Query 024098
Match_columns 272
No_of_seqs 362 out of 2042
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 18:10:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024098.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024098hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qpz_A Naphthalene 1,2-dioxyge 99.9 3.4E-25 1.1E-29 172.1 12.0 97 89-202 2-99 (103)
2 3dqy_A Toluene 1,2-dioxygenase 99.9 1.7E-25 5.9E-30 174.7 9.6 99 90-205 1-100 (106)
3 1fqt_A Rieske-type ferredoxin 99.9 6.6E-25 2.3E-29 173.1 10.6 100 89-205 4-105 (112)
4 3gce_A Ferredoxin component of 99.9 7E-25 2.4E-29 175.6 10.8 98 90-204 10-110 (121)
5 2i7f_A Ferredoxin component of 99.9 5E-25 1.7E-29 172.6 8.8 99 90-205 3-103 (108)
6 2de6_D Ferredoxin component of 99.9 1.7E-24 5.6E-29 171.9 10.8 99 89-204 3-103 (115)
7 1vm9_A Toluene-4-monooxygenase 99.9 3.2E-24 1.1E-28 168.8 10.7 99 90-206 1-102 (111)
8 3c0d_A Putative nitrite reduct 99.9 4E-24 1.4E-28 170.7 9.7 103 88-205 3-109 (119)
9 4aiv_A Probable nitrite reduct 99.9 4.4E-24 1.5E-28 170.8 9.0 101 89-202 8-112 (119)
10 2jo6_A Nitrite reductase [NAD( 99.9 2.7E-23 9.4E-28 164.0 10.4 100 90-204 6-110 (113)
11 2jza_A Nitrite reductase [NAD( 99.9 7.2E-23 2.5E-27 165.9 9.7 102 90-206 3-109 (130)
12 3d89_A Rieske domain-containin 99.9 9.4E-23 3.2E-27 170.1 5.6 118 86-206 12-134 (157)
13 3gcf_A Terminal oxygenase comp 99.8 2E-20 7E-25 176.5 11.4 114 86-206 30-144 (394)
14 3gkq_A Terminal oxygenase comp 99.8 2.4E-20 8.3E-25 175.6 11.1 114 86-206 27-141 (389)
15 2de6_A Terminal oxygenase comp 99.8 3.1E-20 1.1E-24 175.6 11.3 114 86-206 24-138 (392)
16 1rie_A Rieske iron-sulfur prot 99.8 4.3E-20 1.5E-24 149.5 10.4 83 89-178 4-114 (129)
17 3gke_A DDMC; rieske cluster, n 99.8 2.1E-20 7.3E-25 174.4 8.9 108 87-207 5-115 (349)
18 2zyl_A Possible oxidoreductase 99.8 3.9E-20 1.3E-24 174.8 10.5 109 86-206 21-131 (386)
19 1z01_A 2-OXO-1,2-dihydroquinol 99.8 1.2E-19 4E-24 174.5 11.7 114 86-206 39-153 (446)
20 2gbw_A Biphenyl 2,3-dioxygenas 99.8 7.4E-20 2.5E-24 176.1 9.3 133 66-207 17-152 (454)
21 1g8k_B Arsenite oxidase; molyb 99.8 8.5E-20 2.9E-24 148.5 8.1 84 89-178 6-103 (133)
22 3vca_A Ring-hydroxylating diox 99.8 6.2E-20 2.1E-24 174.9 7.1 126 68-207 25-154 (412)
23 3n0q_A Putative aromatic-ring 99.8 7.3E-20 2.5E-24 174.2 7.3 127 67-207 22-152 (409)
24 2bmo_A Oxygenase-alpha NBDO; n 99.8 5E-20 1.7E-24 176.9 5.3 131 67-206 17-151 (447)
25 4aay_B AROB; oxidoreductase, r 99.8 3E-19 1E-23 151.7 8.1 85 88-178 48-146 (175)
26 3gzx_A Biphenyl dioxygenase su 99.8 2.5E-19 8.5E-24 172.8 7.1 135 64-207 35-178 (457)
27 1uli_A Biphenyl dioxygenase la 99.8 2E-19 6.8E-24 173.5 6.2 129 68-206 37-168 (460)
28 2b1x_A Naphthalene dioxygenase 99.8 5.3E-19 1.8E-23 170.9 8.2 101 66-175 25-128 (470)
29 1rfs_A Rieske protein; iron-su 99.7 5.7E-19 1.9E-23 144.7 4.6 99 86-203 17-121 (139)
30 3cx5_E Cytochrome B-C1 complex 99.7 4E-17 1.4E-21 139.8 9.4 83 88-178 60-171 (185)
31 2qjy_C Ubiquinol-cytochrome C 99.7 8.9E-17 3E-21 137.9 10.9 84 89-178 47-172 (187)
32 1pp9_E Ubiquinol-cytochrome C 99.7 5.2E-17 1.8E-21 140.2 9.2 80 93-178 74-181 (196)
33 2nwf_A Ubiquinol-cytochrome C 99.7 1.5E-16 5E-21 130.7 9.9 78 95-178 6-126 (141)
34 3azc_A Cytochrome B6-F complex 99.5 5.1E-18 1.7E-22 138.1 0.0 98 88-204 13-117 (133)
35 1nyk_A Rieske iron-sulfur prot 99.6 1.4E-16 4.7E-21 134.1 4.6 92 96-204 26-145 (165)
36 1vf5_D Rieske iron-sulfur prot 99.6 3.4E-16 1.1E-20 133.3 2.2 75 97-178 70-149 (179)
37 1jm1_A Rieske iron-sulfur prot 99.4 1.4E-14 4.7E-19 125.8 -0.1 73 106-178 56-149 (204)
38 2bhw_A Chlorophyll A-B binding 97.1 0.00011 3.9E-09 64.5 1.4 35 223-257 175-209 (232)
39 3pl9_A Chlorophyll A-B binding 97.0 0.00016 5.4E-09 63.7 1.2 35 223-257 192-226 (243)
40 2wsc_2 LHCA2, type II chloroph 96.9 7.1E-05 2.4E-09 67.0 -1.7 38 221-258 214-251 (269)
41 2wsc_3 LHCA3, type II chloroph 96.9 0.00012 4.2E-09 65.7 -0.3 35 223-257 223-257 (276)
42 2wsc_1 AT3G54890, LHCA1; photo 96.5 0.00038 1.3E-08 61.4 -0.5 35 224-258 187-222 (241)
43 2wsc_4 Chlorophyll A-B binding 95.7 0.00064 2.2E-08 60.3 -2.9 37 219-255 86-122 (251)
44 2wsc_4 Chlorophyll A-B binding 95.6 0.002 6.9E-08 57.1 -0.0 32 225-257 201-232 (251)
45 2wsc_3 LHCA3, type II chloroph 94.1 0.00092 3.1E-08 60.0 -6.4 33 222-254 97-129 (276)
46 2wsc_2 LHCA2, type II chloroph 93.4 0.015 5E-07 52.0 0.0 35 220-254 98-132 (269)
47 3pl9_A Chlorophyll A-B binding 92.7 0.035 1.2E-06 48.8 1.5 30 221-250 89-118 (243)
48 2bhw_A Chlorophyll A-B binding 89.7 0.12 4E-06 45.2 1.7 32 221-252 58-89 (232)
49 4esn_A Hypothetical protein; p 74.1 5.9 0.0002 30.0 5.4 55 106-164 38-92 (104)
50 3ld7_A LIN0431 protein; DUF131 72.9 6.8 0.00023 29.4 5.5 41 121-164 49-89 (101)
51 1m1h_A Transcription antitermi 68.6 11 0.00036 33.0 6.5 39 121-163 90-128 (248)
52 2kpp_A LIN0431 protein; soluti 60.8 18 0.0006 27.8 5.8 41 121-164 49-89 (114)
53 2wsc_1 AT3G54890, LHCA1; photo 54.3 0.26 8.9E-06 43.2 -6.5 28 222-249 81-108 (241)
54 3las_A Putative carbonic anhyd 43.5 7.5 0.00026 31.8 1.1 16 155-170 149-164 (166)
55 1ylk_A Hypothetical protein RV 36.6 10 0.00036 31.0 0.9 17 154-170 153-169 (172)
56 3qy1_A Carbonic anhydrase; str 36.1 11 0.00036 32.4 0.9 17 154-170 177-193 (223)
57 1g5c_A Beta-carbonic anhydrase 35.2 11 0.00039 30.6 0.9 17 153-169 148-164 (170)
58 1ekj_A Beta-carbonic anhydrase 34.2 12 0.00043 31.7 1.1 16 154-169 192-207 (221)
59 1ym3_A Carbonic anhydrase (car 34.0 12 0.00042 31.7 1.0 17 154-170 188-204 (215)
60 3ucj_A Carbonic anhydrase; alp 32.8 14 0.00046 31.9 1.1 16 155-170 182-197 (227)
61 3e3i_A Carbonic anhydrase 2, b 32.8 13 0.00044 32.1 0.9 17 154-170 174-190 (229)
62 2w3q_A Carbonic anhydrase 2; l 32.3 14 0.00048 32.0 1.1 19 153-171 208-226 (243)
63 3eyx_A Carbonic anhydrase; ros 31.7 14 0.00047 31.6 0.9 17 154-170 190-206 (216)
64 2pk7_A Uncharacterized protein 30.9 35 0.0012 23.7 2.8 34 130-169 10-44 (69)
65 2jr6_A UPF0434 protein NMA0874 26.1 40 0.0014 23.3 2.4 34 130-169 10-44 (68)
66 2hf1_A Tetraacyldisaccharide-1 26.1 39 0.0013 23.4 2.3 34 130-169 10-44 (68)
67 2js4_A UPF0434 protein BB2007; 26.0 37 0.0013 23.6 2.2 34 130-169 10-44 (70)
68 2kn9_A Rubredoxin; metalloprot 25.7 91 0.0031 22.3 4.3 23 148-170 24-46 (81)
69 2jny_A Uncharacterized BCR; st 25.2 41 0.0014 23.2 2.3 34 130-169 12-46 (67)
70 3teo_A Carbon disulfide hydrol 22.5 29 0.00099 29.3 1.3 17 154-170 168-184 (204)
71 2jrr_A Uncharacterized protein 20.8 60 0.0021 22.5 2.4 20 148-167 37-56 (67)
No 1
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.92 E-value=3.4e-25 Score=172.12 Aligned_cols=97 Identities=21% Similarity=0.336 Sum_probs=86.2
Q ss_pred CccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCc
Q 024098 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
+.|+.|+.++||++|+.+.+.++|++++|+|.+|+++|++|.|||+| +|++|.+ +++.|+||||||+||++||+
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~Fd~~~G~ 76 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYEVEGEIYATDNLCTHGSARMSDGYL-----EGREIECPLHQGRFDVCTGK 76 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEEETTEEEEEESBCSSSSCBGGGSEE-----ETTEEECTTTTCEEETTTCC
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEEECCEEEEECCcCCCCCCCCCCCeE-----eCCEEECCCCCCEEeCCCCC
Confidence 57999999999999999999999999999999999999999999999 5999988 57899999999999999999
Q ss_pred cccCCCCCCcccCCcCCCCcceEEeecccCCCccc
Q 024098 168 VRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTA 202 (272)
Q Consensus 168 ~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~ 202 (272)
|+.+|+..++ ..|+++...|.++
T Consensus 77 ~~~~P~~~~L------------~~~~v~~~~g~v~ 99 (103)
T 2qpz_A 77 ALCAPVTQNI------------KTYPVKIENLRVM 99 (103)
T ss_dssp EEETTCCSCC------------CEECEEEETTEEE
T ss_pred EeCCCCCCCC------------CEEeEEEECCEEE
Confidence 9998865443 4667777777654
No 2
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.92 E-value=1.7e-25 Score=174.74 Aligned_cols=99 Identities=23% Similarity=0.401 Sum_probs=88.2
Q ss_pred ccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCcc
Q 024098 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAV 168 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~ 168 (272)
+|+.|+.++||++|+.+.+.++|++|+|+|.+|+++|++|.|||+| +|++|.+ +++.|+||||||+||++||+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~Fdl~~G~~ 75 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCNVDGEFFAVQDTCTHGDWALSDGYL-----DGDIVECTLHFGKFCVRTGKV 75 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEEETTEEEEEESBCSSSSCBGGGSEE-----ETTEEECTTTCCEEETTTCCE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEECCEEEEEeCcCCCCCCCCcCcEE-----eCCEEECCCCCCEEeCCCCCE
Confidence 6999999999999999999999999999999999999999999999 5999988 578999999999999999999
Q ss_pred ccCCCCCCcccCCcCCCCcceEEeecccCCCcccccc
Q 024098 169 RDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDV 205 (272)
Q Consensus 169 ~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv 205 (272)
+.+|+..++ ..|+++..+|.++.+.
T Consensus 76 ~~~P~~~~L------------~~~~v~~~~g~v~v~~ 100 (106)
T 3dqy_A 76 KALPACKPI------------KVFPIKVEGDEVHVDL 100 (106)
T ss_dssp EETTCCSCC------------CEECEEEETTEEEECG
T ss_pred eCCCCCCCc------------cEEEEEEECCEEEEEc
Confidence 999875444 4678888888775544
No 3
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.92 E-value=6.6e-25 Score=173.15 Aligned_cols=100 Identities=20% Similarity=0.375 Sum_probs=86.6
Q ss_pred CccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCc-ccccC-cccccccCCCEEEeCCccceEeCCCC
Q 024098 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEG-AYSEG-LINAKLTQDGCIVCPTTESTFDLRTG 166 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G-~v~~~~~~~~~i~CP~Hg~~Fdl~tG 166 (272)
+.|+.|+.++||++|+.+.+.++|++|+|+|.+|+++|++|.|||+| +|++| .+ +++.|+||||||+||++||
T Consensus 4 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~~g~~~A~~n~CpH~g~~L~~g~~~-----~~~~i~CP~Hg~~Fd~~tG 78 (112)
T 1fqt_A 4 MKFTRVCDRRDVPEGEALKVESGGTSVAIFNVDGELFATQDRCTHGDWSLSDGGYL-----EGDVVECSLHMGKFCVRTG 78 (112)
T ss_dssp CCCEEEEEGGGSCTTCEEEEEETTEEEEEEEETTEEEEEESBCTTSSCBSSTTCCE-----ETTEEECTTTCCEEETTTC
T ss_pred cceEEeEeHHHCCCCCeEEEEECCEEEEEEEECCEEEEEECCCCCCCcCCCCCCEE-----cCCEEECCCCCCEEeCCCC
Confidence 46999999999999999999999999999999999999999999999 59988 77 5789999999999999999
Q ss_pred ccccCCCCCCcccCCcCCCCcceEEeecccCCCcccccc
Q 024098 167 AVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDV 205 (272)
Q Consensus 167 ~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv 205 (272)
+|+.+|+..++ ..|+++...|.++.+.
T Consensus 79 ~~~~~P~~~~L------------~~~~v~~~~g~v~v~~ 105 (112)
T 1fqt_A 79 KVKSPPPCEAL------------KIFPIRIEDNDVLVDF 105 (112)
T ss_dssp CEEESSCCSCC------------CBCCEEEETTEEEECT
T ss_pred cEeCCCCCCCc------------cEEEEEEECCEEEEEe
Confidence 99999875444 3456666677665443
No 4
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.92 E-value=7e-25 Score=175.63 Aligned_cols=98 Identities=24% Similarity=0.268 Sum_probs=86.7
Q ss_pred ccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCc-ccccC--cccccccCCCEEEeCCccceEeCCCC
Q 024098 90 NWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEG-AYSEG--LINAKLTQDGCIVCPTTESTFDLRTG 166 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G--~v~~~~~~~~~i~CP~Hg~~Fdl~tG 166 (272)
+|+.|+.++||++|+.+.+.++|++|+|+|.+|+++|++|.|||+| +|++| .+ +++.|+||||||+||++||
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~g~~~A~~n~CpH~g~~L~~G~~~~-----~~~~i~CP~Hg~~Fdl~tG 84 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRDGDSVYAISNLCSHAEAYLDMGVFHA-----ESLEIECPLHVGRFDVRTG 84 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEETTEEEEEESBCSSSSCBGGGSEEET-----TTTEEECTTTCCEEETTTC
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEECCEEEEEeCcCCCCCCCCCCCceee-----cCCEEEcCCCCCEEcCCCc
Confidence 5999999999999999999999999999999999999999999999 59999 76 6789999999999999999
Q ss_pred ccccCCCCCCcccCCcCCCCcceEEeecccCCCccccc
Q 024098 167 AVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATD 204 (272)
Q Consensus 167 ~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sd 204 (272)
+|+.+|+..+| ..|+++.++|.++..
T Consensus 85 ~~~~~P~~~~L------------~~~~v~v~~g~V~v~ 110 (121)
T 3gce_A 85 APTALPCVLPV------------RAYDVVVDGTEILVA 110 (121)
T ss_dssp CEEETTCCSCC------------CBCCEEEETTEEEEC
T ss_pred cEeCCCCcCCc------------ceEEEEEECCEEEEE
Confidence 99999976544 356677777766433
No 5
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.91 E-value=5e-25 Score=172.64 Aligned_cols=99 Identities=20% Similarity=0.355 Sum_probs=87.0
Q ss_pred ccEEeeeCCCCCCCCeEEEEECCeE-EEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCc
Q 024098 90 NWVPVVPLSALPKGERRVIIQDGET-ILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~g~~-vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
+|+.|+.++||++|+.+.+.++|++ ++|+|.+|+++|++|.|||+| +|++|.+ +++.|+||||||+||++||+
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~Fdl~tG~ 77 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNVDGEVFVTDNLCTHGNAMLTDGYQ-----DGTIIECPFHGGSFDIATGA 77 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEETTEEEEEESBCSSSSCBGGGSEE-----ETTEEECSSTTCEEETTTCC
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEECCEEEEEeCcCCCCCCCCCCCEE-----eCCEEEcCCCCCEEeCCCcC
Confidence 5999999999999999999999999 999999999999999999999 5999988 57899999999999999999
Q ss_pred cccCCCCCCcccCCcCCCCcceEEeecccCCCcccccc
Q 024098 168 VRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDV 205 (272)
Q Consensus 168 ~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv 205 (272)
|+.+|+..++ ..|+++...|.++.+.
T Consensus 78 ~~~~P~~~~L------------~~~~v~~~~g~v~v~~ 103 (108)
T 2i7f_A 78 AKAFPCQIPI------------KTYPVTIEDGWVCIDQ 103 (108)
T ss_dssp BCSTTCCSCC------------CEECEEEETTEEEEEC
T ss_pred EeCCCCCCCc------------cEEeEEEECCEEEEeC
Confidence 9998865443 4677777777765443
No 6
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.91 E-value=1.7e-24 Score=171.91 Aligned_cols=99 Identities=22% Similarity=0.343 Sum_probs=87.3
Q ss_pred CccEEeeeCCCCCCCCeEEEEECCe-EEEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCC
Q 024098 89 ENWVPVVPLSALPKGERRVIIQDGE-TILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~~g~-~vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG 166 (272)
+.|+.|+.++||++|+.+.+.++|+ +|+|+|.+|+++|++|.|||+| +|++|.+ +++.|+||||||+||++||
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~~g~~~A~~n~CpH~g~~L~~g~~-----~~~~i~CP~Hg~~Fdl~tG 77 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRVGDQFYATEDTCTHGIASLSEGTL-----DGDVIECPFHGGAFNVCTG 77 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEETTEEEEEESBCTTSSCBGGGSEE-----ETTEEECTTTCCEEETTTC
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEECCEEEEEeCCCCCCCCCCcCCEE-----eCCEEECCCCCCEEcCCCc
Confidence 4699999999999999999999999 9999999999999999999999 5999988 5789999999999999999
Q ss_pred ccccCCCCCCcccCCcCCCCcceEEeecccCCCccccc
Q 024098 167 AVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATD 204 (272)
Q Consensus 167 ~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sd 204 (272)
+|+.+|+..+| ..|+++...|.++..
T Consensus 78 ~~~~~P~~~~L------------~~~~v~~~~g~V~v~ 103 (115)
T 2de6_D 78 MPASSPCTVPL------------GVFEVEVKEGEVYVA 103 (115)
T ss_dssp CEEETTCCSCC------------CEEEEEESSSEEEEE
T ss_pred CEeCCCCcCCC------------CEEEEEEECCEEEEe
Confidence 99998865433 467888888877543
No 7
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.91 E-value=3.2e-24 Score=168.82 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=85.9
Q ss_pred ccEEeeeCCCCCCCCeEEEEE-CCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCC
Q 024098 90 NWVPVVPLSALPKGERRVIIQ-DGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTG 166 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~-~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG 166 (272)
+|+.|+.++||++|+.+.+.+ +|++++|+|. +|+++|++|.|||+| +|++|.+ +++.|+||||||+||++||
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~-----~~~~i~Cp~Hg~~Fd~~tG 75 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSY-----EGGVITCRAHLWTFNDGTG 75 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEE-----ETTEEECTTTCCEEETTTC
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceE-----cCCEEEcCCCCCEEeCCCc
Confidence 599999999999999999999 9999999999 999999999999999 5999988 5789999999999999999
Q ss_pred ccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 167 AVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 167 ~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
+|+. |+..+ +..|+++...|.++....
T Consensus 76 ~~~~-p~~~~------------L~~~~v~~~~g~v~v~~~ 102 (111)
T 1vm9_A 76 HGIN-PDDAA------------LAEYPVEVKGDDIYVSTK 102 (111)
T ss_dssp BBSS-SSSCB------------CCEECEEEETTEEEECCT
T ss_pred cCCC-CCcCC------------cCEEEEEEECCEEEEecc
Confidence 9998 54333 346777777887755443
No 8
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.90 E-value=4e-24 Score=170.69 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=87.4
Q ss_pred CCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc--cccCcccccccCCC-EEEeCCccceEeC
Q 024098 88 GENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA--YSEGLINAKLTQDG-CIVCPTTESTFDL 163 (272)
Q Consensus 88 ~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~--L~~G~v~~~~~~~~-~i~CP~Hg~~Fdl 163 (272)
.+.|+.|+.++||++|+.+.+.++|++|+|+|. +|+++|++|.|||+|+ |++|.+.+. ++. .|+||||||+||+
T Consensus 3 ~~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~--~g~~~i~CP~Hg~~Fdl 80 (119)
T 3c0d_A 3 ALTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDI--NGEMCVASPLYKQHFSL 80 (119)
T ss_dssp -CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEES--SSSEEEECTTTCCEEET
T ss_pred CCccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCC--CCCeEEECCCCCCEEEC
Confidence 468999999999999999999999999999999 9999999999999883 999988421 122 8999999999999
Q ss_pred CCCccccCCCCCCcccCCcCCCCcceEEeecccCCCcccccc
Q 024098 164 RTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDV 205 (272)
Q Consensus 164 ~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv 205 (272)
+||+|+.+|+ . .+..|+++...|.++...
T Consensus 81 ~tG~~~~~P~-~------------~l~~~~v~v~~g~V~v~~ 109 (119)
T 3c0d_A 81 KSGQCLEDEA-H------------CLKTWRVTVDDNQVCYLA 109 (119)
T ss_dssp TTCBBSSCTT-C------------BCCEECEEESSSEEEEEC
T ss_pred CCCcCCCCCC-c------------eeeEEEEEEECCEEEEEe
Confidence 9999999874 2 345788888888775443
No 9
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.90 E-value=4.4e-24 Score=170.82 Aligned_cols=101 Identities=20% Similarity=0.280 Sum_probs=80.7
Q ss_pred CccEEeeeCCCCCCCCeEEEEE-CCeEEEEEEe-CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEeCCccceEeCCC
Q 024098 89 ENWVPVVPLSALPKGERRVIIQ-DGETILLLWY-KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRT 165 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~-~g~~vvl~r~-~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~t 165 (272)
.+|++||.++||++|+.+.+.+ +|++|+|+|. +|++||++|.|||+| +|..|.+.+....+..|+||||||+||++|
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t 87 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD 87 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence 4799999999999999888887 5799999998 899999999999999 565544322111234699999999999999
Q ss_pred CccccCCCCCCcccCCcCCCCcceEEeecc-cCCCccc
Q 024098 166 GAVRDWYPNNPVMEGGASSDASAEIVFSGK-AQPGVTA 202 (272)
Q Consensus 166 G~~~~~P~~~pl~~~g~~~~~~~v~vFp~k-~~~G~i~ 202 (272)
|+|+..|.. .+..||++ +.+|.++
T Consensus 88 G~~~~~p~~-------------~l~~ypv~ve~dG~V~ 112 (119)
T 4aiv_A 88 GSCLDDPRV-------------SVPVYPARVTPEGRIQ 112 (119)
T ss_dssp CBBSSCTTC-------------BCCEECEEECTTSEEE
T ss_pred CcCcCCCCC-------------ccceEEEEEEeCCEEE
Confidence 999987742 34678887 4467664
No 10
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.89 E-value=2.7e-23 Score=163.98 Aligned_cols=100 Identities=19% Similarity=0.306 Sum_probs=85.0
Q ss_pred ccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CC-EEEEEcCCCcCCc-c-cccCcccccccCCC-EEEeCCccceEeCC
Q 024098 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY-KD-EVFAIENRSPAEG-A-YSEGLINAKLTQDG-CIVCPTTESTFDLR 164 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g-~v~A~~n~CpH~g-~-L~~G~v~~~~~~~~-~i~CP~Hg~~Fdl~ 164 (272)
+|+.|+.++||++|+.+.+.++|++++|+|. +| +++|++|.|||+| . |++|.+.+. ++. .|+||||||+||++
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~--~g~~~i~CP~Hg~~Fd~~ 83 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEH--QGELWVASPLKKQRFRLS 83 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEE--TTEEEEEETTTTEEEETT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEecc--CCCcEEECCCCCCEEeCC
Confidence 5999999999999999999999999999999 99 6999999999998 3 999988421 133 89999999999999
Q ss_pred CCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccc
Q 024098 165 TGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATD 204 (272)
Q Consensus 165 tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sd 204 (272)
||+|+.+|+ . .+..|+++...|.++.+
T Consensus 84 tG~~~~~P~-~------------~l~~~~v~v~~g~V~v~ 110 (113)
T 2jo6_A 84 DGLCMEDEQ-F------------SVKHYEARVKDGVVQLR 110 (113)
T ss_dssp TTEETTTTT-T------------CCCEEEEEEETTEEEEE
T ss_pred CccCCCCCc-c------------cccEEeEEEECCEEEEE
Confidence 999999874 1 34578888888876543
No 11
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.88 E-value=7.2e-23 Score=165.93 Aligned_cols=102 Identities=20% Similarity=0.338 Sum_probs=86.2
Q ss_pred ccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CC-EEEEEcCCCcCCc-c-cccCcccccccCC-CEEEeCCccceEeCC
Q 024098 90 NWVPVVPLSALPKGERRVIIQDGETILLLWY-KD-EVFAIENRSPAEG-A-YSEGLINAKLTQD-GCIVCPTTESTFDLR 164 (272)
Q Consensus 90 ~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g-~v~A~~n~CpH~g-~-L~~G~v~~~~~~~-~~i~CP~Hg~~Fdl~ 164 (272)
+|+.|+.++||++|+.+.+.++|++|+|+|. +| +++|++|+|||+| + |++|.+.+. ++ ..|+||||||+||++
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~--~g~~~i~CP~Hg~~Fdl~ 80 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEH--QDDLWVASPLKKQHFRLY 80 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEES--SSSEEEECSSSCCEEETT
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCccc--CCCeEEECCCCCCEEeCC
Confidence 6999999999999999999999999999998 78 8999999999999 5 999988421 23 389999999999999
Q ss_pred CCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 165 TGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 165 tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
||+|+.+|+ . .+..|+++...|.++.+..
T Consensus 81 tG~~~~~P~-~------------~L~~~~v~v~~g~V~V~~~ 109 (130)
T 2jza_A 81 DGFCLEDGA-Y------------SVAAYDTQVTNGNVQISIA 109 (130)
T ss_dssp TCCBSSCCS-S------------CCBCCCEEESSSEEEEECC
T ss_pred CcCCCCCCc-C------------cceEEEEEEECCEEEEEeC
Confidence 999999885 2 3456777888887765543
No 12
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.86 E-value=9.4e-23 Score=170.14 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=89.2
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCc-ccccCcccccccCC-CEEEeCCccceEeC
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEG-AYSEGLINAKLTQD-GCIVCPTTESTFDL 163 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~-~~i~CP~Hg~~Fdl 163 (272)
...+.|+.|+.++||++|+.+.++++|++|+|+|.+|+++|++|+|||+| +|++|.+.+. ++ +.|+||||||+||+
T Consensus 12 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~G~v~A~~n~CpH~g~~L~~G~~~~~--~g~~~i~CP~Hgw~Fdl 89 (157)
T 3d89_A 12 KKKYTSVCVGREEDIRKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGEIEDF--NGQSCIVCPWHKYKITL 89 (157)
T ss_dssp --CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEEETTEEEEEESBCTTTCCBGGGSEEEEE--TTEEEEECTTTCCEEET
T ss_pred CCCCceEEEEEHHHCCCCCeEEEEECCEEEEEEEECCEEEEEeCCCCCCCCCCcCCEecCc--CCCCEEECCCCCCEEec
Confidence 35678999999999999999999999999999999999999999999999 5999987321 12 68999999999999
Q ss_pred CCCccccC---CCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 164 RTGAVRDW---YPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 164 ~tG~~~~~---P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
+||+|+.. |...+.. .........+..|+++...|+++.+..
T Consensus 90 ~tG~~~~~~i~P~~~~~~-~~~~~~~~~L~~~~v~v~~G~V~V~~~ 134 (157)
T 3d89_A 90 ATGEGLYQSINPKDPSAK-PKWCSKGVKQRIHTVKVDNGNIYVTLS 134 (157)
T ss_dssp TTCEEEEEECCCC------CEEEEEEECSCEEEEEEETTEEEEECC
T ss_pred CCcCEEEeccCCCccccc-cccccccCcceEEEEEEECCEEEEEeC
Confidence 99999862 4221110 000000124567888888998876554
No 13
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=99.82 E-value=2e-20 Score=176.50 Aligned_cols=114 Identities=24% Similarity=0.289 Sum_probs=94.7
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCC
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
...+.|+.||.++||++|+.+.++++|++|+|+|.+|+++|+.|+|||+|+ |+.|.+.. .++.|+||||||+||++
T Consensus 30 if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~dG~v~A~~N~CpHRGa~Ls~G~~~~---~~~~I~CPyHGW~Fdl~ 106 (394)
T 3gcf_A 30 GFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTRAKGEVKAIADGCAHRGVPFSKEPLCF---KAGTVSCWYHGWTYDLD 106 (394)
T ss_dssp CEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEEETTEEEEEESSCTTTCCCGGGSCBCS---STTEEECTTTCEEEETT
T ss_pred hhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEEeCCeEEEeeCcCCCCCCCCcCCcccC---cCCEEECCCCCcEEECC
Confidence 456799999999999999999999999999999999999999999999995 99987421 57899999999999999
Q ss_pred CCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 165 TGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 165 tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
||+|+..|+.+... ......+..|++++..|+++....
T Consensus 107 dG~cv~iP~~p~~~----~~~~~~L~~ypV~e~~G~VfV~lg 144 (394)
T 3gcf_A 107 DGRLVDVLTSPGSP----VIGKIGIKVYPVQVAQGVVFVFIG 144 (394)
T ss_dssp TCBEEEETTSTTCT----TTTSCBCCEECEEEETTEEEEEES
T ss_pred CCceeccCCCcccc----cccccCceEEEEEEECCcEEEecC
Confidence 99999987543211 111235678899999999876653
No 14
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=99.82 E-value=2.4e-20 Score=175.60 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=93.8
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCC
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
...+.|+.||.++||++|+.+.++++|++|+|+|.+|+++|+.|+|||+|+ |+.|.+.. .++.|+||||||+||++
T Consensus 27 if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R~dG~v~A~~N~CpHRGa~Ls~G~~~~---~~~~I~CPyHGW~Fdl~ 103 (389)
T 3gkq_A 27 GFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNRVDGVVHAIADRCLHRGVTLSDKVECY---SKATISCWYHGWTYRWD 103 (389)
T ss_dssp CBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTEEEEEESSCTTTCCCGGGGCCCS---BTTEEECTTTCEEEETT
T ss_pred hhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEEeCCeEEEeCCcCCCCCCCccCCcccC---cCCEEECCCCCCEEECC
Confidence 456799999999999999999999999999999999999999999999995 99886311 46899999999999999
Q ss_pred CCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 165 TGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 165 tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
||+|+..|..+... ......+..|++++..|+++....
T Consensus 104 dG~cv~iP~~P~~~----~~~~~~L~~ypV~e~~G~VfV~lg 141 (389)
T 3gkq_A 104 NGKLVDILTNPTSV----QIGRHALKTYPVREEKGLVFLFVG 141 (389)
T ss_dssp TCBEEEETTCTTCT----TTTSCBCCBCCEEEETTEEEEEES
T ss_pred CCCeecccCCcccc----cccccCCcEEEEEEECCeEEEecC
Confidence 99999987543211 111234567888888998876653
No 15
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=99.82 E-value=3.1e-20 Score=175.57 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=93.8
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCC
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
...+.|+.||.++||++|+.+.+++.|++|+|+|.+|+++|+.|.|||+|+ |+.|.+.+ .++.|+||||||+||++
T Consensus 24 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~G~v~a~~n~CpHrga~L~~g~~~~---~~~~i~CpyHgw~f~~~ 100 (392)
T 2de6_A 24 GFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNRIDGKLYCLKDRCLHRGVQLSVKVECK---TKSTITCWYHAWTYRWE 100 (392)
T ss_dssp CBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTEEEEEESSCTTTCCCGGGGCCCC---STTEEECTTTCEEEETT
T ss_pred hhccccEEEEEHHHCCCCCeEEEEECCEEEEEEEeCCEEEEEeCcCCCCCCCCcCCcccC---CCCEEEeCCCCCEEcCC
Confidence 456799999999999999999999999999999999999999999999995 99988632 36899999999999998
Q ss_pred CCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 165 TGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 165 tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
||+|+..|..+... ......+..|++++..|+++....
T Consensus 101 ~G~~~~~p~~p~~~----~~~~~~l~~~~v~~~~G~v~v~~~ 138 (392)
T 2de6_A 101 DGVLCDILTNPTSA----QIGRQKLKTYPVQEAKGCVFIYLG 138 (392)
T ss_dssp TCBEEEETTCTTCT----TTTSCBCCBCCEEEETTEEEEEES
T ss_pred CCccccccCCcccc----ccccCCCceEeEEEECCEEEEEeC
Confidence 99999987533211 111234567888888998876654
No 16
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.82 E-value=4.3e-20 Score=149.51 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=74.8
Q ss_pred CccEEeeeCCCCCCCCeEEEEECCeEEEEEEe---------------------------CCEEEEEcCCCcCCcc-cccC
Q 024098 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWY---------------------------KDEVFAIENRSPAEGA-YSEG 140 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~---------------------------~g~v~A~~n~CpH~g~-L~~G 140 (272)
+.|+.| .+++|++|+.+.+.+.|++++|+|. +|+++|+.|.|||+|+ |++|
T Consensus 4 ~~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g 82 (129)
T 1rie_A 4 MSKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIAN 82 (129)
T ss_dssp CSSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEET
T ss_pred cCceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeecccc
Confidence 368888 9999999999999999999999985 8999999999999995 9888
Q ss_pred cccccccCCCEEEeCCccceEeCCCCccccCCCCCCcc
Q 024098 141 LINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVM 178 (272)
Q Consensus 141 ~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~ 178 (272)
.. +++.|+||||||+||+ ||+++.+|+..++.
T Consensus 83 ~~-----~~~~i~CP~Hg~~fd~-~G~~~~~P~~~~l~ 114 (129)
T 1rie_A 83 AG-----DFGGYYCPCHGSHYDA-SGRIRKGPAPLNLE 114 (129)
T ss_dssp CT-----TTEEEEETTTTEEEET-TCCEEESSCCSCCC
T ss_pred cC-----CCCEEEcCCCCCEEcC-CCCEeeCCCCCCCC
Confidence 76 5689999999999999 99999998776664
No 17
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=99.81 E-value=2.1e-20 Score=174.35 Aligned_cols=108 Identities=16% Similarity=0.084 Sum_probs=90.8
Q ss_pred CCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCC
Q 024098 87 GGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 87 ~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
..+.|+.||.++|| +|+.+.+.++|++|+|+|+ +|+++|+.|.|||+|+ |+.|.+ +++.|+||||||+||+
T Consensus 5 ~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~-----~~~~i~CpyHgw~fd~- 77 (349)
T 3gke_A 5 VRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGIL-----VNGHLQCPYHGLEFDG- 77 (349)
T ss_dssp CCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEE-----ETTEEECTTTCCEECT-
T ss_pred cccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCc-----cceEEEECCCCCEEcC-
Confidence 35689999999999 8999999999999999997 9999999999999995 999988 5789999999999999
Q ss_pred CCccccCCC-CCCcccCCcCCCCcceEEeecccCCCcccccccc
Q 024098 165 TGAVRDWYP-NNPVMEGGASSDASAEIVFSGKAQPGVTATDVNI 207 (272)
Q Consensus 165 tG~~~~~P~-~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~~ 207 (272)
||+|+..|. ...++ ....+..|++++..|+++.....
T Consensus 78 ~G~~~~~P~~~~~~~------~~~~l~~~~v~~~~G~V~v~~~~ 115 (349)
T 3gke_A 78 GGQCVHNPHGNGARP------ASLNVRSFPVVERDALIWIWPGD 115 (349)
T ss_dssp TCCEEECCSTTCCCC------GGGCCCBCCEEEETTEEEECCSC
T ss_pred CCCccccCccccccc------cccccceeeEEEECCEEEEeeCC
Confidence 999999984 22111 12245678888888988665543
No 18
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=99.81 E-value=3.9e-20 Score=174.83 Aligned_cols=109 Identities=10% Similarity=0.136 Sum_probs=92.4
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeC
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDL 163 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl 163 (272)
...+.|+.||.++||++|+.+.+++.|++|+|+|+ +|+++|+.|.|||+|+ |+.|.+ +++.|+||||||+||+
T Consensus 21 ~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~-----~~~~i~CpyHgw~f~~ 95 (386)
T 2zyl_A 21 RYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTV-----KGDEVACPFHDWRWGG 95 (386)
T ss_dssp SCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEE-----ETTEEECTTTCCEEET
T ss_pred hhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcc-----cCCEEEeCCCCCEECC
Confidence 34568999999999999999999999999999998 9999999999999995 999988 5789999999999999
Q ss_pred CCCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 164 RTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 164 ~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
||+|+..|.....+ ....+..|++++..|+++....
T Consensus 96 -~G~~~~~P~~~~~~------~~~~l~~~~v~~~~G~v~v~~~ 131 (386)
T 2zyl_A 96 -DGRCKLVPYARRTP------RMARTRSWTTDVRSGLLFVWHD 131 (386)
T ss_dssp -TSBEEECTTCSSCC------TTCBCCEECEEEETTEEEEEEC
T ss_pred -CCCccccCcccccC------cccCcceEeEEEECCEEEEEEC
Confidence 99999999653321 1224567888888888765443
No 19
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=99.80 E-value=1.2e-19 Score=174.48 Aligned_cols=114 Identities=22% Similarity=0.230 Sum_probs=93.8
Q ss_pred CCCCccEEeeeCCCCCCCCeEEEEECCeEEEEEEeCCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCC
Q 024098 86 GGGENWVPVVPLSALPKGERRVIIQDGETILLLWYKDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 86 ~~~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
...+.|+.||.++||++|+.+.+++.|++|+|+|.+|+++|+.|+|||+|+ |+.|.+.+ .++.|+||||||+||++
T Consensus 39 if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r~~G~v~a~~n~CpHrga~L~~g~~~~---~~~~i~CpyHgw~fd~~ 115 (446)
T 1z01_A 39 GFINHWYPALFTHELEEDQVQGIQICGVPIVLRRVNGKVFALKDQCLHRGVRLSEKPTCF---TKSTISCWYHGFTFDLE 115 (446)
T ss_dssp CBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEEETTEEEEEESSCTTTCCCGGGSCCCS---STTEEECTTTCEEEETT
T ss_pred hhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEEeCCEEEEEeCcCCCCcCCCCCCccCC---CCCEEEeCCCCeEEeCC
Confidence 556799999999999999999999999999999999999999999999995 99987421 46899999999999998
Q ss_pred CCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 165 TGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 165 tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
||+|+.+|..+... ......+..|++++..|+++....
T Consensus 116 ~G~~~~~p~~p~~~----~~~~~~l~~~~v~~~~G~V~v~~~ 153 (446)
T 1z01_A 116 TGKLVTIVANPEDK----LIGTTGVTTYPVHEVNGMIFVFVR 153 (446)
T ss_dssp TCBEEEETTCTTCT----TTTSCBCCEECEEEETTEEEEEEC
T ss_pred CCCccccCCCcccc----CcccCCCcEEEEEEECCEEEEEeC
Confidence 99999987532211 112235678889999998865543
No 20
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=99.80 E-value=7.4e-20 Score=176.11 Aligned_cols=133 Identities=13% Similarity=0.056 Sum_probs=102.7
Q ss_pred eeeccccccccccccCCCCCCCCCccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcc
Q 024098 66 TCKAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLI 142 (272)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v 142 (272)
...+++...++.++. ....+.|+.||.++||+ +|+.+.+.++|++|+|+|+ +|+++|+.|+|||+|+ |+.|..
T Consensus 17 ~~~y~~~~~~~~E~~----~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~ 92 (454)
T 2gbw_A 17 RQVFWDEDVYALEIE----RIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFINSCSHRGNQICHADS 92 (454)
T ss_dssp GGGGTCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCCSE
T ss_pred HHHcCCHHHHHHHHH----HHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeccCCCCCCCCccccc
Confidence 444777777777665 24567999999999999 6889999999999999998 9999999999999995 988765
Q ss_pred cccccCCCEEEeCCccceEeCCCCccccCCCCCCcccCCcCCCCcceEEeecccCCCcccccccc
Q 024098 143 NAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVNI 207 (272)
Q Consensus 143 ~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~~ 207 (272)
. .++.|+||||||+||+ ||+|+..|........+.......+..|++++..|+++.....
T Consensus 93 g----~~~~i~CpyHgw~f~~-~G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~ 152 (454)
T 2gbw_A 93 G----NAKAFVCNYHGWVFGQ-DGSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDP 152 (454)
T ss_dssp E----ECSEEECTTTCCEEET-TSCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCT
T ss_pred C----CcCEEEeCCCCCEecC-CCCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCC
Confidence 2 3679999999999999 8999999865432111111111245567888889988765543
No 21
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.80 E-value=8.5e-20 Score=148.51 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=74.4
Q ss_pred CccEEeeeCCCCCCCCeEEEEEC--CeEEEEEEe----------CCEEEEEcCCCcCCcc-cccCcccccccCCCEEEeC
Q 024098 89 ENWVPVVPLSALPKGERRVIIQD--GETILLLWY----------KDEVFAIENRSPAEGA-YSEGLINAKLTQDGCIVCP 155 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~~--g~~vvl~r~----------~g~v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP 155 (272)
..|+.|+.++||++|+.+.+.+. +++++|+|. +|+++|++|.|||+|+ |+++ . +++.|+||
T Consensus 6 ~p~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~-----~~~~i~CP 79 (133)
T 1g8k_B 6 YPATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-S-----SSKTFSCP 79 (133)
T ss_dssp CCCEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-T-----TTTEEECT
T ss_pred CCceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-c-----CCCEEECC
Confidence 36999999999999999999985 899999998 8999999999999994 8763 3 57899999
Q ss_pred CccceEeCC-CCccccCCCCCCcc
Q 024098 156 TTESTFDLR-TGAVRDWYPNNPVM 178 (272)
Q Consensus 156 ~Hg~~Fdl~-tG~~~~~P~~~pl~ 178 (272)
||||+||++ ||+++.+|+..++.
T Consensus 80 ~Hg~~Fd~~~~G~~~~gP~~~~L~ 103 (133)
T 1g8k_B 80 CHFTEFDAEKAGQMICGEATADLP 103 (133)
T ss_dssp TTCCEEEGGGTTEEEESSCSSCCC
T ss_pred CCCCEECCCCCCCEEcCCCCCCCC
Confidence 999999998 99999998766553
No 22
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=99.79 E-value=6.2e-20 Score=174.87 Aligned_cols=126 Identities=16% Similarity=0.127 Sum_probs=101.5
Q ss_pred eccccccccccccCCCCCCCCCccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cc-cCccc
Q 024098 68 KAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YS-EGLIN 143 (272)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~-~G~v~ 143 (272)
.+++...++.++. ....+.|+.||.++||+ +|+.+.++++|++|+|+|+ +|+++|+.|+|||+|+ |+ +|..
T Consensus 25 ~Y~d~~~~~~E~~----~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~CpHrga~L~~~g~~- 99 (412)
T 3vca_A 25 FYTSPEVYALDLQ----HIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQG- 99 (412)
T ss_dssp HHHCHHHHHHHHH----HTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEE-
T ss_pred HcCCHHHHHHHHH----HHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEecccCCCCCCEeeccccc-
Confidence 3677777777765 35567999999999999 6999999999999999998 9999999999999995 97 7877
Q ss_pred ccccCCCEEEeCCccceEeCCCCccccCCCCCCcccCCcCCCCcceEEeecccCCCcccccccc
Q 024098 144 AKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVNI 207 (272)
Q Consensus 144 ~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~~ 207 (272)
.++.|+||||||+||+ ||+|+..|+..+- .......+..|++++..|+++.....
T Consensus 100 ----~~~~i~CPyHgw~fdl-dG~~~~~P~~~~~----~~~~~~~L~~~~v~~~~G~V~v~~~~ 154 (412)
T 3vca_A 100 ----QVAKLVCPYHQWTYEL-DGKLIWANDMGPD----FDASKYGLKPVNLRNLDGLIYICLSD 154 (412)
T ss_dssp ----ECSSEECTTTCCEECT-TSCEEECTTCCTT----CCGGGCSCCEEEEEEETTEEEEECSS
T ss_pred ----CCCEEEcCCCCCEEcC-CCccccCCccccc----cCcccCCCcEEEEEEECCEEEEEecC
Confidence 5688999999999999 8999999854211 11112345678889999988766543
No 23
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=99.79 E-value=7.3e-20 Score=174.25 Aligned_cols=127 Identities=13% Similarity=0.131 Sum_probs=102.1
Q ss_pred eeccccccccccccCCCCCCCCCccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-ccc-Ccc
Q 024098 67 CKAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSE-GLI 142 (272)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~-G~v 142 (272)
..+++...++.++. ....+.|+.||.++||+ +|+.+.++++|++|+|+|+ +|+++|+.|+|||+|+ |+. |..
T Consensus 22 ~~Y~d~~~~~~E~~----~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~C~Hrga~L~~~g~~ 97 (409)
T 3n0q_A 22 AFYTDAEVFQTDLQ----EIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKG 97 (409)
T ss_dssp HHHHCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEE
T ss_pred HHcCCHHHHHHHHH----HHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEeecCcCCcCcCCccCcCcc
Confidence 34777777777776 35668999999999998 5999999999999999998 9999999999999995 885 776
Q ss_pred cccccCCCEEEeCCccceEeCCCCccccCCCCCCcccCCcCCCCcceEEeecccCCCcccccccc
Q 024098 143 NAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVNI 207 (272)
Q Consensus 143 ~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~~ 207 (272)
.++.|+||||||+||+ ||+|+..|...+ +.......+..|++++..|+++.....
T Consensus 98 -----~~~~i~CpyHgw~fd~-dG~~~~~P~~~~----~~~~~~~~L~~~~v~~~~G~Vfv~~~~ 152 (409)
T 3n0q_A 98 -----NNPKLVCPYHQWTYEL-DGRLLWARDMGP----DFEPSRHGLKTVHCRELAGLIYICLAD 152 (409)
T ss_dssp -----ECSSEECTTTCCEECT-TSCEEECTTCCT----TCCGGGCSCCEEEEEEETTEEEEECSS
T ss_pred -----CCCEEEECCCCCEEeC-CCCcccCCcCCc----ccCcccCCCceEEEEEECCEEEEEeCC
Confidence 4688999999999999 899999885421 111112345678888899988766543
No 24
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=99.78 E-value=5e-20 Score=176.91 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=99.5
Q ss_pred eeccccccccccccCCCCCCCCCccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCccc
Q 024098 67 CKAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLIN 143 (272)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~ 143 (272)
..+++...++.++. ....+.|+.||.++||+ +|+.+.+.++|++|+|+|+ +|+++|+.|+|||+|+ |+.|.+.
T Consensus 17 ~~y~~~~~~~~E~~----~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g 92 (447)
T 2bmo_A 17 LIHGDKELFQHELK----TIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAG 92 (447)
T ss_dssp GGGTCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBCCCSSEE
T ss_pred ceeCCHHHHHHHHH----HhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEEEeccCcCCCCCccccccC
Confidence 34677777777665 24567999999999999 6889999999999999997 9999999999999995 9988762
Q ss_pred ccccCCCEEEeCCccceEeCCCCccccCCCCCCcccCCcCCCCcceEEee-cccCCCccccccc
Q 024098 144 AKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVMEGGASSDASAEIVFS-GKAQPGVTATDVN 206 (272)
Q Consensus 144 ~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp-~k~~~G~i~sdv~ 206 (272)
.++.|+||||||+||+ ||+|+..|........+.......+..|+ +++..|+++....
T Consensus 93 ----~~~~l~CpyHgw~f~~-~G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~ 151 (447)
T 2bmo_A 93 ----NAKGFVCGYHGWGYGS-NGELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFD 151 (447)
T ss_dssp ----ECSEEECTTTCCEEET-TSCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESC
T ss_pred ----CcCeEECCCCcchhcC-CCcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcC
Confidence 3579999999999999 99999988642110001111112345676 7777888865544
No 25
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.78 E-value=3e-19 Score=151.73 Aligned_cols=85 Identities=16% Similarity=0.138 Sum_probs=75.6
Q ss_pred CCccEEeeeCCCCCCCCeEEEEECC--eEEEEEEe----------CCEEEEEcCCCcCCc-ccccCcccccccCCCEEEe
Q 024098 88 GENWVPVVPLSALPKGERRVIIQDG--ETILLLWY----------KDEVFAIENRSPAEG-AYSEGLINAKLTQDGCIVC 154 (272)
Q Consensus 88 ~~~W~~v~~~~el~~g~~~~v~~~g--~~vvl~r~----------~g~v~A~~n~CpH~g-~L~~G~v~~~~~~~~~i~C 154 (272)
...++.||.++||++|+.+.+.+.+ ++++|+|. +|+++|++|.|||+| +|++| . +++.|+|
T Consensus 48 ~~p~~~v~~~~dL~~g~~~~v~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~-----~~~~i~C 121 (175)
T 4aay_B 48 EYPANRLANISELTLNEPLDVAYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-A-----DNKTFNC 121 (175)
T ss_dssp CCCCEEEEEGGGCBBTBCEEEESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-T-----TTTEEEC
T ss_pred CCCcceEEEHHHCCCCCEEEEEECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-C-----CCCEEEc
Confidence 3467899999999999999999974 58999997 899999999999999 59877 4 5789999
Q ss_pred CCccceEeCC-CCccccCCCCCCcc
Q 024098 155 PTTESTFDLR-TGAVRDWYPNNPVM 178 (272)
Q Consensus 155 P~Hg~~Fdl~-tG~~~~~P~~~pl~ 178 (272)
|||||+||++ ||+|+.+|+..+|+
T Consensus 122 P~Hg~~Fd~~~tG~~~~gPa~~~L~ 146 (175)
T 4aay_B 122 PGHFSVFDPEKGGQQVWGQATQNLP 146 (175)
T ss_dssp TTTCCEEEGGGTTEEEECSCSSCCC
T ss_pred CCCCCEECCCCCceEecCCCCCCcC
Confidence 9999999998 89999999876665
No 26
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=99.77 E-value=2.5e-19 Score=172.75 Aligned_cols=135 Identities=10% Similarity=0.122 Sum_probs=105.1
Q ss_pred ceeeeccccccccccccCCCCCCCCCccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccC
Q 024098 64 KLTCKAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEG 140 (272)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G 140 (272)
+-...+++...++.++. ....+.|+.||.++||+ +|+.+.+.++|++|+|+|+ +|+|+|+.|+|||+|+ |+.|
T Consensus 35 ~~~~~Ytd~~~~~~E~~----~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~~n~C~Hrga~L~~g 110 (457)
T 3gzx_A 35 LDARIYADQDLYQLELE----RVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRS 110 (457)
T ss_dssp EEGGGGTCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCS
T ss_pred CCHHHcCCHHHHHHHHH----HHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCCCCCcCccCC
Confidence 33556888888888776 35678999999999998 6889999999999999998 9999999999999995 9887
Q ss_pred cccccccCCCEEEeCCccceEeCCCCccccCCCCCCcc----cCC--cCCCCcceEEeecccCCCcccccccc
Q 024098 141 LINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVM----EGG--ASSDASAEIVFSGKAQPGVTATDVNI 207 (272)
Q Consensus 141 ~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~----~~g--~~~~~~~v~vFp~k~~~G~i~sdv~~ 207 (272)
... .++.|+||||||+||+ +|+|+..|...... .++ .......+..+++.+..|+++.....
T Consensus 111 ~~g----~~~~i~CpyHgw~fd~-~G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~ 178 (457)
T 3gzx_A 111 DGG----NAKAFTCTYHGWAYDI-AGNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDP 178 (457)
T ss_dssp SEE----ECSEEECTTTCCEEET-TSCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCT
T ss_pred CCC----cCCEEEcCCCCCEecC-CCcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCC
Confidence 631 4679999999999999 89999999753111 011 11112234567888899999766554
No 27
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=99.77 E-value=2e-19 Score=173.48 Aligned_cols=129 Identities=11% Similarity=0.147 Sum_probs=98.2
Q ss_pred eccccccccccccCCCCCCCCCccEEeeeCCCCC-CCCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcccc
Q 024098 68 KAAEVSVTEEESSASGGGGGGENWVPVVPLSALP-KGERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLINA 144 (272)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~-~g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v~~ 144 (272)
.+++...++.++. ....+.|+.||.++||+ +|+.+.+.+++++|+|+|+ +|+++|+.|+|||+|+ |+.|...
T Consensus 37 ~y~d~~~~~~E~~----~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g- 111 (460)
T 1uli_A 37 IYTDEALYEQELE----RIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGG- 111 (460)
T ss_dssp GGTCHHHHHHHHH----HTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEE-
T ss_pred HcCCHHHHHHHHH----HhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeeeCCCCCCCCccccCC-
Confidence 4666666666665 24567999999999999 5778899999999999998 9999999999999995 9887752
Q ss_pred cccCCCEEEeCCccceEeCCCCccccCCCCCCcccCCcCCCCcceEEeecccCCCccccccc
Q 024098 145 KLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATDVN 206 (272)
Q Consensus 145 ~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sdv~ 206 (272)
.++.|+||||||+||+ ||+|+..|...+... +.......+..|++++..|+++....
T Consensus 112 ---~~~~i~CpyHgw~fd~-~G~~~~~P~~~~~~~-~~~~~~~~L~~~~v~~~~G~V~v~~~ 168 (460)
T 1uli_A 112 ---NAKSFTCSYHGWAYDT-GGNLVSVPFEEQAFP-GLRKEDWGPLQARVETYKGLIFANWD 168 (460)
T ss_dssp ---ECSCEECTTTCCEECT-TCCEEECTTHHHHCT-TCCGGGSSCCEEEEEEETTEEEEECC
T ss_pred ---CCCEEEcCCCCCEEeC-CCCEeeCCccccccC-CCCHhHcCCceeeEEEECCEEEEEeC
Confidence 3578999999999999 999999986432110 11111123456788888888865544
No 28
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=99.76 E-value=5.3e-19 Score=170.88 Aligned_cols=101 Identities=17% Similarity=0.210 Sum_probs=85.4
Q ss_pred eeeccccccccccccCCCCCCCCCccEEeeeCCCCCC-CCeEEEEECCeEEEEEEe-CCEEEEEcCCCcCCcc-cccCcc
Q 024098 66 TCKAAEVSVTEEESSASGGGGGGENWVPVVPLSALPK-GERRVIIQDGETILLLWY-KDEVFAIENRSPAEGA-YSEGLI 142 (272)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~W~~v~~~~el~~-g~~~~v~~~g~~vvl~r~-~g~v~A~~n~CpH~g~-L~~G~v 142 (272)
...+++...++.++.. ...+.|+.||.++||++ |+.+.+.++|++|+|+|+ +|+|+|+.|+|||+|+ |+.|.+
T Consensus 25 ~~~Ytd~~~~~~E~~~----if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~C~Hrga~L~~g~~ 100 (470)
T 2b1x_A 25 AAIINDPEVHDVERER----IFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLNACRHRGMQVCRAEM 100 (470)
T ss_dssp GGGSSCHHHHHHHHHH----TTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSE
T ss_pred HHHcCCHHHHHHHHHH----HhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEecccCCCCCEeeccCc
Confidence 3346667777766652 45679999999999995 788899999999999998 9999999999999995 998876
Q ss_pred cccccCCCEEEeCCccceEeCCCCccccCCCCC
Q 024098 143 NAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNN 175 (272)
Q Consensus 143 ~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~ 175 (272)
. .++.|+||||||+||+ ||+|+..|...
T Consensus 101 ~----~~~~i~CpyHgw~f~~-~G~~~~~P~~~ 128 (470)
T 2b1x_A 101 G----NTSHFRCPYHGWTYSN-TGSLVGVPAGK 128 (470)
T ss_dssp E----ECSEEECTTTCCEEET-TSCEEECTTTT
T ss_pred C----CCCEEEECCCCCeecC-CCceeecCccc
Confidence 2 2479999999999999 99999998754
No 29
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.74 E-value=5.7e-19 Score=144.73 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=79.7
Q ss_pred CCCCccEEeee-CCCCCCCCeEEEE-ECCeEEEEEEe-CCEE--EEEcCCCcCCcc-cccCcccccccCCCEEEeCCccc
Q 024098 86 GGGENWVPVVP-LSALPKGERRVII-QDGETILLLWY-KDEV--FAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTES 159 (272)
Q Consensus 86 ~~~~~W~~v~~-~~el~~g~~~~v~-~~g~~vvl~r~-~g~v--~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~ 159 (272)
....+|+.++. ++||++|+.+.+. +.|++++++|. +|++ +|++|.|||+|+ |+.|. .++.|+||||||
T Consensus 17 ~~~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~------~~~~i~CP~Hg~ 90 (139)
T 1rfs_A 17 DALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA------AENKFICPCHGS 90 (139)
T ss_dssp CTTSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET------TTTEEECTTTCC
T ss_pred cCCCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC------CCCEEEcCCCCC
Confidence 34568999998 8999999887776 46677766665 9999 999999999994 98765 358999999999
Q ss_pred eEeCCCCccccCCCCCCcccCCcCCCCcceEEeecccCCCcccc
Q 024098 160 TFDLRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTAT 203 (272)
Q Consensus 160 ~Fdl~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~s 203 (272)
+||+ ||+|+.+|+..+| ..|+++.+.|.++.
T Consensus 91 ~Fd~-tG~~~~~P~~~~L------------~~~~v~v~~g~V~V 121 (139)
T 1rfs_A 91 QYNN-QGRVVRGPAPLSL------------ALAHCDVDDGKVVF 121 (139)
T ss_dssp EEET-TCCEEESSCCSCC------------CEEEEEEETTEEEE
T ss_pred EECC-CCCCccCCCCCCC------------CEEEEEEECCEEEE
Confidence 9996 9999999875544 46677777776643
No 30
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.70 E-value=4e-17 Score=139.78 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=72.2
Q ss_pred CCccEEeeeCCCCCCCCeEEEEECCeEEEEEEe---------------------------CCEEEEEcCCCcCCcc--cc
Q 024098 88 GENWVPVVPLSALPKGERRVIIQDGETILLLWY---------------------------KDEVFAIENRSPAEGA--YS 138 (272)
Q Consensus 88 ~~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~---------------------------~g~v~A~~n~CpH~g~--L~ 138 (272)
...|+.| .+++|++|+.+.+.+.|++|+|+|. +|+++|+.|.|||+|+ +.
T Consensus 60 a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~ 138 (185)
T 3cx5_E 60 AMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG 138 (185)
T ss_dssp CCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred ccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence 3589999 7999999999999999999999997 5899999999999995 43
Q ss_pred cCcccccccCCCEEEeCCccceEeCCCCccccCCCCCCcc
Q 024098 139 EGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVM 178 (272)
Q Consensus 139 ~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~ 178 (272)
++. +++.|.||||||+||+ +|+++.+|+..+|.
T Consensus 139 ~~~------~~~~~~CPcHGs~FD~-~G~v~~gPa~~~L~ 171 (185)
T 3cx5_E 139 EAG------DFGGWFCPCHGSHYDI-SGRIRKGPAPLNLE 171 (185)
T ss_dssp EET------TTTEEEETTTTEEECT-TCCEEESSCCSCCC
T ss_pred CCC------CCCEEEcCCCCCEECC-CCCEecCCCCCCcc
Confidence 321 4588999999999999 99999999876663
No 31
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.69 E-value=8.9e-17 Score=137.86 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=71.8
Q ss_pred CccEEeeeCCCCCCCCeEEEEECCeEEEEEEe-----------------------------------------CCEEEEE
Q 024098 89 ENWVPVVPLSALPKGERRVIIQDGETILLLWY-----------------------------------------KDEVFAI 127 (272)
Q Consensus 89 ~~W~~v~~~~el~~g~~~~v~~~g~~vvl~r~-----------------------------------------~g~v~A~ 127 (272)
..|+.| ++++|++|+.+.+.+.|++|+|+|. +|+++|+
T Consensus 47 ~~~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~ 125 (187)
T 2qjy_C 47 LASIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVM 125 (187)
T ss_dssp CCCEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEE
T ss_pred cccEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEE
Confidence 358886 8999999999999999999999982 7899999
Q ss_pred cCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCCCccccCCCCCCcc
Q 024098 128 ENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVM 178 (272)
Q Consensus 128 ~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~ 178 (272)
.|.|||+|+ |++| ..+ +.+.|.||||||+||+ +|+++.+|+..+|.
T Consensus 126 ~~~C~H~G~~l~~~-~~g---~~~~~~CP~Hg~~Fd~-~G~~~~gPa~~~L~ 172 (187)
T 2qjy_C 126 WGVCTHLGCSPIGG-VSG---DFGGWFCPCHGSHYDS-AGRIRKGPAPENLP 172 (187)
T ss_dssp ECCCTTTSCCCEEE-EET---TTTEEEETTTTEEECT-TSCEEESSCCSCCC
T ss_pred eCccCCCCeECccC-cCC---CcCEEEeCCCCCEECC-CCeEeCCCCCCCCc
Confidence 999999995 8764 211 3479999999999999 89999998776664
No 32
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.69 E-value=5.2e-17 Score=140.23 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=71.5
Q ss_pred EeeeCCCCCCCCeEEEEECCeEEEEEEe---------------------------CCEEEEEcCCCcCCcc-cccCcccc
Q 024098 93 PVVPLSALPKGERRVIIQDGETILLLWY---------------------------KDEVFAIENRSPAEGA-YSEGLINA 144 (272)
Q Consensus 93 ~v~~~~el~~g~~~~v~~~g~~vvl~r~---------------------------~g~v~A~~n~CpH~g~-L~~G~v~~ 144 (272)
..+.+++|++|+.+.+.+.|++|+|+|. +|+++|+.|.|||+|+ |+.|..
T Consensus 74 v~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~-- 151 (196)
T 1pp9_E 74 IEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAG-- 151 (196)
T ss_dssp EEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCS--
T ss_pred cEEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCC--
Confidence 3479999999999999999999999985 8899999999999996 887765
Q ss_pred cccCCCEEEeCCccceEeCCCCccccCCCCCCcc
Q 024098 145 KLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVM 178 (272)
Q Consensus 145 ~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~ 178 (272)
+++.|.||||||+||+ +|+++.+|+..+|.
T Consensus 152 ---~~~~~~CP~HGs~FD~-~G~v~~gPa~~~L~ 181 (196)
T 1pp9_E 152 ---DFGGYYCPCHGSHYDA-SGRIRKGPAPLNLE 181 (196)
T ss_dssp ---TTSSEEETTTTEEECT-TCCEEESSCCSCCC
T ss_pred ---CCCEEEeCCCCCEECC-CCCCccCCCCCCCc
Confidence 4688999999999999 99999999876664
No 33
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.67 E-value=1.5e-16 Score=130.69 Aligned_cols=78 Identities=18% Similarity=0.160 Sum_probs=68.9
Q ss_pred eeCCCCCCCCeEEEEECCeEEEEEEe-----------------------------------------CCEEEEEcCCCcC
Q 024098 95 VPLSALPKGERRVIIQDGETILLLWY-----------------------------------------KDEVFAIENRSPA 133 (272)
Q Consensus 95 ~~~~el~~g~~~~v~~~g~~vvl~r~-----------------------------------------~g~v~A~~n~CpH 133 (272)
.++++|++|+.+.|...|++|.|.|. +|+++|+.|.|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 37899999999999999999999985 7899999999999
Q ss_pred Ccc-ccc-CcccccccCCCEEEeCCccceEeCCCCccccCCCCCCcc
Q 024098 134 EGA-YSE-GLINAKLTQDGCIVCPTTESTFDLRTGAVRDWYPNNPVM 178 (272)
Q Consensus 134 ~g~-L~~-G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~P~~~pl~ 178 (272)
+|+ |+. +.. +++.|.||||||+||+ +|+++.+|+..+|.
T Consensus 86 ~G~~l~~~~~~-----~~~~~~CP~Hgs~Fd~-~G~~~~gPa~~~L~ 126 (141)
T 2nwf_A 86 LGCVPIGGVSG-----DFGGWFCPCHGSHWDS-AGRIRKGPAPENLP 126 (141)
T ss_dssp TCCCCEEEEET-----TTTEEEETTTTEEECT-TSCEEESSCCSCCC
T ss_pred CCeEccccCcc-----CCCEEEcCCCCCEECC-CCCCccCCCCCCCC
Confidence 995 876 554 4689999999999999 89999999776664
No 34
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.48 E-value=5.1e-18 Score=138.11 Aligned_cols=98 Identities=14% Similarity=0.190 Sum_probs=76.5
Q ss_pred CCccEEeee-CCCCCCCCeEEEE--ECCeEEEEEEeCCE--EEEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceE
Q 024098 88 GENWVPVVP-LSALPKGERRVII--QDGETILLLWYKDE--VFAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTF 161 (272)
Q Consensus 88 ~~~W~~v~~-~~el~~g~~~~v~--~~g~~vvl~r~~g~--v~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~F 161 (272)
..+++.+.. ++|+++|+.+.+. +++..|++++.+|+ +||++|.|||+|+ |+.|. .++.|+||||||+|
T Consensus 13 ~g~~v~~~~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~------~~~~i~CP~Hg~~F 86 (133)
T 3azc_A 13 LGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV------SENKFICPCHGSQY 86 (133)
Confidence 345666654 6789999888887 66777777777888 9999999999994 98775 25789999999999
Q ss_pred eCCCCccccCCCCCCcccCCcCCCCcceEEeeccc-CCCccccc
Q 024098 162 DLRTGAVRDWYPNNPVMEGGASSDASAEIVFSGKA-QPGVTATD 204 (272)
Q Consensus 162 dl~tG~~~~~P~~~pl~~~g~~~~~~~v~vFp~k~-~~G~i~sd 204 (272)
| .||+|+.+|+..+| ..|+++. ..|.++..
T Consensus 87 d-~tG~~~~~P~~~~L------------~~ypv~v~~~g~V~V~ 117 (133)
T 3azc_A 87 D-STGKVVRGPAPLSL------------ALVKATVTEDDKLVFT 117 (133)
Confidence 9 69999998865444 4667777 77766443
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.63 E-value=1.4e-16 Score=134.10 Aligned_cols=92 Identities=25% Similarity=0.378 Sum_probs=69.4
Q ss_pred eCCCCCCCCeEEEEECCe-------------EEEEEEe-------------CCEEEEEcCCCcCCcc-cccCcccccccC
Q 024098 96 PLSALPKGERRVIIQDGE-------------TILLLWY-------------KDEVFAIENRSPAEGA-YSEGLINAKLTQ 148 (272)
Q Consensus 96 ~~~el~~g~~~~v~~~g~-------------~vvl~r~-------------~g~v~A~~n~CpH~g~-L~~G~v~~~~~~ 148 (272)
.+++|++|+.+.+...|. .+++.|. .++++|+.|.|||+|+ |++|.. +
T Consensus 26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~gv~A~~~~CpH~G~~L~~g~~-----~ 100 (165)
T 1nyk_A 26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEGVVAYSAVCTHLGCIVSQWVA-----D 100 (165)
T ss_dssp BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTTEEEEECBCTTTCCBCCEEEG-----G
T ss_pred cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCCEEEEEeecCCCCeEcccccC-----C
Confidence 678888888777765332 2555665 2449999999999995 988877 5
Q ss_pred CCEEEeCCccceEeCCCCc-cccCCCCCCcccCCcCCCCcceEEeecccCCCccccc
Q 024098 149 DGCIVCPTTESTFDLRTGA-VRDWYPNNPVMEGGASSDASAEIVFSGKAQPGVTATD 204 (272)
Q Consensus 149 ~~~i~CP~Hg~~Fdl~tG~-~~~~P~~~pl~~~g~~~~~~~v~vFp~k~~~G~i~sd 204 (272)
++.|.||||||+||++||. |+.+|+..+| ..|+.+...|.++..
T Consensus 101 ~~~i~CP~Hgs~Fd~~tG~~~~~gPa~~~L------------~~~~v~v~~g~V~v~ 145 (165)
T 1nyk_A 101 EEAALCPCHGGVYDLRHGAQVIAGPPPRPV------------PQLPVRVEDGVLVAA 145 (165)
T ss_dssp GTEEECTTTCCEEEGGGTTEEEESSCSSCC------------CEECEEEETTEEEEC
T ss_pred CCEEECCCCCCEEcCCCCCeeecCCCCCCC------------cEEEEEEECCEEEEE
Confidence 6899999999999999896 9999876544 356666667766443
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.58 E-value=3.4e-16 Score=133.26 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=63.1
Q ss_pred CCCCCCCCeEEEE-ECCeEEEEEEe-CCEE--EEEcCCCcCCcc-cccCcccccccCCCEEEeCCccceEeCCCCccccC
Q 024098 97 LSALPKGERRVII-QDGETILLLWY-KDEV--FAIENRSPAEGA-YSEGLINAKLTQDGCIVCPTTESTFDLRTGAVRDW 171 (272)
Q Consensus 97 ~~el~~g~~~~v~-~~g~~vvl~r~-~g~v--~A~~n~CpH~g~-L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~~~ 171 (272)
+++|++|+.+.+. +.|++++++|. +|++ ||++|.|||+|+ |+.+. +++.|.||||||+||+ ||+|+.+
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~------~~~~~~CP~Hgs~Fd~-~G~~~~g 142 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA------AENKFKCPCHGSQYDE-TGRVIRG 142 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS------SSSSEECTTTCCEECS-SSCCCSS
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC------CCCEEECCCCCCEECC-CCcEecC
Confidence 5788999887776 67888888776 8887 999999999995 87665 3578999999999998 9999999
Q ss_pred CCCCCcc
Q 024098 172 YPNNPVM 178 (272)
Q Consensus 172 P~~~pl~ 178 (272)
|+..+|.
T Consensus 143 Pa~~~L~ 149 (179)
T 1vf5_D 143 PAPLSLA 149 (179)
T ss_dssp SCCSCCB
T ss_pred CCCCCCC
Confidence 9776664
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.42 E-value=1.4e-14 Score=125.80 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=56.5
Q ss_pred EEEEECCeEEEEEEe-------------CCEEEEEcCCCcCCcc-cccCcccc------cccCCCEEEeCCccceEeCCC
Q 024098 106 RVIIQDGETILLLWY-------------KDEVFAIENRSPAEGA-YSEGLINA------KLTQDGCIVCPTTESTFDLRT 165 (272)
Q Consensus 106 ~~v~~~g~~vvl~r~-------------~g~v~A~~n~CpH~g~-L~~G~v~~------~~~~~~~i~CP~Hg~~Fdl~t 165 (272)
+.+++.+.+++++|. +|+++|+.|.|||+|+ |++|.+.. ...+++.|.||||||+||++|
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 446677777777776 5899999999999995 98875410 001468999999999999988
Q ss_pred C-ccccCCCCCCcc
Q 024098 166 G-AVRDWYPNNPVM 178 (272)
Q Consensus 166 G-~~~~~P~~~pl~ 178 (272)
| +++.+|+..+|.
T Consensus 136 GG~v~~gPa~~~L~ 149 (204)
T 1jm1_A 136 GGVVVSGPAPRPLP 149 (204)
T ss_dssp TSEEEESSCCSCCC
T ss_pred CCeEecCCCCCCCC
Confidence 6 999988776664
No 38
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=97.13 E-value=0.00011 Score=64.46 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=32.1
Q ss_pred eeeecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 223 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 223 ft~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
....+|++|||+||+|++..++.|++||+|++.++
T Consensus 175 ~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l 209 (232)
T 2bhw_A 175 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 209 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHH
T ss_pred HHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHH
Confidence 34578999999999999999999999999999986
No 39
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=97.01 E-value=0.00016 Score=63.72 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=32.2
Q ss_pred eeeecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 223 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 223 ft~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
....+|+.|||+||+|++..++.|++||+|.+++|
T Consensus 192 ~~r~~ElknGRlAMla~~g~~~q~~vtG~Gpl~~l 226 (243)
T 3pl9_A 192 ILQLAEIKHARLAMVGFLGFAVQAAVTGKGPLNNW 226 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhcCCChHHHH
Confidence 44568999999999999999999999999999887
No 40
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=96.94 E-value=7.1e-05 Score=67.04 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=33.9
Q ss_pred cceeeecccccchhHHHHHHHHHHHHHHhCCccccccc
Q 024098 221 FGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGTG 258 (272)
Q Consensus 221 fGft~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~g 258 (272)
+.....+|++|||+||+|++..++.|++||+|++.++.
T Consensus 214 ~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 214 LKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp CTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 33456789999999999999999999999999999875
No 41
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=96.93 E-value=0.00012 Score=65.74 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=30.7
Q ss_pred eeeecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 223 FNVTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 223 ft~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
....+|++|||+||+|++..++.|++||+|++.++
T Consensus 223 ~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l 257 (276)
T 2wsc_3 223 DLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNL 257 (276)
T ss_dssp --CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC-
T ss_pred HHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHH
Confidence 34678999999999999999999999999999987
No 42
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=96.46 E-value=0.00038 Score=61.39 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=31.4
Q ss_pred eeecccccchhHHHHHHHHHHHH-HHhCCccccccc
Q 024098 224 NVTSELINGKAAAIGFLLLLDFE-LLTGKGLLKGTG 258 (272)
Q Consensus 224 t~~aE~~ngr~amig~~~~~~~e-~~tg~~~~~~~g 258 (272)
....|++|||+||+|++..++.| ++||+|.+++++
T Consensus 187 ~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~ 222 (241)
T 2wsc_1 187 LKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 222 (241)
T ss_dssp SCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSS
T ss_pred HHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 45679999999999999999999 589999999885
No 43
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=95.67 E-value=0.00064 Score=60.28 Aligned_cols=37 Identities=32% Similarity=0.505 Sum_probs=32.7
Q ss_pred cCcceeeecccccchhHHHHHHHHHHHHHHhCCcccc
Q 024098 219 EGFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLLK 255 (272)
Q Consensus 219 ~~fGft~~aE~~ngr~amig~~~~~~~e~~tg~~~~~ 255 (272)
..+.+...+|++||||||+|++..++.|++++.|++.
T Consensus 86 e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~ 122 (251)
T 2wsc_4 86 ENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIIN 122 (251)
T ss_dssp CCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSC
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccC
Confidence 3567778899999999999999999999999988763
No 44
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=95.59 E-value=0.002 Score=57.07 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=29.7
Q ss_pred eecccccchhHHHHHHHHHHHHHHhCCcccccc
Q 024098 225 VTSELINGKAAAIGFLLLLDFELLTGKGLLKGT 257 (272)
Q Consensus 225 ~~aE~~ngr~amig~~~~~~~e~~tg~~~~~~~ 257 (272)
...|+.|||+ |+|++..++.|++||+|.+.+|
T Consensus 201 k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL 232 (251)
T 2wsc_4 201 KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNL 232 (251)
T ss_dssp TTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCT
T ss_pred HHHHHhcchh-HHHHHHHHHHHHhcCccHHHHH
Confidence 4569999999 9999999999999999999886
No 45
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=94.14 E-value=0.00092 Score=60.02 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=30.3
Q ss_pred ceeeecccccchhHHHHHHHHHHHHHHhCCccc
Q 024098 222 GFNVTSELINGKAAAIGFLLLLDFELLTGKGLL 254 (272)
Q Consensus 222 Gft~~aE~~ngr~amig~~~~~~~e~~tg~~~~ 254 (272)
.|...+|++||||||+|++..++.|++++.|++
T Consensus 97 ~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g~~ 129 (276)
T 2wsc_3 97 KWLAYGEIINGRYAMLGAVGAIAPEILGKAGLI 129 (276)
T ss_dssp THHHHHHHHHHTTSCCTTTSTTSCSSCSSCCCC
T ss_pred HHHHHHHhhcccchhhhHHHHHHHHHhcccccc
Confidence 677889999999999999999999999988865
No 46
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=93.36 E-value=0.015 Score=52.02 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=30.3
Q ss_pred CcceeeecccccchhHHHHHHHHHHHHHHhCCccc
Q 024098 220 GFGFNVTSELINGKAAAIGFLLLLDFELLTGKGLL 254 (272)
Q Consensus 220 ~fGft~~aE~~ngr~amig~~~~~~~e~~tg~~~~ 254 (272)
.+.+...+|+.||||||++++..++.|++++.|++
T Consensus 98 ~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~ 132 (269)
T 2wsc_2 98 SLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGIL 132 (269)
T ss_dssp CCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSS
T ss_pred HHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcc
Confidence 44556788999999999999999999999987765
No 47
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=92.74 E-value=0.035 Score=48.81 Aligned_cols=30 Identities=37% Similarity=0.321 Sum_probs=26.0
Q ss_pred cceeeecccccchhHHHHHHHHHHHHHHhC
Q 024098 221 FGFNVTSELINGKAAAIGFLLLLDFELLTG 250 (272)
Q Consensus 221 fGft~~aE~~ngr~amig~~~~~~~e~~tg 250 (272)
+-+-..+|+.||||||+|++..++.|+++|
T Consensus 89 l~r~ReaELkHGRwAMLAvlG~lvpE~l~g 118 (243)
T 3pl9_A 89 LQRFRECELIHGRWAMLATLGALTVEGLTG 118 (243)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHhhhhcchhHHHHHHHHHhHHhhcC
Confidence 344566799999999999999999999976
No 48
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=89.69 E-value=0.12 Score=45.18 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=26.6
Q ss_pred cceeeecccccchhHHHHHHHHHHHHHHhCCc
Q 024098 221 FGFNVTSELINGKAAAIGFLLLLDFELLTGKG 252 (272)
Q Consensus 221 fGft~~aE~~ngr~amig~~~~~~~e~~tg~~ 252 (272)
+.+...+|+.+||+||++++..++.|+++..|
T Consensus 58 ~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G 89 (232)
T 2bhw_A 58 FSKNRELEVIHSRWAMLGALGSVFPELLSRNG 89 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccchHHHhhhhhhhHHHhccCC
Confidence 34456789999999999999999999976433
No 49
>4esn_A Hypothetical protein; protein of PF07009 family, DUF1312, structural genomics, JOI for structural genomics, JCSG; HET: PE4; 2.20A {Ruminococcus gnavus}
Probab=74.13 E-value=5.9 Score=30.05 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=42.2
Q ss_pred EEEEECCeEEEEEEeCCEEEEEcCCCcCCcccccCcccccccCCCEEEeCCccceEeCC
Q 024098 106 RVIIQDGETILLLWYKDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 106 ~~v~~~g~~vvl~r~~g~v~A~~n~CpH~g~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
+.+.+.|..++.++ +|+++..++.||.+-+...|++.. .+..|+|-=|.-.-.++
T Consensus 38 ~~i~i~g~n~IeI~-dg~vrv~es~CPdkiCv~~GwIs~---~Gq~IVCLPnklvI~I~ 92 (104)
T 4esn_A 38 QTIEIQDGNRLRIQ-NGQAKMEWADCPDQLCVHQKAISR---TGESIICLPNQVVVSVQ 92 (104)
T ss_dssp EEEEETTTEEEEEE-TTEEEEEEECCSSCHHHHSCCBCS---TTCEEEETTTTEEEEEE
T ss_pred cEEEECCcEEEEEE-CCEEEEEECCCCCcchhhCCCcCC---CCCEEEEcCCEEEEEEE
Confidence 45666665544444 899999999999998888899853 57899998887777664
No 50
>3ld7_A LIN0431 protein; DUF1312, PF07009, LKR112, NESG, structural genomics, PSI-2, protein structure initiative; 1.55A {Listeria innocua}
Probab=72.87 E-value=6.8 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCcCCcccccCcccccccCCCEEEeCCccceEeCC
Q 024098 121 KDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 121 ~g~v~A~~n~CpH~g~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
+|+++..++.||.+-+...|++.. .+..|+|-=|.-.-.++
T Consensus 49 dg~vrv~es~CPdkiCv~~GwIs~---~Gq~IVCLPnklvI~I~ 89 (101)
T 3ld7_A 49 GERIRIKEDNSPDQVGVKMGWKSK---AGDTIVCLPHKVFVEIK 89 (101)
T ss_dssp TTEEEEEEECCSSCHHHHHCCBCS---TTCEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCCcccccCCCcCC---CCCEEEEcCCEEEEEEE
Confidence 899999999999998888899853 57899998776665553
No 51
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=68.65 E-value=11 Score=32.98 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=32.1
Q ss_pred CCEEEEEcCCCcCCcccccCcccccccCCCEEEeCCccceEeC
Q 024098 121 KDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDL 163 (272)
Q Consensus 121 ~g~v~A~~n~CpH~g~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl 163 (272)
+|+++..++.||.+ |...|++.. .|..|+|-=|.-.-.+
T Consensus 90 dG~irv~es~cPdq-Cv~~G~I~k---~G~~IvCLPnrv~I~I 128 (248)
T 1m1h_A 90 NGEVKVVESVEGDT-CVNAPPISK---PGQKITCKENKTEAKI 128 (248)
T ss_dssp SSCEEEEECSTTCG-GGGSCCBCS---TTCEEEETTTTEEEEE
T ss_pred CCEEEEEECCCChh-hhccccccc---CCCEEEecCCeEEEEE
Confidence 89999999999999 988999853 5789999767555544
No 52
>2kpp_A LIN0431 protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG, function; NMR {Listeria innocua}
Probab=60.83 E-value=18 Score=27.77 Aligned_cols=41 Identities=17% Similarity=0.302 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCcCCcccccCcccccccCCCEEEeCCccceEeCC
Q 024098 121 KDEVFAIENRSPAEGAYSEGLINAKLTQDGCIVCPTTESTFDLR 164 (272)
Q Consensus 121 ~g~v~A~~n~CpH~g~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~ 164 (272)
+|+++..++.||.+-+...|++.. .+..|+|-=|.-.-.+.
T Consensus 49 dg~vrv~es~CPdkiCv~~GwIsk---~Gq~IVCLPnkvvI~I~ 89 (114)
T 2kpp_A 49 GERIRIKEDNSPDQVGVKMGWKSK---AGDTIVCLPHKVFVEIK 89 (114)
T ss_dssp SSCEEEEEECCSSCHHHHHCSBCS---TTCEEEEGGGTEEEEEE
T ss_pred CCEEEEEECCCCCeehhhcCCcCC---CCCEEEEcCCEEEEEEE
Confidence 899999999999998888899853 57899998887777663
No 53
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=54.26 E-value=0.26 Score=43.22 Aligned_cols=28 Identities=29% Similarity=0.106 Sum_probs=23.6
Q ss_pred ceeeecccccchhHHHHHHHHHHHHHHh
Q 024098 222 GFNVTSELINGKAAAIGFLLLLDFELLT 249 (272)
Q Consensus 222 Gft~~aE~~ngr~amig~~~~~~~e~~t 249 (272)
-+...+|+.||||||++++..++.|+++
T Consensus 81 ~~~r~~El~hgR~AMla~~G~~~~e~~~ 108 (241)
T 2wsc_1 81 ERYKESELIHCRWAMLAVPGILVPEALG 108 (241)
T ss_dssp HHSHHHHHHHHHHHTTTSTTSSSTTCCC
T ss_pred HHHHHHHHhhchhHHhhhhcccchhhcc
Confidence 3446689999999999999999988854
No 54
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0
Probab=43.51 E-value=7.5 Score=31.80 Aligned_cols=16 Identities=31% Similarity=0.596 Sum_probs=13.9
Q ss_pred CCccceEeCCCCcccc
Q 024098 155 PTTESTFDLRTGAVRD 170 (272)
Q Consensus 155 P~Hg~~Fdl~tG~~~~ 170 (272)
+.|||.||++||++..
T Consensus 149 ~V~G~vydi~tG~l~~ 164 (166)
T 3las_A 149 IISGAIYDVDTGRVRE 164 (166)
T ss_dssp EEEEEEECTTTCCEEE
T ss_pred EEEEEEEECCCcEEEE
Confidence 4899999999998754
No 55
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis}
Probab=36.60 E-value=10 Score=31.04 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=14.6
Q ss_pred eCCccceEeCCCCcccc
Q 024098 154 CPTTESTFDLRTGAVRD 170 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~~ 170 (272)
-..|||.||++||++..
T Consensus 153 l~v~G~~ydi~tG~v~~ 169 (172)
T 1ylk_A 153 TSLRGFVFDVATGKLNE 169 (172)
T ss_dssp SEEEEEEECTTTCCEEE
T ss_pred CEEEEEEEECCCCeEEE
Confidence 47899999999998753
No 56
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A
Probab=36.07 E-value=11 Score=32.39 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.7
Q ss_pred eCCccceEeCCCCcccc
Q 024098 154 CPTTESTFDLRTGAVRD 170 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~~ 170 (272)
...|||.||++||++..
T Consensus 177 l~vhG~~Ydi~tG~v~~ 193 (223)
T 3qy1_A 177 VTIHGWAYSINDGLLRD 193 (223)
T ss_dssp CEEEEEEECTTTCCEEE
T ss_pred eEEEEEEEECCCcEEEE
Confidence 46899999999998864
No 57
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1
Probab=35.17 E-value=11 Score=30.59 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=14.5
Q ss_pred EeCCccceEeCCCCccc
Q 024098 153 VCPTTESTFDLRTGAVR 169 (272)
Q Consensus 153 ~CP~Hg~~Fdl~tG~~~ 169 (272)
....|||.||++||++.
T Consensus 148 ~l~v~G~~ydi~tG~v~ 164 (170)
T 1g5c_A 148 SIGVHGLIIDINTGRLK 164 (170)
T ss_dssp TSEEEEEEECTTTCCEE
T ss_pred CCEEEEEEEECCCCeEE
Confidence 35689999999999875
No 58
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1
Probab=34.16 E-value=12 Score=31.72 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=13.9
Q ss_pred eCCccceEeCCCCccc
Q 024098 154 CPTTESTFDLRTGAVR 169 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~ 169 (272)
...|||.||++||++.
T Consensus 192 l~v~G~~ydi~tG~v~ 207 (221)
T 1ekj_A 192 LALKGGYYDFVKGSFE 207 (221)
T ss_dssp CEEEEEEEETTTTEEE
T ss_pred cEEEEEEEECCCCeEE
Confidence 4689999999999864
No 59
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A
Probab=34.01 E-value=12 Score=31.65 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=14.6
Q ss_pred eCCccceEeCCCCcccc
Q 024098 154 CPTTESTFDLRTGAVRD 170 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~~ 170 (272)
...|||.||++||++..
T Consensus 188 l~V~G~~Ydi~tG~v~~ 204 (215)
T 1ym3_A 188 LAIVGVTYQLDDGRAVL 204 (215)
T ss_dssp CEEEEEEECTTTCCCEE
T ss_pred cEEEEEEEECCCCeEEE
Confidence 46899999999998754
No 60
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A
Probab=32.84 E-value=14 Score=31.87 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=13.9
Q ss_pred CCccceEeCCCCcccc
Q 024098 155 PTTESTFDLRTGAVRD 170 (272)
Q Consensus 155 P~Hg~~Fdl~tG~~~~ 170 (272)
-.|||.||++||++..
T Consensus 182 ~V~G~~Ydi~tG~v~~ 197 (227)
T 3ucj_A 182 SVHGIVYTPGTGLVKE 197 (227)
T ss_dssp EEEEEEEETTTTEEEE
T ss_pred EEEEEEEECCCCEEEE
Confidence 4799999999998764
No 61
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A
Probab=32.84 E-value=13 Score=32.07 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=14.3
Q ss_pred eCCccceEeCCCCcccc
Q 024098 154 CPTTESTFDLRTGAVRD 170 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~~ 170 (272)
.-.|||.||++||++..
T Consensus 174 l~IhG~~Ydi~tG~v~~ 190 (229)
T 3e3i_A 174 LSLHGWVYDVNDGFLVD 190 (229)
T ss_dssp CEEEEEEECTTTCCEEE
T ss_pred eEEEEEEEECCCcEEEE
Confidence 34799999999998764
No 62
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A
Probab=32.28 E-value=14 Score=32.01 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=15.8
Q ss_pred EeCCccceEeCCCCccccC
Q 024098 153 VCPTTESTFDLRTGAVRDW 171 (272)
Q Consensus 153 ~CP~Hg~~Fdl~tG~~~~~ 171 (272)
....|||.||++||++...
T Consensus 208 ~l~VhG~vYdi~tG~v~~l 226 (243)
T 2w3q_A 208 EVFVHGWLYDLSTGNIVDL 226 (243)
T ss_dssp CCEEEEEEEETTTTEEEEC
T ss_pred ceEEEEEEEECCCCeEEEE
Confidence 4578999999999988643
No 63
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae}
Probab=31.74 E-value=14 Score=31.56 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=14.6
Q ss_pred eCCccceEeCCCCcccc
Q 024098 154 CPTTESTFDLRTGAVRD 170 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~~ 170 (272)
...|||.||++||++..
T Consensus 190 L~vhG~~Ydi~tG~v~~ 206 (216)
T 3eyx_A 190 LQVYGLLYNVEDGLLQT 206 (216)
T ss_dssp CEEEEEEECTTTCCEEE
T ss_pred cEEEEEEEECCCcEEEE
Confidence 45899999999998764
No 64
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=30.93 E-value=35 Score=23.68 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=24.8
Q ss_pred CCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCccc
Q 024098 130 RSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVR 169 (272)
Q Consensus 130 ~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 169 (272)
.||-.+ +|.... .++.++|+-.|-.|-+++|-.+
T Consensus 10 ~CP~ck~~L~~~~------~~~~LiC~~cg~~YPI~dGIPv 44 (69)
T 2pk7_A 10 ACPICKGPLKLSA------DKTELISKGAGLAYPIRDGIPV 44 (69)
T ss_dssp CCTTTCCCCEECT------TSSEEEETTTTEEEEEETTEEC
T ss_pred eCCCCCCcCeEeC------CCCEEEcCCCCcEecCcCCeee
Confidence 488766 563211 4588999999999999988543
No 65
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=26.07 E-value=40 Score=23.32 Aligned_cols=34 Identities=6% Similarity=0.078 Sum_probs=24.9
Q ss_pred CCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCccc
Q 024098 130 RSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVR 169 (272)
Q Consensus 130 ~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 169 (272)
.||..+ +|.... ..+.++|+--|-.|-+++|-.+
T Consensus 10 ~CP~ck~~L~~~~------~~~~LiC~~cg~~YPI~dGIPv 44 (68)
T 2jr6_A 10 VCPVTKGRLEYHQ------DKQELWSRQAKLAYPIKDGIPY 44 (68)
T ss_dssp BCSSSCCBCEEET------TTTEEEETTTTEEEEEETTEEC
T ss_pred ECCCCCCcCeEeC------CCCEEEcCCCCcEecCCCCeee
Confidence 488776 563211 4588999999999999988544
No 66
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=26.07 E-value=39 Score=23.39 Aligned_cols=34 Identities=12% Similarity=0.201 Sum_probs=24.8
Q ss_pred CCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCccc
Q 024098 130 RSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVR 169 (272)
Q Consensus 130 ~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 169 (272)
.||-.+ +|.... .++.++|+--|-.|-+++|-.+
T Consensus 10 ~CP~ck~~L~~~~------~~~~LiC~~cg~~YPI~dGIPv 44 (68)
T 2hf1_A 10 VCPLCKGPLVFDK------SKDELICKGDRLAFPIKDGIPM 44 (68)
T ss_dssp BCTTTCCBCEEET------TTTEEEETTTTEEEEEETTEEC
T ss_pred ECCCCCCcCeEeC------CCCEEEcCCCCcEecCCCCeee
Confidence 588877 563211 4688999999999999988543
No 67
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.02 E-value=37 Score=23.63 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCccc
Q 024098 130 RSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVR 169 (272)
Q Consensus 130 ~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 169 (272)
.||-.+ +|.... .++.++|+--|-.|-+++|-.+
T Consensus 10 ~CP~ck~~L~~~~------~~~~LiC~~cg~~YPI~dGIPv 44 (70)
T 2js4_A 10 VCPVCKGRLEFQR------AQAELVCNADRLAFPVRDGVPI 44 (70)
T ss_dssp BCTTTCCBEEEET------TTTEEEETTTTEEEEEETTEEC
T ss_pred ECCCCCCcCEEeC------CCCEEEcCCCCceecCCCCeee
Confidence 488877 563211 4578999999999999988544
No 68
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=25.68 E-value=91 Score=22.35 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=18.7
Q ss_pred CCCEEEeCCccceEeCCCCcccc
Q 024098 148 QDGCIVCPTTESTFDLRTGAVRD 170 (272)
Q Consensus 148 ~~~~i~CP~Hg~~Fdl~tG~~~~ 170 (272)
+-...+|+.-|+.||.+.|....
T Consensus 24 em~~y~C~vCGyvYD~~~Gdp~~ 46 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYDEALGWPED 46 (81)
T ss_dssp CCCEEEETTTCCEEETTTCBTTT
T ss_pred CcceEEeCCCCEEEcCCcCCccc
Confidence 34689999999999998886543
No 69
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.22 E-value=41 Score=23.22 Aligned_cols=34 Identities=9% Similarity=0.100 Sum_probs=24.6
Q ss_pred CCcCCc-ccccCcccccccCCCEEEeCCccceEeCCCCccc
Q 024098 130 RSPAEG-AYSEGLINAKLTQDGCIVCPTTESTFDLRTGAVR 169 (272)
Q Consensus 130 ~CpH~g-~L~~G~v~~~~~~~~~i~CP~Hg~~Fdl~tG~~~ 169 (272)
.||... +|.... +++.++|+--|-.|-+++|-.+
T Consensus 12 ~CP~ck~~L~~~~------~~g~LvC~~c~~~YPI~dGIPv 46 (67)
T 2jny_A 12 ACPKDKGPLRYLE------SEQLLVNERLNLAYRIDDGIPV 46 (67)
T ss_dssp BCTTTCCBCEEET------TTTEEEETTTTEEEEEETTEEC
T ss_pred CCCCCCCcCeEeC------CCCEEEcCCCCccccCCCCEee
Confidence 488776 563211 4678999999999999888544
No 70
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A*
Probab=22.48 E-value=29 Score=29.28 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.6
Q ss_pred eCCccceEeCCCCcccc
Q 024098 154 CPTTESTFDLRTGAVRD 170 (272)
Q Consensus 154 CP~Hg~~Fdl~tG~~~~ 170 (272)
-+-|||.||++||++..
T Consensus 168 v~V~G~vyDv~TG~L~~ 184 (204)
T 3teo_A 168 VRITGYVYEVETHRLRK 184 (204)
T ss_dssp SEEEEEEEETTTTEEEC
T ss_pred CeEEEEEEECCCCcEee
Confidence 35899999999999764
No 71
>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}
Probab=20.81 E-value=60 Score=22.46 Aligned_cols=20 Identities=20% Similarity=0.585 Sum_probs=16.6
Q ss_pred CCCEEEeCCccceEeCCCCc
Q 024098 148 QDGCIVCPTTESTFDLRTGA 167 (272)
Q Consensus 148 ~~~~i~CP~Hg~~Fdl~tG~ 167 (272)
+++...|||-|.+|-++.+.
T Consensus 37 ~~g~~~CpYCg~~f~l~~~~ 56 (67)
T 2jrr_A 37 DTGWVECPYCDCKYVLKGSK 56 (67)
T ss_dssp TTSEEEETTTTEEEEETTSG
T ss_pred CCCeEECCCCCCEEEECCCc
Confidence 46889999999999987553
Done!