.|++||+|.+.+|
T Consensus 201 k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL 233 (252)
T PLN00147 201 KLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNL 233 (252)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 346999999999999999999999999999887
No 56
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=95.86 E-value=0.0024 Score=53.37 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=23.8
Q ss_pred CcceeeecccccchhHHHHHHHHHHHHH
Q 024098 220 GFGFNVTSELINGKAAAIGFLLLLDFEL 247 (272)
Q Consensus 220 ~fGft~~aE~~ngr~amig~~~~~~~e~ 247 (272)
.+.+...+|++|||+||+|++..++.|.
T Consensus 129 ~~~~~~~~El~NGRlAMla~~g~~~~e~ 156 (156)
T PF00504_consen 129 EKEFMQLAELKNGRLAMLAFAGFVAQEA 156 (156)
T ss_dssp SHHCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4457788999999999999999998873
No 57
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=95.79 E-value=0.0026 Score=57.45 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=30.5
Q ss_pred eecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 225 VTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 225 ~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
...|+.|||+||++++..++.+++||+|.+++|
T Consensus 201 k~kEIKNGRLAM~A~lGf~~Q~~vTG~gPi~nL 233 (250)
T PLN00101 201 KEKELANGRLAMLAFLGFVVQHNVTGKGPFENL 233 (250)
T ss_pred HHHHHhhcchHHHHHhhHhheehccCCChHHHH
Confidence 346999999999999999999999999999887
No 58
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=95.72 E-value=0.0044 Score=56.39 Aligned_cols=33 Identities=27% Similarity=0.414 Sum_probs=30.6
Q ss_pred eecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 225 VTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 225 ~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
...|+.|||+||++++..++.+++||+|.+++|
T Consensus 207 k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL 239 (262)
T PLN00025 207 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 239 (262)
T ss_pred HHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHH
Confidence 456999999999999999999999999999876
No 59
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=95.70 E-value=0.0021 Score=53.76 Aligned_cols=33 Identities=30% Similarity=0.343 Sum_probs=29.4
Q ss_pred CcceeeecccccchhHHHHHHHHHHHHHHhCCc
Q 024098 220 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKG 252 (272)
Q Consensus 220 ~fGft~~aE~~ngr~amig~~~~~~~e~~tg~~ 252 (272)
.+.|...+|++|||+||+|++..++.|+.++.+
T Consensus 25 ~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~ 57 (156)
T PF00504_consen 25 DFAWYREAELKHGRVAMLAFVGALVQEAGTGFP 57 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTT
T ss_pred hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCC
Confidence 456778899999999999999999999998854
No 60
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=95.65 E-value=0.0045 Score=55.78 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=28.8
Q ss_pred ecccccchhHHHHHHHHHHHH-HHhCCcccccc
Q 024098 226 TSELINGKAAAIGFLLLLDFE-LLTGKGLLKGT 257 (272)
Q Consensus 226 ~aE~~ngr~amig~~~~~~~e-~~tg~~~~~~~ 257 (272)
..|+-|||+||++++..++.| ++||+|.+.+|
T Consensus 188 ~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL 220 (243)
T PLN00099 188 VKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 220 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHH
Confidence 469999999999999999998 57899999886
No 61
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=95.48 E-value=0.0053 Score=55.89 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=30.3
Q ss_pred eecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 225 VTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 225 ~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
...|+.|||+||++++..++.|++||+|.+.+|
T Consensus 211 k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L 243 (262)
T PLN00048 211 KLKEVKNGRLAMLAILGYFIQALVTGVGPFQNL 243 (262)
T ss_pred HHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHH
Confidence 346899999999999999999999999998876
No 62
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=95.43 E-value=0.0062 Score=55.57 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=30.7
Q ss_pred eecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 225 VTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 225 ~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
...|+-|||+||++++..++.+.+||+|.+++|
T Consensus 216 k~kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL 248 (267)
T PLN00098 216 RTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENL 248 (267)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhhcCCChHHHH
Confidence 447999999999999999999999999999987
No 63
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=95.42 E-value=0.0067 Score=56.57 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=29.7
Q ss_pred ecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 226 TSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 226 ~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
..|+.|||+||++++..++.+.+||+|.+.+|
T Consensus 275 ~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL 306 (324)
T PLN00171 275 VKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNL 306 (324)
T ss_pred HHHHhhhHHHHHHHHHHHHhHhhcCCChHHHH
Confidence 35999999999999999999999999998875
No 64
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=95.39 E-value=0.0091 Score=54.41 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=28.7
Q ss_pred eeecccccchhHHHHHHHHHHHHHHhCCcccc
Q 024098 224 NVTSELINGKAAAIGFLLLLDFELLTGKGLLK 255 (272)
Q Consensus 224 t~~aE~~ngr~amig~~~~~~~e~~tg~~~~~ 255 (272)
...+|+.||||||+|++..++.|++++.|++.
T Consensus 85 ~r~aEL~hGR~AMLa~~G~lv~Ell~~~g~~~ 116 (262)
T PLN00048 85 LAYGEVINGRFAMLGAAGAIAPEILGKAGLIP 116 (262)
T ss_pred HHHHHhhcchHHHHHHhhHHHHHHhccCCccc
Confidence 35679999999999999999999999888864
No 65
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=95.24 E-value=0.012 Score=53.31 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=28.4
Q ss_pred eeecccccchhHHHHHHHHHHHHHHhCCccc
Q 024098 224 NVTSELINGKAAAIGFLLLLDFELLTGKGLL 254 (272)
Q Consensus 224 t~~aE~~ngr~amig~~~~~~~e~~tg~~~~ 254 (272)
...+|+.||||||+|++..++.|++++.|++
T Consensus 91 ~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~ 121 (250)
T PLN00101 91 FVQAELVNGRWAMLGVAGMLLPEVFTKIGII 121 (250)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 4567999999999999999999999999876
No 66
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=95.22 E-value=0.0069 Score=54.57 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.1
Q ss_pred eeecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 224 NVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 224 t~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
....|+.|||+||++++..++.+.+||+|.+++|
T Consensus 197 lk~kEiknGRLAM~A~~G~~~q~~vTGkGPl~nL 230 (244)
T PLN00097 197 LKLKEIANGRLAMLAFLGCCAQAIQTGTGPVDNL 230 (244)
T ss_pred HHHHHHHhhHHHHHHHHHHhhhhhccCCCHHHHH
Confidence 3457999999999999999999999999999886
No 67
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=95.19 E-value=0.0087 Score=55.06 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=29.6
Q ss_pred ecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 226 TSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 226 ~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
..|+.|||+||++++..++.+++||+|.++.|
T Consensus 237 ~kEIkNGRLAMlA~lG~~vq~~vtg~GPi~nL 268 (286)
T PLN00187 237 LAEIKHARLAMVAFLGFAVQAAATGKGPLNNW 268 (286)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 56999999999999999999999999998765
No 68
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=94.35 E-value=0.021 Score=50.18 Aligned_cols=26 Identities=38% Similarity=0.484 Sum_probs=24.1
Q ss_pred ecccccchhHHHHHHHHHHHHHHhCC
Q 024098 226 TSELINGKAAAIGFLLLLDFELLTGK 251 (272)
Q Consensus 226 ~aE~~ngr~amig~~~~~~~e~~tg~ 251 (272)
..|+-|||+||||++..+..|.++|.
T Consensus 170 ~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 170 AIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 35999999999999999999999996
No 69
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=94.11 E-value=0.033 Score=50.88 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=29.1
Q ss_pred eeeecccccchhHHHHHHHHHHHHHHhCCcccc
Q 024098 223 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLK 255 (272)
Q Consensus 223 ft~~aE~~ngr~amig~~~~~~~e~~tg~~~~~ 255 (272)
+-..+|+.||||||++++..++.|++++.|++.
T Consensus 99 ~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~ 131 (267)
T PLN00098 99 WFAQAELMHSRWAMLAVAGILIPECLERLGFIE 131 (267)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHhcCCCccc
Confidence 446789999999999999999999999887754
No 70
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=92.90 E-value=0.059 Score=48.63 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=28.5
Q ss_pred ceeeecccccchhHHHHHHHHHHHHHHhCCccc
Q 024098 222 GFNVTSELINGKAAAIGFLLLLDFELLTGKGLL 254 (272)
Q Consensus 222 Gft~~aE~~ngr~amig~~~~~~~e~~tg~~~~ 254 (272)
.+...+|+.||||||+|++..++.|++++.|+.
T Consensus 80 ~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~ 112 (244)
T PLN00097 80 KWFVQAELMHARWAMLGLAGCVAPELLTKIGMA 112 (244)
T ss_pred HHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcc
Confidence 344678999999999999999999999988763
No 71
>PLN02449 ferrochelatase
Probab=92.83 E-value=0.074 Score=52.53 Aligned_cols=23 Identities=43% Similarity=0.561 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHhCCccccc
Q 024098 234 AAAIGFLLLLDFELLTGKGLLKG 256 (272)
Q Consensus 234 ~amig~~~~~~~e~~tg~~~~~~ 256 (272)
+||+||+++++.|+++|+|.|++
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~ 485 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLHQ 485 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCCC
Confidence 99999999999999999999874
No 72
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=92.82 E-value=0.059 Score=48.87 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=28.7
Q ss_pred ceeeecccccchhHHHHHHHHHHHHHHhCCcccc
Q 024098 222 GFNVTSELINGKAAAIGFLLLLDFELLTGKGLLK 255 (272)
Q Consensus 222 Gft~~aE~~ngr~amig~~~~~~~e~~tg~~~~~ 255 (272)
.+...+|+.||||||++++..++.|+++|...++
T Consensus 93 ~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~ 126 (255)
T PLN00170 93 KWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 126 (255)
T ss_pred HHHHHHHhhccHHHHHHHHhhhhHHHccCCChhh
Confidence 3445679999999999999999999999886544
No 73
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=92.65 E-value=0.069 Score=48.68 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=27.3
Q ss_pred ceeeecccccchhHHHHHHHHHHHHHHhCCcc
Q 024098 222 GFNVTSELINGKAAAIGFLLLLDFELLTGKGL 253 (272)
Q Consensus 222 Gft~~aE~~ngr~amig~~~~~~~e~~tg~~~ 253 (272)
-+...+|+.||||||+|++..++.|++++.|+
T Consensus 89 ~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~ 120 (262)
T PLN00025 89 ARNRELEVIHARWAMLGALGCVTPELLAKNGV 120 (262)
T ss_pred HHHHHHHHhccHHHHHHHhhhhhHHHhhcCCc
Confidence 33456799999999999999999999987665
No 74
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=92.17 E-value=0.089 Score=47.73 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=27.5
Q ss_pred ceeeecccccchhHHHHHHHHHHHHHHhCCcc
Q 024098 222 GFNVTSELINGKAAAIGFLLLLDFELLTGKGL 253 (272)
Q Consensus 222 Gft~~aE~~ngr~amig~~~~~~~e~~tg~~~ 253 (272)
-+-..+|+.|||+||++++..++.|+++..|+
T Consensus 81 ~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~ 112 (252)
T PLN00147 81 KWYVQAELVHSRFAMAGVAGILFTDLLRVTGI 112 (252)
T ss_pred HHHHHHHhhccHHHHHHHhhhhHHHHhccCCC
Confidence 34466799999999999999999999987764
No 75
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=91.99 E-value=0.052 Score=49.24 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=29.6
Q ss_pred eeecccccchhHHHHHHHHHHHHHHhCCcccccccc
Q 024098 224 NVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTGF 259 (272)
Q Consensus 224 t~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~g~ 259 (272)
....|+-|||+||+.++..++ ++.||+|.|..||+
T Consensus 221 lk~kEIKnGRLAMlA~lGf~~-Qa~~g~~p~~~l~~ 255 (255)
T PLN00170 221 LKLAEIKHARLAMVAMLIFYF-EAGQGKTPLGALGL 255 (255)
T ss_pred HHHHHHhhhHHHHHHHHhHhe-eeccCCCchhhhcC
Confidence 456799999999999988666 44899999999885
No 76
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=91.86 E-value=0.11 Score=48.53 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=27.7
Q ss_pred ceeeecccccchhHHHHHHHHHHHHHHhCCccc
Q 024098 222 GFNVTSELINGKAAAIGFLLLLDFELLTGKGLL 254 (272)
Q Consensus 222 Gft~~aE~~ngr~amig~~~~~~~e~~tg~~~~ 254 (272)
-+-..+|+.||||||++++..++.|++++.|.+
T Consensus 146 ~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~ 178 (324)
T PLN00171 146 DKYFNFEILHARWAMLAALGVVIPEVLDLFGAV 178 (324)
T ss_pred HHHHHHHhccchHHHHHHhhHHHHHHhccCCcc
Confidence 445678999999999999999999998866543
No 77
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=91.69 E-value=0.072 Score=49.09 Aligned_cols=28 Identities=39% Similarity=0.394 Sum_probs=24.8
Q ss_pred eeecccccchhHHHHHHHHHHHHHHhCC
Q 024098 224 NVTSELINGKAAAIGFLLLLDFELLTGK 251 (272)
Q Consensus 224 t~~aE~~ngr~amig~~~~~~~e~~tg~ 251 (272)
-..+|+.+|||||+|++..++.|+++|.
T Consensus 133 ~REaELiHGRwAMLAvaG~lvpEll~G~ 160 (286)
T PLN00187 133 FRECELIHGRWAMLATLGALSVEALTGV 160 (286)
T ss_pred HHHHHhhhhHHHHHHhhchhhHHhccCC
Confidence 3567999999999999999999998764
No 78
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=87.69 E-value=0.3 Score=44.09 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.8
Q ss_pred eeeecccccchhHHHHHHHHHHHHHHh
Q 024098 223 FNVTSELINGKAAAIGFLLLLDFELLT 249 (272)
Q Consensus 223 ft~~aE~~ngr~amig~~~~~~~e~~t 249 (272)
+...+|+.||||||++++..++.|+++
T Consensus 72 ~~r~aEl~hGR~AMla~~G~~~~E~~~ 98 (246)
T PLN00100 72 YLQEAELMNGRWAMAATAGILFTDAVG 98 (246)
T ss_pred HHHHHHhhcchHHHHHHhhhhHHHHhc
Confidence 445679999999999999999999874
No 79
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=86.93 E-value=0.39 Score=43.38 Aligned_cols=30 Identities=27% Similarity=0.072 Sum_probs=25.1
Q ss_pred cceeeecccccchhHHHHHHHHHHHHHHhC
Q 024098 221 FGFNVTSELINGKAAAIGFLLLLDFELLTG 250 (272)
Q Consensus 221 fGft~~aE~~ngr~amig~~~~~~~e~~tg 250 (272)
+.+-..+|+.||||||++++..++.|+++.
T Consensus 79 ~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~ 108 (243)
T PLN00099 79 LERYKESELIHCRWAMLAVPGILVPEALGL 108 (243)
T ss_pred HHHHHHHhccCCcHHHHHHhhHHHHHHhcc
Confidence 344466899999999999999999999653
No 80
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=86.71 E-value=0.58 Score=41.34 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=27.3
Q ss_pred cceeeecccccchhHHHHHHHHHHHHHHhCCcc
Q 024098 221 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGL 253 (272)
Q Consensus 221 fGft~~aE~~ngr~amig~~~~~~~e~~tg~~~ 253 (272)
+-+...+|+.|||+||++++..++.|.++.-|.
T Consensus 72 ~~~~r~~ElkhGR~AMlA~~G~~~~~~~~~pG~ 104 (209)
T PLN00089 72 LPWFRESELKHGRAAMLAVAGFIAPDFVRIPGE 104 (209)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCc
Confidence 345567899999999999999999999875543
No 81
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=81.61 E-value=4.1 Score=32.22 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=42.3
Q ss_pred ccEEeeeCCCCCCCCeEEEEEC---CeEEEEEEeCCEEEEEcCCCcCCcccccCcccccccCCCEEEeCCccceEeC
Q 024098 90 NWVPVVPLSALPKGERRVIIQD---GETILLLWYKDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDL 163 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~---g~~vvl~r~~g~v~A~~n~CpH~g~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl 163 (272)
..+.--++++... .+.+++. |...+.++ +|+++..+..||++-+...|++.. .+..++|-=|.-.-.+
T Consensus 36 ~~~~~i~L~~~~~--~~~i~i~~~~g~~~i~i~-~g~vrv~~s~CpdkiCv~~G~I~~---~G~~IVCLPn~lvI~I 106 (113)
T PF07009_consen 36 KEVKRIPLDKVNE--DKTIEIDGDGGYNTIEIK-DGKVRVIESDCPDKICVKTGWISR---PGQSIVCLPNRLVIEI 106 (113)
T ss_dssp EEEEEEETTS-BS--EEEEEEETTTCEEEEEEE-TTEEEEEEESTSS-HHHHS-SB-S---TT-EEEETTTTEEEEE
T ss_pred EEEEEEECCCCCC--CEEEEEecCCcEEEEEEE-CCEEEEEECCCCCcchhhCCCcCC---CCCEEEEcCCEEEEEE
Confidence 4555556665544 3444442 23333333 899999999999999988899854 6789999777655544
No 82
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=65.59 E-value=38 Score=26.50 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=43.4
Q ss_pred CCCCCCeEEEEE--CCe--EEEEEEe-CCEEEEEcCCCcCCcccccCcccccccCCCEEEeCCccceEeCCC
Q 024098 99 ALPKGERRVIIQ--DGE--TILLLWY-KDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLRT 165 (272)
Q Consensus 99 el~~g~~~~v~~--~g~--~vvl~r~-~g~v~A~~n~CpH~g~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~t 165 (272)
||.+|+...+.+ +|+ .+++++. +|.+.+--+.|-=.++- |... +++.|+|-..|-+|.+.|
T Consensus 1 ~v~Dgklh~y~y~~~G~~vrff~i~~~dg~~~va~daCeiC~~~--GY~q----~g~~lvC~~C~~~~~~~~ 66 (102)
T PF10080_consen 1 DVKDGKLHRYAYTDDGKEVRFFAIKKPDGSYRVAFDACEICGPK--GYYQ----EGDQLVCKNCGVRFNLPT 66 (102)
T ss_pred CccCCcEEEEEEcCCCEEEEEEEEECCCCCEEEEEEeccccCCC--ceEE----ECCEEEEecCCCEEehhh
Confidence 456677666655 443 4555555 99999999988766532 3342 689999999999999864
No 83
>PRK00420 hypothetical protein; Validated
Probab=60.70 E-value=7 Score=31.21 Aligned_cols=34 Identities=24% Similarity=0.603 Sum_probs=26.4
Q ss_pred EcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCc
Q 024098 127 IENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 127 ~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
++..||-.| +|-. + .++.+.||-||-.+..++++
T Consensus 22 l~~~CP~Cg~pLf~--l-----k~g~~~Cp~Cg~~~~v~~~e 56 (112)
T PRK00420 22 LSKHCPVCGLPLFE--L-----KDGEVVCPVHGKVYIVKSDE 56 (112)
T ss_pred ccCCCCCCCCccee--c-----CCCceECCCCCCeeeeccHH
Confidence 567899999 6631 2 36789999999999887665
No 84
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=59.15 E-value=2.9 Score=36.78 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=22.4
Q ss_pred ceeeecccccchhHHHHHHHHHHHHH
Q 024098 222 GFNVTSELINGKAAAIGFLLLLDFEL 247 (272)
Q Consensus 222 Gft~~aE~~ngr~amig~~~~~~~e~ 247 (272)
-+...+|+.|||+||++++..++.|.
T Consensus 62 ~~~r~~ElkhGRlAMlA~~G~~~~~~ 87 (202)
T PLN00120 62 DRLRYVEIKHGRISMLAVVGYLVTEA 87 (202)
T ss_pred HHHHHHHhhcccHHHHhhccceeecc
Confidence 34467899999999999999999886
No 85
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=57.83 E-value=6.1 Score=32.39 Aligned_cols=30 Identities=20% Similarity=0.428 Sum_probs=23.0
Q ss_pred EcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCC
Q 024098 127 IENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 127 ~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
++..||-.| || +. .+|.+.||-||.++...
T Consensus 27 L~~hCp~Cg~PL----F~----KdG~v~CPvC~~~~~~v 57 (131)
T COG1645 27 LAKHCPKCGTPL----FR----KDGEVFCPVCGYREVVV 57 (131)
T ss_pred HHhhCcccCCcc----ee----eCCeEECCCCCceEEEe
Confidence 355799999 67 32 46899999999887763
No 86
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=53.56 E-value=6.7 Score=31.20 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=17.7
Q ss_pred ccccCcccccccCCCEEEeCCccceEeC
Q 024098 136 AYSEGLINAKLTQDGCIVCPTTESTFDL 163 (272)
Q Consensus 136 ~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl 163 (272)
+|..|.+.. ..+...||+||-..+-
T Consensus 75 PL~~G~LC~---RrD~~kCPfHG~IIpR 99 (110)
T PF09740_consen 75 PLPNGGLCP---RRDRKKCPFHGKIIPR 99 (110)
T ss_pred CCCCCCcCC---ccCcccCCCCCcccCC
Confidence 477777643 3467899999987763
No 87
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=52.26 E-value=14 Score=23.07 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=21.8
Q ss_pred CCcCCcc---cccCcccccccCCCEEEeCCccceEeC
Q 024098 130 RSPAEGA---YSEGLINAKLTQDGCIVCPTTESTFDL 163 (272)
Q Consensus 130 ~CpH~g~---L~~G~v~~~~~~~~~i~CP~Hg~~Fdl 163 (272)
.|||-+. +.+..+.+ .+..+.||.-|..|..
T Consensus 4 ~CP~C~~~~~v~~~~~~~---~~~~v~C~~C~~~~~~ 37 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGA---NGGKVRCGKCGHVWYA 37 (38)
T ss_pred ECCCCCCEEEeCHHHcCC---CCCEEECCCCCCEEEe
Confidence 5999995 45444422 3458999999988864
No 88
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=51.53 E-value=10 Score=30.00 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=22.2
Q ss_pred cCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCC
Q 024098 128 ENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 128 ~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
--.||+.|. .- -+ ...-|+||+.|..|.+.
T Consensus 9 KR~Cp~CG~kFY--DL-----nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFY--DL-----NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhc--cC-----CCCCccCCCCCCccCcc
Confidence 457999995 31 23 23569999999999996
No 89
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=45.72 E-value=14 Score=26.16 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=12.5
Q ss_pred CCEEEeCCccceEeC
Q 024098 149 DGCIVCPTTESTFDL 163 (272)
Q Consensus 149 ~~~i~CP~Hg~~Fdl 163 (272)
.-.|.||.||-....
T Consensus 30 PvtI~CP~HG~~~~s 44 (60)
T PF05265_consen 30 PVTIRCPKHGNFTCS 44 (60)
T ss_pred ceEEECCCCCcEEec
Confidence 457999999988875
No 90
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=41.95 E-value=12 Score=31.03 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=27.7
Q ss_pred EEEcCCCcCCcc-cccCcccccccCCCEEEeCCccc-eEeCCCCccccCC
Q 024098 125 FAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTES-TFDLRTGAVRDWY 172 (272)
Q Consensus 125 ~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~-~Fdl~tG~~~~~P 172 (272)
+.-+-.|||.-- +..=.+ .++..||-||+ .=|.+||+.+.-.
T Consensus 3 FGpei~CPhCRq~ipALtL------TDtYLC~rHGaFEAdp~t~eLVHLq 46 (161)
T PF09654_consen 3 FGPEIQCPHCRQTIPALTL------TDTYLCPRHGAFEADPKTGELVHLQ 46 (161)
T ss_pred cCCcCcCchhhcccchhee------cceeeccCccccccCCCCCceEEee
Confidence 344567999762 211133 46889999996 4478899888644
No 91
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=38.57 E-value=16 Score=30.44 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=28.5
Q ss_pred EEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccc-eEeCCCCccccCC
Q 024098 124 VFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTES-TFDLRTGAVRDWY 172 (272)
Q Consensus 124 v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~-~Fdl~tG~~~~~P 172 (272)
++.-+-.|||.- -+..=.+ .++..||-||+ .=|.+||+.+.-.
T Consensus 5 IFGpei~CPhCRQ~ipALtL------TDtYLC~rHGaFEAdP~t~eLVHLq 49 (163)
T TIGR02652 5 IFGPEIRCPHCRQNIPALTL------TDTYLCNRHGAFEADPETGELVHLQ 49 (163)
T ss_pred ccCCcCcCchhhcccchhee------cceeeccCCCccccCCCCCceEEee
Confidence 445566899976 2211133 46889999996 4478899888643
No 92
>PF02959 Tax: HTLV Tax; InterPro: IPR004120 Human T-lymphotropic virus 1 is the etiological agent for adult T-cell leukemia (ATL), as well as for tropical spastic paraparesis (TSP) and HTLV-I associate myelopathy (HAM). A biological understanding of the involvement of HTLV-I and in ATL has focused significantly on the workings of the virally-encoded 40 kDa phospho-oncoprotein, Tat. Tat is a transcriptional activator. Its ability to modulate the expression and function of many cellular genes has been reasoned to be a major contributory mechanism explaining HTLV-I mediated transformation of cells. In activating cellular gene expression, Tat impinges upon several cellular signal-transduction pathways, including those for CREB/ATF and NF-kappaB [].; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 1HHK_C 1AO7_C 2AV7_F.
Probab=38.42 E-value=10 Score=32.62 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=0.0
Q ss_pred CCCcCCcccccCcccccccCCCEEEeCCccceEeCCCCccccCC
Q 024098 129 NRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWY 172 (272)
Q Consensus 129 n~CpH~g~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P 172 (272)
+.||-.|+++.-++.. .+-..+||-|.-.+|..+|++++.+
T Consensus 25 dwcp~~g~~~~~r~~r---~~~~~tc~~h~itw~p~dgr~~~s~ 65 (222)
T PF02959_consen 25 DWCPISGGLCSLRLHR---HALLATCPEHQITWDPIDGRVVGSP 65 (222)
T ss_dssp --------------------------------------------
T ss_pred ccccccCccchhhhhh---hhhhccCccceeeecccCCeeccch
Confidence 4899999766555532 3466899999999998899998754
No 93
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=37.53 E-value=17 Score=29.80 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=12.4
Q ss_pred eCCccceEeCCCCcc
Q 024098 154 CPTTESTFDLRTGAV 168 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~ 168 (272)
-..|||.||++||++
T Consensus 139 l~v~G~~ydi~tG~v 153 (153)
T PF00484_consen 139 LKVHGFVYDIKTGKV 153 (153)
T ss_dssp SEEEEEEEETTTTEE
T ss_pred CEEEEEEEECCCccC
Confidence 457899999999974
No 94
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.21 E-value=41 Score=23.96 Aligned_cols=17 Identities=29% Similarity=0.804 Sum_probs=14.7
Q ss_pred CCCEEEeCCccceEeCC
Q 024098 148 QDGCIVCPTTESTFDLR 164 (272)
Q Consensus 148 ~~~~i~CP~Hg~~Fdl~ 164 (272)
+.+.++|||.+.+|-+.
T Consensus 45 ~~gev~CPYC~t~y~l~ 61 (62)
T COG4391 45 DEGEVVCPYCSTRYRLN 61 (62)
T ss_pred CCCcEecCccccEEEec
Confidence 56889999999999874
No 95
>COG5341 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.33 E-value=1.4e+02 Score=24.39 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=41.5
Q ss_pred EEEEECCeEEEEEEe-CCEEEEEcCCCcCCcccccCcccccccCCCEEEeCCccceEeCC
Q 024098 106 RVIIQDGETILLLWY-KDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 106 ~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
..++-+|...-.... +++++...+.||-+=+.-.|++. + .|++|+|==|.-.-...
T Consensus 62 ~~v~~~~g~~n~vev~g~~IRV~esNcpdqi~Vk~G~i~-k--~GetIVclPh~lvIev~ 118 (132)
T COG5341 62 FDVKENGGFYNKVEVKGNRIRVVESNCPDQICVKTGWIS-K--PGETIVCLPHKLVIEVK 118 (132)
T ss_pred EEEEcCCCceEEEEEcCCEEEEEecCCCcEEEEEeceec-C--CCCEEEEcCCeEEEEEE
Confidence 344445555555554 88999999999999888889983 2 58999998887665553
No 96
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=35.30 E-value=51 Score=23.13 Aligned_cols=32 Identities=16% Similarity=0.256 Sum_probs=23.9
Q ss_pred EcCCCcCCcccccCcccccccCCCEEEeCCccceEeC
Q 024098 127 IENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDL 163 (272)
Q Consensus 127 ~~n~CpH~g~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl 163 (272)
.+-.||+.|....... .+..+.||-.|..+|-
T Consensus 27 TSq~C~~CG~~~~~~~-----~~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRR-----SGRVFTCPNCGFEMDR 58 (69)
T ss_pred CccCccCccccccccc-----ccceEEcCCCCCEECc
Confidence 6888999996322223 4688999999999884
No 97
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=33.27 E-value=39 Score=21.19 Aligned_cols=30 Identities=17% Similarity=0.323 Sum_probs=19.9
Q ss_pred CCcCCcc---cccCcccccccCCCEEEeCCccceEe
Q 024098 130 RSPAEGA---YSEGLINAKLTQDGCIVCPTTESTFD 162 (272)
Q Consensus 130 ~CpH~g~---L~~G~v~~~~~~~~~i~CP~Hg~~Fd 162 (272)
.|||-+. +.+..+.. .+..+.||.-+..|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~---~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPA---GGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHccc---CCcEEECCCCCcEee
Confidence 5888873 44444422 467888988887775
No 98
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=32.06 E-value=20 Score=28.48 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.7
Q ss_pred EeCCccceEeCCCCccc
Q 024098 153 VCPTTESTFDLRTGAVR 169 (272)
Q Consensus 153 ~CP~Hg~~Fdl~tG~~~ 169 (272)
.+.-||+.||++||++.
T Consensus 101 ~l~V~G~~ydi~tG~v~ 117 (119)
T cd00382 101 ELKVHGWVYDIETGKLE 117 (119)
T ss_pred CCEEEEEEEECCCCEEE
Confidence 35799999999999875
No 99
>PLN00416 carbonate dehydratase
Probab=31.86 E-value=22 Score=32.43 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=14.1
Q ss_pred eCCccceEeCCCCcccc
Q 024098 154 CPTTESTFDLRTGAVRD 170 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~~ 170 (272)
.-.|||.||++||++.-
T Consensus 228 l~I~G~~Ydl~TG~v~~ 244 (258)
T PLN00416 228 LAIRGGHYNFVKGTFDL 244 (258)
T ss_pred cEEEEEEEECCCceEEE
Confidence 34899999999998753
No 100
>PRK10437 carbonic anhydrase; Provisional
Probab=31.18 E-value=23 Score=31.52 Aligned_cols=18 Identities=17% Similarity=0.375 Sum_probs=15.0
Q ss_pred eCCccceEeCCCCccccC
Q 024098 154 CPTTESTFDLRTGAVRDW 171 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~~~ 171 (272)
+..|||.||++||++...
T Consensus 174 l~IhG~~Ydl~tG~v~~l 191 (220)
T PRK10437 174 VTIHGWAYGIHDGLLRDL 191 (220)
T ss_pred eEEEEEEEECCCcEEEEe
Confidence 447999999999998653
No 101
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=30.49 E-value=25 Score=29.53 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.9
Q ss_pred eCCccceEeCCCCccc
Q 024098 154 CPTTESTFDLRTGAVR 169 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~ 169 (272)
+..|||.||++||++.
T Consensus 137 l~v~G~vyd~~tG~v~ 152 (154)
T cd03378 137 LKIVGAYYDLDTGKVE 152 (154)
T ss_pred cEEEEEEEECCCcEEE
Confidence 5799999999999863
No 102
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=29.95 E-value=48 Score=20.63 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=15.1
Q ss_pred CCCcCCc-ccccCcccccccCCCEEEeCCccce
Q 024098 129 NRSPAEG-AYSEGLINAKLTQDGCIVCPTTEST 160 (272)
Q Consensus 129 n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~ 160 (272)
+.||+-| +|..-...+. +....+||--||.
T Consensus 1 kfC~~CG~~l~~~ip~gd--~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 1 KFCPQCGGPLERRIPEGD--DRERLVCPACGFI 31 (34)
T ss_dssp -B-TTT--B-EEE--TT---SS-EEEETTTTEE
T ss_pred CccccccChhhhhcCCCC--CccceECCCCCCE
Confidence 4699999 5755444221 3467999987775
No 103
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=28.99 E-value=1.3e+02 Score=26.16 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=34.8
Q ss_pred CCCCCCCeEEEEE--CCeEEEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccce
Q 024098 98 SALPKGERRVIIQ--DGETILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTEST 160 (272)
Q Consensus 98 ~el~~g~~~~v~~--~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~ 160 (272)
+++..|+....++ .+.++.|.-.++.+-.+.++|+-.+ .|- . .+..+.||-.|..
T Consensus 117 d~f~~GDivrA~Vis~~~~~~Lst~~~dlGVI~A~CsrC~~~L~---~-----~~~~l~Cp~Cg~t 174 (188)
T COG1096 117 DAFRIGDIVRARVISTGDPIQLSTKGNDLGVIYARCSRCRAPLV---K-----KGNMLKCPNCGNT 174 (188)
T ss_pred cccccccEEEEEEEecCCCeEEEecCCcceEEEEEccCCCcceE---E-----cCcEEECCCCCCE
Confidence 6667788666554 2355555544566666666777766 352 2 4688999987754
No 104
>PLN02755 complex I subunit
Probab=28.89 E-value=26 Score=25.59 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=31.8
Q ss_pred cccchhHHHHHHHHHHHHHHhCCcccccccchhHHH
Q 024098 229 LINGKAAAIGFLLLLDFELLTGKGLLKGTGFLDFIY 264 (272)
Q Consensus 229 ~~ngr~amig~~~~~~~e~~tg~~~~~~~g~~~~~~ 264 (272)
.|..|-+++-++.++++=.+.|+|+..-+.++|-.+
T Consensus 28 RWT~Rt~~i~~ifgv~VP~liy~giv~eF~~~d~~~ 63 (71)
T PLN02755 28 RWTRRNLAVVGIFGIAVPILVYKGIVREFHMQDEDA 63 (71)
T ss_pred ecccchhhhhhhhhhhhhHHhhhhhhhhhcccchhc
Confidence 588999999999999999999999999887777553
No 105
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=28.87 E-value=26 Score=30.36 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=13.9
Q ss_pred eCCccceEeCCCCccc
Q 024098 154 CPTTESTFDLRTGAVR 169 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~ 169 (272)
.-.|||.||+.||++.
T Consensus 173 l~i~G~~Ydi~tG~v~ 188 (190)
T cd00884 173 LSLHGWYYDIETGELY 188 (190)
T ss_pred cEEEEEEEECCceEEE
Confidence 5589999999999874
No 106
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=27.43 E-value=31 Score=28.25 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=14.3
Q ss_pred EeCCccceEeCCCCccc
Q 024098 153 VCPTTESTFDLRTGAVR 169 (272)
Q Consensus 153 ~CP~Hg~~Fdl~tG~~~ 169 (272)
..+-|||.||++||++.
T Consensus 124 ~i~V~G~~ydi~tG~v~ 140 (142)
T cd03379 124 DVPVHGYVYDVKTGKLT 140 (142)
T ss_pred CCEEEEEEEECCCCEEE
Confidence 34689999999999864
No 107
>PRK15219 carbonic anhydrase; Provisional
Probab=27.37 E-value=28 Score=31.47 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=14.2
Q ss_pred EeCCccceEeCCCCccc
Q 024098 153 VCPTTESTFDLRTGAVR 169 (272)
Q Consensus 153 ~CP~Hg~~Fdl~tG~~~ 169 (272)
.+..|||.||++||++.
T Consensus 226 ~l~I~G~~Ydl~tG~V~ 242 (245)
T PRK15219 226 KIKIVGSMYNLNGGKVE 242 (245)
T ss_pred CcEEEEEEEECCCeEEE
Confidence 35589999999999863
No 108
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=26.01 E-value=31 Score=29.49 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.5
Q ss_pred EeCCccceEeCCCCccc
Q 024098 153 VCPTTESTFDLRTGAVR 169 (272)
Q Consensus 153 ~CP~Hg~~Fdl~tG~~~ 169 (272)
.+..|||-||++||++.
T Consensus 164 ~l~I~G~~ydi~tG~v~ 180 (182)
T cd00883 164 ELEVHGWVYDLGDGLLR 180 (182)
T ss_pred CeEEEEEEEEcCccEEE
Confidence 35799999999999875
No 109
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=24.07 E-value=37 Score=29.89 Aligned_cols=16 Identities=19% Similarity=0.303 Sum_probs=13.5
Q ss_pred CCccceEeCCCCcccc
Q 024098 155 PTTESTFDLRTGAVRD 170 (272)
Q Consensus 155 P~Hg~~Fdl~tG~~~~ 170 (272)
..|||.||++||+...
T Consensus 179 ~vhG~~y~i~~G~l~~ 194 (207)
T COG0288 179 AVHGWVYDIETGRLYV 194 (207)
T ss_pred EEEEEEEecCCceEEE
Confidence 3799999999999653
No 110
>PF15616 TerY-C: TerY-C metal binding domain
Probab=22.66 E-value=64 Score=26.45 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=21.3
Q ss_pred CCCcCCcc---c---ccCcccccccCCCEEEeCCccceEeC
Q 024098 129 NRSPAEGA---Y---SEGLINAKLTQDGCIVCPTTESTFDL 163 (272)
Q Consensus 129 n~CpH~g~---L---~~G~v~~~~~~~~~i~CP~Hg~~Fdl 163 (272)
.-|||.|. + .=|.+.-. ...+.++|||-|..=..
T Consensus 78 PgCP~CGn~~~fa~C~CGkl~Ci-~g~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVCGCGKLFCI-DGEGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCcChhcEEEecCCCEEEe-CCCCCEECCCCCCeeee
Confidence 78999993 2 12444321 13568999999866444
No 111
>PRK13747 putative mercury resistance protein; Provisional
Probab=22.37 E-value=26 Score=25.86 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=7.3
Q ss_pred CEEEeCCcc
Q 024098 150 GCIVCPTTE 158 (272)
Q Consensus 150 ~~i~CP~Hg 158 (272)
..|+||||=
T Consensus 24 AvLTCPCHL 32 (78)
T PRK13747 24 AVLTCPCHL 32 (78)
T ss_pred HHhcCcchH
Confidence 469999994
No 112
>PLN03014 carbonic anhydrase
Probab=21.66 E-value=44 Score=31.86 Aligned_cols=17 Identities=24% Similarity=0.519 Sum_probs=14.6
Q ss_pred CCccceEeCCCCccccC
Q 024098 155 PTTESTFDLRTGAVRDW 171 (272)
Q Consensus 155 P~Hg~~Fdl~tG~~~~~ 171 (272)
-.|||.||++||++..+
T Consensus 308 ~I~G~~YDi~TG~V~~l 324 (347)
T PLN03014 308 ALKGGYYDFVKGAFELW 324 (347)
T ss_pred EEEEEEEECCCceEEEe
Confidence 38999999999998654
No 113
>PF04798 Baculo_19: Baculovirus 19 kDa protein conserved region; InterPro: IPR006883 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf96; it is a family of uncharacterised viral proteins.
Probab=21.55 E-value=2.3e+02 Score=23.73 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=32.7
Q ss_pred cEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcC-----CCcCCc-c
Q 024098 91 WVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIEN-----RSPAEG-A 136 (272)
Q Consensus 91 W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n-----~CpH~g-~ 136 (272)
.+.|-+.+--..++ +-+.+.-+.++|+..+|.+|.+-+ .||+.. +
T Consensus 25 ~I~VyD~s~~~~~d-RLfvI~PenvvlYN~~G~lYyYlegss~~~CP~nE~a 75 (146)
T PF04798_consen 25 YIEVYDRSTPSDND-RLFVIEPENVVLYNTAGTLYYYLEGSSSVFCPPNEFA 75 (146)
T ss_pred EEEEEEcCCCCCCc-eEEEEcCceEEEEECCCeEEEEEeccccccCCCCceE
Confidence 45555554444443 567788899999999999999665 599777 5
No 114
>PLN03019 carbonic anhydrase
Probab=21.25 E-value=45 Score=31.56 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=15.4
Q ss_pred eCCccceEeCCCCccccCC
Q 024098 154 CPTTESTFDLRTGAVRDWY 172 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~~~P 172 (272)
.-.|||.||++||++.-+-
T Consensus 301 L~I~G~~YDl~TG~V~~~~ 319 (330)
T PLN03019 301 LALKGGYYDFVNGSFELWE 319 (330)
T ss_pred cEEEEEEEECCCceEEEEc
Confidence 3489999999999987543
No 115
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=20.86 E-value=1.9e+02 Score=16.89 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=14.7
Q ss_pred EEECCeEEEEEEeCCEEEEEcCC
Q 024098 108 IIQDGETILLLWYKDEVFAIENR 130 (272)
Q Consensus 108 v~~~g~~vvl~r~~g~v~A~~n~ 130 (272)
+..++...++...+|+++++...
T Consensus 4 ia~G~~ht~al~~~g~v~~wG~n 26 (30)
T PF13540_consen 4 IACGGYHTCALTSDGEVYCWGDN 26 (30)
T ss_dssp EEEESSEEEEEE-TTEEEEEE--
T ss_pred EEecCCEEEEEEcCCCEEEEcCC
Confidence 44455666677779999998764
Done!